Multiple sequence alignment - TraesCS3D01G174300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G174300 chr3D 100.000 3086 0 0 1 3086 156143727 156146812 0.000000e+00 5699.0
1 TraesCS3D01G174300 chr3D 92.683 41 3 0 2853 2893 419986937 419986897 3.320000e-05 60.2
2 TraesCS3D01G174300 chr3B 89.139 1289 76 32 1494 2764 225464805 225463563 0.000000e+00 1546.0
3 TraesCS3D01G174300 chr3B 86.831 972 45 31 475 1412 225465725 225464803 0.000000e+00 1009.0
4 TraesCS3D01G174300 chr3B 92.787 305 15 4 1 301 225466110 225465809 4.730000e-118 435.0
5 TraesCS3D01G174300 chr3A 91.164 962 60 16 1494 2443 175633143 175634091 0.000000e+00 1282.0
6 TraesCS3D01G174300 chr3A 89.616 963 34 29 488 1412 175632211 175633145 0.000000e+00 1164.0
7 TraesCS3D01G174300 chr3A 91.810 232 14 4 50 276 175631856 175632087 4.970000e-83 318.0
8 TraesCS3D01G174300 chr3A 82.990 194 8 10 2517 2703 175634289 175634464 5.330000e-33 152.0
9 TraesCS3D01G174300 chr3A 84.375 64 8 2 323 385 157724217 157724155 9.240000e-06 62.1
10 TraesCS3D01G174300 chr6D 99.005 201 2 0 2886 3086 119309480 119309280 8.140000e-96 361.0
11 TraesCS3D01G174300 chr6D 98.529 204 3 0 2883 3086 163114074 163114277 8.140000e-96 361.0
12 TraesCS3D01G174300 chr6D 98.529 204 3 0 2883 3086 445752435 445752638 8.140000e-96 361.0
13 TraesCS3D01G174300 chr1D 98.529 204 3 0 2883 3086 71313693 71313896 8.140000e-96 361.0
14 TraesCS3D01G174300 chr1D 98.529 204 3 0 2883 3086 112452474 112452677 8.140000e-96 361.0
15 TraesCS3D01G174300 chr1D 98.529 204 3 0 2883 3086 269036309 269036512 8.140000e-96 361.0
16 TraesCS3D01G174300 chr1D 99.005 201 2 0 2886 3086 345428415 345428215 8.140000e-96 361.0
17 TraesCS3D01G174300 chr1D 99.005 201 2 0 2886 3086 386928904 386928704 8.140000e-96 361.0
18 TraesCS3D01G174300 chr1D 100.000 32 0 0 2853 2884 396204670 396204639 3.320000e-05 60.2
19 TraesCS3D01G174300 chr5D 93.590 234 10 2 2853 3086 39058179 39057951 8.190000e-91 344.0
20 TraesCS3D01G174300 chr5D 90.566 53 3 2 2832 2884 205099690 205099640 5.520000e-08 69.4
21 TraesCS3D01G174300 chr7B 96.703 91 3 0 1407 1497 696592343 696592253 5.330000e-33 152.0
22 TraesCS3D01G174300 chr7B 95.604 91 4 0 1405 1495 26879168 26879258 2.480000e-31 147.0
23 TraesCS3D01G174300 chr7B 90.476 105 10 0 1391 1495 413101019 413101123 4.150000e-29 139.0
24 TraesCS3D01G174300 chr2A 96.703 91 3 0 1406 1496 693209982 693209892 5.330000e-33 152.0
25 TraesCS3D01G174300 chr2A 95.652 92 4 0 1409 1500 236839341 236839250 6.890000e-32 148.0
26 TraesCS3D01G174300 chr2A 92.000 100 8 0 1396 1495 159582015 159582114 1.150000e-29 141.0
27 TraesCS3D01G174300 chr2A 88.462 52 5 1 2833 2884 746176188 746176238 9.240000e-06 62.1
28 TraesCS3D01G174300 chr7A 94.792 96 4 1 1401 1495 223532888 223532983 6.890000e-32 148.0
29 TraesCS3D01G174300 chr7A 94.681 94 5 0 1410 1503 375402876 375402783 2.480000e-31 147.0
30 TraesCS3D01G174300 chr7A 91.489 47 3 1 2838 2884 380794098 380794143 2.570000e-06 63.9
31 TraesCS3D01G174300 chr1A 94.681 94 5 0 1409 1502 547849174 547849081 2.480000e-31 147.0
32 TraesCS3D01G174300 chr1A 84.375 64 8 2 323 385 7949650 7949712 9.240000e-06 62.1
33 TraesCS3D01G174300 chr1A 92.500 40 3 0 2854 2893 496364494 496364455 1.200000e-04 58.4
34 TraesCS3D01G174300 chr4B 92.063 63 3 2 2776 2836 124922768 124922830 1.520000e-13 87.9
35 TraesCS3D01G174300 chr4B 92.500 40 3 0 2854 2893 61286786 61286747 1.200000e-04 58.4
36 TraesCS3D01G174300 chr2D 95.745 47 0 2 323 369 19246470 19246514 1.190000e-09 75.0
37 TraesCS3D01G174300 chr2D 88.462 52 4 2 2833 2884 424126554 424126505 9.240000e-06 62.1
38 TraesCS3D01G174300 chr5A 93.750 48 1 2 2839 2884 364948049 364948096 1.540000e-08 71.3
39 TraesCS3D01G174300 chr5A 88.462 52 6 0 2832 2883 653425649 653425598 2.570000e-06 63.9
40 TraesCS3D01G174300 chr5A 84.615 65 6 4 323 385 10831121 10831059 9.240000e-06 62.1
41 TraesCS3D01G174300 chr5A 84.615 65 7 3 323 385 572302716 572302779 9.240000e-06 62.1
42 TraesCS3D01G174300 chr2B 91.667 48 2 2 2837 2884 503745889 503745934 7.140000e-07 65.8
43 TraesCS3D01G174300 chr6A 84.375 64 8 2 323 385 603917696 603917758 9.240000e-06 62.1
44 TraesCS3D01G174300 chr6A 100.000 32 0 0 2853 2884 78492374 78492405 3.320000e-05 60.2
45 TraesCS3D01G174300 chr5B 84.375 64 8 2 323 385 133703334 133703396 9.240000e-06 62.1
46 TraesCS3D01G174300 chr5B 92.500 40 3 0 2854 2893 506804378 506804339 1.200000e-04 58.4
47 TraesCS3D01G174300 chr4A 84.375 64 8 2 323 385 361393055 361393117 9.240000e-06 62.1
48 TraesCS3D01G174300 chr4A 84.375 64 8 2 323 385 369763264 369763202 9.240000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G174300 chr3D 156143727 156146812 3085 False 5699.000000 5699 100.000000 1 3086 1 chr3D.!!$F1 3085
1 TraesCS3D01G174300 chr3B 225463563 225466110 2547 True 996.666667 1546 89.585667 1 2764 3 chr3B.!!$R1 2763
2 TraesCS3D01G174300 chr3A 175631856 175634464 2608 False 729.000000 1282 88.895000 50 2703 4 chr3A.!!$F1 2653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 489 0.100861 TCCAAAACGGTTTGAACGGC 59.899 50.0 27.12 0.0 45.99 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 2356 0.035534 ACACAGGCAACACAGACACA 60.036 50.0 0.0 0.0 41.41 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.299773 GAAGGGAGCAGCGAGATCG 60.300 63.158 0.00 0.00 43.27 3.69
119 120 2.603075 ATAAAGCAAGGCCTGAACCA 57.397 45.000 5.69 0.00 0.00 3.67
140 141 1.005394 CAAGCAAGCAAAGGCCTGG 60.005 57.895 5.69 2.38 42.56 4.45
220 222 4.061596 GAGATGATTTGTCCCGATCTTCC 58.938 47.826 0.00 0.00 30.76 3.46
221 223 2.309528 TGATTTGTCCCGATCTTCCG 57.690 50.000 0.00 0.00 0.00 4.30
240 245 5.258456 TCCGGTGCTATTTTACAGACTAG 57.742 43.478 0.00 0.00 0.00 2.57
241 246 4.708421 TCCGGTGCTATTTTACAGACTAGT 59.292 41.667 0.00 0.00 0.00 2.57
242 247 5.887598 TCCGGTGCTATTTTACAGACTAGTA 59.112 40.000 0.00 0.00 0.00 1.82
278 283 4.615682 GCTGATCTGTGGATCTATCTGTCG 60.616 50.000 7.39 0.00 46.18 4.35
279 284 4.464947 TGATCTGTGGATCTATCTGTCGT 58.535 43.478 7.39 0.00 46.18 4.34
280 285 4.889995 TGATCTGTGGATCTATCTGTCGTT 59.110 41.667 7.39 0.00 46.18 3.85
281 286 5.360999 TGATCTGTGGATCTATCTGTCGTTT 59.639 40.000 7.39 0.00 46.18 3.60
282 287 6.546034 TGATCTGTGGATCTATCTGTCGTTTA 59.454 38.462 7.39 0.00 46.18 2.01
301 307 8.116753 GTCGTTTATTACTGAACCATTCATCTG 58.883 37.037 0.00 0.00 39.30 2.90
302 308 6.907212 CGTTTATTACTGAACCATTCATCTGC 59.093 38.462 0.00 0.00 39.30 4.26
306 312 4.833478 ACTGAACCATTCATCTGCTACT 57.167 40.909 0.00 0.00 39.30 2.57
308 314 4.019860 ACTGAACCATTCATCTGCTACTGT 60.020 41.667 0.00 0.00 39.30 3.55
311 317 6.653020 TGAACCATTCATCTGCTACTGTTAT 58.347 36.000 0.00 0.00 34.08 1.89
312 318 6.763135 TGAACCATTCATCTGCTACTGTTATC 59.237 38.462 0.00 0.00 34.08 1.75
314 320 7.603180 ACCATTCATCTGCTACTGTTATCTA 57.397 36.000 0.00 0.00 0.00 1.98
315 321 7.437748 ACCATTCATCTGCTACTGTTATCTAC 58.562 38.462 0.00 0.00 0.00 2.59
316 322 7.288852 ACCATTCATCTGCTACTGTTATCTACT 59.711 37.037 0.00 0.00 0.00 2.57
317 323 7.812191 CCATTCATCTGCTACTGTTATCTACTC 59.188 40.741 0.00 0.00 0.00 2.59
318 324 6.885952 TCATCTGCTACTGTTATCTACTCC 57.114 41.667 0.00 0.00 0.00 3.85
320 326 5.390087 TCTGCTACTGTTATCTACTCCCT 57.610 43.478 0.00 0.00 0.00 4.20
321 327 5.378332 TCTGCTACTGTTATCTACTCCCTC 58.622 45.833 0.00 0.00 0.00 4.30
323 329 4.888239 TGCTACTGTTATCTACTCCCTCAC 59.112 45.833 0.00 0.00 0.00 3.51
324 330 5.134661 GCTACTGTTATCTACTCCCTCACT 58.865 45.833 0.00 0.00 0.00 3.41
325 331 5.595133 GCTACTGTTATCTACTCCCTCACTT 59.405 44.000 0.00 0.00 0.00 3.16
327 333 7.040961 GCTACTGTTATCTACTCCCTCACTTAG 60.041 44.444 0.00 0.00 0.00 2.18
328 334 6.130569 ACTGTTATCTACTCCCTCACTTAGG 58.869 44.000 0.00 0.00 46.09 2.69
329 335 4.894114 TGTTATCTACTCCCTCACTTAGGC 59.106 45.833 0.00 0.00 45.03 3.93
332 338 1.757699 CTACTCCCTCACTTAGGCCAC 59.242 57.143 5.01 0.00 45.03 5.01
334 340 1.207791 CTCCCTCACTTAGGCCACAT 58.792 55.000 5.01 0.00 45.03 3.21
335 341 1.139853 CTCCCTCACTTAGGCCACATC 59.860 57.143 5.01 0.00 45.03 3.06
336 342 1.207791 CCCTCACTTAGGCCACATCT 58.792 55.000 5.01 0.00 45.03 2.90
338 344 2.366916 CCCTCACTTAGGCCACATCTAG 59.633 54.545 5.01 0.00 45.03 2.43
340 346 3.900601 CCTCACTTAGGCCACATCTAGAT 59.099 47.826 5.01 0.00 38.97 1.98
342 348 6.683393 CCTCACTTAGGCCACATCTAGATGT 61.683 48.000 28.95 28.95 45.02 3.06
374 380 9.503427 AGCAAAACTGATAATATAAAAGCGTTC 57.497 29.630 0.00 0.00 0.00 3.95
375 381 9.503427 GCAAAACTGATAATATAAAAGCGTTCT 57.497 29.630 0.00 0.00 0.00 3.01
419 425 3.979948 CACATTTTGTGCAATCAGTCCA 58.020 40.909 0.00 0.00 41.89 4.02
420 426 3.985279 CACATTTTGTGCAATCAGTCCAG 59.015 43.478 0.00 0.00 41.89 3.86
421 427 3.638160 ACATTTTGTGCAATCAGTCCAGT 59.362 39.130 0.00 0.00 0.00 4.00
422 428 4.826733 ACATTTTGTGCAATCAGTCCAGTA 59.173 37.500 0.00 0.00 0.00 2.74
423 429 5.301551 ACATTTTGTGCAATCAGTCCAGTAA 59.698 36.000 0.00 0.00 0.00 2.24
424 430 5.437289 TTTTGTGCAATCAGTCCAGTAAG 57.563 39.130 0.00 0.00 0.00 2.34
425 431 3.057969 TGTGCAATCAGTCCAGTAAGG 57.942 47.619 0.00 0.00 39.47 2.69
426 432 2.637382 TGTGCAATCAGTCCAGTAAGGA 59.363 45.455 0.00 0.00 46.75 3.36
439 445 6.448369 TCCAGTAAGGATGGAGAAGAAAAA 57.552 37.500 0.00 0.00 43.07 1.94
470 476 9.947433 AGCTCATCATTATTTGAAATTCCAAAA 57.053 25.926 0.00 0.00 39.20 2.44
481 487 4.563184 TGAAATTCCAAAACGGTTTGAACG 59.437 37.500 27.12 10.75 45.99 3.95
482 488 2.563471 TTCCAAAACGGTTTGAACGG 57.437 45.000 27.12 10.59 45.99 4.44
483 489 0.100861 TCCAAAACGGTTTGAACGGC 59.899 50.000 27.12 0.00 45.99 5.68
484 490 0.179134 CCAAAACGGTTTGAACGGCA 60.179 50.000 27.12 0.00 45.99 5.69
485 491 1.196200 CAAAACGGTTTGAACGGCAG 58.804 50.000 21.39 0.00 45.99 4.85
486 492 0.526739 AAAACGGTTTGAACGGCAGC 60.527 50.000 6.92 0.00 35.23 5.25
759 786 2.123164 GACCATGCCCATGCCCAT 60.123 61.111 2.75 0.00 37.49 4.00
760 787 2.445085 ACCATGCCCATGCCCATG 60.445 61.111 13.76 13.76 38.78 3.66
761 788 3.936203 CCATGCCCATGCCCATGC 61.936 66.667 14.78 1.70 37.96 4.06
762 789 3.936203 CATGCCCATGCCCATGCC 61.936 66.667 9.83 0.00 37.49 4.40
766 793 4.146156 CCCATGCCCATGCCCAGA 62.146 66.667 2.75 0.00 37.49 3.86
767 794 2.836360 CCATGCCCATGCCCAGAC 60.836 66.667 2.75 0.00 37.49 3.51
768 795 2.836360 CATGCCCATGCCCAGACC 60.836 66.667 0.00 0.00 36.33 3.85
769 796 4.147587 ATGCCCATGCCCAGACCC 62.148 66.667 0.00 0.00 36.33 4.46
779 806 1.704082 CCCAGACCCAGACCCTCTA 59.296 63.158 0.00 0.00 0.00 2.43
780 807 0.688087 CCCAGACCCAGACCCTCTAC 60.688 65.000 0.00 0.00 0.00 2.59
781 811 0.688087 CCAGACCCAGACCCTCTACC 60.688 65.000 0.00 0.00 0.00 3.18
782 812 1.038130 CAGACCCAGACCCTCTACCG 61.038 65.000 0.00 0.00 0.00 4.02
835 865 2.624838 CACTCCACTCAACAAGGCAATT 59.375 45.455 0.00 0.00 0.00 2.32
849 879 0.740737 GCAATTAATCGGCAGCCACT 59.259 50.000 13.30 0.00 0.00 4.00
948 989 0.251832 TTCCCTGTCTCTTCTCGGCT 60.252 55.000 0.00 0.00 0.00 5.52
958 1003 0.459489 CTTCTCGGCTTCTCCTCCAG 59.541 60.000 0.00 0.00 0.00 3.86
1005 1056 2.587194 CCGGAGAGCAAGATGGCG 60.587 66.667 0.00 0.00 39.27 5.69
1086 1137 2.284995 ACCTCAGGTGAGCCCTCC 60.285 66.667 0.00 0.00 43.86 4.30
1110 1161 1.074084 TCCTCCGATTAGGCGATCTCT 59.926 52.381 0.00 0.00 40.77 3.10
1121 1172 0.667993 GCGATCTCTCTAGCACAGCT 59.332 55.000 0.00 0.00 43.41 4.24
1145 1196 2.939103 ACTGTTTGACTGTCTGTTCAGC 59.061 45.455 9.51 0.00 38.84 4.26
1203 1270 2.668550 GTGCCCACTCGTTCCACC 60.669 66.667 0.00 0.00 0.00 4.61
1247 1314 0.895530 TTCTGAAACTCCGGATCGCT 59.104 50.000 3.57 0.00 0.00 4.93
1289 1358 3.556843 CCATGTTTTGGTCATTTGGTCCC 60.557 47.826 0.00 0.00 40.99 4.46
1321 1390 6.294176 GGTCCATGTTATGATTAGTGGAATGC 60.294 42.308 0.00 0.00 37.48 3.56
1330 1399 5.538118 TGATTAGTGGAATGCGGTACATAG 58.462 41.667 0.00 0.00 38.34 2.23
1333 1402 4.317671 AGTGGAATGCGGTACATAGTAC 57.682 45.455 0.00 0.00 38.34 2.73
1334 1403 3.958798 AGTGGAATGCGGTACATAGTACT 59.041 43.478 0.00 0.00 38.34 2.73
1335 1404 4.037684 AGTGGAATGCGGTACATAGTACTC 59.962 45.833 0.00 1.55 38.34 2.59
1336 1405 3.319972 TGGAATGCGGTACATAGTACTCC 59.680 47.826 0.00 6.47 38.34 3.85
1337 1406 3.573110 GGAATGCGGTACATAGTACTCCT 59.427 47.826 0.00 0.00 38.34 3.69
1338 1407 4.038883 GGAATGCGGTACATAGTACTCCTT 59.961 45.833 0.00 0.00 38.34 3.36
1339 1408 5.242393 GGAATGCGGTACATAGTACTCCTTA 59.758 44.000 0.00 0.00 38.34 2.69
1342 1411 6.323203 TGCGGTACATAGTACTCCTTAATC 57.677 41.667 0.00 0.00 0.00 1.75
1360 1429 8.572185 TCCTTAATCATCTCGTCTAATTCAGAG 58.428 37.037 0.00 0.00 32.51 3.35
1412 1482 5.376625 TGTTGTTTCTTGCCAAGATCTACT 58.623 37.500 8.18 0.00 37.38 2.57
1413 1483 5.470098 TGTTGTTTCTTGCCAAGATCTACTC 59.530 40.000 8.18 6.04 37.38 2.59
1414 1484 4.245660 TGTTTCTTGCCAAGATCTACTCG 58.754 43.478 8.18 0.00 37.38 4.18
1415 1485 2.586258 TCTTGCCAAGATCTACTCGC 57.414 50.000 2.24 0.00 31.20 5.03
1416 1486 2.103373 TCTTGCCAAGATCTACTCGCT 58.897 47.619 2.24 0.00 31.20 4.93
1417 1487 2.099921 TCTTGCCAAGATCTACTCGCTC 59.900 50.000 2.24 0.00 31.20 5.03
1418 1488 0.747255 TGCCAAGATCTACTCGCTCC 59.253 55.000 0.00 0.00 0.00 4.70
1419 1489 0.318275 GCCAAGATCTACTCGCTCCG 60.318 60.000 0.00 0.00 0.00 4.63
1420 1490 1.025812 CCAAGATCTACTCGCTCCGT 58.974 55.000 0.00 0.00 0.00 4.69
1421 1491 1.405821 CCAAGATCTACTCGCTCCGTT 59.594 52.381 0.00 0.00 0.00 4.44
1422 1492 2.159226 CCAAGATCTACTCGCTCCGTTT 60.159 50.000 0.00 0.00 0.00 3.60
1423 1493 3.109619 CAAGATCTACTCGCTCCGTTTC 58.890 50.000 0.00 0.00 0.00 2.78
1424 1494 2.366533 AGATCTACTCGCTCCGTTTCA 58.633 47.619 0.00 0.00 0.00 2.69
1425 1495 2.753452 AGATCTACTCGCTCCGTTTCAA 59.247 45.455 0.00 0.00 0.00 2.69
1426 1496 3.192844 AGATCTACTCGCTCCGTTTCAAA 59.807 43.478 0.00 0.00 0.00 2.69
1427 1497 3.374220 TCTACTCGCTCCGTTTCAAAA 57.626 42.857 0.00 0.00 0.00 2.44
1428 1498 3.921677 TCTACTCGCTCCGTTTCAAAAT 58.078 40.909 0.00 0.00 0.00 1.82
1429 1499 5.063180 TCTACTCGCTCCGTTTCAAAATA 57.937 39.130 0.00 0.00 0.00 1.40
1430 1500 5.100259 TCTACTCGCTCCGTTTCAAAATAG 58.900 41.667 0.00 0.00 0.00 1.73
1431 1501 3.921677 ACTCGCTCCGTTTCAAAATAGA 58.078 40.909 0.00 0.00 0.00 1.98
1432 1502 4.504858 ACTCGCTCCGTTTCAAAATAGAT 58.495 39.130 0.00 0.00 0.00 1.98
1433 1503 4.330074 ACTCGCTCCGTTTCAAAATAGATG 59.670 41.667 0.00 0.00 0.00 2.90
1434 1504 4.500127 TCGCTCCGTTTCAAAATAGATGA 58.500 39.130 0.00 0.00 0.00 2.92
1435 1505 4.328983 TCGCTCCGTTTCAAAATAGATGAC 59.671 41.667 0.00 0.00 0.00 3.06
1436 1506 4.494199 CGCTCCGTTTCAAAATAGATGACC 60.494 45.833 0.00 0.00 0.00 4.02
1437 1507 4.201920 GCTCCGTTTCAAAATAGATGACCC 60.202 45.833 0.00 0.00 0.00 4.46
1438 1508 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
1439 1509 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
1440 1510 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
1441 1511 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
1442 1512 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
1443 1513 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
1444 1514 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
1445 1515 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
1446 1516 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
1447 1517 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
1448 1518 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
1449 1519 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
1450 1520 9.975218 AAAATAGATGACCCAACTTTGTACTAT 57.025 29.630 0.00 0.00 0.00 2.12
1453 1523 7.735326 AGATGACCCAACTTTGTACTATAGT 57.265 36.000 10.87 10.87 0.00 2.12
1454 1524 8.147244 AGATGACCCAACTTTGTACTATAGTT 57.853 34.615 11.40 0.00 32.60 2.24
1455 1525 9.263446 AGATGACCCAACTTTGTACTATAGTTA 57.737 33.333 11.40 0.00 31.30 2.24
1456 1526 9.530633 GATGACCCAACTTTGTACTATAGTTAG 57.469 37.037 11.40 6.58 31.30 2.34
1457 1527 8.426569 TGACCCAACTTTGTACTATAGTTAGT 57.573 34.615 11.40 7.18 41.57 2.24
1458 1528 9.532494 TGACCCAACTTTGTACTATAGTTAGTA 57.468 33.333 11.40 0.00 39.42 1.82
1485 1555 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
1486 1556 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
1487 1557 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
1488 1558 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
1489 1559 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1490 1560 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1491 1561 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1492 1562 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1493 1563 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1494 1564 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
1495 1565 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
1521 1591 4.737598 CGTGTTCTTGATTTAGATACGCG 58.262 43.478 3.53 3.53 35.31 6.01
1534 1604 2.159627 AGATACGCGCTTGTTCCAAAAG 59.840 45.455 5.73 0.00 0.00 2.27
1579 1649 4.856487 CGAAGCAACTCACAAAACTTTTCA 59.144 37.500 0.00 0.00 0.00 2.69
1602 1672 8.055279 TCAAAGAAACTGACATTTCTCTGTTT 57.945 30.769 11.05 4.46 46.02 2.83
1610 1680 6.698766 ACTGACATTTCTCTGTTTTTGATTGC 59.301 34.615 0.00 0.00 0.00 3.56
1649 1719 3.702048 GCCGAGGCACAGGTACCA 61.702 66.667 15.94 0.00 41.49 3.25
1980 2059 0.113776 AAGTCCGACCCCAGTGAGTA 59.886 55.000 0.00 0.00 0.00 2.59
1991 2070 0.390866 CAGTGAGTAGCCAGCCACTG 60.391 60.000 10.84 10.84 46.71 3.66
2067 2146 0.385098 GTCGTTTTGCAGGTTACGGC 60.385 55.000 10.58 6.51 38.35 5.68
2219 2307 6.183360 GCATGATGATTAATTGGTTGAGGTGA 60.183 38.462 0.00 0.00 0.00 4.02
2228 2316 1.230324 GGTTGAGGTGAAGAGTGTGC 58.770 55.000 0.00 0.00 0.00 4.57
2260 2349 4.820173 GGGTTAACTGCTAGTGTCTGTTTT 59.180 41.667 5.42 0.00 0.00 2.43
2261 2350 5.298527 GGGTTAACTGCTAGTGTCTGTTTTT 59.701 40.000 5.42 0.00 0.00 1.94
2280 2369 3.969117 TTTGAGATGTGTCTGTGTTGC 57.031 42.857 0.00 0.00 33.97 4.17
2281 2370 1.882912 TGAGATGTGTCTGTGTTGCC 58.117 50.000 0.00 0.00 33.97 4.52
2282 2371 1.417517 TGAGATGTGTCTGTGTTGCCT 59.582 47.619 0.00 0.00 33.97 4.75
2283 2372 1.802960 GAGATGTGTCTGTGTTGCCTG 59.197 52.381 0.00 0.00 33.97 4.85
2284 2373 1.141657 AGATGTGTCTGTGTTGCCTGT 59.858 47.619 0.00 0.00 32.13 4.00
2285 2374 1.265095 GATGTGTCTGTGTTGCCTGTG 59.735 52.381 0.00 0.00 0.00 3.66
2286 2375 0.035534 TGTGTCTGTGTTGCCTGTGT 60.036 50.000 0.00 0.00 0.00 3.72
2287 2376 0.657840 GTGTCTGTGTTGCCTGTGTC 59.342 55.000 0.00 0.00 0.00 3.67
2293 2382 2.164219 CTGTGTTGCCTGTGTCTTGTTT 59.836 45.455 0.00 0.00 0.00 2.83
2326 2429 1.069296 CACTGATCGATCTCTCTCCGC 60.069 57.143 25.02 0.00 0.00 5.54
2396 2510 5.871524 CCTATATATGACTGCATGTGTGTCC 59.128 44.000 10.65 0.00 35.94 4.02
2405 2519 0.035881 CATGTGTGTCCTGCTCCAGT 59.964 55.000 0.00 0.00 0.00 4.00
2461 2687 1.306825 AGAGGCCAGACCAGAGCAT 60.307 57.895 5.01 0.00 43.14 3.79
2462 2688 0.913451 AGAGGCCAGACCAGAGCATT 60.913 55.000 5.01 0.00 43.14 3.56
2463 2689 0.034670 GAGGCCAGACCAGAGCATTT 60.035 55.000 5.01 0.00 43.14 2.32
2464 2690 0.034670 AGGCCAGACCAGAGCATTTC 60.035 55.000 5.01 0.00 43.14 2.17
2465 2691 0.034670 GGCCAGACCAGAGCATTTCT 60.035 55.000 0.00 0.00 38.86 2.52
2469 2695 3.366781 GCCAGACCAGAGCATTTCTTTTC 60.367 47.826 0.00 0.00 32.41 2.29
2479 2705 8.333186 CCAGAGCATTTCTTTTCTTTTCTTTTG 58.667 33.333 0.00 0.00 32.41 2.44
2482 2708 5.903530 GCATTTCTTTTCTTTTCTTTTGCGG 59.096 36.000 0.00 0.00 0.00 5.69
2484 2710 4.993029 TCTTTTCTTTTCTTTTGCGGGA 57.007 36.364 0.00 0.00 0.00 5.14
2487 2713 5.579119 TCTTTTCTTTTCTTTTGCGGGAAAC 59.421 36.000 0.00 0.00 32.20 2.78
2497 2723 2.639286 CGGGAAACTGTGTGCAGC 59.361 61.111 0.00 0.00 46.30 5.25
2498 2724 2.908073 CGGGAAACTGTGTGCAGCC 61.908 63.158 0.00 0.00 46.30 4.85
2500 2726 1.656441 GGAAACTGTGTGCAGCCTG 59.344 57.895 0.00 0.00 46.30 4.85
2501 2727 0.819259 GGAAACTGTGTGCAGCCTGA 60.819 55.000 0.00 0.00 46.30 3.86
2502 2728 0.590195 GAAACTGTGTGCAGCCTGAG 59.410 55.000 0.00 0.00 46.30 3.35
2506 2732 2.179427 ACTGTGTGCAGCCTGAGTATA 58.821 47.619 0.00 0.00 46.30 1.47
2507 2733 2.567169 ACTGTGTGCAGCCTGAGTATAA 59.433 45.455 0.00 0.00 46.30 0.98
2508 2734 3.007940 ACTGTGTGCAGCCTGAGTATAAA 59.992 43.478 0.00 0.00 46.30 1.40
2543 2786 3.476419 CGTATGGCGGGGAAGGGT 61.476 66.667 0.00 0.00 36.85 4.34
2595 2844 1.628340 TGTTCCACTTCCATCGGATGT 59.372 47.619 16.29 0.00 40.09 3.06
2604 2853 4.162320 ACTTCCATCGGATGTGAATACTGT 59.838 41.667 16.29 10.16 38.42 3.55
2615 2864 7.094975 CGGATGTGAATACTGTAAAAGGAAACA 60.095 37.037 0.00 0.00 0.00 2.83
2629 2878 9.138062 GTAAAAGGAAACAAAACGAAAAGGTTA 57.862 29.630 0.00 0.00 0.00 2.85
2688 2937 9.961265 AGAAGTCTCGTCTCTATATCTATATCG 57.039 37.037 0.00 0.00 0.00 2.92
2806 3062 9.844790 TGTCTATTTACTTTGCATCAAGATTTG 57.155 29.630 5.15 0.00 0.00 2.32
2807 3063 9.846248 GTCTATTTACTTTGCATCAAGATTTGT 57.154 29.630 5.15 0.00 0.00 2.83
2809 3065 9.294030 CTATTTACTTTGCATCAAGATTTGTCC 57.706 33.333 5.15 0.00 0.00 4.02
2810 3066 4.525912 ACTTTGCATCAAGATTTGTCCC 57.474 40.909 5.15 0.00 0.00 4.46
2811 3067 3.896888 ACTTTGCATCAAGATTTGTCCCA 59.103 39.130 5.15 0.00 0.00 4.37
2812 3068 4.529377 ACTTTGCATCAAGATTTGTCCCAT 59.471 37.500 5.15 0.00 0.00 4.00
2813 3069 5.716228 ACTTTGCATCAAGATTTGTCCCATA 59.284 36.000 5.15 0.00 0.00 2.74
2814 3070 6.381994 ACTTTGCATCAAGATTTGTCCCATAT 59.618 34.615 5.15 0.00 0.00 1.78
2815 3071 5.777850 TGCATCAAGATTTGTCCCATATG 57.222 39.130 0.00 0.00 0.00 1.78
2816 3072 5.447757 TGCATCAAGATTTGTCCCATATGA 58.552 37.500 3.65 0.00 0.00 2.15
2817 3073 6.072649 TGCATCAAGATTTGTCCCATATGAT 58.927 36.000 3.65 0.00 0.00 2.45
2818 3074 6.208007 TGCATCAAGATTTGTCCCATATGATC 59.792 38.462 3.65 0.00 0.00 2.92
2819 3075 6.208007 GCATCAAGATTTGTCCCATATGATCA 59.792 38.462 3.65 0.00 0.00 2.92
2820 3076 7.093902 GCATCAAGATTTGTCCCATATGATCAT 60.094 37.037 13.81 13.81 0.00 2.45
2821 3077 8.803235 CATCAAGATTTGTCCCATATGATCATT 58.197 33.333 14.65 0.00 0.00 2.57
2822 3078 8.771521 TCAAGATTTGTCCCATATGATCATTT 57.228 30.769 14.65 2.68 0.00 2.32
2823 3079 9.204337 TCAAGATTTGTCCCATATGATCATTTT 57.796 29.630 14.65 0.00 0.00 1.82
2829 3085 8.765488 TTGTCCCATATGATCATTTTATGTGT 57.235 30.769 14.65 0.00 0.00 3.72
2830 3086 8.765488 TGTCCCATATGATCATTTTATGTGTT 57.235 30.769 14.65 0.00 0.00 3.32
2831 3087 9.859152 TGTCCCATATGATCATTTTATGTGTTA 57.141 29.630 14.65 0.00 0.00 2.41
2848 3104 7.881775 ATGTGTTAGAAAGATATTTGGTCCC 57.118 36.000 0.00 0.00 0.00 4.46
2849 3105 6.184789 TGTGTTAGAAAGATATTTGGTCCCC 58.815 40.000 0.00 0.00 0.00 4.81
2850 3106 6.011981 TGTGTTAGAAAGATATTTGGTCCCCT 60.012 38.462 0.00 0.00 0.00 4.79
2851 3107 6.890268 GTGTTAGAAAGATATTTGGTCCCCTT 59.110 38.462 0.00 0.00 0.00 3.95
2852 3108 6.889722 TGTTAGAAAGATATTTGGTCCCCTTG 59.110 38.462 0.00 0.00 0.00 3.61
2853 3109 5.536497 AGAAAGATATTTGGTCCCCTTGT 57.464 39.130 0.00 0.00 0.00 3.16
2854 3110 5.264395 AGAAAGATATTTGGTCCCCTTGTG 58.736 41.667 0.00 0.00 0.00 3.33
2855 3111 4.946160 AAGATATTTGGTCCCCTTGTGA 57.054 40.909 0.00 0.00 0.00 3.58
2856 3112 4.946160 AGATATTTGGTCCCCTTGTGAA 57.054 40.909 0.00 0.00 0.00 3.18
2857 3113 5.269554 AGATATTTGGTCCCCTTGTGAAA 57.730 39.130 0.00 0.00 0.00 2.69
2858 3114 5.264395 AGATATTTGGTCCCCTTGTGAAAG 58.736 41.667 0.00 0.00 0.00 2.62
2859 3115 3.611025 ATTTGGTCCCCTTGTGAAAGA 57.389 42.857 0.00 0.00 0.00 2.52
2860 3116 3.611025 TTTGGTCCCCTTGTGAAAGAT 57.389 42.857 0.00 0.00 0.00 2.40
2861 3117 2.879103 TGGTCCCCTTGTGAAAGATC 57.121 50.000 0.00 0.00 0.00 2.75
2862 3118 1.003118 TGGTCCCCTTGTGAAAGATCG 59.997 52.381 0.00 0.00 0.00 3.69
2863 3119 1.003233 GGTCCCCTTGTGAAAGATCGT 59.997 52.381 0.00 0.00 0.00 3.73
2864 3120 2.076863 GTCCCCTTGTGAAAGATCGTG 58.923 52.381 0.00 0.00 0.00 4.35
2865 3121 1.003118 TCCCCTTGTGAAAGATCGTGG 59.997 52.381 0.00 0.00 0.00 4.94
2866 3122 1.003118 CCCCTTGTGAAAGATCGTGGA 59.997 52.381 0.00 0.00 0.00 4.02
2867 3123 2.356125 CCCCTTGTGAAAGATCGTGGAT 60.356 50.000 0.00 0.00 0.00 3.41
2868 3124 2.679837 CCCTTGTGAAAGATCGTGGATG 59.320 50.000 0.00 0.00 0.00 3.51
2869 3125 3.338249 CCTTGTGAAAGATCGTGGATGT 58.662 45.455 0.00 0.00 0.00 3.06
2870 3126 3.372206 CCTTGTGAAAGATCGTGGATGTC 59.628 47.826 0.00 0.00 0.00 3.06
2871 3127 2.606108 TGTGAAAGATCGTGGATGTCG 58.394 47.619 0.00 0.00 0.00 4.35
2872 3128 1.324736 GTGAAAGATCGTGGATGTCGC 59.675 52.381 0.00 0.00 0.00 5.19
2873 3129 0.931005 GAAAGATCGTGGATGTCGCC 59.069 55.000 0.00 0.00 0.00 5.54
2874 3130 0.537188 AAAGATCGTGGATGTCGCCT 59.463 50.000 0.00 0.00 0.00 5.52
2875 3131 1.399714 AAGATCGTGGATGTCGCCTA 58.600 50.000 0.00 0.00 0.00 3.93
2876 3132 0.955178 AGATCGTGGATGTCGCCTAG 59.045 55.000 0.00 0.00 0.00 3.02
2877 3133 0.952280 GATCGTGGATGTCGCCTAGA 59.048 55.000 0.00 0.00 0.00 2.43
2878 3134 0.955178 ATCGTGGATGTCGCCTAGAG 59.045 55.000 0.00 0.00 0.00 2.43
2879 3135 1.101635 TCGTGGATGTCGCCTAGAGG 61.102 60.000 0.00 0.00 38.53 3.69
2880 3136 1.742768 GTGGATGTCGCCTAGAGGG 59.257 63.158 0.00 0.00 35.18 4.30
2882 3138 2.210711 GGATGTCGCCTAGAGGGGG 61.211 68.421 12.32 0.23 46.90 5.40
2899 3155 3.801114 GGGGGATAATTTGTCAAGCAC 57.199 47.619 0.00 0.00 0.00 4.40
2900 3156 3.096092 GGGGGATAATTTGTCAAGCACA 58.904 45.455 0.00 0.00 0.00 4.57
2901 3157 3.513515 GGGGGATAATTTGTCAAGCACAA 59.486 43.478 0.00 0.00 43.68 3.33
2911 3167 4.364415 TGTCAAGCACAAAACCTACAAC 57.636 40.909 0.00 0.00 29.30 3.32
2912 3168 3.759086 TGTCAAGCACAAAACCTACAACA 59.241 39.130 0.00 0.00 29.30 3.33
2913 3169 4.218635 TGTCAAGCACAAAACCTACAACAA 59.781 37.500 0.00 0.00 29.30 2.83
2914 3170 4.561213 GTCAAGCACAAAACCTACAACAAC 59.439 41.667 0.00 0.00 0.00 3.32
2915 3171 4.461081 TCAAGCACAAAACCTACAACAACT 59.539 37.500 0.00 0.00 0.00 3.16
2916 3172 5.648526 TCAAGCACAAAACCTACAACAACTA 59.351 36.000 0.00 0.00 0.00 2.24
2917 3173 5.751243 AGCACAAAACCTACAACAACTAG 57.249 39.130 0.00 0.00 0.00 2.57
2918 3174 4.578928 AGCACAAAACCTACAACAACTAGG 59.421 41.667 0.00 0.00 37.40 3.02
2919 3175 4.791734 GCACAAAACCTACAACAACTAGGC 60.792 45.833 0.00 0.00 35.04 3.93
2920 3176 4.578928 CACAAAACCTACAACAACTAGGCT 59.421 41.667 0.00 0.00 35.04 4.58
2921 3177 4.820173 ACAAAACCTACAACAACTAGGCTC 59.180 41.667 0.00 0.00 35.04 4.70
2922 3178 4.699925 AAACCTACAACAACTAGGCTCA 57.300 40.909 0.00 0.00 35.04 4.26
2923 3179 3.679824 ACCTACAACAACTAGGCTCAC 57.320 47.619 0.00 0.00 35.04 3.51
2924 3180 2.302157 ACCTACAACAACTAGGCTCACC 59.698 50.000 0.00 0.00 35.04 4.02
2934 3190 4.225497 GGCTCACCTATGTGCACC 57.775 61.111 15.69 0.00 45.29 5.01
2935 3191 1.299648 GGCTCACCTATGTGCACCA 59.700 57.895 15.69 2.61 45.29 4.17
2936 3192 0.322456 GGCTCACCTATGTGCACCAA 60.322 55.000 15.69 0.65 45.29 3.67
2937 3193 0.804989 GCTCACCTATGTGCACCAAC 59.195 55.000 15.69 0.00 43.41 3.77
2938 3194 1.881925 GCTCACCTATGTGCACCAACA 60.882 52.381 15.69 0.00 43.41 3.33
2939 3195 2.503331 CTCACCTATGTGCACCAACAA 58.497 47.619 15.69 0.00 42.46 2.83
2940 3196 2.226330 TCACCTATGTGCACCAACAAC 58.774 47.619 15.69 0.00 42.46 3.32
2941 3197 2.158682 TCACCTATGTGCACCAACAACT 60.159 45.455 15.69 0.00 42.46 3.16
2942 3198 2.622942 CACCTATGTGCACCAACAACTT 59.377 45.455 15.69 0.00 35.31 2.66
2943 3199 3.818210 CACCTATGTGCACCAACAACTTA 59.182 43.478 15.69 0.00 35.31 2.24
2944 3200 4.458989 CACCTATGTGCACCAACAACTTAT 59.541 41.667 15.69 0.00 35.31 1.73
2945 3201 4.458989 ACCTATGTGCACCAACAACTTATG 59.541 41.667 15.69 0.00 32.81 1.90
2946 3202 2.791383 TGTGCACCAACAACTTATGC 57.209 45.000 15.69 0.00 36.81 3.14
2947 3203 2.305928 TGTGCACCAACAACTTATGCT 58.694 42.857 15.69 0.00 37.20 3.79
2948 3204 3.481453 TGTGCACCAACAACTTATGCTA 58.519 40.909 15.69 0.00 37.20 3.49
2949 3205 3.885901 TGTGCACCAACAACTTATGCTAA 59.114 39.130 15.69 0.00 37.20 3.09
2950 3206 4.023279 TGTGCACCAACAACTTATGCTAAG 60.023 41.667 15.69 2.55 37.20 2.18
2951 3207 3.057596 TGCACCAACAACTTATGCTAAGC 60.058 43.478 0.00 0.00 37.20 3.09
2952 3208 3.057596 GCACCAACAACTTATGCTAAGCA 60.058 43.478 0.00 0.00 44.86 3.91
2953 3209 4.558496 GCACCAACAACTTATGCTAAGCAA 60.558 41.667 0.00 0.00 43.62 3.91
2954 3210 5.156355 CACCAACAACTTATGCTAAGCAAG 58.844 41.667 0.00 0.00 43.62 4.01
2955 3211 5.048782 CACCAACAACTTATGCTAAGCAAGA 60.049 40.000 0.00 0.00 43.62 3.02
2956 3212 5.534654 ACCAACAACTTATGCTAAGCAAGAA 59.465 36.000 0.00 0.00 43.62 2.52
2957 3213 6.040391 ACCAACAACTTATGCTAAGCAAGAAA 59.960 34.615 0.00 0.00 43.62 2.52
2958 3214 6.922957 CCAACAACTTATGCTAAGCAAGAAAA 59.077 34.615 0.00 0.00 43.62 2.29
2959 3215 7.437862 CCAACAACTTATGCTAAGCAAGAAAAA 59.562 33.333 0.00 0.00 43.62 1.94
2960 3216 7.930513 ACAACTTATGCTAAGCAAGAAAAAC 57.069 32.000 0.00 0.00 43.62 2.43
2961 3217 7.716612 ACAACTTATGCTAAGCAAGAAAAACT 58.283 30.769 0.00 0.00 43.62 2.66
2962 3218 8.846211 ACAACTTATGCTAAGCAAGAAAAACTA 58.154 29.630 0.00 0.00 43.62 2.24
2963 3219 9.118236 CAACTTATGCTAAGCAAGAAAAACTAC 57.882 33.333 0.00 0.00 43.62 2.73
2964 3220 8.622948 ACTTATGCTAAGCAAGAAAAACTACT 57.377 30.769 0.00 0.00 43.62 2.57
2965 3221 9.067986 ACTTATGCTAAGCAAGAAAAACTACTT 57.932 29.630 0.00 0.00 43.62 2.24
2968 3224 7.435068 TGCTAAGCAAGAAAAACTACTTAGG 57.565 36.000 1.90 0.00 41.15 2.69
2969 3225 6.996282 TGCTAAGCAAGAAAAACTACTTAGGT 59.004 34.615 1.90 0.00 41.15 3.08
2970 3226 7.041372 TGCTAAGCAAGAAAAACTACTTAGGTG 60.041 37.037 1.90 0.00 41.15 4.00
2971 3227 6.635030 AAGCAAGAAAAACTACTTAGGTGG 57.365 37.500 0.00 0.00 0.00 4.61
2972 3228 5.691896 AGCAAGAAAAACTACTTAGGTGGT 58.308 37.500 0.00 0.00 38.81 4.16
2973 3229 6.834107 AGCAAGAAAAACTACTTAGGTGGTA 58.166 36.000 0.00 0.00 36.13 3.25
2974 3230 6.935208 AGCAAGAAAAACTACTTAGGTGGTAG 59.065 38.462 0.00 0.00 41.49 3.18
2975 3231 6.348295 GCAAGAAAAACTACTTAGGTGGTAGC 60.348 42.308 0.00 0.00 39.95 3.58
2976 3232 6.429521 AGAAAAACTACTTAGGTGGTAGCA 57.570 37.500 0.00 0.00 39.95 3.49
2977 3233 6.834107 AGAAAAACTACTTAGGTGGTAGCAA 58.166 36.000 0.00 0.00 39.95 3.91
2978 3234 6.935208 AGAAAAACTACTTAGGTGGTAGCAAG 59.065 38.462 0.00 0.00 39.95 4.01
2979 3235 6.429521 AAAACTACTTAGGTGGTAGCAAGA 57.570 37.500 0.00 0.00 39.95 3.02
2980 3236 6.622427 AAACTACTTAGGTGGTAGCAAGAT 57.378 37.500 0.00 0.00 39.95 2.40
2981 3237 7.729124 AAACTACTTAGGTGGTAGCAAGATA 57.271 36.000 0.00 0.00 39.95 1.98
2982 3238 7.916077 AACTACTTAGGTGGTAGCAAGATAT 57.084 36.000 0.00 0.00 39.95 1.63
2983 3239 9.430399 AAACTACTTAGGTGGTAGCAAGATATA 57.570 33.333 0.00 0.00 39.95 0.86
2984 3240 9.603189 AACTACTTAGGTGGTAGCAAGATATAT 57.397 33.333 0.00 0.00 39.95 0.86
2985 3241 9.026121 ACTACTTAGGTGGTAGCAAGATATATG 57.974 37.037 0.00 0.00 39.95 1.78
2986 3242 9.244292 CTACTTAGGTGGTAGCAAGATATATGA 57.756 37.037 0.00 0.00 31.79 2.15
2987 3243 7.897864 ACTTAGGTGGTAGCAAGATATATGAC 58.102 38.462 0.00 0.00 0.00 3.06
2988 3244 7.509318 ACTTAGGTGGTAGCAAGATATATGACA 59.491 37.037 0.00 0.00 0.00 3.58
2989 3245 6.747414 AGGTGGTAGCAAGATATATGACAA 57.253 37.500 0.00 0.00 0.00 3.18
2990 3246 6.763355 AGGTGGTAGCAAGATATATGACAAG 58.237 40.000 0.00 0.00 0.00 3.16
2991 3247 6.554982 AGGTGGTAGCAAGATATATGACAAGA 59.445 38.462 0.00 0.00 0.00 3.02
2992 3248 7.071196 AGGTGGTAGCAAGATATATGACAAGAA 59.929 37.037 0.00 0.00 0.00 2.52
2993 3249 7.715249 GGTGGTAGCAAGATATATGACAAGAAA 59.285 37.037 0.00 0.00 0.00 2.52
2994 3250 8.552034 GTGGTAGCAAGATATATGACAAGAAAC 58.448 37.037 0.00 0.00 0.00 2.78
2995 3251 8.264347 TGGTAGCAAGATATATGACAAGAAACA 58.736 33.333 0.00 0.00 0.00 2.83
2996 3252 9.109393 GGTAGCAAGATATATGACAAGAAACAA 57.891 33.333 0.00 0.00 0.00 2.83
3007 3263 7.701539 ATGACAAGAAACAATATGGCTAACA 57.298 32.000 0.00 0.00 0.00 2.41
3008 3264 6.908825 TGACAAGAAACAATATGGCTAACAC 58.091 36.000 0.00 0.00 0.00 3.32
3009 3265 6.488344 TGACAAGAAACAATATGGCTAACACA 59.512 34.615 0.00 0.00 0.00 3.72
3010 3266 7.013750 TGACAAGAAACAATATGGCTAACACAA 59.986 33.333 0.00 0.00 0.00 3.33
3011 3267 7.721402 ACAAGAAACAATATGGCTAACACAAA 58.279 30.769 0.00 0.00 0.00 2.83
3012 3268 7.867403 ACAAGAAACAATATGGCTAACACAAAG 59.133 33.333 0.00 0.00 0.00 2.77
3013 3269 7.524717 AGAAACAATATGGCTAACACAAAGT 57.475 32.000 0.00 0.00 0.00 2.66
3014 3270 8.630054 AGAAACAATATGGCTAACACAAAGTA 57.370 30.769 0.00 0.00 0.00 2.24
3015 3271 9.073475 AGAAACAATATGGCTAACACAAAGTAA 57.927 29.630 0.00 0.00 0.00 2.24
3016 3272 9.685828 GAAACAATATGGCTAACACAAAGTAAA 57.314 29.630 0.00 0.00 0.00 2.01
3017 3273 9.691362 AAACAATATGGCTAACACAAAGTAAAG 57.309 29.630 0.00 0.00 0.00 1.85
3018 3274 8.404107 ACAATATGGCTAACACAAAGTAAAGT 57.596 30.769 0.00 0.00 0.00 2.66
3019 3275 8.296713 ACAATATGGCTAACACAAAGTAAAGTG 58.703 33.333 0.00 0.00 41.40 3.16
3020 3276 4.561735 TGGCTAACACAAAGTAAAGTGC 57.438 40.909 0.00 0.00 39.30 4.40
3021 3277 3.948473 TGGCTAACACAAAGTAAAGTGCA 59.052 39.130 0.00 0.00 39.30 4.57
3022 3278 4.582656 TGGCTAACACAAAGTAAAGTGCAT 59.417 37.500 0.00 0.00 39.30 3.96
3023 3279 5.765677 TGGCTAACACAAAGTAAAGTGCATA 59.234 36.000 0.00 0.00 39.30 3.14
3024 3280 6.263392 TGGCTAACACAAAGTAAAGTGCATAA 59.737 34.615 0.00 0.00 39.30 1.90
3025 3281 6.801862 GGCTAACACAAAGTAAAGTGCATAAG 59.198 38.462 0.00 0.00 39.30 1.73
3026 3282 7.360361 GCTAACACAAAGTAAAGTGCATAAGT 58.640 34.615 0.00 0.00 39.30 2.24
3027 3283 8.500773 GCTAACACAAAGTAAAGTGCATAAGTA 58.499 33.333 0.00 0.00 39.30 2.24
3030 3286 9.730420 AACACAAAGTAAAGTGCATAAGTAAAG 57.270 29.630 0.00 0.00 39.30 1.85
3031 3287 8.349983 ACACAAAGTAAAGTGCATAAGTAAAGG 58.650 33.333 0.00 0.00 39.30 3.11
3032 3288 7.807907 CACAAAGTAAAGTGCATAAGTAAAGGG 59.192 37.037 0.00 0.00 0.00 3.95
3033 3289 6.510879 AAGTAAAGTGCATAAGTAAAGGGC 57.489 37.500 0.00 0.00 0.00 5.19
3034 3290 5.816682 AGTAAAGTGCATAAGTAAAGGGCT 58.183 37.500 0.00 0.00 0.00 5.19
3035 3291 5.880887 AGTAAAGTGCATAAGTAAAGGGCTC 59.119 40.000 0.00 0.00 0.00 4.70
3036 3292 2.906354 AGTGCATAAGTAAAGGGCTCG 58.094 47.619 0.00 0.00 0.00 5.03
3037 3293 1.940613 GTGCATAAGTAAAGGGCTCGG 59.059 52.381 0.00 0.00 0.00 4.63
3038 3294 1.134220 TGCATAAGTAAAGGGCTCGGG 60.134 52.381 0.00 0.00 0.00 5.14
3039 3295 1.134189 GCATAAGTAAAGGGCTCGGGT 60.134 52.381 0.00 0.00 0.00 5.28
3040 3296 2.103601 GCATAAGTAAAGGGCTCGGGTA 59.896 50.000 0.00 0.00 0.00 3.69
3041 3297 3.432608 GCATAAGTAAAGGGCTCGGGTAA 60.433 47.826 0.00 0.00 0.00 2.85
3042 3298 4.377897 CATAAGTAAAGGGCTCGGGTAAG 58.622 47.826 0.00 0.00 0.00 2.34
3043 3299 2.242882 AGTAAAGGGCTCGGGTAAGA 57.757 50.000 0.00 0.00 0.00 2.10
3044 3300 2.108970 AGTAAAGGGCTCGGGTAAGAG 58.891 52.381 0.00 0.00 41.03 2.85
3045 3301 2.105766 GTAAAGGGCTCGGGTAAGAGA 58.894 52.381 0.00 0.00 40.57 3.10
3046 3302 1.880941 AAAGGGCTCGGGTAAGAGAT 58.119 50.000 0.00 0.00 40.57 2.75
3047 3303 2.769602 AAGGGCTCGGGTAAGAGATA 57.230 50.000 0.00 0.00 40.57 1.98
3048 3304 2.769602 AGGGCTCGGGTAAGAGATAA 57.230 50.000 0.00 0.00 40.57 1.75
3049 3305 2.317973 AGGGCTCGGGTAAGAGATAAC 58.682 52.381 0.00 0.00 40.57 1.89
3050 3306 1.343789 GGGCTCGGGTAAGAGATAACC 59.656 57.143 0.00 0.00 40.57 2.85
3055 3311 2.816204 GGGTAAGAGATAACCGAGGC 57.184 55.000 0.00 0.00 36.57 4.70
3056 3312 2.037144 GGGTAAGAGATAACCGAGGCA 58.963 52.381 0.00 0.00 36.57 4.75
3057 3313 2.223994 GGGTAAGAGATAACCGAGGCAC 60.224 54.545 0.00 0.00 36.57 5.01
3058 3314 2.543238 GGTAAGAGATAACCGAGGCACG 60.543 54.545 0.00 0.00 42.18 5.34
3059 3315 0.179108 AAGAGATAACCGAGGCACGC 60.179 55.000 0.00 0.00 41.07 5.34
3079 3335 0.237761 GGAGACGACGATGTATCCCG 59.762 60.000 12.39 0.00 43.01 5.14
3080 3336 1.224075 GAGACGACGATGTATCCCGA 58.776 55.000 0.00 0.00 0.00 5.14
3081 3337 1.600957 GAGACGACGATGTATCCCGAA 59.399 52.381 0.00 0.00 0.00 4.30
3082 3338 1.602851 AGACGACGATGTATCCCGAAG 59.397 52.381 0.00 0.00 0.00 3.79
3083 3339 1.332997 GACGACGATGTATCCCGAAGT 59.667 52.381 0.00 0.00 0.00 3.01
3084 3340 1.747355 ACGACGATGTATCCCGAAGTT 59.253 47.619 0.00 0.00 0.00 2.66
3085 3341 2.223433 ACGACGATGTATCCCGAAGTTC 60.223 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.514458 TCCTTCCTTCCTTTGATGCC 57.486 50.000 0.00 0.00 0.00 4.40
119 120 1.547372 CAGGCCTTTGCTTGCTTGTAT 59.453 47.619 0.00 0.00 37.79 2.29
140 141 1.084289 CTTGCCCTTAACGTGGTAGC 58.916 55.000 0.00 0.00 0.00 3.58
220 222 5.680229 CGTACTAGTCTGTAAAATAGCACCG 59.320 44.000 0.00 0.00 0.00 4.94
221 223 6.789262 TCGTACTAGTCTGTAAAATAGCACC 58.211 40.000 0.00 0.00 0.00 5.01
240 245 5.467399 ACAGATCAGCACTAGTAGATCGTAC 59.533 44.000 18.67 4.55 41.24 3.67
241 246 5.467063 CACAGATCAGCACTAGTAGATCGTA 59.533 44.000 18.67 0.00 41.24 3.43
242 247 4.274705 CACAGATCAGCACTAGTAGATCGT 59.725 45.833 18.67 16.89 41.24 3.73
278 283 7.989826 AGCAGATGAATGGTTCAGTAATAAAC 58.010 34.615 0.00 0.00 43.98 2.01
279 284 9.109393 GTAGCAGATGAATGGTTCAGTAATAAA 57.891 33.333 0.00 0.00 43.98 1.40
280 285 8.486210 AGTAGCAGATGAATGGTTCAGTAATAA 58.514 33.333 0.00 0.00 43.98 1.40
281 286 7.928167 CAGTAGCAGATGAATGGTTCAGTAATA 59.072 37.037 0.00 0.00 43.98 0.98
282 287 6.765036 CAGTAGCAGATGAATGGTTCAGTAAT 59.235 38.462 0.00 0.00 43.98 1.89
301 307 5.134661 AGTGAGGGAGTAGATAACAGTAGC 58.865 45.833 0.00 0.00 0.00 3.58
302 308 7.446013 CCTAAGTGAGGGAGTAGATAACAGTAG 59.554 44.444 0.00 0.00 42.39 2.57
306 312 4.894114 GCCTAAGTGAGGGAGTAGATAACA 59.106 45.833 0.00 0.00 46.81 2.41
308 314 4.078805 TGGCCTAAGTGAGGGAGTAGATAA 60.079 45.833 3.32 0.00 46.81 1.75
311 317 1.644337 TGGCCTAAGTGAGGGAGTAGA 59.356 52.381 3.32 0.00 46.81 2.59
312 318 1.757699 GTGGCCTAAGTGAGGGAGTAG 59.242 57.143 3.32 0.00 46.81 2.57
314 320 0.178903 TGTGGCCTAAGTGAGGGAGT 60.179 55.000 3.32 0.00 46.81 3.85
315 321 1.139853 GATGTGGCCTAAGTGAGGGAG 59.860 57.143 3.32 0.00 46.81 4.30
316 322 1.204146 GATGTGGCCTAAGTGAGGGA 58.796 55.000 3.32 0.00 46.81 4.20
317 323 1.207791 AGATGTGGCCTAAGTGAGGG 58.792 55.000 3.32 0.00 46.81 4.30
318 324 4.262377 CATCTAGATGTGGCCTAAGTGAGG 60.262 50.000 22.42 0.00 39.98 3.86
320 326 4.944619 CATCTAGATGTGGCCTAAGTGA 57.055 45.455 22.42 0.00 34.23 3.41
382 388 9.619316 CACAAAATGTGTTAGATAATTCCGAAA 57.381 29.630 2.36 0.00 43.08 3.46
399 405 3.638160 ACTGGACTGATTGCACAAAATGT 59.362 39.130 0.00 0.00 0.00 2.71
400 406 4.247267 ACTGGACTGATTGCACAAAATG 57.753 40.909 0.00 0.00 0.00 2.32
401 407 5.047802 CCTTACTGGACTGATTGCACAAAAT 60.048 40.000 0.00 0.00 38.35 1.82
402 408 4.278170 CCTTACTGGACTGATTGCACAAAA 59.722 41.667 0.00 0.00 38.35 2.44
403 409 3.820467 CCTTACTGGACTGATTGCACAAA 59.180 43.478 0.00 0.00 38.35 2.83
404 410 3.072330 TCCTTACTGGACTGATTGCACAA 59.928 43.478 0.00 0.00 40.56 3.33
405 411 2.637382 TCCTTACTGGACTGATTGCACA 59.363 45.455 0.00 0.00 40.56 4.57
406 412 3.334583 TCCTTACTGGACTGATTGCAC 57.665 47.619 0.00 0.00 40.56 4.57
440 446 9.813446 GGAATTTCAAATAATGATGAGCTCTTT 57.187 29.630 16.19 1.95 38.03 2.52
441 447 8.974238 TGGAATTTCAAATAATGATGAGCTCTT 58.026 29.630 16.19 8.82 38.03 2.85
442 448 8.529424 TGGAATTTCAAATAATGATGAGCTCT 57.471 30.769 16.19 0.00 38.03 4.09
443 449 9.590451 TTTGGAATTTCAAATAATGATGAGCTC 57.410 29.630 7.87 6.82 38.03 4.09
444 450 9.947433 TTTTGGAATTTCAAATAATGATGAGCT 57.053 25.926 12.70 0.00 38.03 4.09
445 451 9.977762 GTTTTGGAATTTCAAATAATGATGAGC 57.022 29.630 12.70 0.00 38.03 4.26
447 453 9.149225 CCGTTTTGGAATTTCAAATAATGATGA 57.851 29.630 12.70 0.00 42.00 2.92
448 454 8.934825 ACCGTTTTGGAATTTCAAATAATGATG 58.065 29.630 12.70 3.35 42.00 3.07
450 456 8.894768 AACCGTTTTGGAATTTCAAATAATGA 57.105 26.923 12.70 0.00 42.00 2.57
454 460 8.604890 GTTCAAACCGTTTTGGAATTTCAAATA 58.395 29.630 12.70 1.96 42.23 1.40
457 463 5.062308 CGTTCAAACCGTTTTGGAATTTCAA 59.938 36.000 5.55 0.00 42.23 2.69
463 469 1.469423 GCCGTTCAAACCGTTTTGGAA 60.469 47.619 5.55 0.00 42.23 3.53
465 471 0.179134 TGCCGTTCAAACCGTTTTGG 60.179 50.000 5.55 0.00 42.23 3.28
470 476 3.645975 CGCTGCCGTTCAAACCGT 61.646 61.111 0.00 0.00 0.00 4.83
472 478 2.677573 AAAGCGCTGCCGTTCAAACC 62.678 55.000 12.58 0.00 36.67 3.27
481 487 1.372128 CCTGTTTGAAAGCGCTGCC 60.372 57.895 12.58 6.50 0.00 4.85
482 488 0.242017 ATCCTGTTTGAAAGCGCTGC 59.758 50.000 12.58 7.21 0.00 5.25
483 489 1.536766 TGATCCTGTTTGAAAGCGCTG 59.463 47.619 12.58 0.00 0.00 5.18
484 490 1.537202 GTGATCCTGTTTGAAAGCGCT 59.463 47.619 2.64 2.64 0.00 5.92
485 491 1.401539 GGTGATCCTGTTTGAAAGCGC 60.402 52.381 0.00 0.00 0.00 5.92
486 492 1.200020 GGGTGATCCTGTTTGAAAGCG 59.800 52.381 0.00 0.00 0.00 4.68
759 786 4.270153 AGGGTCTGGGTCTGGGCA 62.270 66.667 0.00 0.00 0.00 5.36
760 787 2.531483 TAGAGGGTCTGGGTCTGGGC 62.531 65.000 0.00 0.00 0.00 5.36
761 788 0.688087 GTAGAGGGTCTGGGTCTGGG 60.688 65.000 0.00 0.00 0.00 4.45
762 789 0.688087 GGTAGAGGGTCTGGGTCTGG 60.688 65.000 0.00 0.00 0.00 3.86
763 790 1.038130 CGGTAGAGGGTCTGGGTCTG 61.038 65.000 0.00 0.00 0.00 3.51
764 791 1.306970 CGGTAGAGGGTCTGGGTCT 59.693 63.158 0.00 0.00 0.00 3.85
765 792 0.614134 AACGGTAGAGGGTCTGGGTC 60.614 60.000 0.00 0.00 0.00 4.46
766 793 0.178912 AAACGGTAGAGGGTCTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
767 794 0.981943 AAAACGGTAGAGGGTCTGGG 59.018 55.000 0.00 0.00 0.00 4.45
768 795 2.853235 AAAAACGGTAGAGGGTCTGG 57.147 50.000 0.00 0.00 0.00 3.86
788 818 1.782201 ATCCCACTGCAACTGCTGGA 61.782 55.000 10.68 7.99 43.15 3.86
835 865 1.816224 GGAAAAAGTGGCTGCCGATTA 59.184 47.619 14.98 0.00 0.00 1.75
849 879 1.546998 GGAGGAAGGAAGCCGGAAAAA 60.547 52.381 5.05 0.00 0.00 1.94
873 903 9.973450 TCTAGCTCTAGCAGTTATAAAAAGATG 57.027 33.333 4.54 0.00 45.16 2.90
875 905 8.138712 GCTCTAGCTCTAGCAGTTATAAAAAGA 58.861 37.037 13.81 0.00 45.16 2.52
876 906 8.293114 GCTCTAGCTCTAGCAGTTATAAAAAG 57.707 38.462 13.81 0.00 45.16 2.27
902 943 4.589374 GCTGGGGTCTCTAATAAGCTCTAA 59.411 45.833 0.00 0.00 0.00 2.10
903 944 4.153411 GCTGGGGTCTCTAATAAGCTCTA 58.847 47.826 0.00 0.00 0.00 2.43
904 945 2.969262 GCTGGGGTCTCTAATAAGCTCT 59.031 50.000 0.00 0.00 0.00 4.09
905 946 2.037902 GGCTGGGGTCTCTAATAAGCTC 59.962 54.545 0.00 0.00 0.00 4.09
906 947 2.050918 GGCTGGGGTCTCTAATAAGCT 58.949 52.381 0.00 0.00 0.00 3.74
907 948 1.072489 GGGCTGGGGTCTCTAATAAGC 59.928 57.143 0.00 0.00 0.00 3.09
908 949 1.700186 GGGGCTGGGGTCTCTAATAAG 59.300 57.143 0.00 0.00 0.00 1.73
909 950 1.297141 AGGGGCTGGGGTCTCTAATAA 59.703 52.381 0.00 0.00 0.00 1.40
910 951 0.949582 AGGGGCTGGGGTCTCTAATA 59.050 55.000 0.00 0.00 0.00 0.98
911 952 0.046397 AAGGGGCTGGGGTCTCTAAT 59.954 55.000 0.00 0.00 0.00 1.73
912 953 0.620700 GAAGGGGCTGGGGTCTCTAA 60.621 60.000 0.00 0.00 0.00 2.10
948 989 1.270907 GCCAAGACTCTGGAGGAGAA 58.729 55.000 7.59 0.00 44.45 2.87
958 1003 0.037447 AAGCAAGGAGGCCAAGACTC 59.963 55.000 5.01 0.00 36.87 3.36
1005 1056 1.383803 AGATGGCTGAGACCCCCTC 60.384 63.158 0.00 0.00 42.30 4.30
1082 1133 1.528292 CTAATCGGAGGAGGCGGAGG 61.528 65.000 0.00 0.00 0.00 4.30
1086 1137 2.340443 GCCTAATCGGAGGAGGCG 59.660 66.667 14.97 0.00 45.94 5.52
1121 1172 5.079689 TGAACAGACAGTCAAACAGTGTA 57.920 39.130 2.66 0.00 38.93 2.90
1137 1188 2.253758 CCCACACCGTGCTGAACAG 61.254 63.158 0.00 0.00 31.34 3.16
1145 1196 2.978010 GAGCAACCCCACACCGTG 60.978 66.667 0.00 0.00 0.00 4.94
1247 1314 2.288152 GGTGAAAAATGCGGCAGAAAGA 60.288 45.455 9.25 0.00 0.00 2.52
1289 1358 7.916977 CACTAATCATAACATGGACCACATTTG 59.083 37.037 0.00 0.00 37.84 2.32
1321 1390 8.338072 AGATGATTAAGGAGTACTATGTACCG 57.662 38.462 0.00 0.00 0.00 4.02
1330 1399 9.615295 GAATTAGACGAGATGATTAAGGAGTAC 57.385 37.037 0.00 0.00 0.00 2.73
1333 1402 8.572185 TCTGAATTAGACGAGATGATTAAGGAG 58.428 37.037 0.00 0.00 0.00 3.69
1334 1403 8.465273 TCTGAATTAGACGAGATGATTAAGGA 57.535 34.615 0.00 0.00 0.00 3.36
1335 1404 7.812191 CCTCTGAATTAGACGAGATGATTAAGG 59.188 40.741 0.00 0.00 0.00 2.69
1336 1405 8.572185 TCCTCTGAATTAGACGAGATGATTAAG 58.428 37.037 0.00 0.00 0.00 1.85
1337 1406 8.465273 TCCTCTGAATTAGACGAGATGATTAA 57.535 34.615 0.00 0.00 0.00 1.40
1338 1407 7.939588 TCTCCTCTGAATTAGACGAGATGATTA 59.060 37.037 0.00 0.00 40.43 1.75
1339 1408 6.775142 TCTCCTCTGAATTAGACGAGATGATT 59.225 38.462 0.00 0.00 40.43 2.57
1342 1411 5.048782 CCTCTCCTCTGAATTAGACGAGATG 60.049 48.000 4.72 0.18 42.67 2.90
1412 1482 4.328983 GTCATCTATTTTGAAACGGAGCGA 59.671 41.667 0.00 0.00 0.00 4.93
1413 1483 4.494199 GGTCATCTATTTTGAAACGGAGCG 60.494 45.833 0.00 0.00 0.00 5.03
1414 1484 4.201920 GGGTCATCTATTTTGAAACGGAGC 60.202 45.833 0.00 0.00 0.00 4.70
1415 1485 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
1416 1486 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
1417 1487 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
1418 1488 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
1419 1489 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
1420 1490 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
1421 1491 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
1422 1492 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
1423 1493 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
1424 1494 9.975218 ATAGTACAAAGTTGGGTCATCTATTTT 57.025 29.630 0.00 0.00 0.00 1.82
1427 1497 9.435570 ACTATAGTACAAAGTTGGGTCATCTAT 57.564 33.333 2.75 0.00 0.00 1.98
1428 1498 8.834004 ACTATAGTACAAAGTTGGGTCATCTA 57.166 34.615 2.75 0.00 0.00 1.98
1429 1499 7.735326 ACTATAGTACAAAGTTGGGTCATCT 57.265 36.000 2.75 0.00 0.00 2.90
1430 1500 9.530633 CTAACTATAGTACAAAGTTGGGTCATC 57.469 37.037 5.65 0.00 35.23 2.92
1431 1501 9.043548 ACTAACTATAGTACAAAGTTGGGTCAT 57.956 33.333 5.65 0.00 40.62 3.06
1432 1502 8.426569 ACTAACTATAGTACAAAGTTGGGTCA 57.573 34.615 5.65 1.34 40.62 4.02
1459 1529 8.717821 CGTTCCAAAATAGATGACTCAACTTTA 58.282 33.333 0.00 0.00 0.00 1.85
1460 1530 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
1461 1531 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
1462 1532 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
1463 1533 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
1464 1534 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
1465 1535 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
1466 1536 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1467 1537 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1468 1538 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1469 1539 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1470 1540 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1471 1541 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1472 1542 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1473 1543 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1474 1544 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
1475 1545 2.026542 GGTACTCCCTCCGTTCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
1476 1546 1.348696 GGTACTCCCTCCGTTCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
1477 1547 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
1478 1548 0.178926 TGGTACTCCCTCCGTTCCAA 60.179 55.000 0.00 0.00 30.28 3.53
1479 1549 0.613853 CTGGTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 32.07 3.53
1480 1550 1.957765 GCTGGTACTCCCTCCGTTCC 61.958 65.000 0.00 0.00 0.00 3.62
1481 1551 1.516423 GCTGGTACTCCCTCCGTTC 59.484 63.158 0.00 0.00 0.00 3.95
1482 1552 2.348888 CGCTGGTACTCCCTCCGTT 61.349 63.158 0.00 0.00 0.00 4.44
1483 1553 2.754658 CGCTGGTACTCCCTCCGT 60.755 66.667 0.00 0.00 0.00 4.69
1484 1554 2.754658 ACGCTGGTACTCCCTCCG 60.755 66.667 0.00 0.00 34.80 4.63
1485 1555 1.542187 AACACGCTGGTACTCCCTCC 61.542 60.000 0.00 0.00 0.00 4.30
1486 1556 0.108756 GAACACGCTGGTACTCCCTC 60.109 60.000 0.00 0.00 0.00 4.30
1487 1557 0.542232 AGAACACGCTGGTACTCCCT 60.542 55.000 0.00 0.00 0.00 4.20
1488 1558 0.320697 AAGAACACGCTGGTACTCCC 59.679 55.000 0.00 0.00 0.00 4.30
1489 1559 1.000506 TCAAGAACACGCTGGTACTCC 59.999 52.381 0.00 0.00 0.00 3.85
1490 1560 2.433868 TCAAGAACACGCTGGTACTC 57.566 50.000 0.00 0.00 0.00 2.59
1491 1561 3.402628 AATCAAGAACACGCTGGTACT 57.597 42.857 0.00 0.00 0.00 2.73
1492 1562 4.927425 TCTAAATCAAGAACACGCTGGTAC 59.073 41.667 0.00 0.00 0.00 3.34
1493 1563 5.142061 TCTAAATCAAGAACACGCTGGTA 57.858 39.130 0.00 0.00 0.00 3.25
1494 1564 4.002906 TCTAAATCAAGAACACGCTGGT 57.997 40.909 0.00 0.00 0.00 4.00
1495 1565 5.276395 CGTATCTAAATCAAGAACACGCTGG 60.276 44.000 0.00 0.00 0.00 4.85
1521 1591 7.948384 TCAACTGATGATTCTTTTGGAACAAGC 60.948 37.037 0.00 0.00 36.83 4.01
1534 1604 5.582269 TCGGATCAAGTTCAACTGATGATTC 59.418 40.000 6.24 3.85 38.03 2.52
1579 1649 9.143631 CAAAAACAGAGAAATGTCAGTTTCTTT 57.856 29.630 3.69 0.00 45.72 2.52
1602 1672 2.339403 TGCTTCCTGCGCAATCAAA 58.661 47.368 13.05 2.29 46.63 2.69
1610 1680 3.114616 CTGACGGTGCTTCCTGCG 61.115 66.667 0.00 0.00 46.63 5.18
1918 1997 2.016905 AGTAGCAGTTCCAGGAGTGT 57.983 50.000 0.00 0.00 0.00 3.55
1991 2070 3.009115 TCTGCAGGTGGGTAGGCC 61.009 66.667 15.13 0.00 0.00 5.19
1996 2075 1.326213 CGAGATCTCTGCAGGTGGGT 61.326 60.000 20.26 0.41 0.00 4.51
1999 2078 1.227205 GCCGAGATCTCTGCAGGTG 60.227 63.158 28.12 9.00 39.24 4.00
2067 2146 2.946329 AGATCAGTAGTAGGTGCACGAG 59.054 50.000 11.45 0.00 0.00 4.18
2193 2281 5.069516 ACCTCAACCAATTAATCATCATGCC 59.930 40.000 0.00 0.00 0.00 4.40
2219 2307 1.095228 CCACACCAACGCACACTCTT 61.095 55.000 0.00 0.00 0.00 2.85
2228 2316 0.309612 GCAGTTAACCCACACCAACG 59.690 55.000 0.88 0.00 0.00 4.10
2260 2349 2.618241 GGCAACACAGACACATCTCAAA 59.382 45.455 0.00 0.00 30.42 2.69
2261 2350 2.158769 AGGCAACACAGACACATCTCAA 60.159 45.455 0.00 0.00 41.41 3.02
2262 2351 1.417517 AGGCAACACAGACACATCTCA 59.582 47.619 0.00 0.00 41.41 3.27
2263 2352 1.802960 CAGGCAACACAGACACATCTC 59.197 52.381 0.00 0.00 41.41 2.75
2264 2353 1.141657 ACAGGCAACACAGACACATCT 59.858 47.619 0.00 0.00 41.41 2.90
2265 2354 1.265095 CACAGGCAACACAGACACATC 59.735 52.381 0.00 0.00 41.41 3.06
2266 2355 1.311859 CACAGGCAACACAGACACAT 58.688 50.000 0.00 0.00 41.41 3.21
2267 2356 0.035534 ACACAGGCAACACAGACACA 60.036 50.000 0.00 0.00 41.41 3.72
2268 2357 0.657840 GACACAGGCAACACAGACAC 59.342 55.000 0.00 0.00 41.41 3.67
2269 2358 0.541392 AGACACAGGCAACACAGACA 59.459 50.000 0.00 0.00 41.41 3.41
2270 2359 1.331756 CAAGACACAGGCAACACAGAC 59.668 52.381 0.00 0.00 41.41 3.51
2271 2360 1.065491 ACAAGACACAGGCAACACAGA 60.065 47.619 0.00 0.00 41.41 3.41
2272 2361 1.382522 ACAAGACACAGGCAACACAG 58.617 50.000 0.00 0.00 41.41 3.66
2273 2362 1.832883 AACAAGACACAGGCAACACA 58.167 45.000 0.00 0.00 41.41 3.72
2274 2363 2.163412 TCAAACAAGACACAGGCAACAC 59.837 45.455 0.00 0.00 41.41 3.32
2275 2364 2.423185 CTCAAACAAGACACAGGCAACA 59.577 45.455 0.00 0.00 41.41 3.33
2276 2365 2.682856 TCTCAAACAAGACACAGGCAAC 59.317 45.455 0.00 0.00 0.00 4.17
2277 2366 2.997980 TCTCAAACAAGACACAGGCAA 58.002 42.857 0.00 0.00 0.00 4.52
2278 2367 2.708216 TCTCAAACAAGACACAGGCA 57.292 45.000 0.00 0.00 0.00 4.75
2279 2368 2.880890 ACATCTCAAACAAGACACAGGC 59.119 45.455 0.00 0.00 0.00 4.85
2280 2369 3.499918 GGACATCTCAAACAAGACACAGG 59.500 47.826 0.00 0.00 0.00 4.00
2281 2370 4.129380 TGGACATCTCAAACAAGACACAG 58.871 43.478 0.00 0.00 0.00 3.66
2282 2371 4.149511 TGGACATCTCAAACAAGACACA 57.850 40.909 0.00 0.00 0.00 3.72
2283 2372 5.239306 TGAATGGACATCTCAAACAAGACAC 59.761 40.000 0.00 0.00 0.00 3.67
2284 2373 5.239306 GTGAATGGACATCTCAAACAAGACA 59.761 40.000 0.00 0.00 0.00 3.41
2285 2374 5.471456 AGTGAATGGACATCTCAAACAAGAC 59.529 40.000 0.00 0.00 0.00 3.01
2286 2375 5.471116 CAGTGAATGGACATCTCAAACAAGA 59.529 40.000 0.00 0.00 0.00 3.02
2287 2376 5.471116 TCAGTGAATGGACATCTCAAACAAG 59.529 40.000 0.00 0.00 0.00 3.16
2293 2382 3.701040 TCGATCAGTGAATGGACATCTCA 59.299 43.478 0.00 0.00 0.00 3.27
2326 2429 7.124147 ACAAACATGGATTAATAAGTTCCCCAG 59.876 37.037 0.00 0.00 0.00 4.45
2377 2491 3.538591 CAGGACACACATGCAGTCATAT 58.461 45.455 12.86 0.00 34.04 1.78
2378 2492 2.976589 CAGGACACACATGCAGTCATA 58.023 47.619 12.86 0.00 34.04 2.15
2379 2493 1.817357 CAGGACACACATGCAGTCAT 58.183 50.000 12.86 5.00 34.04 3.06
2380 2494 3.310727 CAGGACACACATGCAGTCA 57.689 52.632 12.86 0.00 34.04 3.41
2396 2510 0.178992 TTTCCCCACAACTGGAGCAG 60.179 55.000 0.00 0.00 40.55 4.24
2461 2687 5.725362 TCCCGCAAAAGAAAAGAAAAGAAA 58.275 33.333 0.00 0.00 0.00 2.52
2462 2688 5.331876 TCCCGCAAAAGAAAAGAAAAGAA 57.668 34.783 0.00 0.00 0.00 2.52
2463 2689 4.993029 TCCCGCAAAAGAAAAGAAAAGA 57.007 36.364 0.00 0.00 0.00 2.52
2464 2690 5.580691 AGTTTCCCGCAAAAGAAAAGAAAAG 59.419 36.000 0.00 0.00 33.98 2.27
2465 2691 5.350091 CAGTTTCCCGCAAAAGAAAAGAAAA 59.650 36.000 0.00 0.00 33.98 2.29
2469 2695 3.551485 CACAGTTTCCCGCAAAAGAAAAG 59.449 43.478 0.00 0.00 33.98 2.27
2479 2705 2.639286 CTGCACACAGTTTCCCGC 59.361 61.111 0.00 0.00 39.22 6.13
2482 2708 0.819259 TCAGGCTGCACACAGTTTCC 60.819 55.000 10.34 0.00 46.30 3.13
2484 2710 0.107017 ACTCAGGCTGCACACAGTTT 60.107 50.000 10.34 0.00 46.30 2.66
2497 2723 3.106672 GAGCACGACGTTTATACTCAGG 58.893 50.000 0.00 0.00 0.00 3.86
2498 2724 2.776765 CGAGCACGACGTTTATACTCAG 59.223 50.000 0.00 0.00 42.66 3.35
2500 2726 2.525096 CACGAGCACGACGTTTATACTC 59.475 50.000 11.40 0.00 42.07 2.59
2501 2727 2.095567 ACACGAGCACGACGTTTATACT 60.096 45.455 11.40 0.00 42.07 2.12
2502 2728 2.245096 ACACGAGCACGACGTTTATAC 58.755 47.619 11.40 0.00 42.07 1.47
2506 2732 1.717645 GAATACACGAGCACGACGTTT 59.282 47.619 11.40 0.00 42.07 3.60
2507 2733 1.334054 GAATACACGAGCACGACGTT 58.666 50.000 11.40 0.00 42.07 3.99
2508 2734 0.791983 CGAATACACGAGCACGACGT 60.792 55.000 11.40 9.42 44.83 4.34
2543 2786 6.693545 CGCAATGGTACTTGTTCACTTTTAAA 59.306 34.615 0.00 0.00 0.00 1.52
2595 2844 8.675504 TCGTTTTGTTTCCTTTTACAGTATTCA 58.324 29.630 0.00 0.00 0.00 2.57
2600 2849 7.329962 CCTTTTCGTTTTGTTTCCTTTTACAGT 59.670 33.333 0.00 0.00 0.00 3.55
2604 2853 9.702494 TTAACCTTTTCGTTTTGTTTCCTTTTA 57.298 25.926 0.00 0.00 0.00 1.52
2615 2864 5.286797 GCGTTCAAGTTAACCTTTTCGTTTT 59.713 36.000 0.88 0.00 0.00 2.43
2629 2878 1.157870 CGGTGGAGTGCGTTCAAGTT 61.158 55.000 0.00 0.00 0.00 2.66
2780 3036 9.844790 CAAATCTTGATGCAAAGTAAATAGACA 57.155 29.630 0.00 0.00 0.00 3.41
2781 3037 9.846248 ACAAATCTTGATGCAAAGTAAATAGAC 57.154 29.630 0.00 0.00 0.00 2.59
2783 3039 9.294030 GGACAAATCTTGATGCAAAGTAAATAG 57.706 33.333 0.00 0.00 0.00 1.73
2784 3040 8.250332 GGGACAAATCTTGATGCAAAGTAAATA 58.750 33.333 0.00 0.00 0.00 1.40
2785 3041 7.099120 GGGACAAATCTTGATGCAAAGTAAAT 58.901 34.615 0.00 0.00 0.00 1.40
2786 3042 6.041409 TGGGACAAATCTTGATGCAAAGTAAA 59.959 34.615 0.00 0.00 31.92 2.01
2787 3043 5.538053 TGGGACAAATCTTGATGCAAAGTAA 59.462 36.000 0.00 0.00 31.92 2.24
2788 3044 5.076182 TGGGACAAATCTTGATGCAAAGTA 58.924 37.500 0.00 0.00 31.92 2.24
2789 3045 3.896888 TGGGACAAATCTTGATGCAAAGT 59.103 39.130 0.00 0.00 31.92 2.66
2790 3046 4.524316 TGGGACAAATCTTGATGCAAAG 57.476 40.909 0.00 0.00 31.92 2.77
2822 3078 9.403583 GGGACCAAATATCTTTCTAACACATAA 57.596 33.333 0.00 0.00 0.00 1.90
2823 3079 8.974060 GGGACCAAATATCTTTCTAACACATA 57.026 34.615 0.00 0.00 0.00 2.29
2824 3080 7.881775 GGGACCAAATATCTTTCTAACACAT 57.118 36.000 0.00 0.00 0.00 3.21
2844 3100 2.076863 CACGATCTTTCACAAGGGGAC 58.923 52.381 0.00 0.00 0.00 4.46
2845 3101 1.003118 CCACGATCTTTCACAAGGGGA 59.997 52.381 0.00 0.00 0.00 4.81
2846 3102 1.003118 TCCACGATCTTTCACAAGGGG 59.997 52.381 0.00 0.00 0.00 4.79
2847 3103 2.472695 TCCACGATCTTTCACAAGGG 57.527 50.000 0.00 0.00 0.00 3.95
2848 3104 3.338249 ACATCCACGATCTTTCACAAGG 58.662 45.455 0.00 0.00 0.00 3.61
2849 3105 3.061295 CGACATCCACGATCTTTCACAAG 59.939 47.826 0.00 0.00 0.00 3.16
2850 3106 2.993220 CGACATCCACGATCTTTCACAA 59.007 45.455 0.00 0.00 0.00 3.33
2851 3107 2.606108 CGACATCCACGATCTTTCACA 58.394 47.619 0.00 0.00 0.00 3.58
2852 3108 1.324736 GCGACATCCACGATCTTTCAC 59.675 52.381 0.00 0.00 0.00 3.18
2853 3109 1.640428 GCGACATCCACGATCTTTCA 58.360 50.000 0.00 0.00 0.00 2.69
2854 3110 0.931005 GGCGACATCCACGATCTTTC 59.069 55.000 0.00 0.00 0.00 2.62
2855 3111 0.537188 AGGCGACATCCACGATCTTT 59.463 50.000 0.00 0.00 0.00 2.52
2856 3112 1.338337 CTAGGCGACATCCACGATCTT 59.662 52.381 0.00 0.00 0.00 2.40
2857 3113 0.955178 CTAGGCGACATCCACGATCT 59.045 55.000 0.00 0.00 0.00 2.75
2858 3114 0.952280 TCTAGGCGACATCCACGATC 59.048 55.000 0.00 0.00 0.00 3.69
2859 3115 0.955178 CTCTAGGCGACATCCACGAT 59.045 55.000 0.00 0.00 0.00 3.73
2860 3116 1.101635 CCTCTAGGCGACATCCACGA 61.102 60.000 0.00 0.00 0.00 4.35
2861 3117 1.360551 CCTCTAGGCGACATCCACG 59.639 63.158 0.00 0.00 0.00 4.94
2862 3118 1.742768 CCCTCTAGGCGACATCCAC 59.257 63.158 0.00 0.00 0.00 4.02
2863 3119 1.457643 CCCCTCTAGGCGACATCCA 60.458 63.158 0.00 0.00 0.00 3.41
2864 3120 2.210711 CCCCCTCTAGGCGACATCC 61.211 68.421 0.00 0.00 0.00 3.51
2865 3121 3.460995 CCCCCTCTAGGCGACATC 58.539 66.667 0.00 0.00 0.00 3.06
2879 3135 3.096092 TGTGCTTGACAAATTATCCCCC 58.904 45.455 0.00 0.00 0.00 5.40
2880 3136 4.799564 TTGTGCTTGACAAATTATCCCC 57.200 40.909 0.00 0.00 41.80 4.81
2889 3145 4.218635 TGTTGTAGGTTTTGTGCTTGACAA 59.781 37.500 0.00 0.00 43.11 3.18
2890 3146 3.759086 TGTTGTAGGTTTTGTGCTTGACA 59.241 39.130 0.00 0.00 0.00 3.58
2891 3147 4.364415 TGTTGTAGGTTTTGTGCTTGAC 57.636 40.909 0.00 0.00 0.00 3.18
2892 3148 4.461081 AGTTGTTGTAGGTTTTGTGCTTGA 59.539 37.500 0.00 0.00 0.00 3.02
2893 3149 4.743493 AGTTGTTGTAGGTTTTGTGCTTG 58.257 39.130 0.00 0.00 0.00 4.01
2894 3150 5.067283 CCTAGTTGTTGTAGGTTTTGTGCTT 59.933 40.000 0.00 0.00 33.51 3.91
2895 3151 4.578928 CCTAGTTGTTGTAGGTTTTGTGCT 59.421 41.667 0.00 0.00 33.51 4.40
2896 3152 4.791734 GCCTAGTTGTTGTAGGTTTTGTGC 60.792 45.833 0.00 0.00 39.56 4.57
2897 3153 4.578928 AGCCTAGTTGTTGTAGGTTTTGTG 59.421 41.667 0.00 0.00 39.56 3.33
2898 3154 4.788679 AGCCTAGTTGTTGTAGGTTTTGT 58.211 39.130 0.00 0.00 39.56 2.83
2899 3155 4.819630 TGAGCCTAGTTGTTGTAGGTTTTG 59.180 41.667 0.00 0.00 39.56 2.44
2900 3156 4.820173 GTGAGCCTAGTTGTTGTAGGTTTT 59.180 41.667 0.00 0.00 39.56 2.43
2901 3157 4.386711 GTGAGCCTAGTTGTTGTAGGTTT 58.613 43.478 0.00 0.00 39.56 3.27
2902 3158 3.244457 GGTGAGCCTAGTTGTTGTAGGTT 60.244 47.826 0.00 0.00 39.56 3.50
2903 3159 2.302157 GGTGAGCCTAGTTGTTGTAGGT 59.698 50.000 0.00 0.00 39.56 3.08
2904 3160 2.567615 AGGTGAGCCTAGTTGTTGTAGG 59.432 50.000 0.00 0.00 44.90 3.18
2905 3161 3.963428 AGGTGAGCCTAGTTGTTGTAG 57.037 47.619 0.00 0.00 44.90 2.74
2922 3178 2.656947 AGTTGTTGGTGCACATAGGT 57.343 45.000 20.43 0.00 0.00 3.08
2923 3179 4.675146 GCATAAGTTGTTGGTGCACATAGG 60.675 45.833 20.43 1.52 35.93 2.57
2924 3180 4.156556 AGCATAAGTTGTTGGTGCACATAG 59.843 41.667 20.43 0.00 38.23 2.23
2925 3181 4.078537 AGCATAAGTTGTTGGTGCACATA 58.921 39.130 20.43 3.77 38.23 2.29
2926 3182 2.892852 AGCATAAGTTGTTGGTGCACAT 59.107 40.909 20.43 0.00 38.23 3.21
2927 3183 2.305928 AGCATAAGTTGTTGGTGCACA 58.694 42.857 20.43 1.62 38.23 4.57
2928 3184 4.475944 CTTAGCATAAGTTGTTGGTGCAC 58.524 43.478 8.80 8.80 38.23 4.57
2929 3185 3.057596 GCTTAGCATAAGTTGTTGGTGCA 60.058 43.478 0.00 0.00 38.23 4.57
2930 3186 3.057596 TGCTTAGCATAAGTTGTTGGTGC 60.058 43.478 1.39 0.00 31.71 5.01
2931 3187 4.764679 TGCTTAGCATAAGTTGTTGGTG 57.235 40.909 1.39 0.00 31.71 4.17
2932 3188 5.070001 TCTTGCTTAGCATAAGTTGTTGGT 58.930 37.500 8.05 0.00 38.76 3.67
2933 3189 5.627499 TCTTGCTTAGCATAAGTTGTTGG 57.373 39.130 8.05 0.00 38.76 3.77
2934 3190 7.928908 TTTTCTTGCTTAGCATAAGTTGTTG 57.071 32.000 8.05 0.00 38.76 3.33
2935 3191 8.197439 AGTTTTTCTTGCTTAGCATAAGTTGTT 58.803 29.630 8.05 0.00 38.76 2.83
2936 3192 7.716612 AGTTTTTCTTGCTTAGCATAAGTTGT 58.283 30.769 8.05 0.00 38.76 3.32
2937 3193 9.118236 GTAGTTTTTCTTGCTTAGCATAAGTTG 57.882 33.333 8.05 0.00 38.76 3.16
2938 3194 9.067986 AGTAGTTTTTCTTGCTTAGCATAAGTT 57.932 29.630 8.05 0.00 38.76 2.66
2939 3195 8.622948 AGTAGTTTTTCTTGCTTAGCATAAGT 57.377 30.769 8.05 3.87 38.76 2.24
2942 3198 9.162764 CCTAAGTAGTTTTTCTTGCTTAGCATA 57.837 33.333 8.05 0.00 38.76 3.14
2943 3199 7.665974 ACCTAAGTAGTTTTTCTTGCTTAGCAT 59.334 33.333 8.05 0.00 38.76 3.79
2944 3200 6.996282 ACCTAAGTAGTTTTTCTTGCTTAGCA 59.004 34.615 1.39 1.39 38.14 3.49
2945 3201 7.298854 CACCTAAGTAGTTTTTCTTGCTTAGC 58.701 38.462 0.00 0.00 38.14 3.09
2946 3202 7.444487 ACCACCTAAGTAGTTTTTCTTGCTTAG 59.556 37.037 0.00 0.00 38.59 2.18
2947 3203 7.284820 ACCACCTAAGTAGTTTTTCTTGCTTA 58.715 34.615 0.00 0.00 0.00 3.09
2948 3204 6.127101 ACCACCTAAGTAGTTTTTCTTGCTT 58.873 36.000 0.00 0.00 0.00 3.91
2949 3205 5.691896 ACCACCTAAGTAGTTTTTCTTGCT 58.308 37.500 0.00 0.00 0.00 3.91
2950 3206 6.348295 GCTACCACCTAAGTAGTTTTTCTTGC 60.348 42.308 0.00 0.00 39.54 4.01
2951 3207 6.708949 TGCTACCACCTAAGTAGTTTTTCTTG 59.291 38.462 0.00 0.00 39.54 3.02
2952 3208 6.834107 TGCTACCACCTAAGTAGTTTTTCTT 58.166 36.000 0.00 0.00 39.54 2.52
2953 3209 6.429521 TGCTACCACCTAAGTAGTTTTTCT 57.570 37.500 0.00 0.00 39.54 2.52
2954 3210 6.932960 TCTTGCTACCACCTAAGTAGTTTTTC 59.067 38.462 0.00 0.00 39.54 2.29
2955 3211 6.834107 TCTTGCTACCACCTAAGTAGTTTTT 58.166 36.000 0.00 0.00 39.54 1.94
2956 3212 6.429521 TCTTGCTACCACCTAAGTAGTTTT 57.570 37.500 0.00 0.00 39.54 2.43
2957 3213 6.622427 ATCTTGCTACCACCTAAGTAGTTT 57.378 37.500 0.00 0.00 39.54 2.66
2958 3214 7.916077 ATATCTTGCTACCACCTAAGTAGTT 57.084 36.000 0.00 0.00 39.54 2.24
2959 3215 9.026121 CATATATCTTGCTACCACCTAAGTAGT 57.974 37.037 0.00 0.00 39.54 2.73
2960 3216 9.244292 TCATATATCTTGCTACCACCTAAGTAG 57.756 37.037 0.00 0.00 40.19 2.57
2961 3217 9.021807 GTCATATATCTTGCTACCACCTAAGTA 57.978 37.037 0.00 0.00 0.00 2.24
2962 3218 7.509318 TGTCATATATCTTGCTACCACCTAAGT 59.491 37.037 0.00 0.00 0.00 2.24
2963 3219 7.896811 TGTCATATATCTTGCTACCACCTAAG 58.103 38.462 0.00 0.00 0.00 2.18
2964 3220 7.849322 TGTCATATATCTTGCTACCACCTAA 57.151 36.000 0.00 0.00 0.00 2.69
2965 3221 7.728532 TCTTGTCATATATCTTGCTACCACCTA 59.271 37.037 0.00 0.00 0.00 3.08
2966 3222 6.554982 TCTTGTCATATATCTTGCTACCACCT 59.445 38.462 0.00 0.00 0.00 4.00
2967 3223 6.759272 TCTTGTCATATATCTTGCTACCACC 58.241 40.000 0.00 0.00 0.00 4.61
2968 3224 8.552034 GTTTCTTGTCATATATCTTGCTACCAC 58.448 37.037 0.00 0.00 0.00 4.16
2969 3225 8.264347 TGTTTCTTGTCATATATCTTGCTACCA 58.736 33.333 0.00 0.00 0.00 3.25
2970 3226 8.662781 TGTTTCTTGTCATATATCTTGCTACC 57.337 34.615 0.00 0.00 0.00 3.18
2981 3237 9.407380 TGTTAGCCATATTGTTTCTTGTCATAT 57.593 29.630 0.00 0.00 0.00 1.78
2982 3238 8.673711 GTGTTAGCCATATTGTTTCTTGTCATA 58.326 33.333 0.00 0.00 0.00 2.15
2983 3239 7.176515 TGTGTTAGCCATATTGTTTCTTGTCAT 59.823 33.333 0.00 0.00 0.00 3.06
2984 3240 6.488344 TGTGTTAGCCATATTGTTTCTTGTCA 59.512 34.615 0.00 0.00 0.00 3.58
2985 3241 6.908825 TGTGTTAGCCATATTGTTTCTTGTC 58.091 36.000 0.00 0.00 0.00 3.18
2986 3242 6.892658 TGTGTTAGCCATATTGTTTCTTGT 57.107 33.333 0.00 0.00 0.00 3.16
2987 3243 7.867403 ACTTTGTGTTAGCCATATTGTTTCTTG 59.133 33.333 0.00 0.00 0.00 3.02
2988 3244 7.951591 ACTTTGTGTTAGCCATATTGTTTCTT 58.048 30.769 0.00 0.00 0.00 2.52
2989 3245 7.524717 ACTTTGTGTTAGCCATATTGTTTCT 57.475 32.000 0.00 0.00 0.00 2.52
2990 3246 9.685828 TTTACTTTGTGTTAGCCATATTGTTTC 57.314 29.630 0.00 0.00 0.00 2.78
2991 3247 9.691362 CTTTACTTTGTGTTAGCCATATTGTTT 57.309 29.630 0.00 0.00 0.00 2.83
2992 3248 8.856103 ACTTTACTTTGTGTTAGCCATATTGTT 58.144 29.630 0.00 0.00 0.00 2.83
2993 3249 8.296713 CACTTTACTTTGTGTTAGCCATATTGT 58.703 33.333 0.00 0.00 0.00 2.71
2994 3250 7.273381 GCACTTTACTTTGTGTTAGCCATATTG 59.727 37.037 0.00 0.00 36.63 1.90
2995 3251 7.040062 TGCACTTTACTTTGTGTTAGCCATATT 60.040 33.333 0.00 0.00 36.63 1.28
2996 3252 6.432783 TGCACTTTACTTTGTGTTAGCCATAT 59.567 34.615 0.00 0.00 36.63 1.78
2997 3253 5.765677 TGCACTTTACTTTGTGTTAGCCATA 59.234 36.000 0.00 0.00 36.63 2.74
2998 3254 4.582656 TGCACTTTACTTTGTGTTAGCCAT 59.417 37.500 0.00 0.00 36.63 4.40
2999 3255 3.948473 TGCACTTTACTTTGTGTTAGCCA 59.052 39.130 0.00 0.00 36.63 4.75
3000 3256 4.561735 TGCACTTTACTTTGTGTTAGCC 57.438 40.909 0.00 0.00 36.63 3.93
3001 3257 7.360361 ACTTATGCACTTTACTTTGTGTTAGC 58.640 34.615 0.00 0.00 36.63 3.09
3004 3260 9.730420 CTTTACTTATGCACTTTACTTTGTGTT 57.270 29.630 0.00 0.00 36.63 3.32
3005 3261 8.349983 CCTTTACTTATGCACTTTACTTTGTGT 58.650 33.333 0.00 0.00 36.63 3.72
3006 3262 7.807907 CCCTTTACTTATGCACTTTACTTTGTG 59.192 37.037 0.00 0.00 37.26 3.33
3007 3263 7.523216 GCCCTTTACTTATGCACTTTACTTTGT 60.523 37.037 0.00 0.00 0.00 2.83
3008 3264 6.806739 GCCCTTTACTTATGCACTTTACTTTG 59.193 38.462 0.00 0.00 0.00 2.77
3009 3265 6.719829 AGCCCTTTACTTATGCACTTTACTTT 59.280 34.615 0.00 0.00 0.00 2.66
3010 3266 6.246163 AGCCCTTTACTTATGCACTTTACTT 58.754 36.000 0.00 0.00 0.00 2.24
3011 3267 5.816682 AGCCCTTTACTTATGCACTTTACT 58.183 37.500 0.00 0.00 0.00 2.24
3012 3268 5.220605 CGAGCCCTTTACTTATGCACTTTAC 60.221 44.000 0.00 0.00 0.00 2.01
3013 3269 4.873827 CGAGCCCTTTACTTATGCACTTTA 59.126 41.667 0.00 0.00 0.00 1.85
3014 3270 3.689649 CGAGCCCTTTACTTATGCACTTT 59.310 43.478 0.00 0.00 0.00 2.66
3015 3271 3.270877 CGAGCCCTTTACTTATGCACTT 58.729 45.455 0.00 0.00 0.00 3.16
3016 3272 2.420129 CCGAGCCCTTTACTTATGCACT 60.420 50.000 0.00 0.00 0.00 4.40
3017 3273 1.940613 CCGAGCCCTTTACTTATGCAC 59.059 52.381 0.00 0.00 0.00 4.57
3018 3274 1.134220 CCCGAGCCCTTTACTTATGCA 60.134 52.381 0.00 0.00 0.00 3.96
3019 3275 1.134189 ACCCGAGCCCTTTACTTATGC 60.134 52.381 0.00 0.00 0.00 3.14
3020 3276 4.100498 TCTTACCCGAGCCCTTTACTTATG 59.900 45.833 0.00 0.00 0.00 1.90
3021 3277 4.292643 TCTTACCCGAGCCCTTTACTTAT 58.707 43.478 0.00 0.00 0.00 1.73
3022 3278 3.703052 CTCTTACCCGAGCCCTTTACTTA 59.297 47.826 0.00 0.00 0.00 2.24
3023 3279 2.500504 CTCTTACCCGAGCCCTTTACTT 59.499 50.000 0.00 0.00 0.00 2.24
3024 3280 2.108970 CTCTTACCCGAGCCCTTTACT 58.891 52.381 0.00 0.00 0.00 2.24
3025 3281 2.105766 TCTCTTACCCGAGCCCTTTAC 58.894 52.381 0.00 0.00 0.00 2.01
3026 3282 2.537633 TCTCTTACCCGAGCCCTTTA 57.462 50.000 0.00 0.00 0.00 1.85
3027 3283 1.880941 ATCTCTTACCCGAGCCCTTT 58.119 50.000 0.00 0.00 0.00 3.11
3028 3284 2.699321 GTTATCTCTTACCCGAGCCCTT 59.301 50.000 0.00 0.00 0.00 3.95
3029 3285 2.317973 GTTATCTCTTACCCGAGCCCT 58.682 52.381 0.00 0.00 0.00 5.19
3030 3286 1.343789 GGTTATCTCTTACCCGAGCCC 59.656 57.143 0.00 0.00 0.00 5.19
3031 3287 1.000496 CGGTTATCTCTTACCCGAGCC 60.000 57.143 0.00 0.00 41.08 4.70
3032 3288 1.952296 TCGGTTATCTCTTACCCGAGC 59.048 52.381 0.00 0.00 42.33 5.03
3034 3290 2.579873 CCTCGGTTATCTCTTACCCGA 58.420 52.381 0.00 0.00 44.74 5.14
3035 3291 1.000496 GCCTCGGTTATCTCTTACCCG 60.000 57.143 0.00 0.00 39.98 5.28
3036 3292 2.037144 TGCCTCGGTTATCTCTTACCC 58.963 52.381 0.00 0.00 0.00 3.69
3037 3293 2.543238 CGTGCCTCGGTTATCTCTTACC 60.543 54.545 0.00 0.00 35.71 2.85
3038 3294 2.728922 CGTGCCTCGGTTATCTCTTAC 58.271 52.381 0.00 0.00 35.71 2.34
3039 3295 1.066605 GCGTGCCTCGGTTATCTCTTA 59.933 52.381 0.99 0.00 40.26 2.10
3040 3296 0.179108 GCGTGCCTCGGTTATCTCTT 60.179 55.000 0.99 0.00 40.26 2.85
3041 3297 1.437986 GCGTGCCTCGGTTATCTCT 59.562 57.895 0.99 0.00 40.26 3.10
3042 3298 1.944676 CGCGTGCCTCGGTTATCTC 60.945 63.158 0.00 0.00 40.26 2.75
3043 3299 2.104331 CGCGTGCCTCGGTTATCT 59.896 61.111 0.00 0.00 40.26 1.98
3044 3300 2.960129 CCGCGTGCCTCGGTTATC 60.960 66.667 4.92 0.00 41.85 1.75
3045 3301 3.426117 CTCCGCGTGCCTCGGTTAT 62.426 63.158 4.92 0.00 46.49 1.89
3046 3302 4.124351 CTCCGCGTGCCTCGGTTA 62.124 66.667 4.92 0.00 46.49 2.85
3054 3310 4.831307 ATCGTCGTCTCCGCGTGC 62.831 66.667 4.92 0.00 35.88 5.34
3055 3311 2.300597 TACATCGTCGTCTCCGCGTG 62.301 60.000 4.92 0.00 35.88 5.34
3056 3312 1.434622 ATACATCGTCGTCTCCGCGT 61.435 55.000 4.92 0.00 35.88 6.01
3057 3313 0.721811 GATACATCGTCGTCTCCGCG 60.722 60.000 0.00 0.00 35.79 6.46
3058 3314 0.385723 GGATACATCGTCGTCTCCGC 60.386 60.000 0.00 0.00 0.00 5.54
3059 3315 0.237761 GGGATACATCGTCGTCTCCG 59.762 60.000 0.00 0.00 33.92 4.63
3060 3316 0.237761 CGGGATACATCGTCGTCTCC 59.762 60.000 0.00 3.80 39.74 3.71
3061 3317 1.224075 TCGGGATACATCGTCGTCTC 58.776 55.000 0.00 0.00 39.74 3.36
3062 3318 1.602851 CTTCGGGATACATCGTCGTCT 59.397 52.381 0.00 0.00 39.74 4.18
3063 3319 1.332997 ACTTCGGGATACATCGTCGTC 59.667 52.381 0.00 0.00 39.74 4.20
3064 3320 1.386533 ACTTCGGGATACATCGTCGT 58.613 50.000 0.00 0.00 39.74 4.34
3065 3321 2.382519 GAACTTCGGGATACATCGTCG 58.617 52.381 0.00 0.00 39.74 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.