Multiple sequence alignment - TraesCS3D01G173700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G173700 chr3D 100.000 2350 0 0 1 2350 154716427 154714078 0.000000e+00 4340
1 TraesCS3D01G173700 chrUn 98.164 2287 34 4 1 2285 45100792 45098512 0.000000e+00 3984
2 TraesCS3D01G173700 chrUn 98.120 2287 38 3 1 2285 261513064 261515347 0.000000e+00 3980
3 TraesCS3D01G173700 chrUn 97.857 2287 38 5 1 2285 186163779 186161502 0.000000e+00 3941
4 TraesCS3D01G173700 chrUn 100.000 76 0 0 2275 2350 171028543 171028468 8.760000e-30 141
5 TraesCS3D01G173700 chrUn 100.000 76 0 0 2275 2350 393080783 393080858 8.760000e-30 141
6 TraesCS3D01G173700 chrUn 100.000 76 0 0 2275 2350 458305200 458305125 8.760000e-30 141
7 TraesCS3D01G173700 chr5B 98.074 2285 37 3 1 2283 130614901 130612622 0.000000e+00 3969
8 TraesCS3D01G173700 chr5B 97.989 2287 43 3 1 2285 130568755 130571040 0.000000e+00 3965
9 TraesCS3D01G173700 chr5B 97.989 2287 38 4 1 2285 130609877 130607597 0.000000e+00 3962
10 TraesCS3D01G173700 chr3A 98.032 2287 38 4 1 2285 66030313 66032594 0.000000e+00 3967
11 TraesCS3D01G173700 chr7B 97.728 2289 44 3 1 2285 743033700 743035984 0.000000e+00 3932
12 TraesCS3D01G173700 chr5A 97.726 2287 48 4 1 2285 238861455 238859171 0.000000e+00 3932
13 TraesCS3D01G173700 chr1D 100.000 76 0 0 2275 2350 141335563 141335638 8.760000e-30 141
14 TraesCS3D01G173700 chr1D 100.000 76 0 0 2275 2350 185754154 185754079 8.760000e-30 141
15 TraesCS3D01G173700 chr1B 100.000 76 0 0 2275 2350 338902685 338902760 8.760000e-30 141
16 TraesCS3D01G173700 chr1B 100.000 76 0 0 2275 2350 338959412 338959487 8.760000e-30 141
17 TraesCS3D01G173700 chr1B 100.000 76 0 0 2275 2350 583526508 583526433 8.760000e-30 141
18 TraesCS3D01G173700 chr1A 100.000 76 0 0 2275 2350 115744722 115744797 8.760000e-30 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G173700 chr3D 154714078 154716427 2349 True 4340.0 4340 100.0000 1 2350 1 chr3D.!!$R1 2349
1 TraesCS3D01G173700 chrUn 45098512 45100792 2280 True 3984.0 3984 98.1640 1 2285 1 chrUn.!!$R1 2284
2 TraesCS3D01G173700 chrUn 261513064 261515347 2283 False 3980.0 3980 98.1200 1 2285 1 chrUn.!!$F1 2284
3 TraesCS3D01G173700 chrUn 186161502 186163779 2277 True 3941.0 3941 97.8570 1 2285 1 chrUn.!!$R3 2284
4 TraesCS3D01G173700 chr5B 130607597 130614901 7304 True 3965.5 3969 98.0315 1 2285 2 chr5B.!!$R1 2284
5 TraesCS3D01G173700 chr5B 130568755 130571040 2285 False 3965.0 3965 97.9890 1 2285 1 chr5B.!!$F1 2284
6 TraesCS3D01G173700 chr3A 66030313 66032594 2281 False 3967.0 3967 98.0320 1 2285 1 chr3A.!!$F1 2284
7 TraesCS3D01G173700 chr7B 743033700 743035984 2284 False 3932.0 3932 97.7280 1 2285 1 chr7B.!!$F1 2284
8 TraesCS3D01G173700 chr5A 238859171 238861455 2284 True 3932.0 3932 97.7260 1 2285 1 chr5A.!!$R1 2284

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 486 1.028868 GTAGTAGTCCGGTCGCACCT 61.029 60.0 0.0 0.0 35.66 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1376 0.464554 GTGCTGCAACCTAGGGATCC 60.465 60.0 14.81 1.92 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 278 4.764336 TTACGCCACGCCGACTCG 62.764 66.667 0.00 0.00 0.00 4.18
332 333 1.233369 CCATAGGACCCCGTCTCCT 59.767 63.158 0.00 0.00 41.36 3.69
419 420 6.046593 CGATTGCCCTAGAATTACAACTACA 58.953 40.000 0.00 0.00 0.00 2.74
439 440 4.200874 ACATAGAGGGTCTCTACAAGTCG 58.799 47.826 6.78 0.00 44.47 4.18
485 486 1.028868 GTAGTAGTCCGGTCGCACCT 61.029 60.000 0.00 0.00 35.66 4.00
535 536 8.579850 TGCACCTAAGATCAAATATTTTGAGT 57.420 30.769 8.47 0.00 0.00 3.41
747 748 3.482923 CGAAACACATCGAAATGGTACCG 60.483 47.826 7.57 0.00 45.48 4.02
898 899 2.282887 GAAGGAAAGCCCGGCCAA 60.283 61.111 5.55 0.00 40.87 4.52
1017 1018 2.927553 GCATGAGCGAACCTTTTCAT 57.072 45.000 0.00 0.00 0.00 2.57
1146 1147 3.521560 CTTTACTATCAAGCCAGACGCA 58.478 45.455 0.00 0.00 41.38 5.24
1181 1182 4.602340 TTATCATCTACCGCCCTTTCTC 57.398 45.455 0.00 0.00 0.00 2.87
1303 1304 2.834631 GGGCAAACCAAAACCCTCT 58.165 52.632 0.00 0.00 39.42 3.69
1325 1326 4.970662 TCCAAGAAGAATTGTGCTATGC 57.029 40.909 0.00 0.00 0.00 3.14
1326 1327 3.696051 TCCAAGAAGAATTGTGCTATGCC 59.304 43.478 0.00 0.00 0.00 4.40
1327 1328 3.181483 CCAAGAAGAATTGTGCTATGCCC 60.181 47.826 0.00 0.00 0.00 5.36
1368 1376 3.130160 GCGAAAGAGCTGCCTGGG 61.130 66.667 0.00 0.00 0.00 4.45
1417 1425 0.683179 TAACTCCTCGCTAGCTGCCA 60.683 55.000 13.93 0.00 38.78 4.92
1570 1578 0.179092 GTACGATTAGCCGGCCTTGT 60.179 55.000 26.15 19.83 0.00 3.16
1571 1579 0.538118 TACGATTAGCCGGCCTTGTT 59.462 50.000 26.15 6.59 0.00 2.83
1591 1599 1.271652 TGCGGCAAAAGGATTAGGACA 60.272 47.619 0.00 0.00 0.00 4.02
1643 1651 1.968493 CCGCATTAGGTTAGGGAGCTA 59.032 52.381 0.00 0.00 37.30 3.32
1752 1761 8.246430 ACTAACGGTGGATAATCATCTTTCTA 57.754 34.615 0.00 0.00 0.00 2.10
1900 1909 4.662278 TCATTTCCTCCGTCTTCCAAATT 58.338 39.130 0.00 0.00 0.00 1.82
2128 7160 9.793259 TCTATTTGAAACTAACACTCCATTTCT 57.207 29.630 0.00 0.00 31.86 2.52
2156 7188 1.563655 GCGATCGCTCAGCAATGAG 59.436 57.895 31.94 0.83 38.86 2.90
2160 7192 0.538584 ATCGCTCAGCAATGAGACCA 59.461 50.000 9.38 0.00 38.13 4.02
2261 7296 4.966970 CGATTTCGTTTGTGTTCATGTTGA 59.033 37.500 0.00 0.00 34.11 3.18
2262 7297 5.624900 CGATTTCGTTTGTGTTCATGTTGAT 59.375 36.000 0.00 0.00 34.11 2.57
2285 7320 3.726557 TTTCAGATGTGAATGAGGCCT 57.273 42.857 3.86 3.86 42.41 5.19
2286 7321 2.704464 TCAGATGTGAATGAGGCCTG 57.296 50.000 12.00 0.00 0.00 4.85
2287 7322 2.190538 TCAGATGTGAATGAGGCCTGA 58.809 47.619 12.00 0.00 0.00 3.86
2288 7323 2.093288 TCAGATGTGAATGAGGCCTGAC 60.093 50.000 12.00 0.00 0.00 3.51
2289 7324 1.134580 AGATGTGAATGAGGCCTGACG 60.135 52.381 12.00 0.00 0.00 4.35
2290 7325 0.107508 ATGTGAATGAGGCCTGACGG 60.108 55.000 12.00 0.00 0.00 4.79
2291 7326 1.296715 GTGAATGAGGCCTGACGGT 59.703 57.895 12.00 0.00 0.00 4.83
2292 7327 0.741221 GTGAATGAGGCCTGACGGTC 60.741 60.000 12.00 0.31 34.14 4.79
2299 7334 2.693267 AGGCCTGACGGTCTTAATTC 57.307 50.000 3.11 0.00 44.81 2.17
2300 7335 1.209747 AGGCCTGACGGTCTTAATTCC 59.790 52.381 3.11 2.65 44.81 3.01
2301 7336 1.209747 GGCCTGACGGTCTTAATTCCT 59.790 52.381 9.88 0.00 30.13 3.36
2302 7337 2.433239 GGCCTGACGGTCTTAATTCCTA 59.567 50.000 9.88 0.00 30.13 2.94
2303 7338 3.118519 GGCCTGACGGTCTTAATTCCTAA 60.119 47.826 9.88 0.00 30.13 2.69
2304 7339 4.444449 GGCCTGACGGTCTTAATTCCTAAT 60.444 45.833 9.88 0.00 30.13 1.73
2305 7340 4.511826 GCCTGACGGTCTTAATTCCTAATG 59.488 45.833 9.88 0.00 0.00 1.90
2306 7341 4.511826 CCTGACGGTCTTAATTCCTAATGC 59.488 45.833 9.88 0.00 0.00 3.56
2307 7342 5.353394 TGACGGTCTTAATTCCTAATGCT 57.647 39.130 9.88 0.00 0.00 3.79
2308 7343 6.462487 CCTGACGGTCTTAATTCCTAATGCTA 60.462 42.308 9.88 0.00 0.00 3.49
2309 7344 6.278363 TGACGGTCTTAATTCCTAATGCTAC 58.722 40.000 9.88 0.00 0.00 3.58
2310 7345 6.097839 TGACGGTCTTAATTCCTAATGCTACT 59.902 38.462 9.88 0.00 0.00 2.57
2311 7346 6.514063 ACGGTCTTAATTCCTAATGCTACTC 58.486 40.000 0.00 0.00 0.00 2.59
2312 7347 5.927115 CGGTCTTAATTCCTAATGCTACTCC 59.073 44.000 0.00 0.00 0.00 3.85
2313 7348 6.239345 CGGTCTTAATTCCTAATGCTACTCCT 60.239 42.308 0.00 0.00 0.00 3.69
2314 7349 7.039923 CGGTCTTAATTCCTAATGCTACTCCTA 60.040 40.741 0.00 0.00 0.00 2.94
2315 7350 8.089597 GGTCTTAATTCCTAATGCTACTCCTAC 58.910 40.741 0.00 0.00 0.00 3.18
2316 7351 8.862085 GTCTTAATTCCTAATGCTACTCCTACT 58.138 37.037 0.00 0.00 0.00 2.57
2317 7352 8.861086 TCTTAATTCCTAATGCTACTCCTACTG 58.139 37.037 0.00 0.00 0.00 2.74
2318 7353 4.939052 TTCCTAATGCTACTCCTACTGC 57.061 45.455 0.00 0.00 0.00 4.40
2319 7354 4.186077 TCCTAATGCTACTCCTACTGCT 57.814 45.455 0.00 0.00 0.00 4.24
2320 7355 5.320488 TCCTAATGCTACTCCTACTGCTA 57.680 43.478 0.00 0.00 0.00 3.49
2321 7356 5.893500 TCCTAATGCTACTCCTACTGCTAT 58.106 41.667 0.00 0.00 0.00 2.97
2322 7357 6.315714 TCCTAATGCTACTCCTACTGCTATT 58.684 40.000 0.00 0.00 0.00 1.73
2323 7358 6.209589 TCCTAATGCTACTCCTACTGCTATTG 59.790 42.308 0.00 0.00 0.00 1.90
2324 7359 3.735237 TGCTACTCCTACTGCTATTGC 57.265 47.619 0.00 0.00 40.20 3.56
2325 7360 3.300388 TGCTACTCCTACTGCTATTGCT 58.700 45.455 0.00 0.00 40.48 3.91
2326 7361 4.470602 TGCTACTCCTACTGCTATTGCTA 58.529 43.478 0.00 0.00 40.48 3.49
2327 7362 5.080337 TGCTACTCCTACTGCTATTGCTAT 58.920 41.667 0.00 0.00 40.48 2.97
2328 7363 5.540337 TGCTACTCCTACTGCTATTGCTATT 59.460 40.000 0.00 0.00 40.48 1.73
2329 7364 5.866633 GCTACTCCTACTGCTATTGCTATTG 59.133 44.000 0.00 0.00 40.48 1.90
2330 7365 5.878406 ACTCCTACTGCTATTGCTATTGT 57.122 39.130 0.00 0.00 40.48 2.71
2331 7366 6.240549 ACTCCTACTGCTATTGCTATTGTT 57.759 37.500 0.00 0.00 40.48 2.83
2332 7367 7.361457 ACTCCTACTGCTATTGCTATTGTTA 57.639 36.000 0.00 0.00 40.48 2.41
2333 7368 7.210873 ACTCCTACTGCTATTGCTATTGTTAC 58.789 38.462 0.00 0.00 40.48 2.50
2334 7369 7.070074 ACTCCTACTGCTATTGCTATTGTTACT 59.930 37.037 0.00 0.00 40.48 2.24
2335 7370 7.210174 TCCTACTGCTATTGCTATTGTTACTG 58.790 38.462 0.00 0.00 40.48 2.74
2336 7371 5.741388 ACTGCTATTGCTATTGTTACTGC 57.259 39.130 0.00 0.00 40.48 4.40
2337 7372 5.431765 ACTGCTATTGCTATTGTTACTGCT 58.568 37.500 0.00 0.00 40.48 4.24
2338 7373 5.882557 ACTGCTATTGCTATTGTTACTGCTT 59.117 36.000 0.00 0.00 40.48 3.91
2339 7374 6.375455 ACTGCTATTGCTATTGTTACTGCTTT 59.625 34.615 0.00 0.00 40.48 3.51
2340 7375 7.094205 ACTGCTATTGCTATTGTTACTGCTTTT 60.094 33.333 0.00 0.00 40.48 2.27
2341 7376 7.028962 TGCTATTGCTATTGTTACTGCTTTTG 58.971 34.615 0.00 0.00 40.48 2.44
2342 7377 6.473455 GCTATTGCTATTGTTACTGCTTTTGG 59.527 38.462 0.00 0.00 36.03 3.28
2343 7378 4.782019 TGCTATTGTTACTGCTTTTGGG 57.218 40.909 0.00 0.00 0.00 4.12
2344 7379 4.402829 TGCTATTGTTACTGCTTTTGGGA 58.597 39.130 0.00 0.00 0.00 4.37
2345 7380 4.830046 TGCTATTGTTACTGCTTTTGGGAA 59.170 37.500 0.00 0.00 0.00 3.97
2346 7381 5.480073 TGCTATTGTTACTGCTTTTGGGAAT 59.520 36.000 0.00 0.00 0.00 3.01
2347 7382 6.014669 TGCTATTGTTACTGCTTTTGGGAATT 60.015 34.615 0.00 0.00 0.00 2.17
2348 7383 6.311200 GCTATTGTTACTGCTTTTGGGAATTG 59.689 38.462 0.00 0.00 0.00 2.32
2349 7384 4.599047 TGTTACTGCTTTTGGGAATTGG 57.401 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 278 0.108520 TGGTCTAATTCCACGACGGC 60.109 55.000 0.00 0.00 33.14 5.68
332 333 3.074504 ACGCGCGAAAGATAAGATACA 57.925 42.857 39.36 0.00 0.00 2.29
419 420 4.774660 TCGACTTGTAGAGACCCTCTAT 57.225 45.455 6.94 0.00 43.69 1.98
747 748 8.718734 CAAATCCTTCTATTATTAAGTACGGCC 58.281 37.037 0.00 0.00 0.00 6.13
814 815 8.502738 TCTCCTAACTATTGCCCATTTATTCTT 58.497 33.333 0.00 0.00 0.00 2.52
898 899 1.135228 GGAAACTTGCACGTGTGGTTT 60.135 47.619 24.10 24.10 33.60 3.27
1017 1018 1.407712 GCGCCCATTCCTAACCAGTTA 60.408 52.381 0.00 0.00 0.00 2.24
1181 1182 1.893786 CGTGAAGGGACAGGAGGAG 59.106 63.158 0.00 0.00 0.00 3.69
1303 1304 4.158394 GGCATAGCACAATTCTTCTTGGAA 59.842 41.667 0.00 0.00 0.00 3.53
1368 1376 0.464554 GTGCTGCAACCTAGGGATCC 60.465 60.000 14.81 1.92 0.00 3.36
1417 1425 1.589716 CGGTCGGTCCTAGAAACGGT 61.590 60.000 0.00 0.00 0.00 4.83
1570 1578 1.816224 GTCCTAATCCTTTTGCCGCAA 59.184 47.619 0.38 0.38 0.00 4.85
1571 1579 1.271652 TGTCCTAATCCTTTTGCCGCA 60.272 47.619 0.00 0.00 0.00 5.69
1643 1651 1.178276 CGGAGGAGCTATTATCGCCT 58.822 55.000 0.00 0.00 36.43 5.52
1689 1698 3.435671 GCTTGGATTACTTAGTGTTGCGT 59.564 43.478 0.00 0.00 0.00 5.24
1752 1761 8.375493 TCATGGAGTTGTATTTAGTACCTCTT 57.625 34.615 0.00 0.00 32.03 2.85
1900 1909 5.415701 CCTAGGCTTTTGAATTAACTCTGCA 59.584 40.000 0.00 0.00 0.00 4.41
2156 7188 2.981560 TACTTCGTCCGGCGTGGTC 61.982 63.158 16.00 0.00 42.13 4.02
2160 7192 0.749454 ATAGGTACTTCGTCCGGCGT 60.749 55.000 16.00 2.47 41.75 5.68
2261 7296 4.583489 GGCCTCATTCACATCTGAAATCAT 59.417 41.667 0.00 0.00 39.90 2.45
2262 7297 3.949754 GGCCTCATTCACATCTGAAATCA 59.050 43.478 0.00 0.00 39.90 2.57
2285 7320 5.353394 AGCATTAGGAATTAAGACCGTCA 57.647 39.130 0.40 0.00 0.00 4.35
2286 7321 6.514063 AGTAGCATTAGGAATTAAGACCGTC 58.486 40.000 0.00 0.00 0.00 4.79
2287 7322 6.462628 GGAGTAGCATTAGGAATTAAGACCGT 60.463 42.308 0.00 0.00 0.00 4.83
2288 7323 5.927115 GGAGTAGCATTAGGAATTAAGACCG 59.073 44.000 0.00 0.00 0.00 4.79
2289 7324 7.068686 AGGAGTAGCATTAGGAATTAAGACC 57.931 40.000 0.00 0.00 0.00 3.85
2290 7325 8.862085 AGTAGGAGTAGCATTAGGAATTAAGAC 58.138 37.037 0.00 0.00 0.00 3.01
2291 7326 8.861086 CAGTAGGAGTAGCATTAGGAATTAAGA 58.139 37.037 0.00 0.00 0.00 2.10
2292 7327 7.600752 GCAGTAGGAGTAGCATTAGGAATTAAG 59.399 40.741 0.00 0.00 0.00 1.85
2293 7328 7.290248 AGCAGTAGGAGTAGCATTAGGAATTAA 59.710 37.037 0.00 0.00 0.00 1.40
2294 7329 6.782988 AGCAGTAGGAGTAGCATTAGGAATTA 59.217 38.462 0.00 0.00 0.00 1.40
2295 7330 5.604650 AGCAGTAGGAGTAGCATTAGGAATT 59.395 40.000 0.00 0.00 0.00 2.17
2296 7331 5.151454 AGCAGTAGGAGTAGCATTAGGAAT 58.849 41.667 0.00 0.00 0.00 3.01
2297 7332 4.547671 AGCAGTAGGAGTAGCATTAGGAA 58.452 43.478 0.00 0.00 0.00 3.36
2298 7333 4.186077 AGCAGTAGGAGTAGCATTAGGA 57.814 45.455 0.00 0.00 0.00 2.94
2299 7334 6.393990 CAATAGCAGTAGGAGTAGCATTAGG 58.606 44.000 0.00 0.00 0.00 2.69
2300 7335 5.866633 GCAATAGCAGTAGGAGTAGCATTAG 59.133 44.000 0.00 0.00 41.58 1.73
2301 7336 5.540337 AGCAATAGCAGTAGGAGTAGCATTA 59.460 40.000 0.00 0.00 45.49 1.90
2302 7337 4.346418 AGCAATAGCAGTAGGAGTAGCATT 59.654 41.667 0.00 0.00 45.49 3.56
2303 7338 3.900601 AGCAATAGCAGTAGGAGTAGCAT 59.099 43.478 0.00 0.00 45.49 3.79
2304 7339 3.300388 AGCAATAGCAGTAGGAGTAGCA 58.700 45.455 0.00 0.00 45.49 3.49
2305 7340 5.652994 ATAGCAATAGCAGTAGGAGTAGC 57.347 43.478 0.00 0.00 45.49 3.58
2306 7341 6.987386 ACAATAGCAATAGCAGTAGGAGTAG 58.013 40.000 0.00 0.00 45.49 2.57
2307 7342 6.978674 ACAATAGCAATAGCAGTAGGAGTA 57.021 37.500 0.00 0.00 45.49 2.59
2308 7343 5.878406 ACAATAGCAATAGCAGTAGGAGT 57.122 39.130 0.00 0.00 45.49 3.85
2309 7344 7.383572 CAGTAACAATAGCAATAGCAGTAGGAG 59.616 40.741 0.00 0.00 45.49 3.69
2310 7345 7.210174 CAGTAACAATAGCAATAGCAGTAGGA 58.790 38.462 0.00 0.00 45.49 2.94
2311 7346 6.073548 GCAGTAACAATAGCAATAGCAGTAGG 60.074 42.308 0.00 0.00 45.49 3.18
2312 7347 6.703607 AGCAGTAACAATAGCAATAGCAGTAG 59.296 38.462 0.00 0.00 45.49 2.57
2313 7348 6.582636 AGCAGTAACAATAGCAATAGCAGTA 58.417 36.000 0.00 0.00 45.49 2.74
2314 7349 5.431765 AGCAGTAACAATAGCAATAGCAGT 58.568 37.500 0.00 0.00 45.49 4.40
2315 7350 5.998454 AGCAGTAACAATAGCAATAGCAG 57.002 39.130 0.00 0.00 45.49 4.24
2316 7351 6.757897 AAAGCAGTAACAATAGCAATAGCA 57.242 33.333 0.00 0.00 45.49 3.49
2317 7352 6.473455 CCAAAAGCAGTAACAATAGCAATAGC 59.527 38.462 0.00 0.00 42.56 2.97
2318 7353 6.974622 CCCAAAAGCAGTAACAATAGCAATAG 59.025 38.462 0.00 0.00 0.00 1.73
2319 7354 6.661377 TCCCAAAAGCAGTAACAATAGCAATA 59.339 34.615 0.00 0.00 0.00 1.90
2320 7355 5.480073 TCCCAAAAGCAGTAACAATAGCAAT 59.520 36.000 0.00 0.00 0.00 3.56
2321 7356 4.830046 TCCCAAAAGCAGTAACAATAGCAA 59.170 37.500 0.00 0.00 0.00 3.91
2322 7357 4.402829 TCCCAAAAGCAGTAACAATAGCA 58.597 39.130 0.00 0.00 0.00 3.49
2323 7358 5.385509 TTCCCAAAAGCAGTAACAATAGC 57.614 39.130 0.00 0.00 0.00 2.97
2324 7359 6.813152 CCAATTCCCAAAAGCAGTAACAATAG 59.187 38.462 0.00 0.00 0.00 1.73
2325 7360 6.696411 CCAATTCCCAAAAGCAGTAACAATA 58.304 36.000 0.00 0.00 0.00 1.90
2326 7361 5.550290 CCAATTCCCAAAAGCAGTAACAAT 58.450 37.500 0.00 0.00 0.00 2.71
2327 7362 4.954875 CCAATTCCCAAAAGCAGTAACAA 58.045 39.130 0.00 0.00 0.00 2.83
2328 7363 4.599047 CCAATTCCCAAAAGCAGTAACA 57.401 40.909 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.