AutoCloner

Multiple sequence alignment - TraesCS3D01G174500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G174500	chr3D	100.000	4225	0	0	1	4225	156209623	156213847	0.000000e+00	7803.0
1	TraesCS3D01G174500	chr3D	87.458	295	33	4	1	294	594745279	594744988	1.880000e-88	337.0
2	TraesCS3D01G174500	chr3B	90.211	2605	156	38	1671	4224	225317047	225314491	0.000000e+00	3306.0
3	TraesCS3D01G174500	chr3B	95.939	591	13	5	840	1429	225320169	225319589	0.000000e+00	948.0
4	TraesCS3D01G174500	chr3B	85.575	617	62	11	1	591	225321168	225320553	4.640000e-174	621.0
5	TraesCS3D01G174500	chr3B	96.629	178	6	0	1498	1675	225318166	225317989	3.190000e-76	296.0
6	TraesCS3D01G174500	chr3B	87.302	63	5	2	665	725	662454430	662454369	7.580000e-08	69.4
7	TraesCS3D01G174500	chr3A	94.494	1780	61	19	1504	3263	175845046	175846808	0.000000e+00	2710.0
8	TraesCS3D01G174500	chr3A	93.329	1439	72	7	1	1434	175843601	175845020	0.000000e+00	2104.0
9	TraesCS3D01G174500	chr3A	84.456	965	97	27	3275	4225	175848006	175848931	0.000000e+00	902.0
10	TraesCS3D01G174500	chr7B	85.543	1833	166	62	1507	3262	538571252	538573062	0.000000e+00	1825.0
11	TraesCS3D01G174500	chr7B	86.786	560	36	21	859	1407	538570655	538571187	1.310000e-164	590.0
12	TraesCS3D01G174500	chr7B	78.924	446	87	4	2612	3055	683467408	683466968	3.190000e-76	296.0
13	TraesCS3D01G174500	chr7B	87.000	200	26	0	1207	1406	683468635	683468436	4.250000e-55	226.0
14	TraesCS3D01G174500	chr7D	86.518	1706	149	45	1507	3163	510323721	510325394	0.000000e+00	1801.0
15	TraesCS3D01G174500	chr7D	86.116	569	38	20	859	1407	510323098	510323645	3.660000e-160	575.0
16	TraesCS3D01G174500	chr7D	87.119	295	35	3	1	294	7491970	7492262	8.760000e-87	331.0
17	TraesCS3D01G174500	chr7D	78.993	457	83	12	2604	3055	602847424	602846976	2.470000e-77	300.0
18	TraesCS3D01G174500	chr7D	86.957	207	26	1	1207	1412	602848681	602848475	9.140000e-57	231.0
19	TraesCS3D01G174500	chr7A	86.291	1685	133	49	1507	3120	581035552	581037209	0.000000e+00	1742.0
20	TraesCS3D01G174500	chr7A	85.814	571	42	17	859	1407	581034923	581035476	1.700000e-158	569.0
21	TraesCS3D01G174500	chr7A	78.468	483	93	10	2604	3082	694516373	694515898	5.310000e-79	305.0
22	TraesCS3D01G174500	chr7A	87.000	200	26	0	1207	1406	694517615	694517416	4.250000e-55	226.0
23	TraesCS3D01G174500	chr1A	89.655	290	30	0	1	290	77284143	77283854	1.860000e-98	370.0
24	TraesCS3D01G174500	chr2B	88.276	290	31	3	1	289	522859527	522859814	1.120000e-90	344.0
25	TraesCS3D01G174500	chr1B	87.797	295	33	3	1	294	421545380	421545088	4.050000e-90	342.0
26	TraesCS3D01G174500	chr2D	87.162	296	37	1	1	296	484019183	484018889	6.770000e-88	335.0
27	TraesCS3D01G174500	chr2D	85.321	109	13	3	1894	2001	476688341	476688447	4.470000e-20	110.0
28	TraesCS3D01G174500	chr5B	86.780	295	34	5	4	297	625091710	625091420	1.470000e-84	324.0
29	TraesCS3D01G174500	chr6D	83.626	171	20	6	1240	1406	438810504	438810338	2.030000e-33	154.0
30	TraesCS3D01G174500	chr2A	85.417	96	14	0	1894	1989	618972883	618972978	2.690000e-17	100.0
31	TraesCS3D01G174500	chr4A	84.375	64	10	0	1508	1571	597945581	597945518	3.530000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G174500	chr3D	156209623	156213847	4224	False	7803.000000	7803	100.000000	1	4225	1	chr3D.!!$F1	4224
1	TraesCS3D01G174500	chr3B	225314491	225321168	6677	True	1292.750000	3306	92.088500	1	4224	4	chr3B.!!$R2	4223
2	TraesCS3D01G174500	chr3A	175843601	175848931	5330	False	1905.333333	2710	90.759667	1	4225	3	chr3A.!!$F1	4224
3	TraesCS3D01G174500	chr7B	538570655	538573062	2407	False	1207.500000	1825	86.164500	859	3262	2	chr7B.!!$F1	2403
4	TraesCS3D01G174500	chr7B	683466968	683468635	1667	True	261.000000	296	82.962000	1207	3055	2	chr7B.!!$R1	1848
5	TraesCS3D01G174500	chr7D	510323098	510325394	2296	False	1188.000000	1801	86.317000	859	3163	2	chr7D.!!$F2	2304
6	TraesCS3D01G174500	chr7D	602846976	602848681	1705	True	265.500000	300	82.975000	1207	3055	2	chr7D.!!$R1	1848
7	TraesCS3D01G174500	chr7A	581034923	581037209	2286	False	1155.500000	1742	86.052500	859	3120	2	chr7A.!!$F1	2261
8	TraesCS3D01G174500	chr7A	694515898	694517615	1717	True	265.500000	305	82.734000	1207	3082	2	chr7A.!!$R1	1875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
834	1067	0.178981	CGGATAGGGGGTCGGTTAGA	60.179	60.000	0.00	0.0	0.0	2.10	F
2314	5105	1.153168	GCGTGGCATGGTGGACTAT	60.153	57.895	9.08	0.0	0.0	2.12	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2770	5609	1.123077	CCATCCTCTTGATCACCGGA	58.877	55.0	9.46	8.72	0.0	5.14	R
3591	7659	0.240145	CGGCGAGCGAATCTACCATA	59.760	55.0	0.00	0.00	0.0	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	0.261696	AGCTTCAACCCACCACCTTT	59.738	50.000	0.00	0.00	0.00	3.11
81	82	3.868077	CCCGATCAGAGATCTTGTGTTTC	59.132	47.826	0.00	0.26	0.00	2.78
85	86	4.963318	TCAGAGATCTTGTGTTTCCACT	57.037	40.909	0.00	0.00	42.34	4.00
95	96	1.267806	GTGTTTCCACTGGAGTGCATG	59.732	52.381	0.91	0.00	44.34	4.06
162	163	2.022129	GCGCCTCGATAACCGGATG	61.022	63.158	9.46	0.00	39.14	3.51
168	169	0.673985	TCGATAACCGGATGCCTCTG	59.326	55.000	9.46	0.00	39.14	3.35
243	244	1.350193	CACCACCTTCGATCGAACAG	58.650	55.000	25.96	21.05	0.00	3.16
256	257	4.327357	CGATCGAACAGCAACAGACTAAAT	59.673	41.667	10.26	0.00	0.00	1.40
263	264	7.201556	CGAACAGCAACAGACTAAATATGACAT	60.202	37.037	0.00	0.00	0.00	3.06
367	385	1.416401	GTTTGTGGGTCTCTCTGTCCA	59.584	52.381	0.00	0.00	0.00	4.02
383	401	2.280389	CATGATCTCCGCCACCCG	60.280	66.667	0.00	0.00	0.00	5.28
431	449	1.261938	TGGTAGCTCCTTTGCGGCTA	61.262	55.000	0.00	0.00	37.50	3.93
647	674	3.273071	ATCAGCTGTGGGGAGGGGA	62.273	63.158	14.67	0.00	0.00	4.81
649	676	2.612115	AGCTGTGGGGAGGGGAAG	60.612	66.667	0.00	0.00	0.00	3.46
720	950	4.252971	GCTGAGCGGTGGAGTAAATATA	57.747	45.455	0.00	0.00	0.00	0.86
736	966	1.185618	TATAGGCGGAGATGCGGCTT	61.186	55.000	26.10	16.28	42.03	4.35
737	967	1.185618	ATAGGCGGAGATGCGGCTTA	61.186	55.000	26.10	13.38	42.03	3.09
754	984	5.299531	GCGGCTTAGAGGATAAATTTTCCTT	59.700	40.000	17.54	12.25	43.75	3.36
793	1024	0.855349	CTTGGCTAGATGCGCGTTAG	59.145	55.000	8.43	8.82	44.05	2.34
798	1029	2.047769	GCTAGATGCGCGTTAGAGAAG	58.952	52.381	8.43	0.00	0.00	2.85
823	1056	3.622166	AAACACTAACACCGGATAGGG	57.378	47.619	9.46	11.41	46.96	3.53
827	1060	1.046204	CTAACACCGGATAGGGGGTC	58.954	60.000	9.46	0.00	41.95	4.46
828	1061	0.756442	TAACACCGGATAGGGGGTCG	60.756	60.000	9.46	0.00	41.95	4.79
829	1062	3.231736	CACCGGATAGGGGGTCGG	61.232	72.222	9.46	0.00	46.96	4.79
831	1064	2.445274	CCGGATAGGGGGTCGGTT	60.445	66.667	0.00	0.00	37.92	4.44
832	1065	1.152483	CCGGATAGGGGGTCGGTTA	60.152	63.158	0.00	0.00	37.92	2.85
833	1066	1.183676	CCGGATAGGGGGTCGGTTAG	61.184	65.000	0.00	0.00	37.92	2.34
834	1067	0.178981	CGGATAGGGGGTCGGTTAGA	60.179	60.000	0.00	0.00	0.00	2.10
835	1068	1.549493	CGGATAGGGGGTCGGTTAGAT	60.549	57.143	0.00	0.00	0.00	1.98
836	1069	2.291153	CGGATAGGGGGTCGGTTAGATA	60.291	54.545	0.00	0.00	0.00	1.98
837	1070	3.363627	GGATAGGGGGTCGGTTAGATAG	58.636	54.545	0.00	0.00	0.00	2.08
1435	1790	4.618489	CGAGAACAAAGTCAATTTCATGCC	59.382	41.667	0.00	0.00	0.00	4.40
1446	1801	1.522668	TTTCATGCCTTGGACACGAG	58.477	50.000	0.00	0.00	0.00	4.18
1454	1809	2.612972	GCCTTGGACACGAGAGATTTCA	60.613	50.000	0.00	0.00	0.00	2.69
1457	1812	5.605534	CCTTGGACACGAGAGATTTCATAT	58.394	41.667	0.00	0.00	0.00	1.78
1458	1813	6.738731	GCCTTGGACACGAGAGATTTCATATA	60.739	42.308	0.00	0.00	0.00	0.86
1459	1814	7.382110	CCTTGGACACGAGAGATTTCATATAT	58.618	38.462	0.00	0.00	0.00	0.86
1460	1815	7.875041	CCTTGGACACGAGAGATTTCATATATT	59.125	37.037	0.00	0.00	0.00	1.28
1461	1816	9.914131	CTTGGACACGAGAGATTTCATATATTA	57.086	33.333	0.00	0.00	0.00	0.98
2011	4786	1.656652	TACTGCTACTACCCGTCGAC	58.343	55.000	5.18	5.18	0.00	4.20
2054	4830	9.925545	TCACCACATTAACTAGGTAATAGTAGA	57.074	33.333	12.70	5.48	44.26	2.59
2314	5105	1.153168	GCGTGGCATGGTGGACTAT	60.153	57.895	9.08	0.00	0.00	2.12
3250	6130	9.490379	AGTAAACTATCTTATCTAAAATGCCGG	57.510	33.333	0.00	0.00	0.00	6.13
3323	7390	8.163768	CAAACAGAATTTTGGGCACAATAGTGA	61.164	37.037	0.06	0.00	39.01	3.41
3383	7450	2.594303	CAGCTGTTGCGGTTGGGA	60.594	61.111	5.25	0.00	45.42	4.37
3386	7453	2.700773	GCTGTTGCGGTTGGGATCC	61.701	63.158	1.92	1.92	0.00	3.36
3436	7504	1.134670	AGCATCTCTAGCCAAACCGTC	60.135	52.381	0.00	0.00	0.00	4.79
3484	7552	2.231721	AGCTGAACTCCTACTCGGTTTC	59.768	50.000	0.00	0.00	0.00	2.78
3491	7559	0.454600	CCTACTCGGTTTCGCTGCTA	59.545	55.000	0.00	0.00	36.13	3.49
3560	7628	0.464036	TCATATCGCTCAACGCCCTT	59.536	50.000	0.00	0.00	43.23	3.95
3629	7697	2.253452	CAACGCTGCAGCTGGAAC	59.747	61.111	34.22	7.28	39.32	3.62
3647	7715	2.531177	ACCATCCCATATCTTCCCCA	57.469	50.000	0.00	0.00	0.00	4.96
3708	7783	1.161563	TCGTCCAAAACAGAACCGGC	61.162	55.000	0.00	0.00	0.00	6.13
3744	7825	2.359967	ACCCGTGGAAGAGCTAGGC	61.360	63.158	0.00	0.00	0.00	3.93
3795	7877	1.585297	TCGAAAACCGGAGTTCAACC	58.415	50.000	9.46	0.00	39.14	3.77
3796	7878	1.134461	TCGAAAACCGGAGTTCAACCA	60.134	47.619	9.46	0.00	39.14	3.67
3797	7879	1.877443	CGAAAACCGGAGTTCAACCAT	59.123	47.619	9.46	0.00	34.19	3.55
3799	7881	2.649531	AAACCGGAGTTCAACCATGA	57.350	45.000	9.46	0.00	34.19	3.07
3800	7882	2.649531	AACCGGAGTTCAACCATGAA	57.350	45.000	9.46	0.00	43.18	2.57
3816	7901	4.141756	ACCATGAAGAGCCTAGTCAATCAG	60.142	45.833	0.00	0.00	0.00	2.90
3823	7908	1.804372	GCCTAGTCAATCAGGAGCACG	60.804	57.143	0.00	0.00	33.42	5.34
3860	7945	1.279271	TCCTCCTTAGAACTTGCAGGC	59.721	52.381	0.00	0.00	0.00	4.85
3958	8043	1.739466	TCGCAAAGTGCTCCATGAATC	59.261	47.619	0.00	0.00	42.25	2.52
3959	8044	1.469703	CGCAAAGTGCTCCATGAATCA	59.530	47.619	0.00	0.00	42.25	2.57
3974	8059	8.908786	TCCATGAATCACATAGGTAAGATTTC	57.091	34.615	0.00	0.00	37.46	2.17
4078	8164	4.843516	AGGGAGATGTTCTTCAAAGACTCT	59.156	41.667	0.00	4.25	34.13	3.24
4083	8169	7.307692	GGAGATGTTCTTCAAAGACTCTTTGAC	60.308	40.741	26.99	18.73	38.05	3.18
4086	8172	4.771114	TCTTCAAAGACTCTTTGACCCA	57.229	40.909	26.99	15.67	38.05	4.51
4103	8189	3.780850	GACCCAAGGAGGAGGAAGAATAA	59.219	47.826	0.00	0.00	41.22	1.40
4125	8211	9.740239	AATAAGATGATGATTTTGAAATGACCG	57.260	29.630	0.00	0.00	0.00	4.79
4137	8223	0.246360	AATGACCGCTGTCGTGATCA	59.754	50.000	3.55	0.00	44.86	2.92
4162	8248	7.082742	ATTCACAAGGAATTTTGGCAACCAAA	61.083	34.615	7.69	7.69	43.76	3.28
4183	8269	0.107703	CTAGGATCGCAGTTTGGCCA	60.108	55.000	0.00	0.00	0.00	5.36
4187	8273	0.598065	GATCGCAGTTTGGCCACTTT	59.402	50.000	3.88	0.00	0.00	2.66
4204	8290	6.491403	GGCCACTTTTATGTCAATCAGGATAT	59.509	38.462	0.00	0.00	0.00	1.63

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	1.450134	CTGCGTCATGCCCTTGCTA	60.450	57.895	0.00	0.00	45.60	3.49
81	82	1.271001	TGAGTTCATGCACTCCAGTGG	60.271	52.381	20.64	1.40	45.72	4.00
85	86	3.144657	ACAATGAGTTCATGCACTCCA	57.855	42.857	20.64	10.62	42.39	3.86
95	96	2.808543	AGACGGCTTCAACAATGAGTTC	59.191	45.455	0.00	0.00	38.74	3.01
162	163	0.603569	TCGTTGTCTTCTCCAGAGGC	59.396	55.000	0.00	0.00	29.34	4.70
168	169	6.237595	CGTCTTTATCATTCGTTGTCTTCTCC	60.238	42.308	0.00	0.00	0.00	3.71
243	244	6.763135	TGGAGATGTCATATTTAGTCTGTTGC	59.237	38.462	0.00	0.00	0.00	4.17
256	257	2.042464	GGCTCTGGTGGAGATGTCATA	58.958	52.381	0.00	0.00	44.45	2.15
263	264	0.325933	CACAATGGCTCTGGTGGAGA	59.674	55.000	0.00	0.00	44.45	3.71
367	385	2.764128	ACGGGTGGCGGAGATCAT	60.764	61.111	0.00	0.00	0.00	2.45
585	612	1.770324	CCCTATCCTCCCAATGGCC	59.230	63.158	0.00	0.00	0.00	5.36
622	649	2.124403	CCACAGCTGATGCCTCCC	60.124	66.667	23.35	0.00	40.80	4.30
632	659	2.612115	CTTCCCCTCCCCACAGCT	60.612	66.667	0.00	0.00	0.00	4.24
634	661	1.997874	CTCCTTCCCCTCCCCACAG	60.998	68.421	0.00	0.00	0.00	3.66
647	674	2.041928	CCTCTGCCCCTCCTCCTT	59.958	66.667	0.00	0.00	0.00	3.36
649	676	2.445654	CTCCTCTGCCCCTCCTCC	60.446	72.222	0.00	0.00	0.00	4.30
720	950	3.154473	TAAGCCGCATCTCCGCCT	61.154	61.111	0.00	0.00	0.00	5.52
754	984	6.821160	GCCAAGCCTAATTTAGCCAATAAAAA	59.179	34.615	0.00	0.00	36.94	1.94
771	1001	2.203126	GCGCATCTAGCCAAGCCT	60.203	61.111	0.30	0.00	41.38	4.58
776	1007	0.030773	CTCTAACGCGCATCTAGCCA	59.969	55.000	5.73	0.00	41.38	4.75
779	1010	3.341857	ACTTCTCTAACGCGCATCTAG	57.658	47.619	5.73	4.56	0.00	2.43
821	1054	0.835115	CCCCTATCTAACCGACCCCC	60.835	65.000	0.00	0.00	0.00	5.40
822	1055	0.835115	CCCCCTATCTAACCGACCCC	60.835	65.000	0.00	0.00	0.00	4.95
823	1056	0.105298	ACCCCCTATCTAACCGACCC	60.105	60.000	0.00	0.00	0.00	4.46
824	1057	1.336131	GACCCCCTATCTAACCGACC	58.664	60.000	0.00	0.00	0.00	4.79
825	1058	0.957362	CGACCCCCTATCTAACCGAC	59.043	60.000	0.00	0.00	0.00	4.79
826	1059	0.178981	CCGACCCCCTATCTAACCGA	60.179	60.000	0.00	0.00	0.00	4.69
827	1060	0.468771	ACCGACCCCCTATCTAACCG	60.469	60.000	0.00	0.00	0.00	4.44
828	1061	1.798626	AACCGACCCCCTATCTAACC	58.201	55.000	0.00	0.00	0.00	2.85
829	1062	3.825585	CTCTAACCGACCCCCTATCTAAC	59.174	52.174	0.00	0.00	0.00	2.34
830	1063	3.464833	ACTCTAACCGACCCCCTATCTAA	59.535	47.826	0.00	0.00	0.00	2.10
831	1064	3.059097	ACTCTAACCGACCCCCTATCTA	58.941	50.000	0.00	0.00	0.00	1.98
832	1065	1.858246	ACTCTAACCGACCCCCTATCT	59.142	52.381	0.00	0.00	0.00	1.98
833	1066	2.364647	CAACTCTAACCGACCCCCTATC	59.635	54.545	0.00	0.00	0.00	2.08
834	1067	2.395619	CAACTCTAACCGACCCCCTAT	58.604	52.381	0.00	0.00	0.00	2.57
835	1068	1.856629	CAACTCTAACCGACCCCCTA	58.143	55.000	0.00	0.00	0.00	3.53
836	1069	1.551019	GCAACTCTAACCGACCCCCT	61.551	60.000	0.00	0.00	0.00	4.79
837	1070	1.078637	GCAACTCTAACCGACCCCC	60.079	63.158	0.00	0.00	0.00	5.40
1200	1471	1.445410	CTTCGCGAACCCGTCATGA	60.445	57.895	19.38	0.00	38.24	3.07
1429	1700	0.247460	CTCTCGTGTCCAAGGCATGA	59.753	55.000	0.00	5.67	0.00	3.07
1435	1790	8.824159	AATATATGAAATCTCTCGTGTCCAAG	57.176	34.615	0.00	0.00	0.00	3.61
2125	4904	3.206150	TCTTGTGCACCTTCTTGTTCTC	58.794	45.455	15.69	0.00	0.00	2.87
2234	5023	6.038382	TGGAAACGTAGCACAAACAATTAGAA	59.962	34.615	0.00	0.00	0.00	2.10
2575	5393	1.757306	CAGGGACCTGCTGTTGTCT	59.243	57.895	5.27	0.00	37.24	3.41
2643	5482	4.462280	CCCGGCGGTTCAGGTACC	62.462	72.222	26.32	2.73	34.72	3.34
2737	5576	1.967535	CGAGTCCTTCCAGTGCTCA	59.032	57.895	0.00	0.00	0.00	4.26
2770	5609	1.123077	CCATCCTCTTGATCACCGGA	58.877	55.000	9.46	8.72	0.00	5.14
3128	5973	9.093970	TCGAATCAAACAACCTATAATGTACAG	57.906	33.333	0.33	0.00	0.00	2.74
3129	5974	9.438228	TTCGAATCAAACAACCTATAATGTACA	57.562	29.630	0.00	0.00	0.00	2.90
3138	5983	8.842280	ACACTAAAATTCGAATCAAACAACCTA	58.158	29.630	11.83	0.00	0.00	3.08
3268	6174	3.549423	CCAAATTAGATGCGCACCTCATG	60.549	47.826	11.60	5.59	0.00	3.07
3339	7406	3.963428	ATCTGACCGTACTGAGCTTTT	57.037	42.857	0.00	0.00	0.00	2.27
3346	7413	4.979197	GCTGAATTCTATCTGACCGTACTG	59.021	45.833	7.05	0.00	0.00	2.74
3347	7414	4.890581	AGCTGAATTCTATCTGACCGTACT	59.109	41.667	7.05	0.00	0.00	2.73
3383	7450	3.341823	GCATCATAGCGAATTCCAGGAT	58.658	45.455	0.00	0.00	0.00	3.24
3386	7453	2.775890	AGGCATCATAGCGAATTCCAG	58.224	47.619	0.00	0.00	34.64	3.86
3429	7497	6.746745	TGAGTTAAGACTTTTTGACGGTTT	57.253	33.333	0.00	0.00	35.88	3.27
3436	7504	5.911838	GCTCAGCTTGAGTTAAGACTTTTTG	59.088	40.000	12.71	0.00	45.94	2.44
3459	7527	1.335496	CGAGTAGGAGTTCAGCTAGGC	59.665	57.143	0.00	0.00	0.00	3.93
3536	7604	1.654775	GCGTTGAGCGATATGAAAGCG	60.655	52.381	0.00	0.00	44.77	4.68
3590	7658	1.335597	CGGCGAGCGAATCTACCATAA	60.336	52.381	0.00	0.00	0.00	1.90
3591	7659	0.240145	CGGCGAGCGAATCTACCATA	59.760	55.000	0.00	0.00	0.00	2.74
3629	7697	2.092753	CGATGGGGAAGATATGGGATGG	60.093	54.545	0.00	0.00	0.00	3.51
3708	7783	1.374125	TGCTCAACATGGTCGTCCG	60.374	57.895	0.00	0.00	36.30	4.79
3721	7802	3.059982	CTCTTCCACGGGTGCTCA	58.940	61.111	0.00	0.00	0.00	4.26
3744	7825	4.160635	GCCACAATTCCGACGCCG	62.161	66.667	0.00	0.00	0.00	6.46
3795	7877	4.100653	TCCTGATTGACTAGGCTCTTCATG	59.899	45.833	0.00	0.00	34.00	3.07
3796	7878	4.293494	TCCTGATTGACTAGGCTCTTCAT	58.707	43.478	0.00	0.00	34.00	2.57
3797	7879	3.703556	CTCCTGATTGACTAGGCTCTTCA	59.296	47.826	0.00	0.00	34.00	3.02
3799	7881	2.433970	GCTCCTGATTGACTAGGCTCTT	59.566	50.000	0.00	0.00	34.00	2.85
3800	7882	2.038659	GCTCCTGATTGACTAGGCTCT	58.961	52.381	0.00	0.00	34.00	4.09
3816	7901	1.216710	CTCCTCCAAGTCGTGCTCC	59.783	63.158	0.00	0.00	0.00	4.70
3851	7936	2.113986	GTGGAGTGGCCTGCAAGT	59.886	61.111	3.32	0.00	41.04	3.16
3860	7945	4.729918	GGCTGGGCTGTGGAGTGG	62.730	72.222	0.00	0.00	0.00	4.00
3900	7985	2.480555	CGCCGACAACATTGAGGC	59.519	61.111	18.88	18.88	45.01	4.70
3958	8043	6.949352	AGCAATGGAAATCTTACCTATGTG	57.051	37.500	0.00	0.00	0.00	3.21
3959	8044	7.961326	AAAGCAATGGAAATCTTACCTATGT	57.039	32.000	0.00	0.00	0.00	2.29
3987	8073	9.593134	TGATTGCAAAACTAGTAAAACACAATT	57.407	25.926	1.71	0.00	0.00	2.32
4037	8123	6.444704	TCTCCCTTAACCTCTTGATCTACAT	58.555	40.000	0.00	0.00	0.00	2.29
4045	8131	5.428184	AGAACATCTCCCTTAACCTCTTG	57.572	43.478	0.00	0.00	0.00	3.02
4078	8164	1.705186	CTTCCTCCTCCTTGGGTCAAA	59.295	52.381	0.00	0.00	36.20	2.69
4083	8169	4.040755	TCTTATTCTTCCTCCTCCTTGGG	58.959	47.826	0.00	0.00	36.20	4.12
4086	8172	6.848631	TCATCATCTTATTCTTCCTCCTCCTT	59.151	38.462	0.00	0.00	0.00	3.36
4103	8189	5.359009	AGCGGTCATTTCAAAATCATCATCT	59.641	36.000	0.00	0.00	0.00	2.90
4119	8205	0.461548	ATGATCACGACAGCGGTCAT	59.538	50.000	17.26	0.00	44.54	3.06
4137	8223	4.141528	TGGTTGCCAAAATTCCTTGTGAAT	60.142	37.500	0.00	0.00	45.75	2.57
4162	8248	1.679032	GGCCAAACTGCGATCCTAGTT	60.679	52.381	0.00	3.98	38.70	2.24
4183	8269	9.499479	CTGCTATATCCTGATTGACATAAAAGT	57.501	33.333	0.00	0.00	0.00	2.66
4187	8273	8.316946	CCTTCTGCTATATCCTGATTGACATAA	58.683	37.037	0.00	0.00	0.00	1.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.