Multiple sequence alignment - TraesCS3D01G174400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G174400 chr3D 100.000 2767 0 0 1 2767 156205458 156208224 0.000000e+00 5110.0
1 TraesCS3D01G174400 chr3D 81.306 337 41 22 39 364 598017910 598018235 1.270000e-63 254.0
2 TraesCS3D01G174400 chr3D 94.737 38 2 0 347 384 587317051 587317014 2.980000e-05 60.2
3 TraesCS3D01G174400 chr3B 94.171 1664 47 16 959 2588 225449844 225448197 0.000000e+00 2490.0
4 TraesCS3D01G174400 chr3B 96.429 196 3 1 2572 2767 225445671 225445480 1.240000e-83 320.0
5 TraesCS3D01G174400 chr3A 91.503 1836 77 28 962 2767 175808569 175810355 0.000000e+00 2453.0
6 TraesCS3D01G174400 chr3A 81.230 309 34 18 13 313 9893184 9892892 7.710000e-56 228.0
7 TraesCS3D01G174400 chr6A 82.284 429 49 14 1 413 585495786 585496203 2.040000e-91 346.0
8 TraesCS3D01G174400 chr5A 82.464 422 48 21 1 413 359695379 359694975 2.040000e-91 346.0
9 TraesCS3D01G174400 chr5A 79.949 394 45 21 43 413 575535606 575535988 2.730000e-65 259.0
10 TraesCS3D01G174400 chr1B 82.100 419 54 16 1 413 614273733 614273330 3.410000e-89 339.0
11 TraesCS3D01G174400 chr1B 76.129 310 37 28 354 628 576512168 576512475 8.040000e-26 128.0
12 TraesCS3D01G174400 chr1B 93.478 46 1 2 2484 2529 470898312 470898355 1.780000e-07 67.6
13 TraesCS3D01G174400 chr5D 84.123 359 40 15 3 354 361575847 361575499 5.710000e-87 331.0
14 TraesCS3D01G174400 chr5D 82.548 361 44 17 1 354 457645639 457645987 1.610000e-77 300.0
15 TraesCS3D01G174400 chr5D 79.379 354 49 21 9 353 380174545 380174883 7.710000e-56 228.0
16 TraesCS3D01G174400 chr5D 87.500 56 3 4 2485 2540 558970501 558970552 8.270000e-06 62.1
17 TraesCS3D01G174400 chr4B 73.134 469 76 24 39 468 74672484 74672941 3.740000e-24 122.0
18 TraesCS3D01G174400 chr4B 86.585 82 6 5 380 459 391140309 391140387 4.910000e-13 86.1
19 TraesCS3D01G174400 chr4B 85.714 63 6 3 2486 2547 235358430 235358370 2.300000e-06 63.9
20 TraesCS3D01G174400 chr2A 82.576 132 15 8 443 568 620675678 620675549 2.910000e-20 110.0
21 TraesCS3D01G174400 chr5B 75.691 181 24 17 391 567 530656504 530656668 3.820000e-09 73.1
22 TraesCS3D01G174400 chr1D 100.000 38 0 0 2485 2522 12312502 12312465 1.370000e-08 71.3
23 TraesCS3D01G174400 chr1D 94.286 35 2 0 1350 1384 22505558 22505524 1.000000e-03 54.7
24 TraesCS3D01G174400 chrUn 90.385 52 3 2 2485 2536 371149058 371149009 1.780000e-07 67.6
25 TraesCS3D01G174400 chr7B 90.385 52 3 2 2485 2536 390106830 390106781 1.780000e-07 67.6
26 TraesCS3D01G174400 chr7D 91.304 46 4 0 2485 2530 311884506 311884461 2.300000e-06 63.9
27 TraesCS3D01G174400 chr2B 95.000 40 1 1 349 387 212112325 212112286 8.270000e-06 62.1
28 TraesCS3D01G174400 chr4D 84.127 63 7 3 2486 2547 258886330 258886270 1.070000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G174400 chr3D 156205458 156208224 2766 False 5110 5110 100.000 1 2767 1 chr3D.!!$F1 2766
1 TraesCS3D01G174400 chr3B 225445480 225449844 4364 True 1405 2490 95.300 959 2767 2 chr3B.!!$R1 1808
2 TraesCS3D01G174400 chr3A 175808569 175810355 1786 False 2453 2453 91.503 962 2767 1 chr3A.!!$F1 1805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
688 689 0.036732 TTTGCGGGTGAAGATCAGCT 59.963 50.0 9.16 0.0 43.82 4.24 F
861 862 0.109319 CACGCCCAAAGAATTTCCGG 60.109 55.0 0.00 0.0 35.03 5.14 F
864 865 0.173481 GCCCAAAGAATTTCCGGAGC 59.827 55.0 3.34 0.0 35.03 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 1542 1.199615 CCACCCTCCTCTTCTCCTTC 58.800 60.0 0.00 0.0 0.00 3.46 R
1671 1687 1.477553 GAAGGGAATGCAATGGCTGA 58.522 50.0 0.00 0.0 41.91 4.26 R
2031 2047 1.921982 TGCTTACCATTGGCACATGT 58.078 45.0 1.54 0.0 39.30 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 9.612066 ATGTTGAACAAGTATTTGAAAAATGGT 57.388 25.926 0.62 0.00 37.73 3.55
123 124 7.929348 ATGGTAATAAGCCATTTGGGTAAAT 57.071 32.000 1.01 0.00 46.73 1.40
124 125 7.118496 TGGTAATAAGCCATTTGGGTAAATG 57.882 36.000 1.01 5.91 46.73 2.32
206 207 8.083462 TGATCGTGTATATAAAATGTTCAGGC 57.917 34.615 0.00 0.00 0.00 4.85
207 208 7.713073 TGATCGTGTATATAAAATGTTCAGGCA 59.287 33.333 0.00 0.00 0.00 4.75
208 209 7.851387 TCGTGTATATAAAATGTTCAGGCAA 57.149 32.000 0.00 0.00 0.00 4.52
209 210 7.690228 TCGTGTATATAAAATGTTCAGGCAAC 58.310 34.615 0.00 0.00 35.28 4.17
219 220 4.998671 TGTTCAGGCAACATTTGAAAGA 57.001 36.364 0.00 0.00 40.29 2.52
220 221 5.336150 TGTTCAGGCAACATTTGAAAGAA 57.664 34.783 0.00 0.00 40.29 2.52
221 222 5.728471 TGTTCAGGCAACATTTGAAAGAAA 58.272 33.333 0.00 0.00 40.29 2.52
222 223 6.169094 TGTTCAGGCAACATTTGAAAGAAAA 58.831 32.000 0.00 0.00 40.29 2.29
223 224 6.652481 TGTTCAGGCAACATTTGAAAGAAAAA 59.348 30.769 0.00 0.00 40.29 1.94
224 225 6.907206 TCAGGCAACATTTGAAAGAAAAAG 57.093 33.333 0.00 0.00 41.41 2.27
225 226 6.405538 TCAGGCAACATTTGAAAGAAAAAGT 58.594 32.000 0.00 0.00 41.41 2.66
226 227 6.878389 TCAGGCAACATTTGAAAGAAAAAGTT 59.122 30.769 0.00 0.00 41.41 2.66
227 228 6.962678 CAGGCAACATTTGAAAGAAAAAGTTG 59.037 34.615 11.39 11.39 45.05 3.16
228 229 6.878389 AGGCAACATTTGAAAGAAAAAGTTGA 59.122 30.769 17.16 0.00 45.07 3.18
229 230 7.390162 AGGCAACATTTGAAAGAAAAAGTTGAA 59.610 29.630 17.16 0.00 45.07 2.69
230 231 7.481483 GGCAACATTTGAAAGAAAAAGTTGAAC 59.519 33.333 17.16 8.54 45.07 3.18
231 232 8.014517 GCAACATTTGAAAGAAAAAGTTGAACA 58.985 29.630 17.16 0.00 45.07 3.18
232 233 9.875675 CAACATTTGAAAGAAAAAGTTGAACAA 57.124 25.926 10.59 0.00 45.07 2.83
234 235 9.271828 ACATTTGAAAGAAAAAGTTGAACAAGT 57.728 25.926 0.00 0.00 0.00 3.16
235 236 9.532697 CATTTGAAAGAAAAAGTTGAACAAGTG 57.467 29.630 0.00 0.00 0.00 3.16
236 237 8.655651 TTTGAAAGAAAAAGTTGAACAAGTGT 57.344 26.923 0.00 0.00 0.00 3.55
237 238 8.655651 TTGAAAGAAAAAGTTGAACAAGTGTT 57.344 26.923 0.00 0.00 41.64 3.32
253 254 9.820229 GAACAAGTGTTCGAATAATGTTAATCA 57.180 29.630 20.00 1.58 43.97 2.57
255 256 9.825972 ACAAGTGTTCGAATAATGTTAATCAAG 57.174 29.630 0.00 0.00 0.00 3.02
256 257 8.788813 CAAGTGTTCGAATAATGTTAATCAAGC 58.211 33.333 0.00 0.00 0.00 4.01
257 258 7.180079 AGTGTTCGAATAATGTTAATCAAGCG 58.820 34.615 0.00 0.00 0.00 4.68
258 259 6.959311 GTGTTCGAATAATGTTAATCAAGCGT 59.041 34.615 0.00 0.00 0.00 5.07
259 260 7.480542 GTGTTCGAATAATGTTAATCAAGCGTT 59.519 33.333 0.00 0.00 0.00 4.84
260 261 8.018520 TGTTCGAATAATGTTAATCAAGCGTTT 58.981 29.630 0.00 0.00 0.00 3.60
261 262 7.946918 TCGAATAATGTTAATCAAGCGTTTG 57.053 32.000 5.53 5.53 35.57 2.93
262 263 6.964370 TCGAATAATGTTAATCAAGCGTTTGG 59.036 34.615 12.29 0.00 34.97 3.28
263 264 6.964370 CGAATAATGTTAATCAAGCGTTTGGA 59.036 34.615 12.29 0.00 34.97 3.53
264 265 7.483375 CGAATAATGTTAATCAAGCGTTTGGAA 59.517 33.333 12.29 1.94 34.97 3.53
265 266 9.134734 GAATAATGTTAATCAAGCGTTTGGAAA 57.865 29.630 12.29 1.83 34.97 3.13
266 267 9.482627 AATAATGTTAATCAAGCGTTTGGAAAA 57.517 25.926 12.29 1.49 34.97 2.29
267 268 7.961325 AATGTTAATCAAGCGTTTGGAAAAT 57.039 28.000 12.29 2.76 34.97 1.82
268 269 6.761731 TGTTAATCAAGCGTTTGGAAAATG 57.238 33.333 12.29 0.00 34.97 2.32
269 270 6.276847 TGTTAATCAAGCGTTTGGAAAATGT 58.723 32.000 12.29 0.00 34.97 2.71
270 271 6.758886 TGTTAATCAAGCGTTTGGAAAATGTT 59.241 30.769 12.29 0.14 34.97 2.71
271 272 7.921214 TGTTAATCAAGCGTTTGGAAAATGTTA 59.079 29.630 12.29 0.00 34.97 2.41
272 273 8.756864 GTTAATCAAGCGTTTGGAAAATGTTAA 58.243 29.630 12.29 4.61 34.97 2.01
273 274 7.778470 AATCAAGCGTTTGGAAAATGTTAAA 57.222 28.000 12.29 0.00 34.97 1.52
274 275 7.961325 ATCAAGCGTTTGGAAAATGTTAAAT 57.039 28.000 12.29 0.00 34.97 1.40
275 276 9.482627 AATCAAGCGTTTGGAAAATGTTAAATA 57.517 25.926 12.29 0.00 34.97 1.40
276 277 9.651913 ATCAAGCGTTTGGAAAATGTTAAATAT 57.348 25.926 12.29 0.00 34.97 1.28
277 278 8.920665 TCAAGCGTTTGGAAAATGTTAAATATG 58.079 29.630 12.29 0.00 34.97 1.78
278 279 8.707839 CAAGCGTTTGGAAAATGTTAAATATGT 58.292 29.630 3.77 0.00 0.00 2.29
279 280 9.915629 AAGCGTTTGGAAAATGTTAAATATGTA 57.084 25.926 0.00 0.00 0.00 2.29
414 415 9.328845 AGTTAATCAAGCATTTGAAAAATGTGT 57.671 25.926 12.82 0.79 45.82 3.72
423 424 9.979578 AGCATTTGAAAAATGTGTATAGAAACA 57.020 25.926 12.82 0.00 0.00 2.83
550 551 9.605955 AAAAATCAAAACCGAAAAAGAAAACAG 57.394 25.926 0.00 0.00 0.00 3.16
551 552 8.541133 AAATCAAAACCGAAAAAGAAAACAGA 57.459 26.923 0.00 0.00 0.00 3.41
552 553 8.541133 AATCAAAACCGAAAAAGAAAACAGAA 57.459 26.923 0.00 0.00 0.00 3.02
553 554 8.716646 ATCAAAACCGAAAAAGAAAACAGAAT 57.283 26.923 0.00 0.00 0.00 2.40
554 555 9.810545 ATCAAAACCGAAAAAGAAAACAGAATA 57.189 25.926 0.00 0.00 0.00 1.75
555 556 9.640963 TCAAAACCGAAAAAGAAAACAGAATAA 57.359 25.926 0.00 0.00 0.00 1.40
558 559 7.997107 ACCGAAAAAGAAAACAGAATAAACC 57.003 32.000 0.00 0.00 0.00 3.27
559 560 7.548967 ACCGAAAAAGAAAACAGAATAAACCA 58.451 30.769 0.00 0.00 0.00 3.67
560 561 8.035984 ACCGAAAAAGAAAACAGAATAAACCAA 58.964 29.630 0.00 0.00 0.00 3.67
561 562 8.874816 CCGAAAAAGAAAACAGAATAAACCAAA 58.125 29.630 0.00 0.00 0.00 3.28
590 591 8.729805 AAAAATAACCTGAAGAAACAAATGCA 57.270 26.923 0.00 0.00 0.00 3.96
591 592 8.729805 AAAATAACCTGAAGAAACAAATGCAA 57.270 26.923 0.00 0.00 0.00 4.08
592 593 8.729805 AAATAACCTGAAGAAACAAATGCAAA 57.270 26.923 0.00 0.00 0.00 3.68
593 594 8.729805 AATAACCTGAAGAAACAAATGCAAAA 57.270 26.923 0.00 0.00 0.00 2.44
594 595 8.729805 ATAACCTGAAGAAACAAATGCAAAAA 57.270 26.923 0.00 0.00 0.00 1.94
595 596 7.628769 AACCTGAAGAAACAAATGCAAAAAT 57.371 28.000 0.00 0.00 0.00 1.82
596 597 8.729805 AACCTGAAGAAACAAATGCAAAAATA 57.270 26.923 0.00 0.00 0.00 1.40
597 598 8.729805 ACCTGAAGAAACAAATGCAAAAATAA 57.270 26.923 0.00 0.00 0.00 1.40
598 599 8.611757 ACCTGAAGAAACAAATGCAAAAATAAC 58.388 29.630 0.00 0.00 0.00 1.89
599 600 7.793427 CCTGAAGAAACAAATGCAAAAATAACG 59.207 33.333 0.00 0.00 0.00 3.18
600 601 8.412608 TGAAGAAACAAATGCAAAAATAACGA 57.587 26.923 0.00 0.00 0.00 3.85
601 602 8.873830 TGAAGAAACAAATGCAAAAATAACGAA 58.126 25.926 0.00 0.00 0.00 3.85
602 603 9.695884 GAAGAAACAAATGCAAAAATAACGAAA 57.304 25.926 0.00 0.00 0.00 3.46
647 648 7.764695 AAAACTGAATAAAACAGGAAAACGG 57.235 32.000 0.00 0.00 39.38 4.44
648 649 6.459670 AACTGAATAAAACAGGAAAACGGT 57.540 33.333 0.00 0.00 39.38 4.83
649 650 5.827666 ACTGAATAAAACAGGAAAACGGTG 58.172 37.500 0.00 0.00 39.38 4.94
650 651 5.189659 TGAATAAAACAGGAAAACGGTGG 57.810 39.130 0.00 0.00 0.00 4.61
651 652 4.888239 TGAATAAAACAGGAAAACGGTGGA 59.112 37.500 0.00 0.00 0.00 4.02
652 653 5.009210 TGAATAAAACAGGAAAACGGTGGAG 59.991 40.000 0.00 0.00 0.00 3.86
653 654 2.721425 AAACAGGAAAACGGTGGAGA 57.279 45.000 0.00 0.00 0.00 3.71
654 655 2.721425 AACAGGAAAACGGTGGAGAA 57.279 45.000 0.00 0.00 0.00 2.87
655 656 2.256117 ACAGGAAAACGGTGGAGAAG 57.744 50.000 0.00 0.00 0.00 2.85
656 657 1.766496 ACAGGAAAACGGTGGAGAAGA 59.234 47.619 0.00 0.00 0.00 2.87
657 658 2.372172 ACAGGAAAACGGTGGAGAAGAT 59.628 45.455 0.00 0.00 0.00 2.40
658 659 3.003480 CAGGAAAACGGTGGAGAAGATC 58.997 50.000 0.00 0.00 0.00 2.75
659 660 2.637872 AGGAAAACGGTGGAGAAGATCA 59.362 45.455 0.00 0.00 0.00 2.92
660 661 3.003480 GGAAAACGGTGGAGAAGATCAG 58.997 50.000 0.00 0.00 0.00 2.90
661 662 2.100605 AAACGGTGGAGAAGATCAGC 57.899 50.000 0.00 0.00 0.00 4.26
662 663 1.270907 AACGGTGGAGAAGATCAGCT 58.729 50.000 0.00 0.00 0.00 4.24
663 664 1.270907 ACGGTGGAGAAGATCAGCTT 58.729 50.000 0.00 0.00 40.25 3.74
664 665 1.625818 ACGGTGGAGAAGATCAGCTTT 59.374 47.619 0.00 0.00 36.83 3.51
665 666 2.039084 ACGGTGGAGAAGATCAGCTTTT 59.961 45.455 0.00 0.00 36.83 2.27
666 667 3.077359 CGGTGGAGAAGATCAGCTTTTT 58.923 45.455 0.00 0.00 36.83 1.94
687 688 0.881118 TTTTGCGGGTGAAGATCAGC 59.119 50.000 0.00 1.06 43.63 4.26
688 689 0.036732 TTTGCGGGTGAAGATCAGCT 59.963 50.000 9.16 0.00 43.82 4.24
691 692 3.540211 CGGGTGAAGATCAGCTGTT 57.460 52.632 14.67 5.03 44.00 3.16
692 693 1.813513 CGGGTGAAGATCAGCTGTTT 58.186 50.000 14.67 7.08 44.00 2.83
693 694 2.154462 CGGGTGAAGATCAGCTGTTTT 58.846 47.619 14.67 6.71 44.00 2.43
694 695 3.334691 CGGGTGAAGATCAGCTGTTTTA 58.665 45.455 14.67 1.45 44.00 1.52
695 696 3.941483 CGGGTGAAGATCAGCTGTTTTAT 59.059 43.478 14.67 0.00 44.00 1.40
696 697 4.396166 CGGGTGAAGATCAGCTGTTTTATT 59.604 41.667 14.67 3.71 44.00 1.40
697 698 5.644644 GGGTGAAGATCAGCTGTTTTATTG 58.355 41.667 14.67 0.00 43.82 1.90
698 699 5.393461 GGGTGAAGATCAGCTGTTTTATTGG 60.393 44.000 14.67 0.00 43.82 3.16
699 700 5.415701 GGTGAAGATCAGCTGTTTTATTGGA 59.584 40.000 14.67 0.00 41.34 3.53
700 701 6.071952 GGTGAAGATCAGCTGTTTTATTGGAA 60.072 38.462 14.67 0.00 41.34 3.53
701 702 7.025963 GTGAAGATCAGCTGTTTTATTGGAAG 58.974 38.462 14.67 0.00 0.00 3.46
702 703 6.716628 TGAAGATCAGCTGTTTTATTGGAAGT 59.283 34.615 14.67 0.00 0.00 3.01
703 704 6.749923 AGATCAGCTGTTTTATTGGAAGTC 57.250 37.500 14.67 0.00 0.00 3.01
704 705 5.352569 AGATCAGCTGTTTTATTGGAAGTCG 59.647 40.000 14.67 0.00 0.00 4.18
705 706 3.188460 TCAGCTGTTTTATTGGAAGTCGC 59.812 43.478 14.67 0.00 0.00 5.19
706 707 2.159627 AGCTGTTTTATTGGAAGTCGCG 59.840 45.455 0.00 0.00 0.00 5.87
707 708 2.505866 CTGTTTTATTGGAAGTCGCGC 58.494 47.619 0.00 0.00 0.00 6.86
708 709 2.147958 TGTTTTATTGGAAGTCGCGCT 58.852 42.857 5.56 0.00 0.00 5.92
709 710 3.327626 TGTTTTATTGGAAGTCGCGCTA 58.672 40.909 5.56 0.00 0.00 4.26
710 711 3.369756 TGTTTTATTGGAAGTCGCGCTAG 59.630 43.478 5.56 0.00 0.00 3.42
711 712 1.567504 TTATTGGAAGTCGCGCTAGC 58.432 50.000 5.56 4.06 40.74 3.42
712 713 0.744874 TATTGGAAGTCGCGCTAGCT 59.255 50.000 13.93 0.00 42.32 3.32
713 714 0.528684 ATTGGAAGTCGCGCTAGCTC 60.529 55.000 13.93 3.37 42.32 4.09
714 715 1.595993 TTGGAAGTCGCGCTAGCTCT 61.596 55.000 13.93 3.13 42.32 4.09
715 716 1.587613 GGAAGTCGCGCTAGCTCTG 60.588 63.158 13.93 2.14 42.32 3.35
716 717 1.587613 GAAGTCGCGCTAGCTCTGG 60.588 63.158 13.93 0.00 42.32 3.86
717 718 2.272918 GAAGTCGCGCTAGCTCTGGT 62.273 60.000 13.93 0.00 42.32 4.00
718 719 2.549611 AAGTCGCGCTAGCTCTGGTG 62.550 60.000 13.93 3.79 42.32 4.17
719 720 3.826754 TCGCGCTAGCTCTGGTGG 61.827 66.667 13.93 0.00 42.32 4.61
720 721 4.880537 CGCGCTAGCTCTGGTGGG 62.881 72.222 13.93 0.21 42.32 4.61
722 723 3.465403 CGCTAGCTCTGGTGGGCT 61.465 66.667 13.93 0.00 41.92 5.19
723 724 2.127869 CGCTAGCTCTGGTGGGCTA 61.128 63.158 13.93 0.00 39.65 3.93
725 726 4.707584 TAGCTCTGGTGGGCTAGG 57.292 61.111 0.00 0.00 39.65 3.02
726 727 1.075226 TAGCTCTGGTGGGCTAGGG 60.075 63.158 0.00 0.00 39.65 3.53
727 728 1.590339 TAGCTCTGGTGGGCTAGGGA 61.590 60.000 0.00 0.00 39.65 4.20
728 729 1.995626 GCTCTGGTGGGCTAGGGAA 60.996 63.158 0.00 0.00 0.00 3.97
729 730 1.977293 GCTCTGGTGGGCTAGGGAAG 61.977 65.000 0.00 0.00 0.00 3.46
730 731 1.306997 TCTGGTGGGCTAGGGAAGG 60.307 63.158 0.00 0.00 0.00 3.46
731 732 1.616628 CTGGTGGGCTAGGGAAGGT 60.617 63.158 0.00 0.00 0.00 3.50
732 733 0.326238 CTGGTGGGCTAGGGAAGGTA 60.326 60.000 0.00 0.00 0.00 3.08
733 734 0.326238 TGGTGGGCTAGGGAAGGTAG 60.326 60.000 0.00 0.00 0.00 3.18
734 735 1.697082 GGTGGGCTAGGGAAGGTAGC 61.697 65.000 0.00 0.00 41.96 3.58
735 736 0.981277 GTGGGCTAGGGAAGGTAGCA 60.981 60.000 4.62 0.00 44.08 3.49
736 737 0.981277 TGGGCTAGGGAAGGTAGCAC 60.981 60.000 4.62 1.08 45.66 4.40
737 738 1.697082 GGGCTAGGGAAGGTAGCACC 61.697 65.000 4.62 0.00 44.08 5.01
748 749 1.523758 GGTAGCACCTGTGAACTTGG 58.476 55.000 0.51 0.00 34.73 3.61
749 750 0.875059 GTAGCACCTGTGAACTTGGC 59.125 55.000 0.51 0.00 0.00 4.52
750 751 0.602638 TAGCACCTGTGAACTTGGCG 60.603 55.000 0.51 0.00 0.00 5.69
751 752 2.186826 GCACCTGTGAACTTGGCGT 61.187 57.895 0.51 0.00 0.00 5.68
752 753 1.724582 GCACCTGTGAACTTGGCGTT 61.725 55.000 0.51 0.00 38.91 4.84
766 767 3.654178 GCGTTCTCGGCCTGTATAA 57.346 52.632 0.00 0.00 37.56 0.98
767 768 2.150397 GCGTTCTCGGCCTGTATAAT 57.850 50.000 0.00 0.00 37.56 1.28
768 769 2.059541 GCGTTCTCGGCCTGTATAATC 58.940 52.381 0.00 0.00 37.56 1.75
769 770 2.673833 CGTTCTCGGCCTGTATAATCC 58.326 52.381 0.00 0.00 0.00 3.01
770 771 2.035449 CGTTCTCGGCCTGTATAATCCA 59.965 50.000 0.00 0.00 0.00 3.41
771 772 3.654414 GTTCTCGGCCTGTATAATCCAG 58.346 50.000 0.00 0.00 0.00 3.86
772 773 3.238788 TCTCGGCCTGTATAATCCAGA 57.761 47.619 0.00 0.00 31.38 3.86
773 774 3.779444 TCTCGGCCTGTATAATCCAGAT 58.221 45.455 0.00 0.00 31.38 2.90
774 775 4.930696 TCTCGGCCTGTATAATCCAGATA 58.069 43.478 0.00 0.00 31.38 1.98
775 776 4.950475 TCTCGGCCTGTATAATCCAGATAG 59.050 45.833 0.00 0.00 31.38 2.08
776 777 4.023980 TCGGCCTGTATAATCCAGATAGG 58.976 47.826 0.00 0.00 39.47 2.57
777 778 3.133003 CGGCCTGTATAATCCAGATAGGG 59.867 52.174 0.00 0.00 38.24 3.53
778 779 3.118223 GGCCTGTATAATCCAGATAGGGC 60.118 52.174 0.00 0.00 41.24 5.19
779 780 3.118223 GCCTGTATAATCCAGATAGGGCC 60.118 52.174 0.00 0.00 38.24 5.80
780 781 3.133003 CCTGTATAATCCAGATAGGGCCG 59.867 52.174 0.00 0.00 38.24 6.13
781 782 3.769844 CTGTATAATCCAGATAGGGCCGT 59.230 47.826 2.24 2.24 38.24 5.68
782 783 3.513912 TGTATAATCCAGATAGGGCCGTG 59.486 47.826 8.57 0.00 38.24 4.94
783 784 0.685097 TAATCCAGATAGGGCCGTGC 59.315 55.000 8.57 0.00 38.24 5.34
784 785 1.056700 AATCCAGATAGGGCCGTGCT 61.057 55.000 8.57 2.30 38.24 4.40
785 786 1.762522 ATCCAGATAGGGCCGTGCTG 61.763 60.000 18.06 18.06 38.24 4.41
786 787 2.109799 CAGATAGGGCCGTGCTGG 59.890 66.667 17.51 0.00 42.50 4.85
787 788 3.164269 AGATAGGGCCGTGCTGGG 61.164 66.667 8.57 0.00 38.63 4.45
805 806 4.413928 CCATTCGGCCTGGTTTGA 57.586 55.556 0.00 0.00 0.00 2.69
806 807 2.652313 CCATTCGGCCTGGTTTGAA 58.348 52.632 0.00 0.00 0.00 2.69
807 808 1.185315 CCATTCGGCCTGGTTTGAAT 58.815 50.000 0.00 0.00 0.00 2.57
808 809 1.135024 CCATTCGGCCTGGTTTGAATG 60.135 52.381 20.83 20.83 44.49 2.67
809 810 1.545582 CATTCGGCCTGGTTTGAATGT 59.454 47.619 20.09 0.00 41.58 2.71
810 811 0.958091 TTCGGCCTGGTTTGAATGTG 59.042 50.000 0.00 0.00 0.00 3.21
811 812 0.109532 TCGGCCTGGTTTGAATGTGA 59.890 50.000 0.00 0.00 0.00 3.58
812 813 0.958091 CGGCCTGGTTTGAATGTGAA 59.042 50.000 0.00 0.00 0.00 3.18
813 814 1.335872 CGGCCTGGTTTGAATGTGAAC 60.336 52.381 0.00 0.00 0.00 3.18
814 815 1.000843 GGCCTGGTTTGAATGTGAACC 59.999 52.381 0.00 0.00 44.40 3.62
815 816 1.000843 GCCTGGTTTGAATGTGAACCC 59.999 52.381 0.00 0.00 43.69 4.11
816 817 1.269448 CCTGGTTTGAATGTGAACCCG 59.731 52.381 3.09 0.00 43.69 5.28
817 818 1.269448 CTGGTTTGAATGTGAACCCGG 59.731 52.381 0.00 0.00 43.69 5.73
818 819 1.133761 TGGTTTGAATGTGAACCCGGA 60.134 47.619 0.73 0.00 43.69 5.14
819 820 1.268625 GGTTTGAATGTGAACCCGGAC 59.731 52.381 0.73 0.00 39.49 4.79
820 821 1.950909 GTTTGAATGTGAACCCGGACA 59.049 47.619 0.73 0.00 0.00 4.02
821 822 2.350057 TTGAATGTGAACCCGGACAA 57.650 45.000 0.73 0.00 0.00 3.18
822 823 2.350057 TGAATGTGAACCCGGACAAA 57.650 45.000 0.73 0.00 0.00 2.83
823 824 2.226330 TGAATGTGAACCCGGACAAAG 58.774 47.619 0.73 0.00 0.00 2.77
824 825 2.227194 GAATGTGAACCCGGACAAAGT 58.773 47.619 0.73 0.00 0.00 2.66
825 826 1.604604 ATGTGAACCCGGACAAAGTG 58.395 50.000 0.73 0.00 0.00 3.16
826 827 0.464735 TGTGAACCCGGACAAAGTGG 60.465 55.000 0.73 0.00 0.00 4.00
827 828 0.179040 GTGAACCCGGACAAAGTGGA 60.179 55.000 0.73 0.00 0.00 4.02
828 829 0.179040 TGAACCCGGACAAAGTGGAC 60.179 55.000 0.73 0.00 0.00 4.02
829 830 0.887836 GAACCCGGACAAAGTGGACC 60.888 60.000 0.73 0.00 0.00 4.46
830 831 2.033602 CCCGGACAAAGTGGACCC 59.966 66.667 0.73 0.00 0.00 4.46
831 832 2.033602 CCGGACAAAGTGGACCCC 59.966 66.667 0.00 0.00 0.00 4.95
832 833 2.526046 CCGGACAAAGTGGACCCCT 61.526 63.158 0.00 0.00 0.00 4.79
833 834 1.003718 CGGACAAAGTGGACCCCTC 60.004 63.158 0.00 0.00 0.00 4.30
834 835 1.481056 CGGACAAAGTGGACCCCTCT 61.481 60.000 0.00 0.00 0.00 3.69
835 836 0.771755 GGACAAAGTGGACCCCTCTT 59.228 55.000 0.00 0.00 38.74 2.85
836 837 1.145119 GGACAAAGTGGACCCCTCTTT 59.855 52.381 7.10 7.10 44.75 2.52
837 838 2.505405 GACAAAGTGGACCCCTCTTTC 58.495 52.381 9.35 0.00 42.89 2.62
838 839 1.145119 ACAAAGTGGACCCCTCTTTCC 59.855 52.381 9.35 0.00 42.89 3.13
839 840 1.144913 CAAAGTGGACCCCTCTTTCCA 59.855 52.381 9.35 0.00 42.89 3.53
840 841 1.529744 AAGTGGACCCCTCTTTCCAA 58.470 50.000 0.00 0.00 43.67 3.53
841 842 1.529744 AGTGGACCCCTCTTTCCAAA 58.470 50.000 0.00 0.00 43.67 3.28
842 843 1.145119 AGTGGACCCCTCTTTCCAAAC 59.855 52.381 0.00 0.00 43.67 2.93
843 844 1.133606 GTGGACCCCTCTTTCCAAACA 60.134 52.381 0.00 0.00 43.67 2.83
844 845 1.133606 TGGACCCCTCTTTCCAAACAC 60.134 52.381 0.00 0.00 39.04 3.32
845 846 1.235724 GACCCCTCTTTCCAAACACG 58.764 55.000 0.00 0.00 0.00 4.49
846 847 0.822121 ACCCCTCTTTCCAAACACGC 60.822 55.000 0.00 0.00 0.00 5.34
847 848 1.524008 CCCCTCTTTCCAAACACGCC 61.524 60.000 0.00 0.00 0.00 5.68
848 849 1.524008 CCCTCTTTCCAAACACGCCC 61.524 60.000 0.00 0.00 0.00 6.13
849 850 0.821711 CCTCTTTCCAAACACGCCCA 60.822 55.000 0.00 0.00 0.00 5.36
850 851 1.028905 CTCTTTCCAAACACGCCCAA 58.971 50.000 0.00 0.00 0.00 4.12
851 852 1.407258 CTCTTTCCAAACACGCCCAAA 59.593 47.619 0.00 0.00 0.00 3.28
852 853 1.407258 TCTTTCCAAACACGCCCAAAG 59.593 47.619 0.00 0.00 0.00 2.77
853 854 1.407258 CTTTCCAAACACGCCCAAAGA 59.593 47.619 0.00 0.00 0.00 2.52
854 855 1.475403 TTCCAAACACGCCCAAAGAA 58.525 45.000 0.00 0.00 0.00 2.52
855 856 1.698506 TCCAAACACGCCCAAAGAAT 58.301 45.000 0.00 0.00 0.00 2.40
856 857 2.035632 TCCAAACACGCCCAAAGAATT 58.964 42.857 0.00 0.00 0.00 2.17
857 858 2.432510 TCCAAACACGCCCAAAGAATTT 59.567 40.909 0.00 0.00 40.26 1.82
858 859 2.799978 CCAAACACGCCCAAAGAATTTC 59.200 45.455 0.00 0.00 35.03 2.17
859 860 2.799978 CAAACACGCCCAAAGAATTTCC 59.200 45.455 0.00 0.00 35.03 3.13
860 861 0.596082 ACACGCCCAAAGAATTTCCG 59.404 50.000 0.00 0.00 35.03 4.30
861 862 0.109319 CACGCCCAAAGAATTTCCGG 60.109 55.000 0.00 0.00 35.03 5.14
862 863 0.250989 ACGCCCAAAGAATTTCCGGA 60.251 50.000 0.00 0.00 35.03 5.14
863 864 0.451783 CGCCCAAAGAATTTCCGGAG 59.548 55.000 3.34 0.00 35.03 4.63
864 865 0.173481 GCCCAAAGAATTTCCGGAGC 59.827 55.000 3.34 0.00 35.03 4.70
865 866 1.839424 CCCAAAGAATTTCCGGAGCT 58.161 50.000 3.34 0.00 35.03 4.09
866 867 2.944094 GCCCAAAGAATTTCCGGAGCTA 60.944 50.000 3.34 0.00 35.03 3.32
867 868 2.683362 CCCAAAGAATTTCCGGAGCTAC 59.317 50.000 3.34 0.00 35.03 3.58
868 869 2.683362 CCAAAGAATTTCCGGAGCTACC 59.317 50.000 3.34 0.00 35.03 3.18
869 870 3.610911 CAAAGAATTTCCGGAGCTACCT 58.389 45.455 3.34 0.00 35.03 3.08
870 871 4.383770 CCAAAGAATTTCCGGAGCTACCTA 60.384 45.833 3.34 0.00 35.03 3.08
871 872 5.183228 CAAAGAATTTCCGGAGCTACCTAA 58.817 41.667 3.34 0.00 35.03 2.69
872 873 5.431179 AAGAATTTCCGGAGCTACCTAAA 57.569 39.130 3.34 0.00 36.31 1.85
873 874 5.431179 AGAATTTCCGGAGCTACCTAAAA 57.569 39.130 3.34 0.00 36.31 1.52
874 875 5.812286 AGAATTTCCGGAGCTACCTAAAAA 58.188 37.500 3.34 0.00 36.31 1.94
922 923 3.554259 AAAAGAATTTCGGGAGCGAAC 57.446 42.857 0.00 0.00 37.28 3.95
923 924 1.076332 AAGAATTTCGGGAGCGAACG 58.924 50.000 0.00 0.00 0.00 3.95
924 925 1.060465 GAATTTCGGGAGCGAACGC 59.940 57.895 11.31 11.31 42.33 4.84
1331 1338 4.444024 GATGAAGCGCGCGTGCAA 62.444 61.111 41.62 28.25 42.97 4.08
1349 1356 1.072965 CAAGAGCCCCAACAAGACTCT 59.927 52.381 0.00 0.00 39.34 3.24
1353 1360 0.951040 GCCCCAACAAGACTCTGACG 60.951 60.000 0.00 0.00 0.00 4.35
1354 1361 0.679505 CCCCAACAAGACTCTGACGA 59.320 55.000 0.00 0.00 0.00 4.20
1361 1368 1.128878 CAAGACTCTGACGACGACGAT 59.871 52.381 15.32 0.00 42.66 3.73
1362 1369 0.722282 AGACTCTGACGACGACGATG 59.278 55.000 15.32 3.64 42.66 3.84
1363 1370 0.720027 GACTCTGACGACGACGATGA 59.280 55.000 15.32 7.72 42.66 2.92
1364 1371 0.443088 ACTCTGACGACGACGATGAC 59.557 55.000 15.32 3.31 42.66 3.06
1365 1372 0.584297 CTCTGACGACGACGATGACG 60.584 60.000 15.32 4.49 42.66 4.35
1366 1373 1.010419 TCTGACGACGACGATGACGA 61.010 55.000 15.32 0.34 42.66 4.20
1520 1530 3.052082 GTCGTCGGAGTGGTCGGA 61.052 66.667 0.00 0.00 0.00 4.55
1529 1539 1.755393 GAGTGGTCGGACCCAAGTGT 61.755 60.000 23.81 2.51 37.50 3.55
1532 1542 1.004918 GGTCGGACCCAAGTGTGAG 60.005 63.158 16.55 0.00 30.04 3.51
1580 1596 2.244651 CCAGCATTACTACGGCGGC 61.245 63.158 13.24 0.00 0.00 6.53
1671 1687 2.225167 GGAGAAGGTCCCGAGGATAGAT 60.225 54.545 0.00 0.00 39.88 1.98
1718 1734 1.645710 AGGAGTTCTTGGACCGTGAT 58.354 50.000 0.00 0.00 0.00 3.06
1913 1929 2.867109 ACCAGAGAAGAACACATGGG 57.133 50.000 0.00 0.00 31.95 4.00
1984 2000 1.250328 CCTGCATTTTGCTCCAGTGA 58.750 50.000 0.75 0.00 45.31 3.41
2013 2029 3.114606 TGGGTTCATCTTCATGCTAGGA 58.885 45.455 0.00 0.00 0.00 2.94
2031 2047 1.064758 GGATGTAATCTGTGGTGGGCA 60.065 52.381 0.00 0.00 44.71 5.36
2090 2106 6.675026 ACATGTGATGTTTTCTTCTGTCATG 58.325 36.000 0.00 0.00 41.63 3.07
2623 5224 9.469807 AAATATAGAAGTATGAAGCGACAGAAG 57.530 33.333 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 9.612066 ACCATTTTTCAAATACTTGTTCAACAT 57.388 25.926 0.00 0.00 33.94 2.71
100 101 7.118496 CATTTACCCAAATGGCTTATTACCA 57.882 36.000 2.79 0.00 44.88 3.25
180 181 8.556194 GCCTGAACATTTTATATACACGATCAA 58.444 33.333 0.00 0.00 0.00 2.57
181 182 7.713073 TGCCTGAACATTTTATATACACGATCA 59.287 33.333 0.00 0.00 0.00 2.92
182 183 8.083462 TGCCTGAACATTTTATATACACGATC 57.917 34.615 0.00 0.00 0.00 3.69
183 184 8.342634 GTTGCCTGAACATTTTATATACACGAT 58.657 33.333 0.00 0.00 34.35 3.73
184 185 7.334671 TGTTGCCTGAACATTTTATATACACGA 59.665 33.333 0.00 0.00 39.78 4.35
185 186 7.468441 TGTTGCCTGAACATTTTATATACACG 58.532 34.615 0.00 0.00 39.78 4.49
199 200 6.660887 TTTTCTTTCAAATGTTGCCTGAAC 57.339 33.333 0.00 0.00 34.84 3.18
200 201 6.878389 ACTTTTTCTTTCAAATGTTGCCTGAA 59.122 30.769 0.00 0.00 0.00 3.02
201 202 6.405538 ACTTTTTCTTTCAAATGTTGCCTGA 58.594 32.000 0.00 0.00 0.00 3.86
202 203 6.667007 ACTTTTTCTTTCAAATGTTGCCTG 57.333 33.333 0.00 0.00 0.00 4.85
203 204 6.878389 TCAACTTTTTCTTTCAAATGTTGCCT 59.122 30.769 15.11 0.00 44.13 4.75
204 205 7.071014 TCAACTTTTTCTTTCAAATGTTGCC 57.929 32.000 15.11 0.00 44.13 4.52
205 206 8.014517 TGTTCAACTTTTTCTTTCAAATGTTGC 58.985 29.630 15.11 7.36 44.13 4.17
206 207 9.875675 TTGTTCAACTTTTTCTTTCAAATGTTG 57.124 25.926 14.29 14.29 44.94 3.33
208 209 9.271828 ACTTGTTCAACTTTTTCTTTCAAATGT 57.728 25.926 0.00 0.00 0.00 2.71
209 210 9.532697 CACTTGTTCAACTTTTTCTTTCAAATG 57.467 29.630 0.00 0.00 0.00 2.32
210 211 9.271828 ACACTTGTTCAACTTTTTCTTTCAAAT 57.728 25.926 0.00 0.00 0.00 2.32
211 212 8.655651 ACACTTGTTCAACTTTTTCTTTCAAA 57.344 26.923 0.00 0.00 0.00 2.69
212 213 8.655651 AACACTTGTTCAACTTTTTCTTTCAA 57.344 26.923 0.00 0.00 31.64 2.69
229 230 9.825972 CTTGATTAACATTATTCGAACACTTGT 57.174 29.630 0.00 0.00 0.00 3.16
230 231 8.788813 GCTTGATTAACATTATTCGAACACTTG 58.211 33.333 0.00 0.00 0.00 3.16
231 232 7.692291 CGCTTGATTAACATTATTCGAACACTT 59.308 33.333 0.00 0.00 0.00 3.16
232 233 7.148474 ACGCTTGATTAACATTATTCGAACACT 60.148 33.333 0.00 0.00 0.00 3.55
233 234 6.959311 ACGCTTGATTAACATTATTCGAACAC 59.041 34.615 0.00 0.00 0.00 3.32
234 235 7.067532 ACGCTTGATTAACATTATTCGAACA 57.932 32.000 0.00 0.00 0.00 3.18
235 236 7.948513 AACGCTTGATTAACATTATTCGAAC 57.051 32.000 0.00 0.00 0.00 3.95
236 237 7.483375 CCAAACGCTTGATTAACATTATTCGAA 59.517 33.333 0.00 0.00 34.14 3.71
237 238 6.964370 CCAAACGCTTGATTAACATTATTCGA 59.036 34.615 0.00 0.00 34.14 3.71
238 239 6.964370 TCCAAACGCTTGATTAACATTATTCG 59.036 34.615 0.00 0.00 34.14 3.34
239 240 8.682128 TTCCAAACGCTTGATTAACATTATTC 57.318 30.769 0.00 0.00 34.14 1.75
240 241 9.482627 TTTTCCAAACGCTTGATTAACATTATT 57.517 25.926 0.00 0.00 34.14 1.40
241 242 9.651913 ATTTTCCAAACGCTTGATTAACATTAT 57.348 25.926 0.00 0.00 34.14 1.28
242 243 8.920665 CATTTTCCAAACGCTTGATTAACATTA 58.079 29.630 0.00 0.00 34.14 1.90
243 244 7.440856 ACATTTTCCAAACGCTTGATTAACATT 59.559 29.630 0.00 0.00 34.14 2.71
244 245 6.928492 ACATTTTCCAAACGCTTGATTAACAT 59.072 30.769 0.00 0.00 34.14 2.71
245 246 6.276847 ACATTTTCCAAACGCTTGATTAACA 58.723 32.000 0.00 0.00 34.14 2.41
246 247 6.763303 ACATTTTCCAAACGCTTGATTAAC 57.237 33.333 0.00 0.00 34.14 2.01
247 248 8.873215 TTAACATTTTCCAAACGCTTGATTAA 57.127 26.923 0.00 0.00 34.14 1.40
248 249 8.873215 TTTAACATTTTCCAAACGCTTGATTA 57.127 26.923 0.00 0.00 34.14 1.75
249 250 7.778470 TTTAACATTTTCCAAACGCTTGATT 57.222 28.000 0.00 0.00 34.14 2.57
250 251 7.961325 ATTTAACATTTTCCAAACGCTTGAT 57.039 28.000 0.00 0.00 34.14 2.57
251 252 8.920665 CATATTTAACATTTTCCAAACGCTTGA 58.079 29.630 0.00 0.00 34.14 3.02
252 253 8.707839 ACATATTTAACATTTTCCAAACGCTTG 58.292 29.630 0.00 0.00 0.00 4.01
253 254 8.825667 ACATATTTAACATTTTCCAAACGCTT 57.174 26.923 0.00 0.00 0.00 4.68
388 389 9.328845 ACACATTTTTCAAATGCTTGATTAACT 57.671 25.926 8.77 0.00 41.22 2.24
397 398 9.979578 TGTTTCTATACACATTTTTCAAATGCT 57.020 25.926 8.77 0.00 0.00 3.79
524 525 9.605955 CTGTTTTCTTTTTCGGTTTTGATTTTT 57.394 25.926 0.00 0.00 0.00 1.94
525 526 8.994170 TCTGTTTTCTTTTTCGGTTTTGATTTT 58.006 25.926 0.00 0.00 0.00 1.82
526 527 8.541133 TCTGTTTTCTTTTTCGGTTTTGATTT 57.459 26.923 0.00 0.00 0.00 2.17
527 528 8.541133 TTCTGTTTTCTTTTTCGGTTTTGATT 57.459 26.923 0.00 0.00 0.00 2.57
528 529 8.716646 ATTCTGTTTTCTTTTTCGGTTTTGAT 57.283 26.923 0.00 0.00 0.00 2.57
529 530 9.640963 TTATTCTGTTTTCTTTTTCGGTTTTGA 57.359 25.926 0.00 0.00 0.00 2.69
532 533 8.875803 GGTTTATTCTGTTTTCTTTTTCGGTTT 58.124 29.630 0.00 0.00 0.00 3.27
533 534 8.035984 TGGTTTATTCTGTTTTCTTTTTCGGTT 58.964 29.630 0.00 0.00 0.00 4.44
534 535 7.548967 TGGTTTATTCTGTTTTCTTTTTCGGT 58.451 30.769 0.00 0.00 0.00 4.69
535 536 7.995463 TGGTTTATTCTGTTTTCTTTTTCGG 57.005 32.000 0.00 0.00 0.00 4.30
565 566 8.729805 TGCATTTGTTTCTTCAGGTTATTTTT 57.270 26.923 0.00 0.00 0.00 1.94
566 567 8.729805 TTGCATTTGTTTCTTCAGGTTATTTT 57.270 26.923 0.00 0.00 0.00 1.82
567 568 8.729805 TTTGCATTTGTTTCTTCAGGTTATTT 57.270 26.923 0.00 0.00 0.00 1.40
568 569 8.729805 TTTTGCATTTGTTTCTTCAGGTTATT 57.270 26.923 0.00 0.00 0.00 1.40
569 570 8.729805 TTTTTGCATTTGTTTCTTCAGGTTAT 57.270 26.923 0.00 0.00 0.00 1.89
570 571 8.729805 ATTTTTGCATTTGTTTCTTCAGGTTA 57.270 26.923 0.00 0.00 0.00 2.85
571 572 7.628769 ATTTTTGCATTTGTTTCTTCAGGTT 57.371 28.000 0.00 0.00 0.00 3.50
572 573 8.611757 GTTATTTTTGCATTTGTTTCTTCAGGT 58.388 29.630 0.00 0.00 0.00 4.00
573 574 7.793427 CGTTATTTTTGCATTTGTTTCTTCAGG 59.207 33.333 0.00 0.00 0.00 3.86
574 575 8.538856 TCGTTATTTTTGCATTTGTTTCTTCAG 58.461 29.630 0.00 0.00 0.00 3.02
575 576 8.412608 TCGTTATTTTTGCATTTGTTTCTTCA 57.587 26.923 0.00 0.00 0.00 3.02
576 577 9.695884 TTTCGTTATTTTTGCATTTGTTTCTTC 57.304 25.926 0.00 0.00 0.00 2.87
622 623 7.820386 ACCGTTTTCCTGTTTTATTCAGTTTTT 59.180 29.630 0.00 0.00 0.00 1.94
623 624 7.276878 CACCGTTTTCCTGTTTTATTCAGTTTT 59.723 33.333 0.00 0.00 0.00 2.43
624 625 6.754675 CACCGTTTTCCTGTTTTATTCAGTTT 59.245 34.615 0.00 0.00 0.00 2.66
625 626 6.270064 CACCGTTTTCCTGTTTTATTCAGTT 58.730 36.000 0.00 0.00 0.00 3.16
626 627 5.221165 CCACCGTTTTCCTGTTTTATTCAGT 60.221 40.000 0.00 0.00 0.00 3.41
627 628 5.009210 TCCACCGTTTTCCTGTTTTATTCAG 59.991 40.000 0.00 0.00 0.00 3.02
628 629 4.888239 TCCACCGTTTTCCTGTTTTATTCA 59.112 37.500 0.00 0.00 0.00 2.57
629 630 5.239963 TCTCCACCGTTTTCCTGTTTTATTC 59.760 40.000 0.00 0.00 0.00 1.75
630 631 5.134661 TCTCCACCGTTTTCCTGTTTTATT 58.865 37.500 0.00 0.00 0.00 1.40
631 632 4.721132 TCTCCACCGTTTTCCTGTTTTAT 58.279 39.130 0.00 0.00 0.00 1.40
632 633 4.153673 TCTCCACCGTTTTCCTGTTTTA 57.846 40.909 0.00 0.00 0.00 1.52
633 634 3.007473 TCTCCACCGTTTTCCTGTTTT 57.993 42.857 0.00 0.00 0.00 2.43
634 635 2.721425 TCTCCACCGTTTTCCTGTTT 57.279 45.000 0.00 0.00 0.00 2.83
635 636 2.171870 TCTTCTCCACCGTTTTCCTGTT 59.828 45.455 0.00 0.00 0.00 3.16
636 637 1.766496 TCTTCTCCACCGTTTTCCTGT 59.234 47.619 0.00 0.00 0.00 4.00
637 638 2.543777 TCTTCTCCACCGTTTTCCTG 57.456 50.000 0.00 0.00 0.00 3.86
638 639 2.637872 TGATCTTCTCCACCGTTTTCCT 59.362 45.455 0.00 0.00 0.00 3.36
639 640 3.003480 CTGATCTTCTCCACCGTTTTCC 58.997 50.000 0.00 0.00 0.00 3.13
640 641 2.416893 GCTGATCTTCTCCACCGTTTTC 59.583 50.000 0.00 0.00 0.00 2.29
641 642 2.039084 AGCTGATCTTCTCCACCGTTTT 59.961 45.455 0.00 0.00 0.00 2.43
642 643 1.625818 AGCTGATCTTCTCCACCGTTT 59.374 47.619 0.00 0.00 0.00 3.60
643 644 1.270907 AGCTGATCTTCTCCACCGTT 58.729 50.000 0.00 0.00 0.00 4.44
644 645 1.270907 AAGCTGATCTTCTCCACCGT 58.729 50.000 0.00 0.00 0.00 4.83
645 646 2.393271 AAAGCTGATCTTCTCCACCG 57.607 50.000 0.00 0.00 32.88 4.94
667 668 1.269448 GCTGATCTTCACCCGCAAAAA 59.731 47.619 0.00 0.00 0.00 1.94
668 669 0.881118 GCTGATCTTCACCCGCAAAA 59.119 50.000 0.00 0.00 0.00 2.44
669 670 0.036732 AGCTGATCTTCACCCGCAAA 59.963 50.000 0.00 0.00 0.00 3.68
670 671 0.674581 CAGCTGATCTTCACCCGCAA 60.675 55.000 8.42 0.00 0.00 4.85
671 672 1.078918 CAGCTGATCTTCACCCGCA 60.079 57.895 8.42 0.00 0.00 5.69
672 673 0.674895 AACAGCTGATCTTCACCCGC 60.675 55.000 23.35 0.00 0.00 6.13
673 674 1.813513 AAACAGCTGATCTTCACCCG 58.186 50.000 23.35 0.00 0.00 5.28
674 675 5.393461 CCAATAAAACAGCTGATCTTCACCC 60.393 44.000 23.35 0.00 0.00 4.61
675 676 5.415701 TCCAATAAAACAGCTGATCTTCACC 59.584 40.000 23.35 0.00 0.00 4.02
676 677 6.500684 TCCAATAAAACAGCTGATCTTCAC 57.499 37.500 23.35 0.00 0.00 3.18
677 678 6.716628 ACTTCCAATAAAACAGCTGATCTTCA 59.283 34.615 23.35 0.04 0.00 3.02
678 679 7.150783 ACTTCCAATAAAACAGCTGATCTTC 57.849 36.000 23.35 0.00 0.00 2.87
679 680 6.128172 CGACTTCCAATAAAACAGCTGATCTT 60.128 38.462 23.35 12.36 0.00 2.40
680 681 5.352569 CGACTTCCAATAAAACAGCTGATCT 59.647 40.000 23.35 6.07 0.00 2.75
681 682 5.563842 CGACTTCCAATAAAACAGCTGATC 58.436 41.667 23.35 0.00 0.00 2.92
682 683 4.142600 GCGACTTCCAATAAAACAGCTGAT 60.143 41.667 23.35 5.41 0.00 2.90
683 684 3.188460 GCGACTTCCAATAAAACAGCTGA 59.812 43.478 23.35 0.00 0.00 4.26
684 685 3.492313 GCGACTTCCAATAAAACAGCTG 58.508 45.455 13.48 13.48 0.00 4.24
685 686 2.159627 CGCGACTTCCAATAAAACAGCT 59.840 45.455 0.00 0.00 0.00 4.24
686 687 2.505866 CGCGACTTCCAATAAAACAGC 58.494 47.619 0.00 0.00 0.00 4.40
687 688 2.159627 AGCGCGACTTCCAATAAAACAG 59.840 45.455 12.10 0.00 0.00 3.16
688 689 2.147958 AGCGCGACTTCCAATAAAACA 58.852 42.857 12.10 0.00 0.00 2.83
689 690 2.894307 AGCGCGACTTCCAATAAAAC 57.106 45.000 12.10 0.00 0.00 2.43
690 691 2.350498 GCTAGCGCGACTTCCAATAAAA 59.650 45.455 12.10 0.00 0.00 1.52
691 692 1.931172 GCTAGCGCGACTTCCAATAAA 59.069 47.619 12.10 0.00 0.00 1.40
692 693 1.136305 AGCTAGCGCGACTTCCAATAA 59.864 47.619 12.10 0.00 42.32 1.40
693 694 0.744874 AGCTAGCGCGACTTCCAATA 59.255 50.000 12.10 0.00 42.32 1.90
694 695 0.528684 GAGCTAGCGCGACTTCCAAT 60.529 55.000 12.10 0.00 42.32 3.16
695 696 1.153823 GAGCTAGCGCGACTTCCAA 60.154 57.895 12.10 0.00 42.32 3.53
696 697 2.046864 AGAGCTAGCGCGACTTCCA 61.047 57.895 12.10 0.00 42.32 3.53
697 698 1.587613 CAGAGCTAGCGCGACTTCC 60.588 63.158 12.10 1.29 42.32 3.46
698 699 1.587613 CCAGAGCTAGCGCGACTTC 60.588 63.158 12.10 1.94 42.32 3.01
699 700 2.344203 ACCAGAGCTAGCGCGACTT 61.344 57.895 12.10 0.00 42.32 3.01
700 701 2.752238 ACCAGAGCTAGCGCGACT 60.752 61.111 12.10 9.58 42.32 4.18
701 702 2.580867 CACCAGAGCTAGCGCGAC 60.581 66.667 12.10 0.04 42.32 5.19
702 703 3.826754 CCACCAGAGCTAGCGCGA 61.827 66.667 12.10 0.00 42.32 5.87
703 704 4.880537 CCCACCAGAGCTAGCGCG 62.881 72.222 13.04 0.00 42.32 6.86
705 706 2.127869 TAGCCCACCAGAGCTAGCG 61.128 63.158 9.55 0.00 40.56 4.26
706 707 3.956377 TAGCCCACCAGAGCTAGC 58.044 61.111 6.62 6.62 40.56 3.42
708 709 1.075226 CCCTAGCCCACCAGAGCTA 60.075 63.158 0.00 0.00 40.56 3.32
709 710 2.366167 CCCTAGCCCACCAGAGCT 60.366 66.667 0.00 0.00 43.20 4.09
710 711 1.977293 CTTCCCTAGCCCACCAGAGC 61.977 65.000 0.00 0.00 0.00 4.09
711 712 1.341156 CCTTCCCTAGCCCACCAGAG 61.341 65.000 0.00 0.00 0.00 3.35
712 713 1.306997 CCTTCCCTAGCCCACCAGA 60.307 63.158 0.00 0.00 0.00 3.86
713 714 0.326238 TACCTTCCCTAGCCCACCAG 60.326 60.000 0.00 0.00 0.00 4.00
714 715 0.326238 CTACCTTCCCTAGCCCACCA 60.326 60.000 0.00 0.00 0.00 4.17
715 716 1.697082 GCTACCTTCCCTAGCCCACC 61.697 65.000 0.00 0.00 31.94 4.61
716 717 0.981277 TGCTACCTTCCCTAGCCCAC 60.981 60.000 0.00 0.00 36.54 4.61
717 718 0.981277 GTGCTACCTTCCCTAGCCCA 60.981 60.000 0.00 0.00 36.54 5.36
718 719 1.697082 GGTGCTACCTTCCCTAGCCC 61.697 65.000 0.00 0.00 36.54 5.19
719 720 1.830836 GGTGCTACCTTCCCTAGCC 59.169 63.158 0.00 0.00 36.54 3.93
729 730 1.523758 CCAAGTTCACAGGTGCTACC 58.476 55.000 0.00 0.00 38.99 3.18
730 731 0.875059 GCCAAGTTCACAGGTGCTAC 59.125 55.000 0.00 0.00 0.00 3.58
731 732 0.602638 CGCCAAGTTCACAGGTGCTA 60.603 55.000 0.00 0.00 0.00 3.49
732 733 1.893808 CGCCAAGTTCACAGGTGCT 60.894 57.895 0.00 0.00 0.00 4.40
733 734 1.724582 AACGCCAAGTTCACAGGTGC 61.725 55.000 0.00 0.00 39.16 5.01
734 735 2.404083 AACGCCAAGTTCACAGGTG 58.596 52.632 0.00 0.00 39.16 4.00
735 736 4.977393 AACGCCAAGTTCACAGGT 57.023 50.000 0.00 0.00 39.16 4.00
743 744 3.626924 AGGCCGAGAACGCCAAGT 61.627 61.111 0.00 0.00 37.85 3.16
744 745 2.501223 TACAGGCCGAGAACGCCAAG 62.501 60.000 0.00 0.00 37.85 3.61
745 746 1.895020 ATACAGGCCGAGAACGCCAA 61.895 55.000 0.00 0.00 37.85 4.52
746 747 1.038681 TATACAGGCCGAGAACGCCA 61.039 55.000 0.00 0.00 37.85 5.69
747 748 0.103572 TTATACAGGCCGAGAACGCC 59.896 55.000 0.00 0.00 38.29 5.68
748 749 2.059541 GATTATACAGGCCGAGAACGC 58.940 52.381 0.00 0.00 38.29 4.84
749 750 2.035449 TGGATTATACAGGCCGAGAACG 59.965 50.000 0.00 0.00 39.43 3.95
750 751 3.321111 TCTGGATTATACAGGCCGAGAAC 59.679 47.826 4.40 0.00 36.62 3.01
751 752 3.572642 TCTGGATTATACAGGCCGAGAA 58.427 45.455 4.40 0.00 36.62 2.87
752 753 3.238788 TCTGGATTATACAGGCCGAGA 57.761 47.619 4.40 0.00 36.62 4.04
753 754 4.098654 CCTATCTGGATTATACAGGCCGAG 59.901 50.000 4.40 0.00 38.35 4.63
754 755 4.023980 CCTATCTGGATTATACAGGCCGA 58.976 47.826 4.40 0.00 38.35 5.54
755 756 3.133003 CCCTATCTGGATTATACAGGCCG 59.867 52.174 4.40 0.00 38.35 6.13
756 757 3.118223 GCCCTATCTGGATTATACAGGCC 60.118 52.174 4.40 0.00 38.35 5.19
757 758 3.118223 GGCCCTATCTGGATTATACAGGC 60.118 52.174 4.40 0.25 38.35 4.85
758 759 3.133003 CGGCCCTATCTGGATTATACAGG 59.867 52.174 4.40 0.00 38.35 4.00
759 760 3.769844 ACGGCCCTATCTGGATTATACAG 59.230 47.826 0.00 0.00 38.35 2.74
760 761 3.513912 CACGGCCCTATCTGGATTATACA 59.486 47.826 0.00 0.00 38.35 2.29
761 762 3.679083 GCACGGCCCTATCTGGATTATAC 60.679 52.174 0.00 0.00 38.35 1.47
762 763 2.500098 GCACGGCCCTATCTGGATTATA 59.500 50.000 0.00 0.00 38.35 0.98
763 764 1.279271 GCACGGCCCTATCTGGATTAT 59.721 52.381 0.00 0.00 38.35 1.28
764 765 0.685097 GCACGGCCCTATCTGGATTA 59.315 55.000 0.00 0.00 38.35 1.75
765 766 1.056700 AGCACGGCCCTATCTGGATT 61.057 55.000 0.00 0.00 38.35 3.01
766 767 1.460305 AGCACGGCCCTATCTGGAT 60.460 57.895 0.00 0.00 38.35 3.41
767 768 2.041922 AGCACGGCCCTATCTGGA 60.042 61.111 0.00 0.00 38.35 3.86
768 769 2.109799 CAGCACGGCCCTATCTGG 59.890 66.667 0.00 0.00 0.00 3.86
769 770 2.109799 CCAGCACGGCCCTATCTG 59.890 66.667 0.00 0.00 0.00 2.90
770 771 3.164269 CCCAGCACGGCCCTATCT 61.164 66.667 0.00 0.00 0.00 1.98
771 772 4.937431 GCCCAGCACGGCCCTATC 62.937 72.222 0.00 0.00 43.66 2.08
788 789 1.135024 CATTCAAACCAGGCCGAATGG 60.135 52.381 16.68 13.06 40.55 3.16
789 790 1.545582 ACATTCAAACCAGGCCGAATG 59.454 47.619 20.67 20.67 46.50 2.67
790 791 1.545582 CACATTCAAACCAGGCCGAAT 59.454 47.619 0.00 0.00 0.00 3.34
791 792 0.958091 CACATTCAAACCAGGCCGAA 59.042 50.000 0.00 0.00 0.00 4.30
792 793 0.109532 TCACATTCAAACCAGGCCGA 59.890 50.000 0.00 0.00 0.00 5.54
793 794 0.958091 TTCACATTCAAACCAGGCCG 59.042 50.000 0.00 0.00 0.00 6.13
794 795 1.000843 GGTTCACATTCAAACCAGGCC 59.999 52.381 0.00 0.00 43.63 5.19
795 796 1.000843 GGGTTCACATTCAAACCAGGC 59.999 52.381 6.61 0.00 45.55 4.85
796 797 1.269448 CGGGTTCACATTCAAACCAGG 59.731 52.381 6.61 0.00 45.55 4.45
797 798 1.269448 CCGGGTTCACATTCAAACCAG 59.731 52.381 0.00 2.50 45.55 4.00
798 799 1.133761 TCCGGGTTCACATTCAAACCA 60.134 47.619 0.00 0.00 45.55 3.67
799 800 1.268625 GTCCGGGTTCACATTCAAACC 59.731 52.381 0.00 0.00 43.48 3.27
800 801 1.950909 TGTCCGGGTTCACATTCAAAC 59.049 47.619 0.00 0.00 0.00 2.93
801 802 2.350057 TGTCCGGGTTCACATTCAAA 57.650 45.000 0.00 0.00 0.00 2.69
802 803 2.350057 TTGTCCGGGTTCACATTCAA 57.650 45.000 0.00 0.00 0.00 2.69
803 804 2.226330 CTTTGTCCGGGTTCACATTCA 58.774 47.619 0.00 0.00 0.00 2.57
804 805 2.031157 CACTTTGTCCGGGTTCACATTC 60.031 50.000 0.00 0.00 0.00 2.67
805 806 1.953686 CACTTTGTCCGGGTTCACATT 59.046 47.619 0.00 0.00 0.00 2.71
806 807 1.604604 CACTTTGTCCGGGTTCACAT 58.395 50.000 0.00 0.00 0.00 3.21
807 808 0.464735 CCACTTTGTCCGGGTTCACA 60.465 55.000 0.00 0.00 0.00 3.58
808 809 0.179040 TCCACTTTGTCCGGGTTCAC 60.179 55.000 0.00 0.00 0.00 3.18
809 810 0.179040 GTCCACTTTGTCCGGGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
810 811 0.887836 GGTCCACTTTGTCCGGGTTC 60.888 60.000 0.00 0.00 0.00 3.62
811 812 1.149854 GGTCCACTTTGTCCGGGTT 59.850 57.895 0.00 0.00 0.00 4.11
812 813 2.826003 GGGTCCACTTTGTCCGGGT 61.826 63.158 0.00 0.00 0.00 5.28
813 814 2.033602 GGGTCCACTTTGTCCGGG 59.966 66.667 0.00 0.00 0.00 5.73
814 815 2.033602 GGGGTCCACTTTGTCCGG 59.966 66.667 0.00 0.00 0.00 5.14
815 816 1.003718 GAGGGGTCCACTTTGTCCG 60.004 63.158 0.00 0.00 0.00 4.79
816 817 0.771755 AAGAGGGGTCCACTTTGTCC 59.228 55.000 0.00 0.00 30.61 4.02
817 818 2.505405 GAAAGAGGGGTCCACTTTGTC 58.495 52.381 12.70 0.00 42.66 3.18
818 819 1.145119 GGAAAGAGGGGTCCACTTTGT 59.855 52.381 12.70 0.00 42.66 2.83
819 820 1.144913 TGGAAAGAGGGGTCCACTTTG 59.855 52.381 12.70 0.00 42.66 2.77
820 821 1.529744 TGGAAAGAGGGGTCCACTTT 58.470 50.000 8.67 8.67 44.61 2.66
821 822 1.529744 TTGGAAAGAGGGGTCCACTT 58.470 50.000 0.00 0.00 43.67 3.16
822 823 1.145119 GTTTGGAAAGAGGGGTCCACT 59.855 52.381 0.00 0.00 43.67 4.00
823 824 1.133606 TGTTTGGAAAGAGGGGTCCAC 60.134 52.381 0.00 0.00 43.67 4.02
824 825 1.133606 GTGTTTGGAAAGAGGGGTCCA 60.134 52.381 0.00 0.00 42.27 4.02
825 826 1.617322 GTGTTTGGAAAGAGGGGTCC 58.383 55.000 0.00 0.00 0.00 4.46
826 827 1.235724 CGTGTTTGGAAAGAGGGGTC 58.764 55.000 0.00 0.00 0.00 4.46
827 828 0.822121 GCGTGTTTGGAAAGAGGGGT 60.822 55.000 0.00 0.00 0.00 4.95
828 829 1.524008 GGCGTGTTTGGAAAGAGGGG 61.524 60.000 0.00 0.00 0.00 4.79
829 830 1.524008 GGGCGTGTTTGGAAAGAGGG 61.524 60.000 0.00 0.00 0.00 4.30
830 831 0.821711 TGGGCGTGTTTGGAAAGAGG 60.822 55.000 0.00 0.00 0.00 3.69
831 832 1.028905 TTGGGCGTGTTTGGAAAGAG 58.971 50.000 0.00 0.00 0.00 2.85
832 833 1.407258 CTTTGGGCGTGTTTGGAAAGA 59.593 47.619 0.00 0.00 0.00 2.52
833 834 1.407258 TCTTTGGGCGTGTTTGGAAAG 59.593 47.619 0.00 0.00 0.00 2.62
834 835 1.475403 TCTTTGGGCGTGTTTGGAAA 58.525 45.000 0.00 0.00 0.00 3.13
835 836 1.475403 TTCTTTGGGCGTGTTTGGAA 58.525 45.000 0.00 0.00 0.00 3.53
836 837 1.698506 ATTCTTTGGGCGTGTTTGGA 58.301 45.000 0.00 0.00 0.00 3.53
837 838 2.524569 AATTCTTTGGGCGTGTTTGG 57.475 45.000 0.00 0.00 0.00 3.28
838 839 2.799978 GGAAATTCTTTGGGCGTGTTTG 59.200 45.455 0.00 0.00 0.00 2.93
839 840 2.544903 CGGAAATTCTTTGGGCGTGTTT 60.545 45.455 0.00 0.00 0.00 2.83
840 841 1.000717 CGGAAATTCTTTGGGCGTGTT 60.001 47.619 0.00 0.00 0.00 3.32
841 842 0.596082 CGGAAATTCTTTGGGCGTGT 59.404 50.000 0.00 0.00 0.00 4.49
842 843 0.109319 CCGGAAATTCTTTGGGCGTG 60.109 55.000 0.00 0.00 0.00 5.34
843 844 0.250989 TCCGGAAATTCTTTGGGCGT 60.251 50.000 0.00 0.00 0.00 5.68
844 845 0.451783 CTCCGGAAATTCTTTGGGCG 59.548 55.000 5.23 0.00 0.00 6.13
845 846 0.173481 GCTCCGGAAATTCTTTGGGC 59.827 55.000 5.23 0.00 0.00 5.36
846 847 1.839424 AGCTCCGGAAATTCTTTGGG 58.161 50.000 5.23 0.00 0.00 4.12
847 848 2.683362 GGTAGCTCCGGAAATTCTTTGG 59.317 50.000 5.23 0.00 0.00 3.28
848 849 3.610911 AGGTAGCTCCGGAAATTCTTTG 58.389 45.455 5.23 0.00 41.99 2.77
849 850 5.431179 TTAGGTAGCTCCGGAAATTCTTT 57.569 39.130 5.23 0.00 41.99 2.52
850 851 5.431179 TTTAGGTAGCTCCGGAAATTCTT 57.569 39.130 5.23 0.00 41.99 2.52
851 852 5.431179 TTTTAGGTAGCTCCGGAAATTCT 57.569 39.130 5.23 2.96 41.99 2.40
913 914 3.774702 GTGTTCGCGTTCGCTCCC 61.775 66.667 14.92 3.32 35.26 4.30
914 915 4.117372 CGTGTTCGCGTTCGCTCC 62.117 66.667 14.92 3.65 35.26 4.70
942 943 2.814913 GAAAATGACCTCGCGGGGGT 62.815 60.000 32.03 25.67 40.03 4.95
943 944 2.045340 AAAATGACCTCGCGGGGG 60.045 61.111 32.03 22.52 40.03 5.40
944 945 2.461110 CGAAAATGACCTCGCGGGG 61.461 63.158 27.07 27.07 40.03 5.73
945 946 3.089784 CGAAAATGACCTCGCGGG 58.910 61.111 6.13 0.59 41.89 6.13
949 950 1.135717 TGCAATGCGAAAATGACCTCG 60.136 47.619 0.00 0.00 38.11 4.63
950 951 2.634982 TGCAATGCGAAAATGACCTC 57.365 45.000 0.00 0.00 0.00 3.85
951 952 2.159198 GGATGCAATGCGAAAATGACCT 60.159 45.455 0.00 0.00 0.00 3.85
952 953 2.159198 AGGATGCAATGCGAAAATGACC 60.159 45.455 0.00 0.00 40.91 4.02
953 954 2.855963 CAGGATGCAATGCGAAAATGAC 59.144 45.455 0.00 0.00 40.91 3.06
954 955 3.153676 CAGGATGCAATGCGAAAATGA 57.846 42.857 0.00 0.00 40.91 2.57
1096 1097 1.541379 TCGTCATTCGTCAGAAGGGA 58.459 50.000 0.00 0.00 40.09 4.20
1331 1338 0.689623 CAGAGTCTTGTTGGGGCTCT 59.310 55.000 0.00 0.00 37.04 4.09
1349 1356 0.247537 CATCGTCATCGTCGTCGTCA 60.248 55.000 1.33 0.00 38.33 4.35
1353 1360 0.924363 CCGTCATCGTCATCGTCGTC 60.924 60.000 0.00 0.00 38.33 4.20
1354 1361 1.062047 CCGTCATCGTCATCGTCGT 59.938 57.895 0.00 0.00 38.33 4.34
1361 1368 1.430707 TATCGTCGCCGTCATCGTCA 61.431 55.000 0.00 0.00 35.01 4.35
1362 1369 0.721811 CTATCGTCGCCGTCATCGTC 60.722 60.000 0.00 0.00 35.01 4.20
1363 1370 1.278937 CTATCGTCGCCGTCATCGT 59.721 57.895 0.00 0.00 35.01 3.73
1364 1371 2.075489 GCTATCGTCGCCGTCATCG 61.075 63.158 0.00 0.00 35.01 3.84
1365 1372 2.075489 CGCTATCGTCGCCGTCATC 61.075 63.158 0.00 0.00 35.01 2.92
1366 1373 2.051256 CGCTATCGTCGCCGTCAT 60.051 61.111 0.00 0.00 35.01 3.06
1520 1530 2.103153 TCTCCTTCTCACACTTGGGT 57.897 50.000 0.00 0.00 0.00 4.51
1529 1539 1.719378 ACCCTCCTCTTCTCCTTCTCA 59.281 52.381 0.00 0.00 0.00 3.27
1532 1542 1.199615 CCACCCTCCTCTTCTCCTTC 58.800 60.000 0.00 0.00 0.00 3.46
1671 1687 1.477553 GAAGGGAATGCAATGGCTGA 58.522 50.000 0.00 0.00 41.91 4.26
1913 1929 6.149633 AGATGTAAAATTTTCGACAGGTTGC 58.850 36.000 6.72 0.00 0.00 4.17
1984 2000 4.371624 TGAAGATGAACCCAAGACATGT 57.628 40.909 0.00 0.00 0.00 3.21
2013 2029 2.128771 GTGCCCACCACAGATTACAT 57.871 50.000 0.00 0.00 44.06 2.29
2031 2047 1.921982 TGCTTACCATTGGCACATGT 58.078 45.000 1.54 0.00 39.30 3.21
2397 2433 7.770433 TCCATAGTCCATTCTTTGTAAGATGTG 59.230 37.037 0.00 0.00 37.38 3.21
2559 2618 4.994744 GGTGTTGCCCATTTGCTC 57.005 55.556 0.00 0.00 0.00 4.26
2623 5224 4.883006 TGGTGGTGAAGTACAAAGGTAAAC 59.117 41.667 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.