Multiple sequence alignment - TraesCS3D01G173400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G173400 chr3D 100.000 2642 0 0 1 2642 154611444 154614085 0.000000e+00 4879.0
1 TraesCS3D01G173400 chr3D 85.475 358 42 5 48 400 109265962 109265610 5.370000e-97 364.0
2 TraesCS3D01G173400 chr3D 85.542 83 11 1 1897 1978 170547024 170546942 4.690000e-13 86.1
3 TraesCS3D01G173400 chr3D 94.545 55 3 0 1917 1971 365921945 365921891 4.690000e-13 86.1
4 TraesCS3D01G173400 chr3A 95.782 1375 38 9 555 1920 173941871 173943234 0.000000e+00 2200.0
5 TraesCS3D01G173400 chr3A 93.085 752 26 10 1916 2642 173943261 173944011 0.000000e+00 1077.0
6 TraesCS3D01G173400 chr3A 92.982 57 2 2 1916 1971 549622849 549622794 6.060000e-12 82.4
7 TraesCS3D01G173400 chr3A 84.337 83 12 1 1897 1978 208074088 208074006 2.180000e-11 80.5
8 TraesCS3D01G173400 chr3A 84.211 76 11 1 1897 1971 83981236 83981311 3.650000e-09 73.1
9 TraesCS3D01G173400 chr3B 95.890 949 26 2 776 1724 226484594 226483659 0.000000e+00 1524.0
10 TraesCS3D01G173400 chr3B 91.983 686 46 5 1966 2642 226483517 226482832 0.000000e+00 953.0
11 TraesCS3D01G173400 chr3B 91.968 249 12 5 535 782 226484864 226484623 2.520000e-90 342.0
12 TraesCS3D01G173400 chr3B 82.558 86 10 3 420 501 602478473 602478389 1.310000e-08 71.3
13 TraesCS3D01G173400 chr6D 87.033 455 52 6 47 498 123782258 123782708 8.440000e-140 507.0
14 TraesCS3D01G173400 chr6D 87.305 449 48 7 57 501 269899158 269899601 3.030000e-139 505.0
15 TraesCS3D01G173400 chr6D 85.526 456 59 5 47 498 163345677 163345225 1.110000e-128 470.0
16 TraesCS3D01G173400 chr6D 83.883 273 34 7 47 315 3562483 3562749 4.370000e-63 252.0
17 TraesCS3D01G173400 chr6D 95.652 46 2 0 2411 2456 229431474 229431519 1.010000e-09 75.0
18 TraesCS3D01G173400 chr2A 84.649 456 62 5 47 498 733536156 733536607 5.190000e-122 448.0
19 TraesCS3D01G173400 chr4A 84.245 457 59 11 47 499 311242103 311242550 1.450000e-117 433.0
20 TraesCS3D01G173400 chr4A 98.000 50 1 0 449 498 727714394 727714345 1.300000e-13 87.9
21 TraesCS3D01G173400 chr4A 94.118 51 3 0 2406 2456 618286373 618286323 7.840000e-11 78.7
22 TraesCS3D01G173400 chr4A 93.878 49 2 1 2408 2456 548788800 548788847 3.650000e-09 73.1
23 TraesCS3D01G173400 chr1D 83.117 462 54 12 47 501 359482361 359481917 1.470000e-107 399.0
24 TraesCS3D01G173400 chr5D 86.835 357 38 7 47 400 482169663 482170013 8.870000e-105 390.0
25 TraesCS3D01G173400 chr7D 81.266 395 48 16 1 392 583547143 583547514 1.990000e-76 296.0
26 TraesCS3D01G173400 chr6A 92.727 55 4 0 1917 1971 430338810 430338756 2.180000e-11 80.5
27 TraesCS3D01G173400 chr4D 94.231 52 3 0 2406 2457 85258432 85258483 2.180000e-11 80.5
28 TraesCS3D01G173400 chr4D 91.071 56 4 1 2402 2457 85165934 85165880 1.010000e-09 75.0
29 TraesCS3D01G173400 chr4D 90.196 51 5 0 1931 1981 488746121 488746071 1.700000e-07 67.6
30 TraesCS3D01G173400 chr7B 85.526 76 10 1 1897 1971 505937389 505937314 7.840000e-11 78.7
31 TraesCS3D01G173400 chr7B 79.167 96 12 6 2411 2500 227279849 227279942 2.840000e-05 60.2
32 TraesCS3D01G173400 chr1A 92.727 55 3 1 2402 2456 61012509 61012562 7.840000e-11 78.7
33 TraesCS3D01G173400 chr5B 90.196 51 5 0 448 498 480287181 480287231 1.700000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G173400 chr3D 154611444 154614085 2641 False 4879.000000 4879 100.000000 1 2642 1 chr3D.!!$F1 2641
1 TraesCS3D01G173400 chr3A 173941871 173944011 2140 False 1638.500000 2200 94.433500 555 2642 2 chr3A.!!$F2 2087
2 TraesCS3D01G173400 chr3B 226482832 226484864 2032 True 939.666667 1524 93.280333 535 2642 3 chr3B.!!$R2 2107

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 765 0.0293 CCACCTCGCACAACAAACAG 59.971 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 2445 1.002366 GTTGCGACATCTTCAGCGAT 58.998 50.0 0.0 0.0 0.0 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.821894 TCTAAATGTTTTCAATTTTTGTTCGGG 58.178 29.630 0.00 0.00 0.00 5.14
42 43 7.617041 AAATGTTTTCAATTTTTGTTCGGGA 57.383 28.000 0.00 0.00 0.00 5.14
43 44 6.843069 ATGTTTTCAATTTTTGTTCGGGAG 57.157 33.333 0.00 0.00 0.00 4.30
44 45 5.725362 TGTTTTCAATTTTTGTTCGGGAGT 58.275 33.333 0.00 0.00 0.00 3.85
45 46 6.166982 TGTTTTCAATTTTTGTTCGGGAGTT 58.833 32.000 0.00 0.00 0.00 3.01
46 47 6.651225 TGTTTTCAATTTTTGTTCGGGAGTTT 59.349 30.769 0.00 0.00 0.00 2.66
47 48 7.817962 TGTTTTCAATTTTTGTTCGGGAGTTTA 59.182 29.630 0.00 0.00 0.00 2.01
48 49 8.657729 GTTTTCAATTTTTGTTCGGGAGTTTAA 58.342 29.630 0.00 0.00 0.00 1.52
49 50 8.950208 TTTCAATTTTTGTTCGGGAGTTTAAT 57.050 26.923 0.00 0.00 0.00 1.40
50 51 8.950208 TTCAATTTTTGTTCGGGAGTTTAATT 57.050 26.923 0.00 0.00 0.00 1.40
51 52 8.950208 TCAATTTTTGTTCGGGAGTTTAATTT 57.050 26.923 0.00 0.00 0.00 1.82
52 53 9.384764 TCAATTTTTGTTCGGGAGTTTAATTTT 57.615 25.926 0.00 0.00 0.00 1.82
53 54 9.995957 CAATTTTTGTTCGGGAGTTTAATTTTT 57.004 25.926 0.00 0.00 0.00 1.94
77 78 7.608308 TTCACCTTTTGAAATTTTGTTCTGG 57.392 32.000 0.00 0.00 41.51 3.86
78 79 6.940739 TCACCTTTTGAAATTTTGTTCTGGA 58.059 32.000 0.00 0.00 0.00 3.86
79 80 7.390027 TCACCTTTTGAAATTTTGTTCTGGAA 58.610 30.769 0.00 0.00 0.00 3.53
80 81 8.046107 TCACCTTTTGAAATTTTGTTCTGGAAT 58.954 29.630 0.00 0.00 0.00 3.01
81 82 8.676401 CACCTTTTGAAATTTTGTTCTGGAATT 58.324 29.630 0.00 0.00 0.00 2.17
82 83 9.898152 ACCTTTTGAAATTTTGTTCTGGAATTA 57.102 25.926 0.00 0.00 0.00 1.40
94 95 8.669946 TTGTTCTGGAATTACAAAAATTTCCC 57.330 30.769 0.00 0.00 0.00 3.97
95 96 7.220740 TGTTCTGGAATTACAAAAATTTCCCC 58.779 34.615 0.00 0.00 0.00 4.81
96 97 6.031751 TCTGGAATTACAAAAATTTCCCCG 57.968 37.500 0.00 0.00 0.00 5.73
97 98 5.540719 TCTGGAATTACAAAAATTTCCCCGT 59.459 36.000 0.00 0.00 0.00 5.28
98 99 6.720288 TCTGGAATTACAAAAATTTCCCCGTA 59.280 34.615 0.00 0.00 0.00 4.02
99 100 7.397761 TCTGGAATTACAAAAATTTCCCCGTAT 59.602 33.333 0.00 0.00 0.00 3.06
100 101 7.548967 TGGAATTACAAAAATTTCCCCGTATC 58.451 34.615 0.00 0.00 0.00 2.24
101 102 7.178628 TGGAATTACAAAAATTTCCCCGTATCA 59.821 33.333 0.00 0.00 0.00 2.15
102 103 8.035984 GGAATTACAAAAATTTCCCCGTATCAA 58.964 33.333 0.00 0.00 0.00 2.57
103 104 9.425577 GAATTACAAAAATTTCCCCGTATCAAA 57.574 29.630 0.00 0.00 0.00 2.69
104 105 9.780186 AATTACAAAAATTTCCCCGTATCAAAA 57.220 25.926 0.00 0.00 0.00 2.44
105 106 9.780186 ATTACAAAAATTTCCCCGTATCAAAAA 57.220 25.926 0.00 0.00 0.00 1.94
130 131 9.866936 AAATTGTTCATGATTTTCGAAAATGTG 57.133 25.926 34.35 29.08 38.64 3.21
131 132 7.405469 TTGTTCATGATTTTCGAAAATGTGG 57.595 32.000 34.35 23.11 38.64 4.17
132 133 5.404968 TGTTCATGATTTTCGAAAATGTGGC 59.595 36.000 34.35 24.91 38.64 5.01
133 134 5.131594 TCATGATTTTCGAAAATGTGGCA 57.868 34.783 34.35 26.02 38.64 4.92
134 135 5.162794 TCATGATTTTCGAAAATGTGGCAG 58.837 37.500 34.35 19.76 38.64 4.85
135 136 4.582701 TGATTTTCGAAAATGTGGCAGT 57.417 36.364 34.35 13.90 38.64 4.40
136 137 4.942852 TGATTTTCGAAAATGTGGCAGTT 58.057 34.783 34.35 13.21 38.64 3.16
137 138 5.355596 TGATTTTCGAAAATGTGGCAGTTT 58.644 33.333 34.35 12.52 38.64 2.66
138 139 5.814705 TGATTTTCGAAAATGTGGCAGTTTT 59.185 32.000 34.35 12.03 38.64 2.43
139 140 6.314896 TGATTTTCGAAAATGTGGCAGTTTTT 59.685 30.769 34.35 11.83 38.64 1.94
140 141 7.492669 TGATTTTCGAAAATGTGGCAGTTTTTA 59.507 29.630 34.35 6.81 38.64 1.52
141 142 7.596749 TTTTCGAAAATGTGGCAGTTTTTAA 57.403 28.000 19.08 7.09 31.79 1.52
142 143 7.778470 TTTCGAAAATGTGGCAGTTTTTAAT 57.222 28.000 8.44 0.00 31.79 1.40
143 144 8.873215 TTTCGAAAATGTGGCAGTTTTTAATA 57.127 26.923 8.44 0.00 31.79 0.98
144 145 8.873215 TTCGAAAATGTGGCAGTTTTTAATAA 57.127 26.923 10.69 3.42 31.79 1.40
145 146 8.873215 TCGAAAATGTGGCAGTTTTTAATAAA 57.127 26.923 10.69 0.00 31.79 1.40
146 147 9.314321 TCGAAAATGTGGCAGTTTTTAATAAAA 57.686 25.926 10.69 0.00 31.79 1.52
153 154 9.383519 TGTGGCAGTTTTTAATAAAATTGTTCA 57.616 25.926 0.00 3.17 40.84 3.18
154 155 9.644993 GTGGCAGTTTTTAATAAAATTGTTCAC 57.355 29.630 0.00 9.61 40.84 3.18
155 156 8.543774 TGGCAGTTTTTAATAAAATTGTTCACG 58.456 29.630 0.00 0.00 40.84 4.35
156 157 8.007152 GGCAGTTTTTAATAAAATTGTTCACGG 58.993 33.333 0.00 0.00 40.84 4.94
157 158 8.544597 GCAGTTTTTAATAAAATTGTTCACGGT 58.455 29.630 0.00 0.00 40.84 4.83
167 168 9.974980 ATAAAATTGTTCACGGTATTCAAAAGT 57.025 25.926 0.00 0.00 0.00 2.66
169 170 9.458374 AAAATTGTTCACGGTATTCAAAAGTAG 57.542 29.630 0.00 0.00 0.00 2.57
170 171 7.739498 ATTGTTCACGGTATTCAAAAGTAGT 57.261 32.000 0.00 0.00 0.00 2.73
171 172 7.556733 TTGTTCACGGTATTCAAAAGTAGTT 57.443 32.000 0.00 0.00 0.00 2.24
172 173 6.950545 TGTTCACGGTATTCAAAAGTAGTTG 58.049 36.000 0.00 0.00 0.00 3.16
173 174 5.600908 TCACGGTATTCAAAAGTAGTTGC 57.399 39.130 0.00 0.00 0.00 4.17
174 175 4.150980 TCACGGTATTCAAAAGTAGTTGCG 59.849 41.667 0.00 0.00 0.00 4.85
175 176 4.060205 ACGGTATTCAAAAGTAGTTGCGT 58.940 39.130 0.00 0.00 0.00 5.24
176 177 4.512571 ACGGTATTCAAAAGTAGTTGCGTT 59.487 37.500 0.00 0.00 0.00 4.84
177 178 5.007921 ACGGTATTCAAAAGTAGTTGCGTTT 59.992 36.000 0.00 0.00 0.00 3.60
178 179 5.562623 CGGTATTCAAAAGTAGTTGCGTTTC 59.437 40.000 0.00 0.00 0.00 2.78
179 180 6.432107 GGTATTCAAAAGTAGTTGCGTTTCA 58.568 36.000 0.00 0.00 0.00 2.69
180 181 6.358822 GGTATTCAAAAGTAGTTGCGTTTCAC 59.641 38.462 0.00 0.00 0.00 3.18
181 182 4.948608 TCAAAAGTAGTTGCGTTTCACA 57.051 36.364 0.00 0.00 0.00 3.58
182 183 5.298197 TCAAAAGTAGTTGCGTTTCACAA 57.702 34.783 0.00 0.00 0.00 3.33
183 184 5.700846 TCAAAAGTAGTTGCGTTTCACAAA 58.299 33.333 0.00 0.00 0.00 2.83
184 185 6.150318 TCAAAAGTAGTTGCGTTTCACAAAA 58.850 32.000 0.00 0.00 0.00 2.44
185 186 6.088350 TCAAAAGTAGTTGCGTTTCACAAAAC 59.912 34.615 0.00 0.00 41.16 2.43
186 187 4.688511 AGTAGTTGCGTTTCACAAAACA 57.311 36.364 2.38 0.00 44.13 2.83
187 188 5.243426 AGTAGTTGCGTTTCACAAAACAT 57.757 34.783 2.38 0.00 44.13 2.71
188 189 5.270853 AGTAGTTGCGTTTCACAAAACATC 58.729 37.500 2.38 0.00 44.13 3.06
189 190 3.443976 AGTTGCGTTTCACAAAACATCC 58.556 40.909 2.38 0.00 44.13 3.51
190 191 2.112475 TGCGTTTCACAAAACATCCG 57.888 45.000 2.38 0.00 44.13 4.18
191 192 1.268794 TGCGTTTCACAAAACATCCGG 60.269 47.619 0.00 0.00 44.13 5.14
192 193 1.928595 GCGTTTCACAAAACATCCGGG 60.929 52.381 0.00 0.00 44.13 5.73
193 194 1.335496 CGTTTCACAAAACATCCGGGT 59.665 47.619 0.00 0.00 44.13 5.28
194 195 2.223618 CGTTTCACAAAACATCCGGGTT 60.224 45.455 0.00 0.00 44.13 4.11
195 196 3.120041 GTTTCACAAAACATCCGGGTTG 58.880 45.455 0.00 2.16 43.52 3.77
196 197 2.060050 TCACAAAACATCCGGGTTGT 57.940 45.000 0.00 4.90 34.60 3.32
197 198 2.379972 TCACAAAACATCCGGGTTGTT 58.620 42.857 15.96 15.96 38.91 2.83
198 199 2.761208 TCACAAAACATCCGGGTTGTTT 59.239 40.909 23.91 23.91 46.38 2.83
222 223 8.560576 TTTTTGTTTTGAAAAATGCGTTTGAA 57.439 23.077 4.29 0.00 31.39 2.69
223 224 8.560576 TTTTGTTTTGAAAAATGCGTTTGAAA 57.439 23.077 4.29 2.46 0.00 2.69
224 225 8.733857 TTTGTTTTGAAAAATGCGTTTGAAAT 57.266 23.077 4.29 0.00 0.00 2.17
225 226 8.733857 TTGTTTTGAAAAATGCGTTTGAAATT 57.266 23.077 4.29 0.00 0.00 1.82
226 227 8.733857 TGTTTTGAAAAATGCGTTTGAAATTT 57.266 23.077 4.29 0.00 0.00 1.82
227 228 8.844690 TGTTTTGAAAAATGCGTTTGAAATTTC 58.155 25.926 11.41 11.41 0.00 2.17
228 229 8.844690 GTTTTGAAAAATGCGTTTGAAATTTCA 58.155 25.926 16.91 16.91 34.92 2.69
229 230 8.955061 TTTGAAAAATGCGTTTGAAATTTCAA 57.045 23.077 26.01 26.01 44.78 2.69
250 251 1.656652 AAAATCGGATCTGTGCTCGG 58.343 50.000 0.42 0.00 0.00 4.63
251 252 0.537188 AAATCGGATCTGTGCTCGGT 59.463 50.000 0.42 0.00 0.00 4.69
252 253 1.399714 AATCGGATCTGTGCTCGGTA 58.600 50.000 0.42 0.00 0.00 4.02
253 254 0.955178 ATCGGATCTGTGCTCGGTAG 59.045 55.000 0.42 0.00 0.00 3.18
254 255 0.393944 TCGGATCTGTGCTCGGTAGT 60.394 55.000 0.42 0.00 0.00 2.73
255 256 0.456221 CGGATCTGTGCTCGGTAGTT 59.544 55.000 0.00 0.00 0.00 2.24
256 257 1.135083 CGGATCTGTGCTCGGTAGTTT 60.135 52.381 0.00 0.00 0.00 2.66
257 258 2.271800 GGATCTGTGCTCGGTAGTTTG 58.728 52.381 0.00 0.00 0.00 2.93
258 259 2.353803 GGATCTGTGCTCGGTAGTTTGT 60.354 50.000 0.00 0.00 0.00 2.83
259 260 2.148916 TCTGTGCTCGGTAGTTTGTG 57.851 50.000 0.00 0.00 0.00 3.33
260 261 0.512952 CTGTGCTCGGTAGTTTGTGC 59.487 55.000 0.00 0.00 0.00 4.57
261 262 0.105964 TGTGCTCGGTAGTTTGTGCT 59.894 50.000 0.00 0.00 0.00 4.40
262 263 1.226746 GTGCTCGGTAGTTTGTGCTT 58.773 50.000 0.00 0.00 0.00 3.91
263 264 2.224090 TGTGCTCGGTAGTTTGTGCTTA 60.224 45.455 0.00 0.00 0.00 3.09
264 265 2.803956 GTGCTCGGTAGTTTGTGCTTAA 59.196 45.455 0.00 0.00 0.00 1.85
265 266 3.249080 GTGCTCGGTAGTTTGTGCTTAAA 59.751 43.478 0.00 0.00 0.00 1.52
266 267 3.496884 TGCTCGGTAGTTTGTGCTTAAAG 59.503 43.478 0.00 0.00 0.00 1.85
267 268 3.120304 GCTCGGTAGTTTGTGCTTAAAGG 60.120 47.826 0.00 0.00 0.00 3.11
268 269 4.062991 CTCGGTAGTTTGTGCTTAAAGGT 58.937 43.478 0.00 0.00 0.00 3.50
269 270 4.453751 TCGGTAGTTTGTGCTTAAAGGTT 58.546 39.130 0.00 0.00 0.00 3.50
270 271 4.883006 TCGGTAGTTTGTGCTTAAAGGTTT 59.117 37.500 0.00 0.00 0.00 3.27
271 272 4.973663 CGGTAGTTTGTGCTTAAAGGTTTG 59.026 41.667 0.00 0.00 0.00 2.93
272 273 4.743151 GGTAGTTTGTGCTTAAAGGTTTGC 59.257 41.667 0.00 0.00 0.00 3.68
273 274 3.443976 AGTTTGTGCTTAAAGGTTTGCG 58.556 40.909 0.00 0.00 0.00 4.85
274 275 1.846541 TTGTGCTTAAAGGTTTGCGC 58.153 45.000 0.00 0.00 36.59 6.09
275 276 1.028905 TGTGCTTAAAGGTTTGCGCT 58.971 45.000 9.73 0.00 36.93 5.92
276 277 1.268999 TGTGCTTAAAGGTTTGCGCTG 60.269 47.619 9.73 0.00 36.93 5.18
277 278 1.028905 TGCTTAAAGGTTTGCGCTGT 58.971 45.000 9.73 0.00 0.00 4.40
278 279 1.268999 TGCTTAAAGGTTTGCGCTGTG 60.269 47.619 9.73 0.00 0.00 3.66
279 280 1.269051 GCTTAAAGGTTTGCGCTGTGT 60.269 47.619 9.73 0.00 0.00 3.72
280 281 2.798145 GCTTAAAGGTTTGCGCTGTGTT 60.798 45.455 9.73 0.00 0.00 3.32
281 282 2.483583 TAAAGGTTTGCGCTGTGTTG 57.516 45.000 9.73 0.00 0.00 3.33
282 283 0.530288 AAAGGTTTGCGCTGTGTTGT 59.470 45.000 9.73 0.00 0.00 3.32
283 284 0.179140 AAGGTTTGCGCTGTGTTGTG 60.179 50.000 9.73 0.00 0.00 3.33
284 285 1.029408 AGGTTTGCGCTGTGTTGTGA 61.029 50.000 9.73 0.00 0.00 3.58
285 286 0.592247 GGTTTGCGCTGTGTTGTGAG 60.592 55.000 9.73 0.00 0.00 3.51
286 287 0.098728 GTTTGCGCTGTGTTGTGAGT 59.901 50.000 9.73 0.00 0.00 3.41
287 288 1.329292 GTTTGCGCTGTGTTGTGAGTA 59.671 47.619 9.73 0.00 0.00 2.59
288 289 1.877637 TTGCGCTGTGTTGTGAGTAT 58.122 45.000 9.73 0.00 0.00 2.12
289 290 1.877637 TGCGCTGTGTTGTGAGTATT 58.122 45.000 9.73 0.00 0.00 1.89
290 291 3.033368 TGCGCTGTGTTGTGAGTATTA 57.967 42.857 9.73 0.00 0.00 0.98
291 292 3.394719 TGCGCTGTGTTGTGAGTATTAA 58.605 40.909 9.73 0.00 0.00 1.40
292 293 3.810386 TGCGCTGTGTTGTGAGTATTAAA 59.190 39.130 9.73 0.00 0.00 1.52
293 294 4.084066 TGCGCTGTGTTGTGAGTATTAAAG 60.084 41.667 9.73 0.00 0.00 1.85
294 295 4.394795 CGCTGTGTTGTGAGTATTAAAGC 58.605 43.478 0.00 0.00 0.00 3.51
295 296 4.152402 CGCTGTGTTGTGAGTATTAAAGCT 59.848 41.667 0.00 0.00 0.00 3.74
296 297 5.334105 CGCTGTGTTGTGAGTATTAAAGCTT 60.334 40.000 0.00 0.00 0.00 3.74
297 298 5.853282 GCTGTGTTGTGAGTATTAAAGCTTG 59.147 40.000 0.00 0.00 0.00 4.01
298 299 5.757886 TGTGTTGTGAGTATTAAAGCTTGC 58.242 37.500 0.00 0.00 0.00 4.01
299 300 5.530915 TGTGTTGTGAGTATTAAAGCTTGCT 59.469 36.000 0.00 0.00 0.00 3.91
300 301 6.708502 TGTGTTGTGAGTATTAAAGCTTGCTA 59.291 34.615 0.00 0.00 0.00 3.49
301 302 7.390440 TGTGTTGTGAGTATTAAAGCTTGCTAT 59.610 33.333 0.00 0.00 0.00 2.97
302 303 7.693951 GTGTTGTGAGTATTAAAGCTTGCTATG 59.306 37.037 0.00 0.00 0.00 2.23
303 304 7.390440 TGTTGTGAGTATTAAAGCTTGCTATGT 59.610 33.333 0.00 0.00 0.00 2.29
304 305 7.539712 TGTGAGTATTAAAGCTTGCTATGTC 57.460 36.000 0.00 0.00 0.00 3.06
305 306 7.331026 TGTGAGTATTAAAGCTTGCTATGTCT 58.669 34.615 0.00 0.00 0.00 3.41
306 307 7.278646 TGTGAGTATTAAAGCTTGCTATGTCTG 59.721 37.037 0.00 0.00 0.00 3.51
307 308 6.258727 TGAGTATTAAAGCTTGCTATGTCTGC 59.741 38.462 0.00 0.00 0.00 4.26
308 309 6.352516 AGTATTAAAGCTTGCTATGTCTGCT 58.647 36.000 0.00 0.00 35.30 4.24
309 310 4.952262 TTAAAGCTTGCTATGTCTGCTG 57.048 40.909 0.00 0.00 33.96 4.41
310 311 1.747709 AAGCTTGCTATGTCTGCTGG 58.252 50.000 0.00 0.00 33.96 4.85
311 312 0.617413 AGCTTGCTATGTCTGCTGGT 59.383 50.000 0.00 0.00 32.32 4.00
312 313 1.833630 AGCTTGCTATGTCTGCTGGTA 59.166 47.619 0.00 0.00 32.32 3.25
313 314 2.158986 AGCTTGCTATGTCTGCTGGTAG 60.159 50.000 0.00 0.00 32.32 3.18
314 315 2.419297 GCTTGCTATGTCTGCTGGTAGT 60.419 50.000 0.00 0.00 0.00 2.73
315 316 3.181475 GCTTGCTATGTCTGCTGGTAGTA 60.181 47.826 0.00 0.00 0.00 1.82
316 317 4.615949 CTTGCTATGTCTGCTGGTAGTAG 58.384 47.826 0.00 0.00 0.00 2.57
317 318 2.362397 TGCTATGTCTGCTGGTAGTAGC 59.638 50.000 0.00 0.00 43.95 3.58
318 319 2.605823 GCTATGTCTGCTGGTAGTAGCG 60.606 54.545 0.00 0.00 46.61 4.26
319 320 0.103208 ATGTCTGCTGGTAGTAGCGC 59.897 55.000 0.00 0.00 46.61 5.92
320 321 1.248101 TGTCTGCTGGTAGTAGCGCA 61.248 55.000 11.47 14.81 46.61 6.09
321 322 0.103208 GTCTGCTGGTAGTAGCGCAT 59.897 55.000 11.47 0.00 46.61 4.73
322 323 0.824109 TCTGCTGGTAGTAGCGCATT 59.176 50.000 11.47 0.00 46.61 3.56
323 324 0.933097 CTGCTGGTAGTAGCGCATTG 59.067 55.000 11.47 5.61 46.61 2.82
324 325 0.534873 TGCTGGTAGTAGCGCATTGA 59.465 50.000 11.47 0.00 46.61 2.57
325 326 0.931005 GCTGGTAGTAGCGCATTGAC 59.069 55.000 11.47 1.56 33.46 3.18
326 327 1.200483 CTGGTAGTAGCGCATTGACG 58.800 55.000 11.47 0.00 0.00 4.35
334 335 3.299585 CGCATTGACGCTAGGACG 58.700 61.111 0.00 0.00 39.50 4.79
335 336 1.226575 CGCATTGACGCTAGGACGA 60.227 57.895 0.00 0.00 36.70 4.20
336 337 1.202973 CGCATTGACGCTAGGACGAG 61.203 60.000 0.00 0.00 36.70 4.18
337 338 0.100682 GCATTGACGCTAGGACGAGA 59.899 55.000 0.00 0.00 36.70 4.04
338 339 1.269309 GCATTGACGCTAGGACGAGAT 60.269 52.381 0.00 0.00 36.70 2.75
339 340 2.799917 GCATTGACGCTAGGACGAGATT 60.800 50.000 0.00 0.00 36.70 2.40
340 341 2.846039 TTGACGCTAGGACGAGATTC 57.154 50.000 0.00 0.00 36.70 2.52
341 342 2.039818 TGACGCTAGGACGAGATTCT 57.960 50.000 0.00 0.00 36.70 2.40
342 343 1.941294 TGACGCTAGGACGAGATTCTC 59.059 52.381 3.43 3.43 36.70 2.87
354 355 3.543680 GAGATTCTCGGTTCAATCCCA 57.456 47.619 0.00 0.00 30.41 4.37
355 356 3.462021 GAGATTCTCGGTTCAATCCCAG 58.538 50.000 0.00 0.00 30.41 4.45
356 357 1.943340 GATTCTCGGTTCAATCCCAGC 59.057 52.381 0.00 0.00 0.00 4.85
357 358 0.984230 TTCTCGGTTCAATCCCAGCT 59.016 50.000 0.00 0.00 0.00 4.24
358 359 0.537188 TCTCGGTTCAATCCCAGCTC 59.463 55.000 0.00 0.00 0.00 4.09
359 360 0.807667 CTCGGTTCAATCCCAGCTCG 60.808 60.000 0.00 0.00 0.00 5.03
360 361 1.815421 CGGTTCAATCCCAGCTCGG 60.815 63.158 0.00 0.00 0.00 4.63
361 362 2.115291 GGTTCAATCCCAGCTCGGC 61.115 63.158 0.00 0.00 0.00 5.54
362 363 2.125147 TTCAATCCCAGCTCGGCG 60.125 61.111 0.00 0.00 0.00 6.46
363 364 4.838152 TCAATCCCAGCTCGGCGC 62.838 66.667 0.00 0.00 39.57 6.53
392 393 2.561733 TTGGCTACAGTTCTCGATCG 57.438 50.000 9.36 9.36 0.00 3.69
393 394 0.738975 TGGCTACAGTTCTCGATCGG 59.261 55.000 16.41 6.26 0.00 4.18
394 395 0.030908 GGCTACAGTTCTCGATCGGG 59.969 60.000 16.41 13.07 0.00 5.14
395 396 0.739561 GCTACAGTTCTCGATCGGGT 59.260 55.000 15.95 6.76 0.00 5.28
396 397 1.268640 GCTACAGTTCTCGATCGGGTC 60.269 57.143 15.95 9.68 0.00 4.46
397 398 2.290464 CTACAGTTCTCGATCGGGTCT 58.710 52.381 15.95 11.86 0.00 3.85
398 399 1.546961 ACAGTTCTCGATCGGGTCTT 58.453 50.000 15.95 0.00 0.00 3.01
399 400 1.893801 ACAGTTCTCGATCGGGTCTTT 59.106 47.619 15.95 5.42 0.00 2.52
400 401 3.087031 ACAGTTCTCGATCGGGTCTTTA 58.913 45.455 15.95 0.00 0.00 1.85
401 402 3.700038 ACAGTTCTCGATCGGGTCTTTAT 59.300 43.478 15.95 0.98 0.00 1.40
402 403 4.159879 ACAGTTCTCGATCGGGTCTTTATT 59.840 41.667 15.95 0.00 0.00 1.40
403 404 5.109903 CAGTTCTCGATCGGGTCTTTATTT 58.890 41.667 15.95 0.00 0.00 1.40
404 405 5.581085 CAGTTCTCGATCGGGTCTTTATTTT 59.419 40.000 15.95 0.00 0.00 1.82
405 406 5.581085 AGTTCTCGATCGGGTCTTTATTTTG 59.419 40.000 15.95 0.00 0.00 2.44
406 407 4.439057 TCTCGATCGGGTCTTTATTTTGG 58.561 43.478 15.95 0.00 0.00 3.28
407 408 4.160814 TCTCGATCGGGTCTTTATTTTGGA 59.839 41.667 15.95 0.00 0.00 3.53
408 409 4.186159 TCGATCGGGTCTTTATTTTGGAC 58.814 43.478 16.41 0.00 0.00 4.02
409 410 3.311596 CGATCGGGTCTTTATTTTGGACC 59.688 47.826 7.38 0.00 46.14 4.46
410 411 4.524053 GATCGGGTCTTTATTTTGGACCT 58.476 43.478 10.53 0.00 46.11 3.85
411 412 5.677567 GATCGGGTCTTTATTTTGGACCTA 58.322 41.667 10.53 1.61 46.11 3.08
412 413 4.835678 TCGGGTCTTTATTTTGGACCTAC 58.164 43.478 10.53 0.00 46.11 3.18
413 414 4.286549 TCGGGTCTTTATTTTGGACCTACA 59.713 41.667 10.53 0.00 46.11 2.74
414 415 4.634443 CGGGTCTTTATTTTGGACCTACAG 59.366 45.833 10.53 0.00 46.11 2.74
415 416 5.567430 GGGTCTTTATTTTGGACCTACAGT 58.433 41.667 10.53 0.00 46.11 3.55
416 417 6.008331 GGGTCTTTATTTTGGACCTACAGTT 58.992 40.000 10.53 0.00 46.11 3.16
417 418 6.150641 GGGTCTTTATTTTGGACCTACAGTTC 59.849 42.308 10.53 0.00 46.11 3.01
418 419 6.940867 GGTCTTTATTTTGGACCTACAGTTCT 59.059 38.462 0.00 0.00 44.21 3.01
419 420 7.119407 GGTCTTTATTTTGGACCTACAGTTCTC 59.881 40.741 0.00 0.00 44.21 2.87
420 421 7.660208 GTCTTTATTTTGGACCTACAGTTCTCA 59.340 37.037 0.00 0.00 0.00 3.27
421 422 8.215050 TCTTTATTTTGGACCTACAGTTCTCAA 58.785 33.333 0.00 0.00 0.00 3.02
422 423 8.934023 TTTATTTTGGACCTACAGTTCTCAAT 57.066 30.769 0.00 0.00 0.00 2.57
423 424 8.561738 TTATTTTGGACCTACAGTTCTCAATC 57.438 34.615 0.00 0.00 0.00 2.67
424 425 3.868757 TGGACCTACAGTTCTCAATCG 57.131 47.619 0.00 0.00 0.00 3.34
425 426 2.496070 TGGACCTACAGTTCTCAATCGG 59.504 50.000 0.00 0.00 0.00 4.18
426 427 2.159085 GGACCTACAGTTCTCAATCGGG 60.159 54.545 0.00 0.00 0.00 5.14
427 428 1.207329 ACCTACAGTTCTCAATCGGGC 59.793 52.381 0.00 0.00 0.00 6.13
428 429 1.473434 CCTACAGTTCTCAATCGGGCC 60.473 57.143 0.00 0.00 0.00 5.80
429 430 0.174845 TACAGTTCTCAATCGGGCCG 59.825 55.000 22.51 22.51 0.00 6.13
430 431 1.815421 CAGTTCTCAATCGGGCCGG 60.815 63.158 27.98 10.57 0.00 6.13
431 432 3.202706 GTTCTCAATCGGGCCGGC 61.203 66.667 27.98 21.18 0.00 6.13
432 433 4.483243 TTCTCAATCGGGCCGGCC 62.483 66.667 38.57 38.57 0.00 6.13
442 443 2.438795 GGCCGGCCCAATCGTAAA 60.439 61.111 36.64 0.00 0.00 2.01
443 444 2.767445 GGCCGGCCCAATCGTAAAC 61.767 63.158 36.64 4.38 0.00 2.01
444 445 2.767445 GCCGGCCCAATCGTAAACC 61.767 63.158 18.11 0.00 0.00 3.27
445 446 2.466140 CCGGCCCAATCGTAAACCG 61.466 63.158 0.00 0.00 40.30 4.44
446 447 2.795973 GGCCCAATCGTAAACCGC 59.204 61.111 0.00 0.00 36.19 5.68
447 448 2.767445 GGCCCAATCGTAAACCGCC 61.767 63.158 0.00 0.00 36.19 6.13
448 449 1.747745 GCCCAATCGTAAACCGCCT 60.748 57.895 0.00 0.00 36.19 5.52
449 450 1.988834 GCCCAATCGTAAACCGCCTG 61.989 60.000 0.00 0.00 36.19 4.85
450 451 0.675522 CCCAATCGTAAACCGCCTGT 60.676 55.000 0.00 0.00 36.19 4.00
451 452 0.446222 CCAATCGTAAACCGCCTGTG 59.554 55.000 0.00 0.00 36.19 3.66
452 453 0.179200 CAATCGTAAACCGCCTGTGC 60.179 55.000 0.00 0.00 36.19 4.57
478 479 3.749064 GACGACCTGCCGCAGAGA 61.749 66.667 22.35 0.00 32.44 3.10
479 480 3.691744 GACGACCTGCCGCAGAGAG 62.692 68.421 22.35 13.53 32.44 3.20
489 490 2.105930 GCAGAGAGCGGCAGGTAG 59.894 66.667 1.45 0.00 35.17 3.18
490 491 2.811101 CAGAGAGCGGCAGGTAGG 59.189 66.667 1.45 0.00 0.00 3.18
491 492 1.754621 CAGAGAGCGGCAGGTAGGA 60.755 63.158 1.45 0.00 0.00 2.94
492 493 1.454847 AGAGAGCGGCAGGTAGGAG 60.455 63.158 1.45 0.00 0.00 3.69
493 494 3.145422 GAGAGCGGCAGGTAGGAGC 62.145 68.421 1.45 0.00 0.00 4.70
494 495 3.151022 GAGCGGCAGGTAGGAGCT 61.151 66.667 1.45 0.00 41.29 4.09
495 496 3.145422 GAGCGGCAGGTAGGAGCTC 62.145 68.421 4.71 4.71 45.74 4.09
496 497 4.228567 GCGGCAGGTAGGAGCTCC 62.229 72.222 26.22 26.22 0.00 4.70
497 498 3.541713 CGGCAGGTAGGAGCTCCC 61.542 72.222 29.54 14.82 36.42 4.30
498 499 3.164977 GGCAGGTAGGAGCTCCCC 61.165 72.222 29.54 23.20 36.42 4.81
499 500 2.365635 GCAGGTAGGAGCTCCCCA 60.366 66.667 29.54 15.01 36.42 4.96
500 501 1.995626 GCAGGTAGGAGCTCCCCAA 60.996 63.158 29.54 12.60 36.42 4.12
501 502 1.348775 GCAGGTAGGAGCTCCCCAAT 61.349 60.000 29.54 13.43 36.42 3.16
502 503 1.216990 CAGGTAGGAGCTCCCCAATT 58.783 55.000 29.54 13.02 36.42 2.32
503 504 1.566231 CAGGTAGGAGCTCCCCAATTT 59.434 52.381 29.54 12.24 36.42 1.82
504 505 1.847088 AGGTAGGAGCTCCCCAATTTC 59.153 52.381 29.54 11.76 36.42 2.17
505 506 1.847088 GGTAGGAGCTCCCCAATTTCT 59.153 52.381 29.54 10.66 36.42 2.52
506 507 2.422093 GGTAGGAGCTCCCCAATTTCTG 60.422 54.545 29.54 0.00 36.42 3.02
507 508 1.673767 AGGAGCTCCCCAATTTCTGA 58.326 50.000 29.54 0.00 36.42 3.27
508 509 1.995542 AGGAGCTCCCCAATTTCTGAA 59.004 47.619 29.54 0.00 36.42 3.02
509 510 2.095461 GGAGCTCCCCAATTTCTGAAC 58.905 52.381 23.19 0.00 0.00 3.18
510 511 2.555227 GGAGCTCCCCAATTTCTGAACA 60.555 50.000 23.19 0.00 0.00 3.18
511 512 2.751806 GAGCTCCCCAATTTCTGAACAG 59.248 50.000 0.87 0.00 0.00 3.16
512 513 2.376518 AGCTCCCCAATTTCTGAACAGA 59.623 45.455 0.00 0.00 35.27 3.41
513 514 3.011032 AGCTCCCCAATTTCTGAACAGAT 59.989 43.478 5.34 0.00 37.29 2.90
514 515 3.379688 GCTCCCCAATTTCTGAACAGATC 59.620 47.826 5.34 0.00 37.29 2.75
515 516 4.853007 CTCCCCAATTTCTGAACAGATCT 58.147 43.478 5.34 0.00 37.29 2.75
516 517 4.592942 TCCCCAATTTCTGAACAGATCTG 58.407 43.478 21.37 21.37 37.29 2.90
528 529 3.618690 ACAGATCTGTTAGGTTCCTGC 57.381 47.619 22.89 0.00 41.83 4.85
529 530 3.177228 ACAGATCTGTTAGGTTCCTGCT 58.823 45.455 22.89 0.00 41.83 4.24
530 531 3.055530 ACAGATCTGTTAGGTTCCTGCTG 60.056 47.826 22.89 0.00 41.83 4.41
531 532 3.055530 CAGATCTGTTAGGTTCCTGCTGT 60.056 47.826 14.95 0.00 0.00 4.40
532 533 3.584848 AGATCTGTTAGGTTCCTGCTGTT 59.415 43.478 0.00 0.00 0.00 3.16
533 534 4.777896 AGATCTGTTAGGTTCCTGCTGTTA 59.222 41.667 0.00 0.00 0.00 2.41
565 566 2.969950 TCGATCCCGGTTCCTTTGATAT 59.030 45.455 0.00 0.00 36.24 1.63
653 656 0.250252 AAAATTTTGGTGCCGGCAGG 60.250 50.000 33.73 0.00 41.62 4.85
754 764 0.678366 ACCACCTCGCACAACAAACA 60.678 50.000 0.00 0.00 0.00 2.83
755 765 0.029300 CCACCTCGCACAACAAACAG 59.971 55.000 0.00 0.00 0.00 3.16
757 767 1.014352 ACCTCGCACAACAAACAGAC 58.986 50.000 0.00 0.00 0.00 3.51
758 768 0.042188 CCTCGCACAACAAACAGACG 60.042 55.000 0.00 0.00 0.00 4.18
759 769 0.654472 CTCGCACAACAAACAGACGC 60.654 55.000 0.00 0.00 0.00 5.19
760 770 1.998257 CGCACAACAAACAGACGCG 60.998 57.895 3.53 3.53 34.89 6.01
773 783 0.465824 AGACGCGCCATACCTACTCT 60.466 55.000 5.73 0.00 0.00 3.24
975 1020 0.040958 CACAAAGGACGTGCAGAAGC 60.041 55.000 10.52 0.00 42.57 3.86
1106 1155 2.815647 CTCCTCCAAGAACCGCGC 60.816 66.667 0.00 0.00 0.00 6.86
1500 1549 4.814294 GCGATCGACCGGTTGCCT 62.814 66.667 21.57 6.70 0.00 4.75
1517 1566 2.606519 TCTGGTGAAGGGGGACGG 60.607 66.667 0.00 0.00 0.00 4.79
1798 1868 6.258160 ACAACAGAAACTTTTCAATGTCTCG 58.742 36.000 4.58 0.00 39.61 4.04
1809 1879 6.429791 TTTCAATGTCTCGAAAGAAACACA 57.570 33.333 0.00 0.00 44.97 3.72
2024 2132 5.010922 TGCAAAACATCCTAGAGCATTTTGT 59.989 36.000 16.61 0.00 38.61 2.83
2170 2279 2.089980 GTCAATGCATCAGAAGTGCCT 58.910 47.619 0.00 0.00 41.83 4.75
2179 2288 1.901833 TCAGAAGTGCCTGCATCAGTA 59.098 47.619 0.00 0.00 34.28 2.74
2203 2312 2.286365 TACCCAGCAAAGTTCCCTTG 57.714 50.000 0.00 0.00 0.00 3.61
2336 2445 3.807553 TCAAACTGACACATGCTCAAGA 58.192 40.909 0.00 0.00 0.00 3.02
2362 2471 2.667969 TGAAGATGTCGCAACAAGATCG 59.332 45.455 0.00 0.00 39.30 3.69
2466 2575 8.973835 AAATTTGTCTAGATAGATACTAGCGC 57.026 34.615 0.00 0.00 37.73 5.92
2467 2576 7.931578 ATTTGTCTAGATAGATACTAGCGCT 57.068 36.000 17.26 17.26 37.73 5.92
2493 2622 2.751806 AGCAGCCAAATCTAAGACAAGC 59.248 45.455 0.00 0.00 0.00 4.01
2530 2663 1.795768 ACACCTGCACAATCTACACG 58.204 50.000 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.821894 CCCGAACAAAAATTGAAAACATTTAGA 58.178 29.630 0.00 0.00 0.00 2.10
16 17 8.821894 TCCCGAACAAAAATTGAAAACATTTAG 58.178 29.630 0.00 0.00 0.00 1.85
17 18 8.718102 TCCCGAACAAAAATTGAAAACATTTA 57.282 26.923 0.00 0.00 0.00 1.40
18 19 7.335673 ACTCCCGAACAAAAATTGAAAACATTT 59.664 29.630 0.00 0.00 0.00 2.32
19 20 6.821160 ACTCCCGAACAAAAATTGAAAACATT 59.179 30.769 0.00 0.00 0.00 2.71
20 21 6.345298 ACTCCCGAACAAAAATTGAAAACAT 58.655 32.000 0.00 0.00 0.00 2.71
21 22 5.725362 ACTCCCGAACAAAAATTGAAAACA 58.275 33.333 0.00 0.00 0.00 2.83
22 23 6.656314 AACTCCCGAACAAAAATTGAAAAC 57.344 33.333 0.00 0.00 0.00 2.43
23 24 8.773404 TTAAACTCCCGAACAAAAATTGAAAA 57.227 26.923 0.00 0.00 0.00 2.29
24 25 8.950208 ATTAAACTCCCGAACAAAAATTGAAA 57.050 26.923 0.00 0.00 0.00 2.69
25 26 8.950208 AATTAAACTCCCGAACAAAAATTGAA 57.050 26.923 0.00 0.00 0.00 2.69
26 27 8.950208 AAATTAAACTCCCGAACAAAAATTGA 57.050 26.923 0.00 0.00 0.00 2.57
27 28 9.995957 AAAAATTAAACTCCCGAACAAAAATTG 57.004 25.926 0.00 0.00 0.00 2.32
53 54 7.390027 TCCAGAACAAAATTTCAAAAGGTGAA 58.610 30.769 0.00 0.00 44.74 3.18
54 55 6.940739 TCCAGAACAAAATTTCAAAAGGTGA 58.059 32.000 0.00 0.00 0.00 4.02
55 56 7.608308 TTCCAGAACAAAATTTCAAAAGGTG 57.392 32.000 0.00 0.00 0.00 4.00
56 57 8.806429 AATTCCAGAACAAAATTTCAAAAGGT 57.194 26.923 0.00 0.00 0.00 3.50
68 69 9.114952 GGGAAATTTTTGTAATTCCAGAACAAA 57.885 29.630 5.82 0.38 42.50 2.83
69 70 7.717436 GGGGAAATTTTTGTAATTCCAGAACAA 59.283 33.333 5.82 0.00 42.50 2.83
70 71 7.220740 GGGGAAATTTTTGTAATTCCAGAACA 58.779 34.615 5.82 0.00 42.50 3.18
71 72 6.367695 CGGGGAAATTTTTGTAATTCCAGAAC 59.632 38.462 5.82 0.00 42.50 3.01
72 73 6.042208 ACGGGGAAATTTTTGTAATTCCAGAA 59.958 34.615 5.82 0.00 42.50 3.02
73 74 5.540719 ACGGGGAAATTTTTGTAATTCCAGA 59.459 36.000 5.82 0.00 42.50 3.86
74 75 5.789521 ACGGGGAAATTTTTGTAATTCCAG 58.210 37.500 5.82 2.18 42.50 3.86
75 76 5.810080 ACGGGGAAATTTTTGTAATTCCA 57.190 34.783 5.82 0.00 42.50 3.53
76 77 7.548967 TGATACGGGGAAATTTTTGTAATTCC 58.451 34.615 0.00 0.00 40.48 3.01
77 78 8.989653 TTGATACGGGGAAATTTTTGTAATTC 57.010 30.769 0.00 0.00 0.00 2.17
78 79 9.780186 TTTTGATACGGGGAAATTTTTGTAATT 57.220 25.926 0.00 0.00 0.00 1.40
79 80 9.780186 TTTTTGATACGGGGAAATTTTTGTAAT 57.220 25.926 0.00 0.00 0.00 1.89
104 105 9.866936 CACATTTTCGAAAATCATGAACAATTT 57.133 25.926 28.70 6.00 36.52 1.82
105 106 8.497554 CCACATTTTCGAAAATCATGAACAATT 58.502 29.630 29.35 10.93 36.52 2.32
106 107 7.360269 GCCACATTTTCGAAAATCATGAACAAT 60.360 33.333 29.35 11.33 36.52 2.71
107 108 6.073873 GCCACATTTTCGAAAATCATGAACAA 60.074 34.615 29.35 9.20 36.52 2.83
108 109 5.404968 GCCACATTTTCGAAAATCATGAACA 59.595 36.000 29.35 9.80 36.52 3.18
109 110 5.404968 TGCCACATTTTCGAAAATCATGAAC 59.595 36.000 29.35 23.61 36.52 3.18
110 111 5.536260 TGCCACATTTTCGAAAATCATGAA 58.464 33.333 29.35 20.32 36.52 2.57
111 112 5.131594 TGCCACATTTTCGAAAATCATGA 57.868 34.783 29.35 17.08 36.52 3.07
112 113 4.925054 ACTGCCACATTTTCGAAAATCATG 59.075 37.500 28.70 26.39 36.52 3.07
113 114 5.138125 ACTGCCACATTTTCGAAAATCAT 57.862 34.783 28.70 18.84 36.52 2.45
114 115 4.582701 ACTGCCACATTTTCGAAAATCA 57.417 36.364 28.70 22.15 36.52 2.57
115 116 5.905480 AAACTGCCACATTTTCGAAAATC 57.095 34.783 28.70 19.30 36.52 2.17
116 117 6.676237 AAAAACTGCCACATTTTCGAAAAT 57.324 29.167 26.51 26.51 39.07 1.82
117 118 7.596749 TTAAAAACTGCCACATTTTCGAAAA 57.403 28.000 24.43 24.43 0.00 2.29
118 119 7.778470 ATTAAAAACTGCCACATTTTCGAAA 57.222 28.000 6.47 6.47 0.00 3.46
119 120 8.873215 TTATTAAAAACTGCCACATTTTCGAA 57.127 26.923 0.00 0.00 0.00 3.71
120 121 8.873215 TTTATTAAAAACTGCCACATTTTCGA 57.127 26.923 0.00 0.00 0.00 3.71
127 128 9.383519 TGAACAATTTTATTAAAAACTGCCACA 57.616 25.926 5.73 5.64 35.69 4.17
128 129 9.644993 GTGAACAATTTTATTAAAAACTGCCAC 57.355 29.630 5.73 12.04 35.69 5.01
129 130 8.543774 CGTGAACAATTTTATTAAAAACTGCCA 58.456 29.630 5.73 6.06 35.69 4.92
130 131 8.007152 CCGTGAACAATTTTATTAAAAACTGCC 58.993 33.333 5.73 4.13 35.69 4.85
131 132 8.544597 ACCGTGAACAATTTTATTAAAAACTGC 58.455 29.630 5.73 0.00 35.69 4.40
141 142 9.974980 ACTTTTGAATACCGTGAACAATTTTAT 57.025 25.926 0.00 0.00 0.00 1.40
143 144 9.458374 CTACTTTTGAATACCGTGAACAATTTT 57.542 29.630 0.00 0.00 0.00 1.82
144 145 8.626526 ACTACTTTTGAATACCGTGAACAATTT 58.373 29.630 0.00 0.00 0.00 1.82
145 146 8.161699 ACTACTTTTGAATACCGTGAACAATT 57.838 30.769 0.00 0.00 0.00 2.32
146 147 7.739498 ACTACTTTTGAATACCGTGAACAAT 57.261 32.000 0.00 0.00 0.00 2.71
147 148 7.411274 CAACTACTTTTGAATACCGTGAACAA 58.589 34.615 0.00 0.00 0.00 2.83
148 149 6.512091 GCAACTACTTTTGAATACCGTGAACA 60.512 38.462 0.00 0.00 0.00 3.18
149 150 5.849604 GCAACTACTTTTGAATACCGTGAAC 59.150 40.000 0.00 0.00 0.00 3.18
150 151 5.333492 CGCAACTACTTTTGAATACCGTGAA 60.333 40.000 0.00 0.00 0.00 3.18
151 152 4.150980 CGCAACTACTTTTGAATACCGTGA 59.849 41.667 0.00 0.00 0.00 4.35
152 153 4.084223 ACGCAACTACTTTTGAATACCGTG 60.084 41.667 0.00 0.00 0.00 4.94
153 154 4.060205 ACGCAACTACTTTTGAATACCGT 58.940 39.130 0.00 0.00 0.00 4.83
154 155 4.657075 ACGCAACTACTTTTGAATACCG 57.343 40.909 0.00 0.00 0.00 4.02
155 156 6.358822 GTGAAACGCAACTACTTTTGAATACC 59.641 38.462 0.00 0.00 0.00 2.73
156 157 6.908284 TGTGAAACGCAACTACTTTTGAATAC 59.092 34.615 0.00 0.00 42.39 1.89
157 158 7.017498 TGTGAAACGCAACTACTTTTGAATA 57.983 32.000 0.00 0.00 42.39 1.75
158 159 5.885881 TGTGAAACGCAACTACTTTTGAAT 58.114 33.333 0.00 0.00 42.39 2.57
159 160 5.298197 TGTGAAACGCAACTACTTTTGAA 57.702 34.783 0.00 0.00 42.39 2.69
160 161 4.948608 TGTGAAACGCAACTACTTTTGA 57.051 36.364 0.00 0.00 42.39 2.69
161 162 6.129062 TGTTTTGTGAAACGCAACTACTTTTG 60.129 34.615 0.00 0.00 46.44 2.44
162 163 5.921408 TGTTTTGTGAAACGCAACTACTTTT 59.079 32.000 0.00 0.00 46.44 2.27
163 164 5.462405 TGTTTTGTGAAACGCAACTACTTT 58.538 33.333 0.00 0.00 46.44 2.66
164 165 5.049398 TGTTTTGTGAAACGCAACTACTT 57.951 34.783 0.00 0.00 46.44 2.24
165 166 4.688511 TGTTTTGTGAAACGCAACTACT 57.311 36.364 0.00 0.00 46.44 2.57
166 167 4.439776 GGATGTTTTGTGAAACGCAACTAC 59.560 41.667 0.00 0.00 46.44 2.73
167 168 4.602995 GGATGTTTTGTGAAACGCAACTA 58.397 39.130 0.00 0.00 46.44 2.24
168 169 3.443976 GGATGTTTTGTGAAACGCAACT 58.556 40.909 0.00 0.00 46.44 3.16
169 170 2.215363 CGGATGTTTTGTGAAACGCAAC 59.785 45.455 0.00 0.00 46.44 4.17
170 171 2.455032 CGGATGTTTTGTGAAACGCAA 58.545 42.857 0.00 0.00 46.44 4.85
171 172 1.268794 CCGGATGTTTTGTGAAACGCA 60.269 47.619 0.00 0.00 46.44 5.24
172 173 1.404477 CCGGATGTTTTGTGAAACGC 58.596 50.000 0.00 0.00 46.44 4.84
173 174 1.335496 ACCCGGATGTTTTGTGAAACG 59.665 47.619 0.73 0.00 46.44 3.60
174 175 3.120041 CAACCCGGATGTTTTGTGAAAC 58.880 45.455 0.73 0.00 44.29 2.78
175 176 2.761208 ACAACCCGGATGTTTTGTGAAA 59.239 40.909 0.73 0.00 30.99 2.69
176 177 2.379972 ACAACCCGGATGTTTTGTGAA 58.620 42.857 0.73 0.00 30.99 3.18
177 178 2.060050 ACAACCCGGATGTTTTGTGA 57.940 45.000 0.73 0.00 30.99 3.58
178 179 2.880963 AACAACCCGGATGTTTTGTG 57.119 45.000 16.87 0.34 37.74 3.33
197 198 8.560576 TTCAAACGCATTTTTCAAAACAAAAA 57.439 23.077 0.00 0.00 39.09 1.94
198 199 8.560576 TTTCAAACGCATTTTTCAAAACAAAA 57.439 23.077 0.00 0.00 0.00 2.44
199 200 8.733857 ATTTCAAACGCATTTTTCAAAACAAA 57.266 23.077 0.00 0.00 0.00 2.83
200 201 8.733857 AATTTCAAACGCATTTTTCAAAACAA 57.266 23.077 0.00 0.00 0.00 2.83
201 202 8.733857 AAATTTCAAACGCATTTTTCAAAACA 57.266 23.077 0.00 0.00 0.00 2.83
202 203 8.844690 TGAAATTTCAAACGCATTTTTCAAAAC 58.155 25.926 18.45 0.00 33.55 2.43
203 204 8.955061 TGAAATTTCAAACGCATTTTTCAAAA 57.045 23.077 18.45 0.00 33.55 2.44
204 205 8.955061 TTGAAATTTCAAACGCATTTTTCAAA 57.045 23.077 27.22 2.92 43.62 2.69
230 231 2.009774 CCGAGCACAGATCCGATTTTT 58.990 47.619 0.00 0.00 0.00 1.94
231 232 1.066143 ACCGAGCACAGATCCGATTTT 60.066 47.619 0.00 0.00 0.00 1.82
232 233 0.537188 ACCGAGCACAGATCCGATTT 59.463 50.000 0.00 0.00 0.00 2.17
233 234 1.338337 CTACCGAGCACAGATCCGATT 59.662 52.381 0.00 0.00 0.00 3.34
234 235 0.955178 CTACCGAGCACAGATCCGAT 59.045 55.000 0.00 0.00 0.00 4.18
235 236 0.393944 ACTACCGAGCACAGATCCGA 60.394 55.000 0.00 0.00 0.00 4.55
236 237 0.456221 AACTACCGAGCACAGATCCG 59.544 55.000 0.00 0.00 0.00 4.18
237 238 2.271800 CAAACTACCGAGCACAGATCC 58.728 52.381 0.00 0.00 0.00 3.36
238 239 2.668457 CACAAACTACCGAGCACAGATC 59.332 50.000 0.00 0.00 0.00 2.75
239 240 2.688507 CACAAACTACCGAGCACAGAT 58.311 47.619 0.00 0.00 0.00 2.90
240 241 1.872237 GCACAAACTACCGAGCACAGA 60.872 52.381 0.00 0.00 0.00 3.41
241 242 0.512952 GCACAAACTACCGAGCACAG 59.487 55.000 0.00 0.00 0.00 3.66
242 243 0.105964 AGCACAAACTACCGAGCACA 59.894 50.000 0.00 0.00 0.00 4.57
243 244 1.226746 AAGCACAAACTACCGAGCAC 58.773 50.000 0.00 0.00 0.00 4.40
244 245 2.823924 TAAGCACAAACTACCGAGCA 57.176 45.000 0.00 0.00 0.00 4.26
245 246 3.120304 CCTTTAAGCACAAACTACCGAGC 60.120 47.826 0.00 0.00 0.00 5.03
246 247 4.062991 ACCTTTAAGCACAAACTACCGAG 58.937 43.478 0.00 0.00 0.00 4.63
247 248 4.075963 ACCTTTAAGCACAAACTACCGA 57.924 40.909 0.00 0.00 0.00 4.69
248 249 4.823790 AACCTTTAAGCACAAACTACCG 57.176 40.909 0.00 0.00 0.00 4.02
249 250 4.743151 GCAAACCTTTAAGCACAAACTACC 59.257 41.667 0.00 0.00 0.00 3.18
250 251 4.439776 CGCAAACCTTTAAGCACAAACTAC 59.560 41.667 0.00 0.00 0.00 2.73
251 252 4.602995 CGCAAACCTTTAAGCACAAACTA 58.397 39.130 0.00 0.00 0.00 2.24
252 253 3.443976 CGCAAACCTTTAAGCACAAACT 58.556 40.909 0.00 0.00 0.00 2.66
253 254 2.034086 GCGCAAACCTTTAAGCACAAAC 60.034 45.455 0.30 0.00 0.00 2.93
254 255 2.159170 AGCGCAAACCTTTAAGCACAAA 60.159 40.909 11.47 0.00 0.00 2.83
255 256 1.407258 AGCGCAAACCTTTAAGCACAA 59.593 42.857 11.47 0.00 0.00 3.33
256 257 1.028905 AGCGCAAACCTTTAAGCACA 58.971 45.000 11.47 0.00 0.00 4.57
257 258 1.269051 ACAGCGCAAACCTTTAAGCAC 60.269 47.619 11.47 0.00 0.00 4.40
258 259 1.028905 ACAGCGCAAACCTTTAAGCA 58.971 45.000 11.47 0.00 0.00 3.91
259 260 1.269051 ACACAGCGCAAACCTTTAAGC 60.269 47.619 11.47 0.00 0.00 3.09
260 261 2.774439 ACACAGCGCAAACCTTTAAG 57.226 45.000 11.47 0.00 0.00 1.85
261 262 2.164624 ACAACACAGCGCAAACCTTTAA 59.835 40.909 11.47 0.00 0.00 1.52
262 263 1.746220 ACAACACAGCGCAAACCTTTA 59.254 42.857 11.47 0.00 0.00 1.85
263 264 0.530288 ACAACACAGCGCAAACCTTT 59.470 45.000 11.47 0.00 0.00 3.11
264 265 0.179140 CACAACACAGCGCAAACCTT 60.179 50.000 11.47 0.00 0.00 3.50
265 266 1.029408 TCACAACACAGCGCAAACCT 61.029 50.000 11.47 0.00 0.00 3.50
266 267 0.592247 CTCACAACACAGCGCAAACC 60.592 55.000 11.47 0.00 0.00 3.27
267 268 0.098728 ACTCACAACACAGCGCAAAC 59.901 50.000 11.47 0.00 0.00 2.93
268 269 1.657822 TACTCACAACACAGCGCAAA 58.342 45.000 11.47 0.00 0.00 3.68
269 270 1.877637 ATACTCACAACACAGCGCAA 58.122 45.000 11.47 0.00 0.00 4.85
270 271 1.877637 AATACTCACAACACAGCGCA 58.122 45.000 11.47 0.00 0.00 6.09
271 272 4.394795 CTTTAATACTCACAACACAGCGC 58.605 43.478 0.00 0.00 0.00 5.92
272 273 4.152402 AGCTTTAATACTCACAACACAGCG 59.848 41.667 0.00 0.00 0.00 5.18
273 274 5.613358 AGCTTTAATACTCACAACACAGC 57.387 39.130 0.00 0.00 0.00 4.40
274 275 5.853282 GCAAGCTTTAATACTCACAACACAG 59.147 40.000 0.00 0.00 0.00 3.66
275 276 5.530915 AGCAAGCTTTAATACTCACAACACA 59.469 36.000 0.00 0.00 0.00 3.72
276 277 6.002062 AGCAAGCTTTAATACTCACAACAC 57.998 37.500 0.00 0.00 0.00 3.32
277 278 7.390440 ACATAGCAAGCTTTAATACTCACAACA 59.610 33.333 0.00 0.00 0.00 3.33
278 279 7.752695 ACATAGCAAGCTTTAATACTCACAAC 58.247 34.615 0.00 0.00 0.00 3.32
279 280 7.824289 AGACATAGCAAGCTTTAATACTCACAA 59.176 33.333 0.00 0.00 0.00 3.33
280 281 7.278646 CAGACATAGCAAGCTTTAATACTCACA 59.721 37.037 0.00 0.00 0.00 3.58
281 282 7.625553 CAGACATAGCAAGCTTTAATACTCAC 58.374 38.462 0.00 0.00 0.00 3.51
282 283 6.258727 GCAGACATAGCAAGCTTTAATACTCA 59.741 38.462 0.00 0.00 0.00 3.41
283 284 6.481644 AGCAGACATAGCAAGCTTTAATACTC 59.518 38.462 0.00 0.00 29.98 2.59
284 285 6.259608 CAGCAGACATAGCAAGCTTTAATACT 59.740 38.462 0.00 0.00 32.35 2.12
285 286 6.425504 CAGCAGACATAGCAAGCTTTAATAC 58.574 40.000 0.00 0.00 32.35 1.89
286 287 5.528690 CCAGCAGACATAGCAAGCTTTAATA 59.471 40.000 0.00 0.00 32.35 0.98
287 288 4.337555 CCAGCAGACATAGCAAGCTTTAAT 59.662 41.667 0.00 0.00 32.35 1.40
288 289 3.691118 CCAGCAGACATAGCAAGCTTTAA 59.309 43.478 0.00 0.00 32.35 1.52
289 290 3.273434 CCAGCAGACATAGCAAGCTTTA 58.727 45.455 0.00 0.00 32.35 1.85
290 291 2.089980 CCAGCAGACATAGCAAGCTTT 58.910 47.619 0.00 0.00 32.35 3.51
291 292 1.004044 ACCAGCAGACATAGCAAGCTT 59.996 47.619 0.00 0.00 32.35 3.74
292 293 0.617413 ACCAGCAGACATAGCAAGCT 59.383 50.000 0.00 0.00 35.63 3.74
293 294 2.208431 CTACCAGCAGACATAGCAAGC 58.792 52.381 0.00 0.00 0.00 4.01
294 295 3.533606 ACTACCAGCAGACATAGCAAG 57.466 47.619 0.00 0.00 0.00 4.01
295 296 3.181475 GCTACTACCAGCAGACATAGCAA 60.181 47.826 0.00 0.00 41.40 3.91
296 297 2.362397 GCTACTACCAGCAGACATAGCA 59.638 50.000 0.00 0.00 41.40 3.49
297 298 2.605823 CGCTACTACCAGCAGACATAGC 60.606 54.545 0.00 0.00 41.88 2.97
298 299 2.605823 GCGCTACTACCAGCAGACATAG 60.606 54.545 0.00 0.00 41.88 2.23
299 300 1.337071 GCGCTACTACCAGCAGACATA 59.663 52.381 0.00 0.00 41.88 2.29
300 301 0.103208 GCGCTACTACCAGCAGACAT 59.897 55.000 0.00 0.00 41.88 3.06
301 302 1.248101 TGCGCTACTACCAGCAGACA 61.248 55.000 9.73 0.00 41.88 3.41
302 303 0.103208 ATGCGCTACTACCAGCAGAC 59.897 55.000 9.73 0.00 43.20 3.51
303 304 0.824109 AATGCGCTACTACCAGCAGA 59.176 50.000 9.73 0.00 43.20 4.26
304 305 0.933097 CAATGCGCTACTACCAGCAG 59.067 55.000 9.73 0.00 43.20 4.24
305 306 0.534873 TCAATGCGCTACTACCAGCA 59.465 50.000 9.73 0.00 41.88 4.41
306 307 0.931005 GTCAATGCGCTACTACCAGC 59.069 55.000 9.73 0.00 38.23 4.85
307 308 1.200483 CGTCAATGCGCTACTACCAG 58.800 55.000 9.73 0.00 0.00 4.00
308 309 3.339061 CGTCAATGCGCTACTACCA 57.661 52.632 9.73 0.00 0.00 3.25
317 318 1.202973 CTCGTCCTAGCGTCAATGCG 61.203 60.000 0.00 0.00 40.67 4.73
318 319 0.100682 TCTCGTCCTAGCGTCAATGC 59.899 55.000 0.00 0.00 0.00 3.56
319 320 2.783828 ATCTCGTCCTAGCGTCAATG 57.216 50.000 0.00 0.00 0.00 2.82
320 321 2.952978 AGAATCTCGTCCTAGCGTCAAT 59.047 45.455 0.00 0.00 0.00 2.57
321 322 2.355132 GAGAATCTCGTCCTAGCGTCAA 59.645 50.000 0.00 0.00 0.00 3.18
322 323 1.941294 GAGAATCTCGTCCTAGCGTCA 59.059 52.381 0.00 0.00 0.00 4.35
323 324 2.673976 GAGAATCTCGTCCTAGCGTC 57.326 55.000 0.00 0.00 0.00 5.19
334 335 3.462021 CTGGGATTGAACCGAGAATCTC 58.538 50.000 0.00 0.00 37.86 2.75
335 336 2.420687 GCTGGGATTGAACCGAGAATCT 60.421 50.000 0.00 0.00 37.86 2.40
336 337 1.943340 GCTGGGATTGAACCGAGAATC 59.057 52.381 0.00 0.00 37.86 2.52
337 338 1.561542 AGCTGGGATTGAACCGAGAAT 59.438 47.619 0.00 0.00 37.86 2.40
338 339 0.984230 AGCTGGGATTGAACCGAGAA 59.016 50.000 0.00 0.00 37.86 2.87
339 340 0.537188 GAGCTGGGATTGAACCGAGA 59.463 55.000 0.00 0.00 37.86 4.04
340 341 0.807667 CGAGCTGGGATTGAACCGAG 60.808 60.000 0.00 0.00 38.50 4.63
341 342 1.218047 CGAGCTGGGATTGAACCGA 59.782 57.895 0.00 0.00 0.00 4.69
342 343 1.815421 CCGAGCTGGGATTGAACCG 60.815 63.158 9.58 0.00 0.00 4.44
343 344 2.115291 GCCGAGCTGGGATTGAACC 61.115 63.158 20.35 0.00 38.63 3.62
344 345 2.464459 CGCCGAGCTGGGATTGAAC 61.464 63.158 20.35 0.00 38.63 3.18
345 346 2.125147 CGCCGAGCTGGGATTGAA 60.125 61.111 20.35 0.00 38.63 2.69
346 347 4.838152 GCGCCGAGCTGGGATTGA 62.838 66.667 20.35 0.00 44.04 2.57
370 371 3.678072 CGATCGAGAACTGTAGCCAAAAA 59.322 43.478 10.26 0.00 0.00 1.94
371 372 3.250744 CGATCGAGAACTGTAGCCAAAA 58.749 45.455 10.26 0.00 0.00 2.44
372 373 2.416836 CCGATCGAGAACTGTAGCCAAA 60.417 50.000 18.66 0.00 0.00 3.28
373 374 1.134367 CCGATCGAGAACTGTAGCCAA 59.866 52.381 18.66 0.00 0.00 4.52
374 375 0.738975 CCGATCGAGAACTGTAGCCA 59.261 55.000 18.66 0.00 0.00 4.75
375 376 0.030908 CCCGATCGAGAACTGTAGCC 59.969 60.000 18.66 0.00 0.00 3.93
376 377 0.739561 ACCCGATCGAGAACTGTAGC 59.260 55.000 18.66 0.00 0.00 3.58
377 378 2.290464 AGACCCGATCGAGAACTGTAG 58.710 52.381 18.66 0.00 0.00 2.74
378 379 2.414994 AGACCCGATCGAGAACTGTA 57.585 50.000 18.66 0.00 0.00 2.74
379 380 1.546961 AAGACCCGATCGAGAACTGT 58.453 50.000 18.66 3.44 0.00 3.55
380 381 2.656560 AAAGACCCGATCGAGAACTG 57.343 50.000 18.66 0.00 0.00 3.16
381 382 5.340439 AAATAAAGACCCGATCGAGAACT 57.660 39.130 18.66 5.99 0.00 3.01
382 383 5.220605 CCAAAATAAAGACCCGATCGAGAAC 60.221 44.000 18.66 3.56 0.00 3.01
383 384 4.873827 CCAAAATAAAGACCCGATCGAGAA 59.126 41.667 18.66 0.00 0.00 2.87
384 385 4.160814 TCCAAAATAAAGACCCGATCGAGA 59.839 41.667 18.66 0.00 0.00 4.04
385 386 4.270325 GTCCAAAATAAAGACCCGATCGAG 59.730 45.833 18.66 5.68 0.00 4.04
386 387 4.186159 GTCCAAAATAAAGACCCGATCGA 58.814 43.478 18.66 0.00 0.00 3.59
387 388 3.311596 GGTCCAAAATAAAGACCCGATCG 59.688 47.826 8.51 8.51 43.60 3.69
388 389 4.895224 GGTCCAAAATAAAGACCCGATC 57.105 45.455 0.00 0.00 43.60 3.69
394 395 7.660208 TGAGAACTGTAGGTCCAAAATAAAGAC 59.340 37.037 0.00 0.00 0.00 3.01
395 396 7.741785 TGAGAACTGTAGGTCCAAAATAAAGA 58.258 34.615 0.00 0.00 0.00 2.52
396 397 7.979444 TGAGAACTGTAGGTCCAAAATAAAG 57.021 36.000 0.00 0.00 0.00 1.85
397 398 8.934023 ATTGAGAACTGTAGGTCCAAAATAAA 57.066 30.769 0.00 0.00 0.00 1.40
398 399 7.333423 CGATTGAGAACTGTAGGTCCAAAATAA 59.667 37.037 0.00 0.00 0.00 1.40
399 400 6.816640 CGATTGAGAACTGTAGGTCCAAAATA 59.183 38.462 0.00 0.00 0.00 1.40
400 401 5.643777 CGATTGAGAACTGTAGGTCCAAAAT 59.356 40.000 0.00 0.00 0.00 1.82
401 402 4.994852 CGATTGAGAACTGTAGGTCCAAAA 59.005 41.667 0.00 0.00 0.00 2.44
402 403 4.562757 CCGATTGAGAACTGTAGGTCCAAA 60.563 45.833 0.00 0.00 0.00 3.28
403 404 3.056107 CCGATTGAGAACTGTAGGTCCAA 60.056 47.826 0.00 0.00 0.00 3.53
404 405 2.496070 CCGATTGAGAACTGTAGGTCCA 59.504 50.000 0.00 0.00 0.00 4.02
405 406 2.159085 CCCGATTGAGAACTGTAGGTCC 60.159 54.545 0.00 0.00 0.00 4.46
406 407 2.738964 GCCCGATTGAGAACTGTAGGTC 60.739 54.545 0.00 0.00 0.00 3.85
407 408 1.207329 GCCCGATTGAGAACTGTAGGT 59.793 52.381 0.00 0.00 0.00 3.08
408 409 1.473434 GGCCCGATTGAGAACTGTAGG 60.473 57.143 0.00 0.00 0.00 3.18
409 410 1.802880 CGGCCCGATTGAGAACTGTAG 60.803 57.143 0.00 0.00 0.00 2.74
410 411 0.174845 CGGCCCGATTGAGAACTGTA 59.825 55.000 0.00 0.00 0.00 2.74
411 412 1.079127 CGGCCCGATTGAGAACTGT 60.079 57.895 0.00 0.00 0.00 3.55
412 413 1.815421 CCGGCCCGATTGAGAACTG 60.815 63.158 3.71 0.00 0.00 3.16
413 414 2.584608 CCGGCCCGATTGAGAACT 59.415 61.111 3.71 0.00 0.00 3.01
414 415 3.202706 GCCGGCCCGATTGAGAAC 61.203 66.667 18.11 0.00 0.00 3.01
415 416 4.483243 GGCCGGCCCGATTGAGAA 62.483 66.667 36.64 0.00 0.00 2.87
425 426 2.438795 TTTACGATTGGGCCGGCC 60.439 61.111 38.57 38.57 0.00 6.13
426 427 2.767445 GGTTTACGATTGGGCCGGC 61.767 63.158 21.18 21.18 0.00 6.13
427 428 3.504927 GGTTTACGATTGGGCCGG 58.495 61.111 0.00 0.00 0.00 6.13
461 462 3.691744 CTCTCTGCGGCAGGTCGTC 62.692 68.421 28.18 0.00 31.51 4.20
462 463 3.753434 CTCTCTGCGGCAGGTCGT 61.753 66.667 28.18 0.00 31.51 4.34
472 473 2.105930 CTACCTGCCGCTCTCTGC 59.894 66.667 0.00 0.00 38.57 4.26
473 474 1.733402 CTCCTACCTGCCGCTCTCTG 61.733 65.000 0.00 0.00 0.00 3.35
474 475 1.454847 CTCCTACCTGCCGCTCTCT 60.455 63.158 0.00 0.00 0.00 3.10
475 476 3.124686 CTCCTACCTGCCGCTCTC 58.875 66.667 0.00 0.00 0.00 3.20
476 477 3.151022 GCTCCTACCTGCCGCTCT 61.151 66.667 0.00 0.00 0.00 4.09
477 478 3.145422 GAGCTCCTACCTGCCGCTC 62.145 68.421 0.87 0.00 40.07 5.03
478 479 3.151022 GAGCTCCTACCTGCCGCT 61.151 66.667 0.87 0.00 0.00 5.52
479 480 4.228567 GGAGCTCCTACCTGCCGC 62.229 72.222 26.25 0.00 0.00 6.53
480 481 3.541713 GGGAGCTCCTACCTGCCG 61.542 72.222 31.36 0.00 30.17 5.69
481 482 3.164977 GGGGAGCTCCTACCTGCC 61.165 72.222 31.36 19.18 39.80 4.85
482 483 1.348775 ATTGGGGAGCTCCTACCTGC 61.349 60.000 31.36 14.00 34.20 4.85
483 484 1.216990 AATTGGGGAGCTCCTACCTG 58.783 55.000 31.36 0.00 34.20 4.00
484 485 1.847088 GAAATTGGGGAGCTCCTACCT 59.153 52.381 31.36 12.17 34.20 3.08
485 486 1.847088 AGAAATTGGGGAGCTCCTACC 59.153 52.381 31.36 24.53 32.58 3.18
486 487 2.505819 TCAGAAATTGGGGAGCTCCTAC 59.494 50.000 31.36 23.77 35.95 3.18
487 488 2.845659 TCAGAAATTGGGGAGCTCCTA 58.154 47.619 31.36 18.38 35.95 2.94
488 489 1.673767 TCAGAAATTGGGGAGCTCCT 58.326 50.000 31.36 11.45 35.95 3.69
489 490 2.095461 GTTCAGAAATTGGGGAGCTCC 58.905 52.381 25.59 25.59 0.00 4.70
490 491 2.751806 CTGTTCAGAAATTGGGGAGCTC 59.248 50.000 4.71 4.71 0.00 4.09
491 492 2.376518 TCTGTTCAGAAATTGGGGAGCT 59.623 45.455 0.00 0.00 0.00 4.09
492 493 2.795329 TCTGTTCAGAAATTGGGGAGC 58.205 47.619 0.00 0.00 0.00 4.70
493 494 4.639310 CAGATCTGTTCAGAAATTGGGGAG 59.361 45.833 14.95 0.00 0.00 4.30
494 495 4.043310 ACAGATCTGTTCAGAAATTGGGGA 59.957 41.667 22.89 0.00 41.83 4.81
495 496 4.338879 ACAGATCTGTTCAGAAATTGGGG 58.661 43.478 22.89 0.00 41.83 4.96
509 510 3.055530 ACAGCAGGAACCTAACAGATCTG 60.056 47.826 21.37 21.37 0.00 2.90
510 511 3.177228 ACAGCAGGAACCTAACAGATCT 58.823 45.455 0.00 0.00 0.00 2.75
511 512 3.618690 ACAGCAGGAACCTAACAGATC 57.381 47.619 0.00 0.00 0.00 2.75
512 513 5.013183 ACTTAACAGCAGGAACCTAACAGAT 59.987 40.000 0.00 0.00 0.00 2.90
513 514 4.347000 ACTTAACAGCAGGAACCTAACAGA 59.653 41.667 0.00 0.00 0.00 3.41
514 515 4.452455 CACTTAACAGCAGGAACCTAACAG 59.548 45.833 0.00 0.00 0.00 3.16
515 516 4.385825 CACTTAACAGCAGGAACCTAACA 58.614 43.478 0.00 0.00 0.00 2.41
516 517 3.751698 CCACTTAACAGCAGGAACCTAAC 59.248 47.826 0.00 0.00 0.00 2.34
517 518 3.649023 TCCACTTAACAGCAGGAACCTAA 59.351 43.478 0.00 0.00 0.00 2.69
518 519 3.007614 GTCCACTTAACAGCAGGAACCTA 59.992 47.826 0.00 0.00 31.18 3.08
519 520 2.054799 TCCACTTAACAGCAGGAACCT 58.945 47.619 0.00 0.00 0.00 3.50
520 521 2.152016 GTCCACTTAACAGCAGGAACC 58.848 52.381 0.00 0.00 31.18 3.62
521 522 1.798813 CGTCCACTTAACAGCAGGAAC 59.201 52.381 0.00 0.00 31.18 3.62
522 523 1.689813 TCGTCCACTTAACAGCAGGAA 59.310 47.619 0.00 0.00 31.18 3.36
523 524 1.334160 TCGTCCACTTAACAGCAGGA 58.666 50.000 0.00 0.00 0.00 3.86
524 525 2.163818 TTCGTCCACTTAACAGCAGG 57.836 50.000 0.00 0.00 0.00 4.85
525 526 2.345641 CGATTCGTCCACTTAACAGCAG 59.654 50.000 0.00 0.00 0.00 4.24
526 527 2.029739 TCGATTCGTCCACTTAACAGCA 60.030 45.455 5.89 0.00 0.00 4.41
527 528 2.602878 TCGATTCGTCCACTTAACAGC 58.397 47.619 5.89 0.00 0.00 4.40
528 529 3.797256 GGATCGATTCGTCCACTTAACAG 59.203 47.826 17.31 0.00 34.57 3.16
529 530 3.429822 GGGATCGATTCGTCCACTTAACA 60.430 47.826 21.18 0.00 36.19 2.41
530 531 3.121544 GGGATCGATTCGTCCACTTAAC 58.878 50.000 21.18 6.74 36.19 2.01
531 532 2.223641 CGGGATCGATTCGTCCACTTAA 60.224 50.000 21.18 0.00 39.00 1.85
532 533 1.335810 CGGGATCGATTCGTCCACTTA 59.664 52.381 21.18 0.00 39.00 2.24
533 534 0.102481 CGGGATCGATTCGTCCACTT 59.898 55.000 21.18 0.00 39.00 3.16
565 566 3.225104 GAAATGGGCATATGGAAGAGCA 58.775 45.455 4.56 0.00 0.00 4.26
610 612 3.640407 AGGCTCCACACCGCATGT 61.640 61.111 0.00 0.00 44.81 3.21
615 617 1.669115 CAAGTCAGGCTCCACACCG 60.669 63.158 0.00 0.00 0.00 4.94
653 656 7.993101 TGAATCATTCTCAAGAATCAATGGTC 58.007 34.615 2.24 0.00 42.41 4.02
754 764 0.465824 AGAGTAGGTATGGCGCGTCT 60.466 55.000 13.81 0.00 0.00 4.18
755 765 0.317938 CAGAGTAGGTATGGCGCGTC 60.318 60.000 2.29 2.29 0.00 5.19
757 767 1.661821 GCAGAGTAGGTATGGCGCG 60.662 63.158 0.00 0.00 0.00 6.86
758 768 1.661821 CGCAGAGTAGGTATGGCGC 60.662 63.158 0.00 0.00 37.96 6.53
759 769 1.661821 GCGCAGAGTAGGTATGGCG 60.662 63.158 0.30 0.00 46.47 5.69
760 770 1.301009 GGCGCAGAGTAGGTATGGC 60.301 63.158 10.83 0.00 0.00 4.40
773 783 2.685387 AAAACATTTTCCGCGGCGCA 62.685 50.000 32.61 12.57 0.00 6.09
805 850 2.146342 CAAGCTCCCAACTGTACTGTG 58.854 52.381 6.13 1.46 0.00 3.66
978 1023 9.500785 CCCATGGTAAAAAGATTATTTTTGTGT 57.499 29.630 11.73 0.00 34.51 3.72
1500 1549 2.471084 ATCCGTCCCCCTTCACCAGA 62.471 60.000 0.00 0.00 0.00 3.86
1645 1694 2.604046 ATTCTCCACTCGGTGCATAC 57.396 50.000 0.00 0.00 31.34 2.39
1798 1868 9.139174 TCTTCATGAAAAGTTTGTGTTTCTTTC 57.861 29.630 9.88 0.00 35.26 2.62
1961 2062 5.216622 TGCACCTTATATGTTACTCCCTCT 58.783 41.667 0.00 0.00 0.00 3.69
2024 2132 6.950860 TGGGATATTCATGGCACTAGATAA 57.049 37.500 0.00 0.00 0.00 1.75
2170 2279 2.355716 GCTGGGTAAGGTTACTGATGCA 60.356 50.000 0.00 0.00 34.16 3.96
2179 2288 2.594131 GGAACTTTGCTGGGTAAGGTT 58.406 47.619 0.00 0.00 31.38 3.50
2203 2312 8.434733 AAGAGAAGGTACTGAAAACAAGTTAC 57.565 34.615 0.00 0.00 40.86 2.50
2336 2445 1.002366 GTTGCGACATCTTCAGCGAT 58.998 50.000 0.00 0.00 0.00 4.58
2362 2471 2.335316 TGTTGTGAGTTGTGGTACCC 57.665 50.000 10.07 1.05 0.00 3.69
2466 2575 4.987912 GTCTTAGATTTGGCTGCTAGCTAG 59.012 45.833 16.84 16.84 41.99 3.42
2467 2576 4.405680 TGTCTTAGATTTGGCTGCTAGCTA 59.594 41.667 17.23 1.31 41.99 3.32
2493 2622 7.498900 TGCAGGTGTATATTACCTCTCAAATTG 59.501 37.037 8.29 0.00 45.19 2.32
2530 2663 2.482374 CTTTGGCTGCTAGCGTGC 59.518 61.111 20.05 20.05 43.62 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.