Multiple sequence alignment - TraesCS3D01G172700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G172700 chr3D 100.000 2681 0 0 1 2681 153091030 153088350 0.000000e+00 4951
1 TraesCS3D01G172700 chr3D 81.116 233 35 8 202 427 299266516 299266746 7.630000e-41 178
2 TraesCS3D01G172700 chr3A 92.584 2171 77 34 469 2586 177086576 177088715 0.000000e+00 3040
3 TraesCS3D01G172700 chr3B 92.424 2125 74 30 566 2642 224428672 224426587 0.000000e+00 2952
4 TraesCS3D01G172700 chr6B 89.024 246 18 1 1181 1417 655148131 655148376 2.020000e-76 296
5 TraesCS3D01G172700 chr6B 88.211 246 20 1 1181 1417 655182301 655182546 4.370000e-73 285
6 TraesCS3D01G172700 chr7B 82.927 246 17 5 1181 1417 740683038 740682809 5.850000e-47 198
7 TraesCS3D01G172700 chr7B 82.243 214 30 7 219 427 298504710 298504500 7.630000e-41 178
8 TraesCS3D01G172700 chr7D 83.178 214 28 7 219 427 271093355 271093565 3.520000e-44 189
9 TraesCS3D01G172700 chr7D 81.034 232 36 8 201 427 325847963 325848191 7.630000e-41 178
10 TraesCS3D01G172700 chr4B 81.897 232 33 8 202 427 165185789 165186017 1.270000e-43 187
11 TraesCS3D01G172700 chr5A 81.545 233 34 8 201 427 208094306 208094535 1.640000e-42 183
12 TraesCS3D01G172700 chr1B 82.710 214 30 5 219 427 393734685 393734474 1.640000e-42 183
13 TraesCS3D01G172700 chr6D 80.769 234 37 6 200 427 25991705 25991474 2.740000e-40 176
14 TraesCS3D01G172700 chr6A 81.034 232 35 9 202 427 420654393 420654621 2.740000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G172700 chr3D 153088350 153091030 2680 True 4951 4951 100.000 1 2681 1 chr3D.!!$R1 2680
1 TraesCS3D01G172700 chr3A 177086576 177088715 2139 False 3040 3040 92.584 469 2586 1 chr3A.!!$F1 2117
2 TraesCS3D01G172700 chr3B 224426587 224428672 2085 True 2952 2952 92.424 566 2642 1 chr3B.!!$R1 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.179124 GCCCAAGTTTGCGTGACAAA 60.179 50.0 0.0 0.0 46.01 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2169 2241 0.035439 TCGCAAATTCTCCTGTCCCC 60.035 55.0 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.061509 TCATCATGAAGTGGCCCATG 57.938 50.000 12.16 12.16 40.97 3.66
20 21 1.037493 CATCATGAAGTGGCCCATGG 58.963 55.000 16.71 4.14 40.26 3.66
21 22 0.928505 ATCATGAAGTGGCCCATGGA 59.071 50.000 15.22 6.96 40.26 3.41
22 23 0.928505 TCATGAAGTGGCCCATGGAT 59.071 50.000 15.22 0.00 40.26 3.41
23 24 1.133699 TCATGAAGTGGCCCATGGATC 60.134 52.381 15.22 5.26 40.26 3.36
24 25 1.133575 CATGAAGTGGCCCATGGATCT 60.134 52.381 15.22 2.68 37.19 2.75
25 26 1.002069 TGAAGTGGCCCATGGATCTT 58.998 50.000 15.22 11.40 0.00 2.40
26 27 1.341285 TGAAGTGGCCCATGGATCTTG 60.341 52.381 15.22 0.00 0.00 3.02
27 28 0.685458 AAGTGGCCCATGGATCTTGC 60.685 55.000 15.22 7.42 0.00 4.01
28 29 1.076485 GTGGCCCATGGATCTTGCT 60.076 57.895 15.22 0.00 0.00 3.91
29 30 1.076559 TGGCCCATGGATCTTGCTG 60.077 57.895 15.22 0.00 0.00 4.41
30 31 2.496291 GGCCCATGGATCTTGCTGC 61.496 63.158 15.22 4.92 0.00 5.25
31 32 1.755395 GCCCATGGATCTTGCTGCA 60.755 57.895 15.22 0.00 0.00 4.41
32 33 2.012902 GCCCATGGATCTTGCTGCAC 62.013 60.000 15.22 0.00 0.00 4.57
33 34 0.395311 CCCATGGATCTTGCTGCACT 60.395 55.000 15.22 0.00 0.00 4.40
34 35 1.471119 CCATGGATCTTGCTGCACTT 58.529 50.000 5.56 0.00 0.00 3.16
35 36 1.404391 CCATGGATCTTGCTGCACTTC 59.596 52.381 5.56 0.00 0.00 3.01
36 37 2.366533 CATGGATCTTGCTGCACTTCT 58.633 47.619 0.00 0.00 0.00 2.85
37 38 2.574006 TGGATCTTGCTGCACTTCTT 57.426 45.000 0.00 0.00 0.00 2.52
38 39 2.867624 TGGATCTTGCTGCACTTCTTT 58.132 42.857 0.00 0.00 0.00 2.52
39 40 3.225104 TGGATCTTGCTGCACTTCTTTT 58.775 40.909 0.00 0.00 0.00 2.27
40 41 4.397420 TGGATCTTGCTGCACTTCTTTTA 58.603 39.130 0.00 0.00 0.00 1.52
41 42 4.216257 TGGATCTTGCTGCACTTCTTTTAC 59.784 41.667 0.00 0.00 0.00 2.01
42 43 3.878086 TCTTGCTGCACTTCTTTTACG 57.122 42.857 0.00 0.00 0.00 3.18
43 44 2.548057 TCTTGCTGCACTTCTTTTACGG 59.452 45.455 0.00 0.00 0.00 4.02
44 45 1.961793 TGCTGCACTTCTTTTACGGT 58.038 45.000 0.00 0.00 0.00 4.83
45 46 2.294074 TGCTGCACTTCTTTTACGGTT 58.706 42.857 0.00 0.00 0.00 4.44
46 47 2.032799 TGCTGCACTTCTTTTACGGTTG 59.967 45.455 0.00 0.00 0.00 3.77
47 48 2.650608 CTGCACTTCTTTTACGGTTGC 58.349 47.619 0.00 0.00 0.00 4.17
48 49 2.017782 TGCACTTCTTTTACGGTTGCA 58.982 42.857 0.00 0.00 0.00 4.08
49 50 2.621055 TGCACTTCTTTTACGGTTGCAT 59.379 40.909 0.00 0.00 0.00 3.96
50 51 3.815962 TGCACTTCTTTTACGGTTGCATA 59.184 39.130 0.00 0.00 0.00 3.14
51 52 4.457603 TGCACTTCTTTTACGGTTGCATAT 59.542 37.500 0.00 0.00 0.00 1.78
52 53 5.048364 TGCACTTCTTTTACGGTTGCATATT 60.048 36.000 0.00 0.00 0.00 1.28
53 54 5.861787 GCACTTCTTTTACGGTTGCATATTT 59.138 36.000 0.00 0.00 0.00 1.40
54 55 7.024768 GCACTTCTTTTACGGTTGCATATTTA 58.975 34.615 0.00 0.00 0.00 1.40
55 56 7.700656 GCACTTCTTTTACGGTTGCATATTTAT 59.299 33.333 0.00 0.00 0.00 1.40
56 57 9.567848 CACTTCTTTTACGGTTGCATATTTATT 57.432 29.630 0.00 0.00 0.00 1.40
106 107 5.841957 AAAAACTCAGCACTCAGAAACAT 57.158 34.783 0.00 0.00 0.00 2.71
107 108 5.429957 AAAACTCAGCACTCAGAAACATC 57.570 39.130 0.00 0.00 0.00 3.06
108 109 3.758755 ACTCAGCACTCAGAAACATCA 57.241 42.857 0.00 0.00 0.00 3.07
109 110 4.283363 ACTCAGCACTCAGAAACATCAT 57.717 40.909 0.00 0.00 0.00 2.45
110 111 4.649692 ACTCAGCACTCAGAAACATCATT 58.350 39.130 0.00 0.00 0.00 2.57
111 112 4.454847 ACTCAGCACTCAGAAACATCATTG 59.545 41.667 0.00 0.00 0.00 2.82
112 113 4.392047 TCAGCACTCAGAAACATCATTGT 58.608 39.130 0.00 0.00 37.82 2.71
114 115 5.997129 TCAGCACTCAGAAACATCATTGTTA 59.003 36.000 0.00 0.00 45.30 2.41
115 116 6.656270 TCAGCACTCAGAAACATCATTGTTAT 59.344 34.615 0.00 0.00 45.30 1.89
116 117 7.175467 TCAGCACTCAGAAACATCATTGTTATT 59.825 33.333 0.00 0.00 45.30 1.40
117 118 8.453320 CAGCACTCAGAAACATCATTGTTATTA 58.547 33.333 0.00 0.00 45.30 0.98
118 119 9.182214 AGCACTCAGAAACATCATTGTTATTAT 57.818 29.630 0.00 0.00 45.30 1.28
119 120 9.229784 GCACTCAGAAACATCATTGTTATTATG 57.770 33.333 0.00 0.00 45.30 1.90
125 126 9.669353 AGAAACATCATTGTTATTATGAATCGC 57.331 29.630 0.00 0.00 45.30 4.58
126 127 8.801715 AAACATCATTGTTATTATGAATCGCC 57.198 30.769 0.00 0.00 45.30 5.54
127 128 7.750229 ACATCATTGTTATTATGAATCGCCT 57.250 32.000 0.00 0.00 35.77 5.52
128 129 8.846943 ACATCATTGTTATTATGAATCGCCTA 57.153 30.769 0.00 0.00 35.77 3.93
129 130 8.721478 ACATCATTGTTATTATGAATCGCCTAC 58.279 33.333 0.00 0.00 35.77 3.18
130 131 8.939929 CATCATTGTTATTATGAATCGCCTACT 58.060 33.333 0.00 0.00 35.77 2.57
131 132 8.310406 TCATTGTTATTATGAATCGCCTACTG 57.690 34.615 0.00 0.00 0.00 2.74
132 133 8.147704 TCATTGTTATTATGAATCGCCTACTGA 58.852 33.333 0.00 0.00 0.00 3.41
133 134 8.939929 CATTGTTATTATGAATCGCCTACTGAT 58.060 33.333 0.00 0.00 0.00 2.90
134 135 8.902540 TTGTTATTATGAATCGCCTACTGATT 57.097 30.769 0.00 0.00 38.71 2.57
138 139 2.795175 GAATCGCCTACTGATTCCGA 57.205 50.000 4.73 0.00 43.73 4.55
139 140 2.395654 GAATCGCCTACTGATTCCGAC 58.604 52.381 4.73 0.00 43.73 4.79
140 141 1.693627 ATCGCCTACTGATTCCGACT 58.306 50.000 0.00 0.00 0.00 4.18
141 142 1.471119 TCGCCTACTGATTCCGACTT 58.529 50.000 0.00 0.00 0.00 3.01
142 143 1.822990 TCGCCTACTGATTCCGACTTT 59.177 47.619 0.00 0.00 0.00 2.66
143 144 3.018856 TCGCCTACTGATTCCGACTTTA 58.981 45.455 0.00 0.00 0.00 1.85
144 145 3.635373 TCGCCTACTGATTCCGACTTTAT 59.365 43.478 0.00 0.00 0.00 1.40
145 146 3.982058 CGCCTACTGATTCCGACTTTATC 59.018 47.826 0.00 0.00 0.00 1.75
158 159 3.546670 CGACTTTATCGTTGACACCTAGC 59.453 47.826 0.00 0.00 46.25 3.42
159 160 4.491676 GACTTTATCGTTGACACCTAGCA 58.508 43.478 0.00 0.00 0.00 3.49
160 161 5.086104 ACTTTATCGTTGACACCTAGCAT 57.914 39.130 0.00 0.00 0.00 3.79
161 162 4.870426 ACTTTATCGTTGACACCTAGCATG 59.130 41.667 0.00 0.00 0.00 4.06
162 163 4.729227 TTATCGTTGACACCTAGCATGA 57.271 40.909 0.00 0.00 0.00 3.07
163 164 3.610040 ATCGTTGACACCTAGCATGAA 57.390 42.857 0.00 0.00 0.00 2.57
164 165 2.683968 TCGTTGACACCTAGCATGAAC 58.316 47.619 0.00 0.00 0.00 3.18
165 166 2.036604 TCGTTGACACCTAGCATGAACA 59.963 45.455 0.00 0.00 0.00 3.18
166 167 3.002791 CGTTGACACCTAGCATGAACAT 58.997 45.455 0.00 0.00 0.00 2.71
167 168 3.181517 CGTTGACACCTAGCATGAACATG 60.182 47.826 10.04 10.04 41.60 3.21
168 169 3.979101 TGACACCTAGCATGAACATGA 57.021 42.857 17.40 0.00 41.20 3.07
169 170 3.599343 TGACACCTAGCATGAACATGAC 58.401 45.455 17.40 9.31 41.20 3.06
170 171 2.604914 GACACCTAGCATGAACATGACG 59.395 50.000 17.40 5.51 41.20 4.35
171 172 1.328680 CACCTAGCATGAACATGACGC 59.671 52.381 17.40 3.64 41.20 5.19
172 173 0.578683 CCTAGCATGAACATGACGCG 59.421 55.000 17.40 3.53 41.20 6.01
173 174 1.280982 CTAGCATGAACATGACGCGT 58.719 50.000 13.85 13.85 41.20 6.01
174 175 0.998669 TAGCATGAACATGACGCGTG 59.001 50.000 20.70 4.68 41.20 5.34
175 176 0.670239 AGCATGAACATGACGCGTGA 60.670 50.000 20.70 9.63 41.20 4.35
176 177 0.374758 GCATGAACATGACGCGTGAT 59.625 50.000 20.70 12.45 41.20 3.06
177 178 1.202065 GCATGAACATGACGCGTGATT 60.202 47.619 20.70 0.00 41.20 2.57
178 179 2.728846 GCATGAACATGACGCGTGATTT 60.729 45.455 20.70 11.17 41.20 2.17
179 180 3.491356 CATGAACATGACGCGTGATTTT 58.509 40.909 20.70 14.35 41.20 1.82
180 181 4.646960 CATGAACATGACGCGTGATTTTA 58.353 39.130 20.70 8.42 41.20 1.52
181 182 4.733972 TGAACATGACGCGTGATTTTAA 57.266 36.364 20.70 2.76 0.00 1.52
182 183 4.459606 TGAACATGACGCGTGATTTTAAC 58.540 39.130 20.70 2.66 0.00 2.01
183 184 4.024809 TGAACATGACGCGTGATTTTAACA 60.025 37.500 20.70 5.85 0.00 2.41
184 185 4.475763 ACATGACGCGTGATTTTAACAA 57.524 36.364 20.70 0.00 0.00 2.83
185 186 4.463209 ACATGACGCGTGATTTTAACAAG 58.537 39.130 20.70 5.12 0.00 3.16
186 187 3.529634 TGACGCGTGATTTTAACAAGG 57.470 42.857 20.70 0.00 0.00 3.61
187 188 2.873472 TGACGCGTGATTTTAACAAGGT 59.127 40.909 20.70 0.00 0.00 3.50
188 189 3.223157 GACGCGTGATTTTAACAAGGTG 58.777 45.455 20.70 0.00 0.00 4.00
189 190 2.873472 ACGCGTGATTTTAACAAGGTGA 59.127 40.909 12.93 0.00 0.00 4.02
190 191 3.500680 ACGCGTGATTTTAACAAGGTGAT 59.499 39.130 12.93 0.00 0.00 3.06
191 192 4.088648 CGCGTGATTTTAACAAGGTGATC 58.911 43.478 0.00 0.00 0.00 2.92
192 193 4.088648 GCGTGATTTTAACAAGGTGATCG 58.911 43.478 0.00 0.00 0.00 3.69
193 194 4.142988 GCGTGATTTTAACAAGGTGATCGA 60.143 41.667 0.00 0.00 0.00 3.59
194 195 5.615984 GCGTGATTTTAACAAGGTGATCGAA 60.616 40.000 0.00 0.00 0.00 3.71
195 196 6.015504 CGTGATTTTAACAAGGTGATCGAAG 58.984 40.000 0.00 0.00 0.00 3.79
196 197 6.128661 CGTGATTTTAACAAGGTGATCGAAGA 60.129 38.462 0.00 0.00 45.75 2.87
197 198 7.413000 CGTGATTTTAACAAGGTGATCGAAGAT 60.413 37.037 0.00 0.00 45.12 2.40
198 199 7.905493 GTGATTTTAACAAGGTGATCGAAGATC 59.095 37.037 3.26 3.26 45.12 2.75
199 200 7.606073 TGATTTTAACAAGGTGATCGAAGATCA 59.394 33.333 8.48 8.48 45.12 2.92
200 201 7.737972 TTTTAACAAGGTGATCGAAGATCAA 57.262 32.000 13.51 0.00 45.12 2.57
201 202 7.921786 TTTAACAAGGTGATCGAAGATCAAT 57.078 32.000 13.51 4.20 45.12 2.57
202 203 9.443323 TTTTAACAAGGTGATCGAAGATCAATA 57.557 29.630 13.51 0.54 45.12 1.90
203 204 6.910536 AACAAGGTGATCGAAGATCAATAC 57.089 37.500 13.51 8.00 45.12 1.89
204 205 6.227298 ACAAGGTGATCGAAGATCAATACT 57.773 37.500 13.51 9.80 45.12 2.12
205 206 6.276847 ACAAGGTGATCGAAGATCAATACTC 58.723 40.000 13.51 2.45 45.12 2.59
206 207 5.461032 AGGTGATCGAAGATCAATACTCC 57.539 43.478 13.51 10.37 45.12 3.85
207 208 4.282195 AGGTGATCGAAGATCAATACTCCC 59.718 45.833 13.51 9.77 45.12 4.30
208 209 4.039245 GGTGATCGAAGATCAATACTCCCA 59.961 45.833 13.51 0.00 45.12 4.37
209 210 4.985409 GTGATCGAAGATCAATACTCCCAC 59.015 45.833 13.51 0.00 45.12 4.61
210 211 4.039245 TGATCGAAGATCAATACTCCCACC 59.961 45.833 9.96 0.00 45.12 4.61
211 212 3.371034 TCGAAGATCAATACTCCCACCA 58.629 45.455 0.00 0.00 0.00 4.17
212 213 3.967326 TCGAAGATCAATACTCCCACCAT 59.033 43.478 0.00 0.00 0.00 3.55
213 214 4.408921 TCGAAGATCAATACTCCCACCATT 59.591 41.667 0.00 0.00 0.00 3.16
214 215 4.512944 CGAAGATCAATACTCCCACCATTG 59.487 45.833 0.00 0.00 0.00 2.82
215 216 5.440610 GAAGATCAATACTCCCACCATTGT 58.559 41.667 0.00 0.00 32.64 2.71
216 217 5.456921 AGATCAATACTCCCACCATTGTT 57.543 39.130 0.00 0.00 32.64 2.83
217 218 5.195940 AGATCAATACTCCCACCATTGTTG 58.804 41.667 0.00 0.00 32.64 3.33
218 219 4.380843 TCAATACTCCCACCATTGTTGT 57.619 40.909 0.00 0.00 32.64 3.32
219 220 4.735369 TCAATACTCCCACCATTGTTGTT 58.265 39.130 0.00 0.00 32.64 2.83
220 221 5.882040 TCAATACTCCCACCATTGTTGTTA 58.118 37.500 0.00 0.00 32.64 2.41
221 222 5.708230 TCAATACTCCCACCATTGTTGTTAC 59.292 40.000 0.00 0.00 32.64 2.50
222 223 2.500229 ACTCCCACCATTGTTGTTACG 58.500 47.619 0.00 0.00 0.00 3.18
223 224 2.158726 ACTCCCACCATTGTTGTTACGT 60.159 45.455 0.00 0.00 0.00 3.57
224 225 2.482721 CTCCCACCATTGTTGTTACGTC 59.517 50.000 0.00 0.00 0.00 4.34
225 226 1.195900 CCCACCATTGTTGTTACGTCG 59.804 52.381 0.00 0.00 0.00 5.12
226 227 1.195900 CCACCATTGTTGTTACGTCGG 59.804 52.381 0.00 0.00 0.00 4.79
227 228 0.869730 ACCATTGTTGTTACGTCGGC 59.130 50.000 0.00 0.00 0.00 5.54
228 229 0.869068 CCATTGTTGTTACGTCGGCA 59.131 50.000 0.00 0.00 0.00 5.69
229 230 1.466950 CCATTGTTGTTACGTCGGCAT 59.533 47.619 0.00 0.00 0.00 4.40
230 231 2.673862 CCATTGTTGTTACGTCGGCATA 59.326 45.455 0.00 0.00 0.00 3.14
231 232 3.311322 CCATTGTTGTTACGTCGGCATAT 59.689 43.478 0.00 0.00 0.00 1.78
232 233 4.201871 CCATTGTTGTTACGTCGGCATATT 60.202 41.667 0.00 0.00 0.00 1.28
233 234 5.006844 CCATTGTTGTTACGTCGGCATATTA 59.993 40.000 0.00 0.00 0.00 0.98
234 235 5.705813 TTGTTGTTACGTCGGCATATTAG 57.294 39.130 0.00 0.00 0.00 1.73
235 236 4.746729 TGTTGTTACGTCGGCATATTAGT 58.253 39.130 0.00 0.00 0.00 2.24
236 237 5.170021 TGTTGTTACGTCGGCATATTAGTT 58.830 37.500 0.00 0.00 0.00 2.24
237 238 5.638657 TGTTGTTACGTCGGCATATTAGTTT 59.361 36.000 0.00 0.00 0.00 2.66
238 239 6.147492 TGTTGTTACGTCGGCATATTAGTTTT 59.853 34.615 0.00 0.00 0.00 2.43
239 240 6.097156 TGTTACGTCGGCATATTAGTTTTG 57.903 37.500 0.00 0.00 0.00 2.44
240 241 5.638657 TGTTACGTCGGCATATTAGTTTTGT 59.361 36.000 0.00 0.00 0.00 2.83
241 242 6.147492 TGTTACGTCGGCATATTAGTTTTGTT 59.853 34.615 0.00 0.00 0.00 2.83
242 243 5.616488 ACGTCGGCATATTAGTTTTGTTT 57.384 34.783 0.00 0.00 0.00 2.83
243 244 6.724694 ACGTCGGCATATTAGTTTTGTTTA 57.275 33.333 0.00 0.00 0.00 2.01
244 245 6.768078 ACGTCGGCATATTAGTTTTGTTTAG 58.232 36.000 0.00 0.00 0.00 1.85
245 246 6.591062 ACGTCGGCATATTAGTTTTGTTTAGA 59.409 34.615 0.00 0.00 0.00 2.10
246 247 7.117454 CGTCGGCATATTAGTTTTGTTTAGAG 58.883 38.462 0.00 0.00 0.00 2.43
247 248 7.201496 CGTCGGCATATTAGTTTTGTTTAGAGT 60.201 37.037 0.00 0.00 0.00 3.24
248 249 8.448615 GTCGGCATATTAGTTTTGTTTAGAGTT 58.551 33.333 0.00 0.00 0.00 3.01
249 250 9.656040 TCGGCATATTAGTTTTGTTTAGAGTTA 57.344 29.630 0.00 0.00 0.00 2.24
269 270 9.041354 AGAGTTAAAATTTATAAACCATGCCCA 57.959 29.630 0.00 0.00 0.00 5.36
270 271 9.660180 GAGTTAAAATTTATAAACCATGCCCAA 57.340 29.630 0.00 0.00 0.00 4.12
271 272 9.665719 AGTTAAAATTTATAAACCATGCCCAAG 57.334 29.630 0.00 0.00 0.00 3.61
272 273 9.443323 GTTAAAATTTATAAACCATGCCCAAGT 57.557 29.630 0.00 0.00 0.00 3.16
274 275 8.932434 AAAATTTATAAACCATGCCCAAGTTT 57.068 26.923 0.00 3.14 37.47 2.66
275 276 7.920160 AATTTATAAACCATGCCCAAGTTTG 57.080 32.000 0.00 0.00 35.45 2.93
276 277 2.829741 TAAACCATGCCCAAGTTTGC 57.170 45.000 7.13 0.00 35.45 3.68
277 278 0.249826 AAACCATGCCCAAGTTTGCG 60.250 50.000 0.00 0.00 32.67 4.85
278 279 1.398958 AACCATGCCCAAGTTTGCGT 61.399 50.000 0.00 0.00 0.00 5.24
279 280 1.373246 CCATGCCCAAGTTTGCGTG 60.373 57.895 8.69 8.69 42.72 5.34
280 281 1.659233 CATGCCCAAGTTTGCGTGA 59.341 52.632 9.72 0.00 45.22 4.35
281 282 0.664166 CATGCCCAAGTTTGCGTGAC 60.664 55.000 9.72 0.00 45.22 3.67
282 283 1.106351 ATGCCCAAGTTTGCGTGACA 61.106 50.000 0.00 0.00 0.00 3.58
283 284 1.315981 TGCCCAAGTTTGCGTGACAA 61.316 50.000 0.00 0.00 36.13 3.18
284 285 0.179124 GCCCAAGTTTGCGTGACAAA 60.179 50.000 0.00 0.00 46.01 2.83
300 301 9.923786 TGCGTGACAAAATAATAACATATACAC 57.076 29.630 0.00 0.00 0.00 2.90
301 302 9.377383 GCGTGACAAAATAATAACATATACACC 57.623 33.333 0.00 0.00 0.00 4.16
393 394 8.684386 TGTTCATATTGTTTCTAACTTGGTCA 57.316 30.769 0.00 0.00 0.00 4.02
394 395 9.126151 TGTTCATATTGTTTCTAACTTGGTCAA 57.874 29.630 0.00 0.00 0.00 3.18
395 396 9.959749 GTTCATATTGTTTCTAACTTGGTCAAA 57.040 29.630 0.00 0.00 0.00 2.69
396 397 9.959749 TTCATATTGTTTCTAACTTGGTCAAAC 57.040 29.630 0.00 0.00 0.00 2.93
397 398 9.349713 TCATATTGTTTCTAACTTGGTCAAACT 57.650 29.630 0.00 0.00 0.00 2.66
398 399 9.965824 CATATTGTTTCTAACTTGGTCAAACTT 57.034 29.630 0.00 0.00 0.00 2.66
417 418 9.349713 TCAAACTTTATACAATTTGACCTCAGT 57.650 29.630 2.79 0.00 36.42 3.41
418 419 9.612620 CAAACTTTATACAATTTGACCTCAGTC 57.387 33.333 2.79 0.00 43.83 3.51
431 432 5.751243 GACCTCAGTCAAAGCTAAACAAA 57.249 39.130 0.00 0.00 42.99 2.83
432 433 5.752712 GACCTCAGTCAAAGCTAAACAAAG 58.247 41.667 0.00 0.00 42.99 2.77
433 434 4.580580 ACCTCAGTCAAAGCTAAACAAAGG 59.419 41.667 0.00 0.00 0.00 3.11
434 435 4.022849 CCTCAGTCAAAGCTAAACAAAGGG 60.023 45.833 0.00 0.00 0.00 3.95
435 436 4.787551 TCAGTCAAAGCTAAACAAAGGGA 58.212 39.130 0.00 0.00 0.00 4.20
436 437 4.821805 TCAGTCAAAGCTAAACAAAGGGAG 59.178 41.667 0.00 0.00 0.00 4.30
437 438 4.580580 CAGTCAAAGCTAAACAAAGGGAGT 59.419 41.667 0.00 0.00 0.00 3.85
438 439 5.763204 CAGTCAAAGCTAAACAAAGGGAGTA 59.237 40.000 0.00 0.00 0.00 2.59
439 440 5.763698 AGTCAAAGCTAAACAAAGGGAGTAC 59.236 40.000 0.00 0.00 0.00 2.73
440 441 5.048921 GTCAAAGCTAAACAAAGGGAGTACC 60.049 44.000 0.00 0.00 40.67 3.34
441 442 4.717279 AAGCTAAACAAAGGGAGTACCA 57.283 40.909 0.00 0.00 43.89 3.25
442 443 4.017177 AGCTAAACAAAGGGAGTACCAC 57.983 45.455 0.00 0.00 43.89 4.16
443 444 2.740447 GCTAAACAAAGGGAGTACCACG 59.260 50.000 0.00 0.00 43.89 4.94
444 445 3.555586 GCTAAACAAAGGGAGTACCACGA 60.556 47.826 0.00 0.00 43.89 4.35
445 446 2.538512 AACAAAGGGAGTACCACGAC 57.461 50.000 0.00 0.00 43.89 4.34
446 447 1.416243 ACAAAGGGAGTACCACGACA 58.584 50.000 0.00 0.00 43.89 4.35
447 448 1.069668 ACAAAGGGAGTACCACGACAC 59.930 52.381 0.00 0.00 43.89 3.67
448 449 0.683412 AAAGGGAGTACCACGACACC 59.317 55.000 0.00 0.00 43.89 4.16
449 450 1.530013 AAGGGAGTACCACGACACCG 61.530 60.000 0.00 0.00 43.89 4.94
459 460 4.818417 CGACACCGTTGCAACATC 57.182 55.556 28.01 17.51 0.00 3.06
460 461 1.206578 CGACACCGTTGCAACATCC 59.793 57.895 28.01 11.41 0.00 3.51
461 462 1.206578 GACACCGTTGCAACATCCG 59.793 57.895 28.01 14.64 0.00 4.18
462 463 1.503818 GACACCGTTGCAACATCCGT 61.504 55.000 28.01 18.33 0.00 4.69
463 464 1.082169 CACCGTTGCAACATCCGTG 60.082 57.895 28.01 21.51 0.00 4.94
464 465 1.227704 ACCGTTGCAACATCCGTGA 60.228 52.632 28.01 0.00 0.00 4.35
465 466 0.816018 ACCGTTGCAACATCCGTGAA 60.816 50.000 28.01 0.00 0.00 3.18
466 467 0.309302 CCGTTGCAACATCCGTGAAA 59.691 50.000 28.01 0.00 0.00 2.69
467 468 1.268794 CCGTTGCAACATCCGTGAAAA 60.269 47.619 28.01 0.00 0.00 2.29
468 469 2.606795 CCGTTGCAACATCCGTGAAAAT 60.607 45.455 28.01 0.00 0.00 1.82
469 470 3.365465 CCGTTGCAACATCCGTGAAAATA 60.365 43.478 28.01 0.00 0.00 1.40
470 471 3.845775 CGTTGCAACATCCGTGAAAATAG 59.154 43.478 28.01 3.83 0.00 1.73
471 472 4.377943 CGTTGCAACATCCGTGAAAATAGA 60.378 41.667 28.01 0.00 0.00 1.98
472 473 5.457140 GTTGCAACATCCGTGAAAATAGAA 58.543 37.500 24.52 0.00 0.00 2.10
473 474 5.295431 TGCAACATCCGTGAAAATAGAAG 57.705 39.130 0.00 0.00 0.00 2.85
474 475 4.155826 TGCAACATCCGTGAAAATAGAAGG 59.844 41.667 0.00 0.00 0.00 3.46
563 564 3.790123 GCACATTCGCAGATAAAAGGAGC 60.790 47.826 0.00 0.00 35.04 4.70
567 568 6.000219 ACATTCGCAGATAAAAGGAGCATAT 59.000 36.000 0.00 0.00 35.04 1.78
569 570 7.661437 ACATTCGCAGATAAAAGGAGCATATAA 59.339 33.333 0.00 0.00 35.04 0.98
697 715 3.774702 GGCGACGAACCAGCGAAC 61.775 66.667 0.00 0.00 34.83 3.95
736 754 2.452114 CCTCCCCTCACCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
740 758 2.294078 CCCCTCACCTCACCTCACC 61.294 68.421 0.00 0.00 0.00 4.02
741 759 2.650116 CCCTCACCTCACCTCACCG 61.650 68.421 0.00 0.00 0.00 4.94
742 760 2.262915 CTCACCTCACCTCACCGC 59.737 66.667 0.00 0.00 0.00 5.68
766 784 1.681166 CCTCCTTGGCTCCAATGTCTG 60.681 57.143 1.30 0.00 35.20 3.51
894 919 0.609131 CCACCACCACCACCATCTTC 60.609 60.000 0.00 0.00 0.00 2.87
895 920 0.401738 CACCACCACCACCATCTTCT 59.598 55.000 0.00 0.00 0.00 2.85
896 921 0.693049 ACCACCACCACCATCTTCTC 59.307 55.000 0.00 0.00 0.00 2.87
1023 1051 0.036448 TCTCTATAGGCGGGTCCTCG 59.964 60.000 0.00 0.00 43.20 4.63
1039 1067 2.517402 CGTCCTCCTCCTCCTCCG 60.517 72.222 0.00 0.00 0.00 4.63
1040 1068 2.835895 GTCCTCCTCCTCCTCCGC 60.836 72.222 0.00 0.00 0.00 5.54
1041 1069 4.144727 TCCTCCTCCTCCTCCGCC 62.145 72.222 0.00 0.00 0.00 6.13
1686 1723 0.031616 AGATGGAGAGGTGAGGGTCC 60.032 60.000 0.00 0.00 0.00 4.46
1830 1876 2.434702 AGGAGGGTATTGTGATTCCGAC 59.565 50.000 0.00 0.00 0.00 4.79
1851 1897 1.001268 GATGATGATTGCTGCTGCTGG 60.001 52.381 17.00 0.00 40.48 4.85
1947 2005 5.705400 TCTTGAAATGTTCTTCCCCTTCTT 58.295 37.500 0.00 0.00 0.00 2.52
1956 2014 6.428295 TGTTCTTCCCCTTCTTAAACAAGAA 58.572 36.000 0.35 0.35 37.27 2.52
1981 2040 2.490270 ATTCCTGTGCCTGCCTGTCC 62.490 60.000 0.00 0.00 0.00 4.02
2050 2120 7.468084 CGGTGAATTAGGAGTTTTGTTTCTTGA 60.468 37.037 0.00 0.00 0.00 3.02
2133 2205 1.497278 GCGACAATTTCTGCTCGCA 59.503 52.632 7.71 0.00 45.63 5.10
2161 2233 5.419542 AGAACAGAAATCCGAATTCGATCA 58.580 37.500 28.76 12.48 43.02 2.92
2164 2236 5.046529 ACAGAAATCCGAATTCGATCAGAG 58.953 41.667 28.76 11.06 43.02 3.35
2169 2241 1.600663 CCGAATTCGATCAGAGGGACG 60.601 57.143 28.76 3.75 43.02 4.79
2171 2243 0.753262 AATTCGATCAGAGGGACGGG 59.247 55.000 0.00 0.00 0.00 5.28
2176 2248 1.381872 ATCAGAGGGACGGGGACAG 60.382 63.158 0.00 0.00 0.00 3.51
2187 2259 1.369091 CGGGGACAGGAGAATTTGCG 61.369 60.000 0.00 0.00 0.00 4.85
2235 2307 1.205820 GTCAACCACCGCGCTTAAC 59.794 57.895 5.56 0.00 0.00 2.01
2347 2425 0.755327 TTCTCTGATCCGATGGGCGA 60.755 55.000 0.00 0.00 44.57 5.54
2349 2427 1.455773 TCTGATCCGATGGGCGAGT 60.456 57.895 0.00 0.00 44.57 4.18
2350 2428 0.179001 TCTGATCCGATGGGCGAGTA 60.179 55.000 0.00 0.00 44.57 2.59
2351 2429 0.039074 CTGATCCGATGGGCGAGTAC 60.039 60.000 0.00 0.00 44.57 2.73
2519 2614 3.193691 TCGTCATCCTCTCTGTTTTCCTC 59.806 47.826 0.00 0.00 0.00 3.71
2528 2623 5.414144 CCTCTCTGTTTTCCTCCTTTTCATC 59.586 44.000 0.00 0.00 0.00 2.92
2555 2650 4.425577 AATGGAGACTGCGAAATGTTTC 57.574 40.909 0.00 0.00 0.00 2.78
2574 2669 2.256072 CTGACATGTGGCGGATGGGA 62.256 60.000 1.15 0.00 0.00 4.37
2596 2691 3.726291 ATTTGGTTGGGTGTTTCTTCG 57.274 42.857 0.00 0.00 0.00 3.79
2599 2694 0.310854 GGTTGGGTGTTTCTTCGCAG 59.689 55.000 0.00 0.00 0.00 5.18
2642 2738 3.820557 ACTTTGGCTAAGCTGAAACTCA 58.179 40.909 8.62 0.00 37.37 3.41
2643 2739 4.207165 ACTTTGGCTAAGCTGAAACTCAA 58.793 39.130 8.62 0.00 37.37 3.02
2644 2740 4.036852 ACTTTGGCTAAGCTGAAACTCAAC 59.963 41.667 8.62 0.00 37.37 3.18
2645 2741 2.143122 TGGCTAAGCTGAAACTCAACG 58.857 47.619 0.00 0.00 0.00 4.10
2646 2742 2.224185 TGGCTAAGCTGAAACTCAACGA 60.224 45.455 0.00 0.00 0.00 3.85
2647 2743 2.806244 GGCTAAGCTGAAACTCAACGAA 59.194 45.455 0.00 0.00 0.00 3.85
2648 2744 3.364068 GGCTAAGCTGAAACTCAACGAAC 60.364 47.826 0.00 0.00 0.00 3.95
2649 2745 3.495001 GCTAAGCTGAAACTCAACGAACT 59.505 43.478 0.00 0.00 0.00 3.01
2650 2746 4.376514 GCTAAGCTGAAACTCAACGAACTC 60.377 45.833 0.00 0.00 0.00 3.01
2651 2747 2.484889 AGCTGAAACTCAACGAACTCC 58.515 47.619 0.00 0.00 0.00 3.85
2652 2748 2.103263 AGCTGAAACTCAACGAACTCCT 59.897 45.455 0.00 0.00 0.00 3.69
2653 2749 2.872858 GCTGAAACTCAACGAACTCCTT 59.127 45.455 0.00 0.00 0.00 3.36
2654 2750 4.056050 GCTGAAACTCAACGAACTCCTTA 58.944 43.478 0.00 0.00 0.00 2.69
2655 2751 4.691216 GCTGAAACTCAACGAACTCCTTAT 59.309 41.667 0.00 0.00 0.00 1.73
2656 2752 5.163943 GCTGAAACTCAACGAACTCCTTATC 60.164 44.000 0.00 0.00 0.00 1.75
2657 2753 5.849510 TGAAACTCAACGAACTCCTTATCA 58.150 37.500 0.00 0.00 0.00 2.15
2658 2754 5.926542 TGAAACTCAACGAACTCCTTATCAG 59.073 40.000 0.00 0.00 0.00 2.90
2659 2755 5.470047 AACTCAACGAACTCCTTATCAGT 57.530 39.130 0.00 0.00 0.00 3.41
2660 2756 5.470047 ACTCAACGAACTCCTTATCAGTT 57.530 39.130 0.00 0.00 36.77 3.16
2661 2757 5.230942 ACTCAACGAACTCCTTATCAGTTG 58.769 41.667 0.00 0.00 38.87 3.16
2662 2758 3.994392 TCAACGAACTCCTTATCAGTTGC 59.006 43.478 0.00 0.00 37.83 4.17
2663 2759 3.963428 ACGAACTCCTTATCAGTTGCT 57.037 42.857 0.00 0.00 34.10 3.91
2664 2760 4.273148 ACGAACTCCTTATCAGTTGCTT 57.727 40.909 0.00 0.00 34.10 3.91
2665 2761 3.997021 ACGAACTCCTTATCAGTTGCTTG 59.003 43.478 0.00 0.00 34.10 4.01
2666 2762 3.181516 CGAACTCCTTATCAGTTGCTTGC 60.182 47.826 0.00 0.00 34.10 4.01
2667 2763 3.423539 ACTCCTTATCAGTTGCTTGCA 57.576 42.857 0.00 0.00 0.00 4.08
2668 2764 3.754965 ACTCCTTATCAGTTGCTTGCAA 58.245 40.909 3.70 3.70 0.00 4.08
2669 2765 4.338879 ACTCCTTATCAGTTGCTTGCAAT 58.661 39.130 11.32 0.00 0.00 3.56
2670 2766 5.500234 ACTCCTTATCAGTTGCTTGCAATA 58.500 37.500 11.32 1.49 0.00 1.90
2671 2767 5.587844 ACTCCTTATCAGTTGCTTGCAATAG 59.412 40.000 11.32 7.36 0.00 1.73
2672 2768 5.744171 TCCTTATCAGTTGCTTGCAATAGA 58.256 37.500 11.32 12.02 0.00 1.98
2673 2769 6.359804 TCCTTATCAGTTGCTTGCAATAGAT 58.640 36.000 20.51 20.51 0.00 1.98
2674 2770 7.508687 TCCTTATCAGTTGCTTGCAATAGATA 58.491 34.615 19.17 19.17 0.00 1.98
2675 2771 8.159447 TCCTTATCAGTTGCTTGCAATAGATAT 58.841 33.333 21.51 11.72 0.00 1.63
2676 2772 8.790718 CCTTATCAGTTGCTTGCAATAGATATT 58.209 33.333 21.51 9.64 0.00 1.28
2679 2775 7.628769 TCAGTTGCTTGCAATAGATATTTCA 57.371 32.000 11.32 0.00 0.00 2.69
2680 2776 7.700505 TCAGTTGCTTGCAATAGATATTTCAG 58.299 34.615 11.32 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.037493 CCATGGGCCACTTCATGATG 58.963 55.000 9.28 7.04 42.25 3.07
3 4 0.928505 ATCCATGGGCCACTTCATGA 59.071 50.000 9.28 0.00 42.25 3.07
4 5 1.133575 AGATCCATGGGCCACTTCATG 60.134 52.381 9.28 9.00 40.12 3.07
5 6 1.229131 AGATCCATGGGCCACTTCAT 58.771 50.000 9.28 0.00 0.00 2.57
6 7 1.002069 AAGATCCATGGGCCACTTCA 58.998 50.000 9.28 0.00 0.00 3.02
7 8 1.396653 CAAGATCCATGGGCCACTTC 58.603 55.000 9.28 3.31 0.00 3.01
8 9 0.685458 GCAAGATCCATGGGCCACTT 60.685 55.000 9.28 4.06 0.00 3.16
9 10 1.076485 GCAAGATCCATGGGCCACT 60.076 57.895 9.28 0.00 0.00 4.00
10 11 1.076485 AGCAAGATCCATGGGCCAC 60.076 57.895 9.28 0.00 0.00 5.01
11 12 1.076559 CAGCAAGATCCATGGGCCA 60.077 57.895 9.61 9.61 0.00 5.36
12 13 2.496291 GCAGCAAGATCCATGGGCC 61.496 63.158 13.02 0.00 0.00 5.80
13 14 1.755395 TGCAGCAAGATCCATGGGC 60.755 57.895 13.02 6.88 0.00 5.36
14 15 0.395311 AGTGCAGCAAGATCCATGGG 60.395 55.000 13.02 0.00 0.00 4.00
15 16 1.404391 GAAGTGCAGCAAGATCCATGG 59.596 52.381 4.97 4.97 0.00 3.66
16 17 2.366533 AGAAGTGCAGCAAGATCCATG 58.633 47.619 0.00 0.00 0.00 3.66
17 18 2.803030 AGAAGTGCAGCAAGATCCAT 57.197 45.000 0.00 0.00 0.00 3.41
18 19 2.574006 AAGAAGTGCAGCAAGATCCA 57.426 45.000 0.00 0.00 0.00 3.41
19 20 3.930634 AAAAGAAGTGCAGCAAGATCC 57.069 42.857 0.00 0.00 0.00 3.36
20 21 4.398247 CGTAAAAGAAGTGCAGCAAGATC 58.602 43.478 0.00 0.00 0.00 2.75
21 22 3.189287 CCGTAAAAGAAGTGCAGCAAGAT 59.811 43.478 0.00 0.00 0.00 2.40
22 23 2.548057 CCGTAAAAGAAGTGCAGCAAGA 59.452 45.455 0.00 0.00 0.00 3.02
23 24 2.290641 ACCGTAAAAGAAGTGCAGCAAG 59.709 45.455 0.00 0.00 0.00 4.01
24 25 2.294074 ACCGTAAAAGAAGTGCAGCAA 58.706 42.857 0.00 0.00 0.00 3.91
25 26 1.961793 ACCGTAAAAGAAGTGCAGCA 58.038 45.000 0.00 0.00 0.00 4.41
26 27 2.650608 CAACCGTAAAAGAAGTGCAGC 58.349 47.619 0.00 0.00 0.00 5.25
27 28 2.032799 TGCAACCGTAAAAGAAGTGCAG 59.967 45.455 0.00 0.00 0.00 4.41
28 29 2.017782 TGCAACCGTAAAAGAAGTGCA 58.982 42.857 0.00 0.00 0.00 4.57
29 30 2.766970 TGCAACCGTAAAAGAAGTGC 57.233 45.000 0.00 0.00 0.00 4.40
30 31 9.567848 AATAAATATGCAACCGTAAAAGAAGTG 57.432 29.630 0.00 0.00 0.00 3.16
84 85 5.357878 TGATGTTTCTGAGTGCTGAGTTTTT 59.642 36.000 0.00 0.00 0.00 1.94
85 86 4.883585 TGATGTTTCTGAGTGCTGAGTTTT 59.116 37.500 0.00 0.00 0.00 2.43
86 87 4.454678 TGATGTTTCTGAGTGCTGAGTTT 58.545 39.130 0.00 0.00 0.00 2.66
87 88 4.077300 TGATGTTTCTGAGTGCTGAGTT 57.923 40.909 0.00 0.00 0.00 3.01
88 89 3.758755 TGATGTTTCTGAGTGCTGAGT 57.241 42.857 0.00 0.00 0.00 3.41
89 90 4.454847 ACAATGATGTTTCTGAGTGCTGAG 59.545 41.667 0.00 0.00 35.91 3.35
90 91 4.392047 ACAATGATGTTTCTGAGTGCTGA 58.608 39.130 0.00 0.00 35.91 4.26
91 92 4.761235 ACAATGATGTTTCTGAGTGCTG 57.239 40.909 0.00 0.00 35.91 4.41
103 104 7.750229 AGGCGATTCATAATAACAATGATGT 57.250 32.000 0.00 0.00 43.14 3.06
104 105 8.939929 AGTAGGCGATTCATAATAACAATGATG 58.060 33.333 0.00 0.00 33.52 3.07
105 106 8.939929 CAGTAGGCGATTCATAATAACAATGAT 58.060 33.333 0.00 0.00 33.52 2.45
106 107 8.147704 TCAGTAGGCGATTCATAATAACAATGA 58.852 33.333 0.00 0.00 0.00 2.57
107 108 8.310406 TCAGTAGGCGATTCATAATAACAATG 57.690 34.615 0.00 0.00 0.00 2.82
108 109 9.507329 AATCAGTAGGCGATTCATAATAACAAT 57.493 29.630 0.00 0.00 0.00 2.71
109 110 8.902540 AATCAGTAGGCGATTCATAATAACAA 57.097 30.769 0.00 0.00 0.00 2.83
110 111 7.602644 GGAATCAGTAGGCGATTCATAATAACA 59.397 37.037 13.25 0.00 46.98 2.41
111 112 7.201444 CGGAATCAGTAGGCGATTCATAATAAC 60.201 40.741 13.25 0.00 46.98 1.89
112 113 6.811665 CGGAATCAGTAGGCGATTCATAATAA 59.188 38.462 13.25 0.00 46.98 1.40
113 114 6.152154 TCGGAATCAGTAGGCGATTCATAATA 59.848 38.462 13.25 0.00 46.98 0.98
114 115 5.047306 TCGGAATCAGTAGGCGATTCATAAT 60.047 40.000 13.25 0.00 46.98 1.28
115 116 4.279922 TCGGAATCAGTAGGCGATTCATAA 59.720 41.667 13.25 0.00 46.98 1.90
116 117 3.824443 TCGGAATCAGTAGGCGATTCATA 59.176 43.478 13.25 0.43 46.98 2.15
117 118 2.628178 TCGGAATCAGTAGGCGATTCAT 59.372 45.455 13.25 0.00 46.98 2.57
118 119 2.028876 TCGGAATCAGTAGGCGATTCA 58.971 47.619 13.25 0.00 46.98 2.57
119 120 2.034812 AGTCGGAATCAGTAGGCGATTC 59.965 50.000 4.65 4.65 45.28 2.52
120 121 2.032620 AGTCGGAATCAGTAGGCGATT 58.967 47.619 0.00 0.00 35.80 3.34
121 122 1.693627 AGTCGGAATCAGTAGGCGAT 58.306 50.000 0.00 0.00 0.00 4.58
122 123 1.471119 AAGTCGGAATCAGTAGGCGA 58.529 50.000 0.00 0.00 0.00 5.54
123 124 2.295253 AAAGTCGGAATCAGTAGGCG 57.705 50.000 0.00 0.00 0.00 5.52
124 125 3.982058 CGATAAAGTCGGAATCAGTAGGC 59.018 47.826 0.00 0.00 46.47 3.93
137 138 4.491676 TGCTAGGTGTCAACGATAAAGTC 58.508 43.478 0.00 0.00 0.00 3.01
138 139 4.530710 TGCTAGGTGTCAACGATAAAGT 57.469 40.909 0.00 0.00 0.00 2.66
139 140 5.109210 TCATGCTAGGTGTCAACGATAAAG 58.891 41.667 0.00 0.00 0.00 1.85
140 141 5.079689 TCATGCTAGGTGTCAACGATAAA 57.920 39.130 0.00 0.00 0.00 1.40
141 142 4.729227 TCATGCTAGGTGTCAACGATAA 57.271 40.909 0.00 0.00 0.00 1.75
142 143 4.081917 TGTTCATGCTAGGTGTCAACGATA 60.082 41.667 0.00 0.00 0.00 2.92
143 144 3.262420 GTTCATGCTAGGTGTCAACGAT 58.738 45.455 0.00 0.00 0.00 3.73
144 145 2.036604 TGTTCATGCTAGGTGTCAACGA 59.963 45.455 0.00 0.00 0.00 3.85
145 146 2.412870 TGTTCATGCTAGGTGTCAACG 58.587 47.619 0.00 0.00 0.00 4.10
146 147 4.002982 TCATGTTCATGCTAGGTGTCAAC 58.997 43.478 7.80 0.00 0.00 3.18
147 148 4.002982 GTCATGTTCATGCTAGGTGTCAA 58.997 43.478 7.80 0.00 0.00 3.18
148 149 3.599343 GTCATGTTCATGCTAGGTGTCA 58.401 45.455 7.80 0.00 0.00 3.58
149 150 2.604914 CGTCATGTTCATGCTAGGTGTC 59.395 50.000 7.80 0.00 0.00 3.67
150 151 2.621338 CGTCATGTTCATGCTAGGTGT 58.379 47.619 7.80 0.00 0.00 4.16
151 152 1.328680 GCGTCATGTTCATGCTAGGTG 59.671 52.381 7.80 0.00 0.00 4.00
152 153 1.656652 GCGTCATGTTCATGCTAGGT 58.343 50.000 7.80 0.00 0.00 3.08
153 154 0.578683 CGCGTCATGTTCATGCTAGG 59.421 55.000 0.00 0.27 0.00 3.02
154 155 1.005662 CACGCGTCATGTTCATGCTAG 60.006 52.381 9.86 0.00 0.00 3.42
155 156 0.998669 CACGCGTCATGTTCATGCTA 59.001 50.000 9.86 0.00 0.00 3.49
156 157 0.670239 TCACGCGTCATGTTCATGCT 60.670 50.000 9.86 0.00 0.00 3.79
157 158 0.374758 ATCACGCGTCATGTTCATGC 59.625 50.000 9.86 3.35 0.00 4.06
158 159 2.811902 AATCACGCGTCATGTTCATG 57.188 45.000 9.86 6.46 0.00 3.07
159 160 3.829886 AAAATCACGCGTCATGTTCAT 57.170 38.095 9.86 0.00 0.00 2.57
160 161 4.024809 TGTTAAAATCACGCGTCATGTTCA 60.025 37.500 9.86 0.00 0.00 3.18
161 162 4.459606 TGTTAAAATCACGCGTCATGTTC 58.540 39.130 9.86 0.00 0.00 3.18
162 163 4.475763 TGTTAAAATCACGCGTCATGTT 57.524 36.364 9.86 6.18 0.00 2.71
163 164 4.463209 CTTGTTAAAATCACGCGTCATGT 58.537 39.130 9.86 0.00 0.00 3.21
164 165 3.845775 CCTTGTTAAAATCACGCGTCATG 59.154 43.478 9.86 0.00 0.00 3.07
165 166 3.500680 ACCTTGTTAAAATCACGCGTCAT 59.499 39.130 9.86 0.00 0.00 3.06
166 167 2.873472 ACCTTGTTAAAATCACGCGTCA 59.127 40.909 9.86 0.00 0.00 4.35
167 168 3.059461 TCACCTTGTTAAAATCACGCGTC 60.059 43.478 9.86 0.00 0.00 5.19
168 169 2.873472 TCACCTTGTTAAAATCACGCGT 59.127 40.909 5.58 5.58 0.00 6.01
169 170 3.529634 TCACCTTGTTAAAATCACGCG 57.470 42.857 3.53 3.53 0.00 6.01
170 171 4.088648 CGATCACCTTGTTAAAATCACGC 58.911 43.478 0.00 0.00 0.00 5.34
171 172 5.524511 TCGATCACCTTGTTAAAATCACG 57.475 39.130 0.00 0.00 0.00 4.35
172 173 7.129109 TCTTCGATCACCTTGTTAAAATCAC 57.871 36.000 0.00 0.00 0.00 3.06
173 174 7.606073 TGATCTTCGATCACCTTGTTAAAATCA 59.394 33.333 2.59 0.00 0.00 2.57
174 175 7.974675 TGATCTTCGATCACCTTGTTAAAATC 58.025 34.615 2.59 0.00 0.00 2.17
175 176 7.921786 TGATCTTCGATCACCTTGTTAAAAT 57.078 32.000 2.59 0.00 0.00 1.82
176 177 7.737972 TTGATCTTCGATCACCTTGTTAAAA 57.262 32.000 6.07 0.00 0.00 1.52
177 178 7.921786 ATTGATCTTCGATCACCTTGTTAAA 57.078 32.000 6.07 0.00 0.00 1.52
178 179 8.258007 AGTATTGATCTTCGATCACCTTGTTAA 58.742 33.333 6.07 0.00 0.00 2.01
179 180 7.782049 AGTATTGATCTTCGATCACCTTGTTA 58.218 34.615 6.07 0.00 0.00 2.41
180 181 6.644347 AGTATTGATCTTCGATCACCTTGTT 58.356 36.000 6.07 0.00 0.00 2.83
181 182 6.227298 AGTATTGATCTTCGATCACCTTGT 57.773 37.500 6.07 0.00 0.00 3.16
182 183 5.694006 GGAGTATTGATCTTCGATCACCTTG 59.306 44.000 6.07 0.00 0.00 3.61
183 184 5.221541 GGGAGTATTGATCTTCGATCACCTT 60.222 44.000 6.07 0.00 0.00 3.50
184 185 4.282195 GGGAGTATTGATCTTCGATCACCT 59.718 45.833 6.07 3.55 0.00 4.00
185 186 4.039245 TGGGAGTATTGATCTTCGATCACC 59.961 45.833 6.07 4.45 0.00 4.02
186 187 4.985409 GTGGGAGTATTGATCTTCGATCAC 59.015 45.833 6.07 0.00 0.00 3.06
187 188 4.039245 GGTGGGAGTATTGATCTTCGATCA 59.961 45.833 2.59 2.59 0.00 2.92
188 189 4.039245 TGGTGGGAGTATTGATCTTCGATC 59.961 45.833 0.00 0.00 0.00 3.69
189 190 3.967326 TGGTGGGAGTATTGATCTTCGAT 59.033 43.478 0.00 0.00 0.00 3.59
190 191 3.371034 TGGTGGGAGTATTGATCTTCGA 58.629 45.455 0.00 0.00 0.00 3.71
191 192 3.819564 TGGTGGGAGTATTGATCTTCG 57.180 47.619 0.00 0.00 0.00 3.79
192 193 5.440610 ACAATGGTGGGAGTATTGATCTTC 58.559 41.667 0.00 0.00 36.09 2.87
193 194 5.456921 ACAATGGTGGGAGTATTGATCTT 57.543 39.130 0.00 0.00 36.09 2.40
194 195 5.195940 CAACAATGGTGGGAGTATTGATCT 58.804 41.667 0.00 0.00 36.09 2.75
195 196 4.949856 ACAACAATGGTGGGAGTATTGATC 59.050 41.667 2.39 0.00 36.09 2.92
196 197 4.934356 ACAACAATGGTGGGAGTATTGAT 58.066 39.130 2.39 0.00 36.09 2.57
197 198 4.380843 ACAACAATGGTGGGAGTATTGA 57.619 40.909 2.39 0.00 36.09 2.57
198 199 5.391523 CGTAACAACAATGGTGGGAGTATTG 60.392 44.000 2.39 0.00 37.71 1.90
199 200 4.698304 CGTAACAACAATGGTGGGAGTATT 59.302 41.667 2.39 0.00 0.00 1.89
200 201 4.258543 CGTAACAACAATGGTGGGAGTAT 58.741 43.478 2.39 0.00 0.00 2.12
201 202 3.071312 ACGTAACAACAATGGTGGGAGTA 59.929 43.478 2.39 0.00 0.00 2.59
202 203 2.158726 ACGTAACAACAATGGTGGGAGT 60.159 45.455 2.39 0.00 0.00 3.85
203 204 2.482721 GACGTAACAACAATGGTGGGAG 59.517 50.000 2.39 0.00 0.00 4.30
204 205 2.496111 GACGTAACAACAATGGTGGGA 58.504 47.619 2.39 0.00 0.00 4.37
205 206 1.195900 CGACGTAACAACAATGGTGGG 59.804 52.381 2.39 0.00 0.00 4.61
206 207 1.195900 CCGACGTAACAACAATGGTGG 59.804 52.381 2.39 0.00 0.00 4.61
207 208 1.399215 GCCGACGTAACAACAATGGTG 60.399 52.381 0.00 0.00 0.00 4.17
208 209 0.869730 GCCGACGTAACAACAATGGT 59.130 50.000 0.00 0.00 0.00 3.55
209 210 0.869068 TGCCGACGTAACAACAATGG 59.131 50.000 0.00 0.00 0.00 3.16
210 211 2.892373 ATGCCGACGTAACAACAATG 57.108 45.000 0.00 0.00 0.00 2.82
211 212 5.813672 ACTAATATGCCGACGTAACAACAAT 59.186 36.000 0.00 0.00 0.00 2.71
212 213 5.170021 ACTAATATGCCGACGTAACAACAA 58.830 37.500 0.00 0.00 0.00 2.83
213 214 4.746729 ACTAATATGCCGACGTAACAACA 58.253 39.130 0.00 0.00 0.00 3.33
214 215 5.707411 AACTAATATGCCGACGTAACAAC 57.293 39.130 0.00 0.00 0.00 3.32
215 216 6.147492 ACAAAACTAATATGCCGACGTAACAA 59.853 34.615 0.00 0.00 0.00 2.83
216 217 5.638657 ACAAAACTAATATGCCGACGTAACA 59.361 36.000 0.00 0.00 0.00 2.41
217 218 6.098367 ACAAAACTAATATGCCGACGTAAC 57.902 37.500 0.00 0.00 0.00 2.50
218 219 6.724694 AACAAAACTAATATGCCGACGTAA 57.275 33.333 0.00 0.00 0.00 3.18
219 220 6.724694 AAACAAAACTAATATGCCGACGTA 57.275 33.333 0.00 0.00 0.00 3.57
220 221 5.616488 AAACAAAACTAATATGCCGACGT 57.384 34.783 0.00 0.00 0.00 4.34
221 222 6.996106 TCTAAACAAAACTAATATGCCGACG 58.004 36.000 0.00 0.00 0.00 5.12
222 223 7.971455 ACTCTAAACAAAACTAATATGCCGAC 58.029 34.615 0.00 0.00 0.00 4.79
223 224 8.556213 AACTCTAAACAAAACTAATATGCCGA 57.444 30.769 0.00 0.00 0.00 5.54
243 244 9.041354 TGGGCATGGTTTATAAATTTTAACTCT 57.959 29.630 0.31 0.00 0.00 3.24
244 245 9.660180 TTGGGCATGGTTTATAAATTTTAACTC 57.340 29.630 0.31 0.00 0.00 3.01
245 246 9.665719 CTTGGGCATGGTTTATAAATTTTAACT 57.334 29.630 0.31 0.00 0.00 2.24
246 247 9.443323 ACTTGGGCATGGTTTATAAATTTTAAC 57.557 29.630 0.31 0.00 0.00 2.01
249 250 8.791675 CAAACTTGGGCATGGTTTATAAATTTT 58.208 29.630 0.31 0.00 32.80 1.82
250 251 7.094420 GCAAACTTGGGCATGGTTTATAAATTT 60.094 33.333 0.31 0.00 32.80 1.82
251 252 6.374053 GCAAACTTGGGCATGGTTTATAAATT 59.626 34.615 0.31 0.00 32.80 1.82
252 253 5.879777 GCAAACTTGGGCATGGTTTATAAAT 59.120 36.000 0.31 0.00 32.80 1.40
253 254 5.241662 GCAAACTTGGGCATGGTTTATAAA 58.758 37.500 0.00 0.00 32.80 1.40
254 255 4.619394 CGCAAACTTGGGCATGGTTTATAA 60.619 41.667 0.00 0.00 34.31 0.98
255 256 3.119316 CGCAAACTTGGGCATGGTTTATA 60.119 43.478 0.00 0.00 34.31 0.98
256 257 2.353605 CGCAAACTTGGGCATGGTTTAT 60.354 45.455 0.00 0.00 34.31 1.40
257 258 1.000283 CGCAAACTTGGGCATGGTTTA 60.000 47.619 0.00 0.00 34.31 2.01
258 259 0.249826 CGCAAACTTGGGCATGGTTT 60.250 50.000 0.00 0.00 34.31 3.27
259 260 1.367102 CGCAAACTTGGGCATGGTT 59.633 52.632 0.00 0.00 34.31 3.67
260 261 1.832167 ACGCAAACTTGGGCATGGT 60.832 52.632 6.43 0.00 44.05 3.55
261 262 1.373246 CACGCAAACTTGGGCATGG 60.373 57.895 6.43 0.00 44.05 3.66
262 263 0.664166 GTCACGCAAACTTGGGCATG 60.664 55.000 6.43 0.00 44.05 4.06
263 264 1.106351 TGTCACGCAAACTTGGGCAT 61.106 50.000 6.43 0.00 44.05 4.40
264 265 1.315981 TTGTCACGCAAACTTGGGCA 61.316 50.000 6.43 0.00 44.05 5.36
265 266 0.179124 TTTGTCACGCAAACTTGGGC 60.179 50.000 6.43 0.00 44.05 5.36
266 267 2.285827 TTTTGTCACGCAAACTTGGG 57.714 45.000 5.07 5.07 45.70 4.12
267 268 7.168302 TGTTATTATTTTGTCACGCAAACTTGG 59.832 33.333 0.00 0.00 45.70 3.61
268 269 8.055609 TGTTATTATTTTGTCACGCAAACTTG 57.944 30.769 0.00 0.00 45.70 3.16
269 270 8.810652 ATGTTATTATTTTGTCACGCAAACTT 57.189 26.923 0.00 0.00 45.70 2.66
274 275 9.923786 GTGTATATGTTATTATTTTGTCACGCA 57.076 29.630 0.00 0.00 0.00 5.24
275 276 9.377383 GGTGTATATGTTATTATTTTGTCACGC 57.623 33.333 0.00 0.00 0.00 5.34
367 368 9.295825 TGACCAAGTTAGAAACAATATGAACAT 57.704 29.630 0.00 0.00 0.00 2.71
368 369 8.684386 TGACCAAGTTAGAAACAATATGAACA 57.316 30.769 0.00 0.00 0.00 3.18
369 370 9.959749 TTTGACCAAGTTAGAAACAATATGAAC 57.040 29.630 0.00 0.00 0.00 3.18
370 371 9.959749 GTTTGACCAAGTTAGAAACAATATGAA 57.040 29.630 0.00 0.00 0.00 2.57
371 372 9.349713 AGTTTGACCAAGTTAGAAACAATATGA 57.650 29.630 0.00 0.00 0.00 2.15
372 373 9.965824 AAGTTTGACCAAGTTAGAAACAATATG 57.034 29.630 0.00 0.00 0.00 1.78
391 392 9.349713 ACTGAGGTCAAATTGTATAAAGTTTGA 57.650 29.630 9.00 9.00 38.01 2.69
392 393 9.612620 GACTGAGGTCAAATTGTATAAAGTTTG 57.387 33.333 4.83 4.83 41.75 2.93
409 410 5.278022 CCTTTGTTTAGCTTTGACTGAGGTC 60.278 44.000 0.00 0.00 42.42 3.85
410 411 4.580580 CCTTTGTTTAGCTTTGACTGAGGT 59.419 41.667 0.00 0.00 0.00 3.85
411 412 4.022849 CCCTTTGTTTAGCTTTGACTGAGG 60.023 45.833 0.00 0.95 0.00 3.86
412 413 4.821805 TCCCTTTGTTTAGCTTTGACTGAG 59.178 41.667 0.00 0.00 0.00 3.35
413 414 4.787551 TCCCTTTGTTTAGCTTTGACTGA 58.212 39.130 0.00 0.00 0.00 3.41
414 415 4.580580 ACTCCCTTTGTTTAGCTTTGACTG 59.419 41.667 0.00 0.00 0.00 3.51
415 416 4.793201 ACTCCCTTTGTTTAGCTTTGACT 58.207 39.130 0.00 0.00 0.00 3.41
416 417 5.048921 GGTACTCCCTTTGTTTAGCTTTGAC 60.049 44.000 0.00 0.00 0.00 3.18
417 418 5.067954 GGTACTCCCTTTGTTTAGCTTTGA 58.932 41.667 0.00 0.00 0.00 2.69
418 419 4.825085 TGGTACTCCCTTTGTTTAGCTTTG 59.175 41.667 0.00 0.00 0.00 2.77
419 420 4.825634 GTGGTACTCCCTTTGTTTAGCTTT 59.174 41.667 0.00 0.00 0.00 3.51
420 421 4.395625 GTGGTACTCCCTTTGTTTAGCTT 58.604 43.478 0.00 0.00 0.00 3.74
421 422 3.556423 CGTGGTACTCCCTTTGTTTAGCT 60.556 47.826 0.00 0.00 0.00 3.32
422 423 2.740447 CGTGGTACTCCCTTTGTTTAGC 59.260 50.000 0.00 0.00 0.00 3.09
423 424 3.992427 GTCGTGGTACTCCCTTTGTTTAG 59.008 47.826 0.00 0.00 0.00 1.85
424 425 3.387374 TGTCGTGGTACTCCCTTTGTTTA 59.613 43.478 0.00 0.00 0.00 2.01
425 426 2.171027 TGTCGTGGTACTCCCTTTGTTT 59.829 45.455 0.00 0.00 0.00 2.83
426 427 1.764134 TGTCGTGGTACTCCCTTTGTT 59.236 47.619 0.00 0.00 0.00 2.83
427 428 1.069668 GTGTCGTGGTACTCCCTTTGT 59.930 52.381 0.00 0.00 0.00 2.83
428 429 1.607251 GGTGTCGTGGTACTCCCTTTG 60.607 57.143 0.00 0.00 0.00 2.77
429 430 0.683412 GGTGTCGTGGTACTCCCTTT 59.317 55.000 0.00 0.00 0.00 3.11
430 431 1.530013 CGGTGTCGTGGTACTCCCTT 61.530 60.000 0.00 0.00 30.77 3.95
431 432 1.975407 CGGTGTCGTGGTACTCCCT 60.975 63.158 0.00 0.00 30.77 4.20
432 433 2.570181 CGGTGTCGTGGTACTCCC 59.430 66.667 0.00 0.00 30.77 4.30
442 443 1.206578 GGATGTTGCAACGGTGTCG 59.793 57.895 23.79 0.00 43.02 4.35
443 444 1.206578 CGGATGTTGCAACGGTGTC 59.793 57.895 23.79 17.45 0.00 3.67
444 445 1.525077 ACGGATGTTGCAACGGTGT 60.525 52.632 23.79 16.13 0.00 4.16
445 446 1.082169 CACGGATGTTGCAACGGTG 60.082 57.895 23.79 21.92 33.22 4.94
446 447 0.816018 TTCACGGATGTTGCAACGGT 60.816 50.000 23.79 15.35 0.00 4.83
447 448 0.309302 TTTCACGGATGTTGCAACGG 59.691 50.000 23.79 15.02 0.00 4.44
448 449 2.112475 TTTTCACGGATGTTGCAACG 57.888 45.000 23.79 14.69 0.00 4.10
449 450 5.041951 TCTATTTTCACGGATGTTGCAAC 57.958 39.130 22.83 22.83 0.00 4.17
450 451 5.335583 CCTTCTATTTTCACGGATGTTGCAA 60.336 40.000 0.00 0.00 0.00 4.08
451 452 4.155826 CCTTCTATTTTCACGGATGTTGCA 59.844 41.667 0.00 0.00 0.00 4.08
452 453 4.662145 CCTTCTATTTTCACGGATGTTGC 58.338 43.478 0.00 0.00 0.00 4.17
453 454 4.662145 GCCTTCTATTTTCACGGATGTTG 58.338 43.478 0.00 0.00 0.00 3.33
454 455 3.374058 CGCCTTCTATTTTCACGGATGTT 59.626 43.478 0.00 0.00 0.00 2.71
455 456 2.936498 CGCCTTCTATTTTCACGGATGT 59.064 45.455 0.00 0.00 0.00 3.06
456 457 2.936498 ACGCCTTCTATTTTCACGGATG 59.064 45.455 0.00 0.00 0.00 3.51
457 458 3.261981 ACGCCTTCTATTTTCACGGAT 57.738 42.857 0.00 0.00 0.00 4.18
458 459 2.754946 ACGCCTTCTATTTTCACGGA 57.245 45.000 0.00 0.00 0.00 4.69
459 460 4.369182 AGATACGCCTTCTATTTTCACGG 58.631 43.478 0.00 0.00 0.00 4.94
460 461 5.050972 GGAAGATACGCCTTCTATTTTCACG 60.051 44.000 11.06 0.00 41.60 4.35
461 462 5.815740 TGGAAGATACGCCTTCTATTTTCAC 59.184 40.000 11.06 0.00 41.60 3.18
462 463 5.815740 GTGGAAGATACGCCTTCTATTTTCA 59.184 40.000 11.06 0.38 41.60 2.69
463 464 5.815740 TGTGGAAGATACGCCTTCTATTTTC 59.184 40.000 11.06 0.56 41.60 2.29
464 465 5.741011 TGTGGAAGATACGCCTTCTATTTT 58.259 37.500 11.06 0.00 41.60 1.82
465 466 5.353394 TGTGGAAGATACGCCTTCTATTT 57.647 39.130 11.06 0.00 41.60 1.40
466 467 5.552870 ATGTGGAAGATACGCCTTCTATT 57.447 39.130 11.06 0.00 41.60 1.73
467 468 5.552870 AATGTGGAAGATACGCCTTCTAT 57.447 39.130 11.06 3.80 41.60 1.98
468 469 5.353394 AAATGTGGAAGATACGCCTTCTA 57.647 39.130 11.06 4.40 41.60 2.10
469 470 3.914426 AATGTGGAAGATACGCCTTCT 57.086 42.857 11.06 0.00 41.60 2.85
470 471 3.001330 CGAAATGTGGAAGATACGCCTTC 59.999 47.826 0.00 0.00 41.26 3.46
471 472 2.936498 CGAAATGTGGAAGATACGCCTT 59.064 45.455 0.00 0.00 0.00 4.35
472 473 2.550978 CGAAATGTGGAAGATACGCCT 58.449 47.619 0.00 0.00 0.00 5.52
473 474 1.003866 GCGAAATGTGGAAGATACGCC 60.004 52.381 0.00 0.00 38.68 5.68
474 475 1.003866 GGCGAAATGTGGAAGATACGC 60.004 52.381 0.00 0.00 41.74 4.42
574 575 1.092348 GCCCGCTTTCTTATTTCCGT 58.908 50.000 0.00 0.00 0.00 4.69
575 576 1.091537 TGCCCGCTTTCTTATTTCCG 58.908 50.000 0.00 0.00 0.00 4.30
591 592 0.739813 AGCGGTCGTTATTGAGTGCC 60.740 55.000 0.00 0.00 0.00 5.01
690 708 3.043713 TTGGCTGCTCGTTCGCTG 61.044 61.111 0.00 0.00 0.00 5.18
691 709 3.044305 GTTGGCTGCTCGTTCGCT 61.044 61.111 0.00 0.00 0.00 4.93
692 710 3.345808 TGTTGGCTGCTCGTTCGC 61.346 61.111 0.00 0.00 0.00 4.70
693 711 2.551270 GTGTTGGCTGCTCGTTCG 59.449 61.111 0.00 0.00 0.00 3.95
694 712 2.617274 GGGTGTTGGCTGCTCGTTC 61.617 63.158 0.00 0.00 0.00 3.95
695 713 2.594592 GGGTGTTGGCTGCTCGTT 60.595 61.111 0.00 0.00 0.00 3.85
696 714 4.988598 CGGGTGTTGGCTGCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
736 754 2.583441 CCAAGGAGGAGTGCGGTGA 61.583 63.158 0.00 0.00 41.22 4.02
740 758 2.125350 GAGCCAAGGAGGAGTGCG 60.125 66.667 0.00 0.00 41.22 5.34
741 759 2.129555 TTGGAGCCAAGGAGGAGTGC 62.130 60.000 0.00 0.00 41.22 4.40
742 760 0.622665 ATTGGAGCCAAGGAGGAGTG 59.377 55.000 8.09 0.00 41.22 3.51
766 784 2.288518 GGAGGTGATTAGCGAGTGGATC 60.289 54.545 0.00 0.00 0.00 3.36
894 919 0.842467 AGGTGGGTGGGAGAAAGGAG 60.842 60.000 0.00 0.00 0.00 3.69
895 920 0.402861 AAGGTGGGTGGGAGAAAGGA 60.403 55.000 0.00 0.00 0.00 3.36
896 921 0.482887 AAAGGTGGGTGGGAGAAAGG 59.517 55.000 0.00 0.00 0.00 3.11
1023 1051 2.835895 GCGGAGGAGGAGGAGGAC 60.836 72.222 0.00 0.00 0.00 3.85
1741 1783 8.576442 CATCCAGTAATTAATCGCCCTTATTTT 58.424 33.333 0.00 0.00 0.00 1.82
1830 1876 0.945099 AGCAGCAGCAATCATCATCG 59.055 50.000 3.17 0.00 45.49 3.84
1858 1907 6.032094 AGCATCAAGAATTTACAAATCAGCG 58.968 36.000 0.00 0.00 0.00 5.18
1947 2005 3.660669 ACAGGAATCCCCCTTCTTGTTTA 59.339 43.478 0.00 0.00 41.14 2.01
1956 2014 2.128226 AGGCACAGGAATCCCCCT 59.872 61.111 0.00 0.00 36.90 4.79
2050 2120 3.067461 TCAAACGGTTAGCATTGCACTTT 59.933 39.130 11.91 0.00 0.00 2.66
2133 2205 5.122396 CGAATTCGGATTTCTGTTCTTCCTT 59.878 40.000 20.16 0.00 35.37 3.36
2161 2233 3.273654 TCCTGTCCCCGTCCCTCT 61.274 66.667 0.00 0.00 0.00 3.69
2164 2236 1.272554 AATTCTCCTGTCCCCGTCCC 61.273 60.000 0.00 0.00 0.00 4.46
2169 2241 0.035439 TCGCAAATTCTCCTGTCCCC 60.035 55.000 0.00 0.00 0.00 4.81
2171 2243 1.734465 CACTCGCAAATTCTCCTGTCC 59.266 52.381 0.00 0.00 0.00 4.02
2176 2248 0.729690 GAGCCACTCGCAAATTCTCC 59.270 55.000 0.00 0.00 41.38 3.71
2187 2259 1.077089 GTTTACGAGCCGAGCCACTC 61.077 60.000 1.50 0.00 0.00 3.51
2235 2307 6.647212 TGTCTGATCTTTGTTAGCGTTATG 57.353 37.500 0.00 0.00 0.00 1.90
2320 2398 2.174319 GGATCAGAGAAACCGGCGC 61.174 63.158 0.00 0.00 0.00 6.53
2347 2425 7.557719 ACATTTCTGGCAGCAAATAATAGTACT 59.442 33.333 10.34 0.00 0.00 2.73
2349 2427 7.339212 ACACATTTCTGGCAGCAAATAATAGTA 59.661 33.333 10.34 0.00 0.00 1.82
2350 2428 6.153340 ACACATTTCTGGCAGCAAATAATAGT 59.847 34.615 10.34 8.06 0.00 2.12
2351 2429 6.567050 ACACATTTCTGGCAGCAAATAATAG 58.433 36.000 10.34 7.52 0.00 1.73
2402 2496 3.730761 CGCAGAAGGCCAGTGCAC 61.731 66.667 20.18 9.40 40.31 4.57
2519 2614 7.542025 CAGTCTCCATTAAAAGGATGAAAAGG 58.458 38.462 0.95 0.00 33.99 3.11
2528 2623 5.106157 ACATTTCGCAGTCTCCATTAAAAGG 60.106 40.000 0.00 0.00 0.00 3.11
2555 2650 1.820906 CCCATCCGCCACATGTCAG 60.821 63.158 0.00 0.00 0.00 3.51
2566 2661 1.206849 CCCAACCAAATTTCCCATCCG 59.793 52.381 0.00 0.00 0.00 4.18
2574 2669 4.438148 CGAAGAAACACCCAACCAAATTT 58.562 39.130 0.00 0.00 0.00 1.82
2596 2691 9.122613 GTTTCTGAATTTTCTGAATACTTCTGC 57.877 33.333 11.76 0.00 42.24 4.26
2616 2712 4.836125 TTCAGCTTAGCCAAAGTTTCTG 57.164 40.909 0.00 0.00 37.53 3.02
2642 2738 4.273148 AGCAACTGATAAGGAGTTCGTT 57.727 40.909 0.00 0.00 31.05 3.85
2643 2739 3.963428 AGCAACTGATAAGGAGTTCGT 57.037 42.857 0.00 0.00 31.05 3.85
2644 2740 3.181516 GCAAGCAACTGATAAGGAGTTCG 60.182 47.826 0.00 0.00 31.05 3.95
2645 2741 3.753272 TGCAAGCAACTGATAAGGAGTTC 59.247 43.478 0.00 0.00 31.05 3.01
2646 2742 3.754965 TGCAAGCAACTGATAAGGAGTT 58.245 40.909 0.00 0.00 33.82 3.01
2647 2743 3.423539 TGCAAGCAACTGATAAGGAGT 57.576 42.857 0.00 0.00 0.00 3.85
2648 2744 4.978083 ATTGCAAGCAACTGATAAGGAG 57.022 40.909 9.97 0.00 38.88 3.69
2649 2745 5.744171 TCTATTGCAAGCAACTGATAAGGA 58.256 37.500 9.97 0.00 38.88 3.36
2650 2746 6.630444 ATCTATTGCAAGCAACTGATAAGG 57.370 37.500 9.97 0.00 38.88 2.69
2653 2749 9.341078 TGAAATATCTATTGCAAGCAACTGATA 57.659 29.630 22.12 22.12 38.88 2.15
2654 2750 8.229253 TGAAATATCTATTGCAAGCAACTGAT 57.771 30.769 20.23 20.23 38.88 2.90
2655 2751 7.628769 TGAAATATCTATTGCAAGCAACTGA 57.371 32.000 9.97 11.14 38.88 3.41
2656 2752 7.909777 CTGAAATATCTATTGCAAGCAACTG 57.090 36.000 9.97 6.12 38.88 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.