Multiple sequence alignment - TraesCS3D01G172500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G172500 chr3D 100.000 5532 0 0 1 5532 153073044 153078575 0.000000e+00 10216.0
1 TraesCS3D01G172500 chr3D 87.990 383 29 7 4939 5309 152820671 152821048 2.370000e-118 436.0
2 TraesCS3D01G172500 chr3D 84.146 164 17 7 5305 5463 410990823 410990664 3.450000e-32 150.0
3 TraesCS3D01G172500 chr3D 92.647 68 4 1 5466 5532 152825023 152825090 4.560000e-16 97.1
4 TraesCS3D01G172500 chr4D 95.688 3177 133 3 1226 4400 323559059 323555885 0.000000e+00 5105.0
5 TraesCS3D01G172500 chr4D 89.852 877 78 4 1 876 91237122 91236256 0.000000e+00 1116.0
6 TraesCS3D01G172500 chr4D 86.559 372 34 13 4553 4917 91236273 91235911 4.020000e-106 396.0
7 TraesCS3D01G172500 chr4D 84.150 347 52 2 882 1226 349921147 349921492 3.190000e-87 333.0
8 TraesCS3D01G172500 chr4D 86.228 167 16 5 5303 5466 127159154 127158992 2.050000e-39 174.0
9 TraesCS3D01G172500 chr7A 93.858 3191 174 5 1226 4400 158660425 158663609 0.000000e+00 4787.0
10 TraesCS3D01G172500 chr7A 87.059 340 41 3 889 1226 219377945 219378283 1.120000e-101 381.0
11 TraesCS3D01G172500 chr7A 83.285 347 55 3 882 1226 50183400 50183055 3.220000e-82 316.0
12 TraesCS3D01G172500 chr3A 93.453 3177 199 5 1226 4400 391921850 391918681 0.000000e+00 4706.0
13 TraesCS3D01G172500 chr3A 89.555 651 40 11 4901 5532 177111695 177111054 0.000000e+00 800.0
14 TraesCS3D01G172500 chr3A 87.348 577 49 16 4409 4980 177112261 177111704 1.680000e-179 640.0
15 TraesCS3D01G172500 chr3A 90.000 380 28 2 4939 5309 177706560 177706182 3.000000e-132 483.0
16 TraesCS3D01G172500 chr3A 85.802 324 17 5 4594 4888 568030857 568030534 3.220000e-82 316.0
17 TraesCS3D01G172500 chr3A 87.500 152 15 4 4409 4558 739403405 739403256 7.370000e-39 172.0
18 TraesCS3D01G172500 chr3A 94.118 68 3 1 5466 5532 177685860 177685793 9.800000e-18 102.0
19 TraesCS3D01G172500 chr1B 93.262 3176 206 4 1226 4400 442069424 442072592 0.000000e+00 4673.0
20 TraesCS3D01G172500 chr1B 89.738 877 80 5 1 876 642764293 642763426 0.000000e+00 1112.0
21 TraesCS3D01G172500 chr1B 84.527 349 47 6 882 1226 227711083 227710738 6.860000e-89 339.0
22 TraesCS3D01G172500 chr1B 83.529 340 50 4 889 1226 201759732 201760067 4.160000e-81 313.0
23 TraesCS3D01G172500 chr5B 92.979 3176 214 5 1226 4400 392137406 392134239 0.000000e+00 4621.0
24 TraesCS3D01G172500 chr5B 92.506 3176 235 2 1226 4400 157019339 157022512 0.000000e+00 4543.0
25 TraesCS3D01G172500 chr5B 91.418 804 67 2 1 803 640559259 640560061 0.000000e+00 1101.0
26 TraesCS3D01G172500 chr5B 85.976 164 13 6 5305 5463 556949075 556949233 3.430000e-37 167.0
27 TraesCS3D01G172500 chr5B 85.897 156 17 3 5306 5461 266358649 266358799 1.590000e-35 161.0
28 TraesCS3D01G172500 chr5B 85.897 156 17 3 5306 5461 266361208 266361358 1.590000e-35 161.0
29 TraesCS3D01G172500 chr2A 94.983 2910 141 4 1226 4132 221082834 221079927 0.000000e+00 4560.0
30 TraesCS3D01G172500 chr2A 84.663 163 15 4 5306 5467 418618399 418618246 2.670000e-33 154.0
31 TraesCS3D01G172500 chr4B 92.317 3176 241 2 1226 4400 363661939 363665112 0.000000e+00 4510.0
32 TraesCS3D01G172500 chr4B 83.285 347 53 4 882 1226 86652250 86651907 1.160000e-81 315.0
33 TraesCS3D01G172500 chr4A 91.918 3180 231 15 1226 4400 210196800 210199958 0.000000e+00 4425.0
34 TraesCS3D01G172500 chr4A 87.586 145 15 3 4410 4552 153781534 153781677 1.230000e-36 165.0
35 TraesCS3D01G172500 chr4A 77.419 124 26 2 3466 3588 512052785 512052907 7.690000e-09 73.1
36 TraesCS3D01G172500 chr7D 94.636 2461 129 2 1226 3685 176516407 176513949 0.000000e+00 3810.0
37 TraesCS3D01G172500 chr7D 88.027 877 104 1 1 876 515488073 515488949 0.000000e+00 1037.0
38 TraesCS3D01G172500 chr7D 94.044 638 38 0 3763 4400 176513952 176513315 0.000000e+00 968.0
39 TraesCS3D01G172500 chr7D 85.561 374 32 10 4560 4912 631682378 631682750 6.770000e-99 372.0
40 TraesCS3D01G172500 chr7D 70.528 1554 395 42 2440 3968 473867607 473869122 1.960000e-69 274.0
41 TraesCS3D01G172500 chr7D 84.337 166 18 6 5307 5468 83654271 83654432 7.420000e-34 156.0
42 TraesCS3D01G172500 chr7D 84.615 156 20 4 5307 5461 498489405 498489557 9.600000e-33 152.0
43 TraesCS3D01G172500 chr6D 91.240 879 73 3 1 876 380998268 380999145 0.000000e+00 1194.0
44 TraesCS3D01G172500 chr6D 90.511 822 76 2 1 821 38708264 38707444 0.000000e+00 1085.0
45 TraesCS3D01G172500 chr6D 86.053 380 27 4 4553 4912 380999128 380999501 8.690000e-103 385.0
46 TraesCS3D01G172500 chr6D 84.062 389 27 6 4588 4943 318082107 318081721 5.310000e-90 342.0
47 TraesCS3D01G172500 chr6D 89.333 150 14 2 4409 4556 443346494 443346345 2.630000e-43 187.0
48 TraesCS3D01G172500 chr6D 89.333 150 14 2 4409 4556 443450662 443450513 2.630000e-43 187.0
49 TraesCS3D01G172500 chr6D 97.297 37 1 0 4903 4939 38707136 38707100 4.630000e-06 63.9
50 TraesCS3D01G172500 chr2B 90.286 875 78 6 4 876 787138378 787137509 0.000000e+00 1138.0
51 TraesCS3D01G172500 chr2B 89.522 878 88 4 1 876 658602446 658601571 0.000000e+00 1109.0
52 TraesCS3D01G172500 chr2B 87.339 387 25 10 4553 4917 787137526 787137142 6.630000e-114 422.0
53 TraesCS3D01G172500 chr2B 86.305 387 28 12 4553 4917 236779252 236778869 1.120000e-106 398.0
54 TraesCS3D01G172500 chr2B 92.000 150 9 2 4765 4912 114524974 114524826 2.020000e-49 207.0
55 TraesCS3D01G172500 chr2B 92.000 150 9 2 4765 4912 114526940 114526792 2.020000e-49 207.0
56 TraesCS3D01G172500 chr5D 88.155 878 100 4 1 876 63449821 63450696 0.000000e+00 1042.0
57 TraesCS3D01G172500 chr5D 82.000 400 24 7 4553 4912 60258262 60258653 4.190000e-76 296.0
58 TraesCS3D01G172500 chr3B 87.730 815 57 14 4553 5327 223657632 223658443 0.000000e+00 911.0
59 TraesCS3D01G172500 chr3B 87.239 815 56 11 4553 5327 224272092 224272898 0.000000e+00 885.0
60 TraesCS3D01G172500 chr3B 88.235 221 14 6 5323 5532 223658563 223658782 2.560000e-63 254.0
61 TraesCS3D01G172500 chr3B 87.368 95 8 2 5078 5172 223942621 223942711 7.580000e-19 106.0
62 TraesCS3D01G172500 chr3B 94.118 68 3 1 5466 5532 223964714 223964781 9.800000e-18 102.0
63 TraesCS3D01G172500 chr2D 88.761 347 36 2 882 1226 622368763 622368418 6.630000e-114 422.0
64 TraesCS3D01G172500 chr2D 87.919 149 15 3 4409 4555 104916799 104916946 7.370000e-39 172.0
65 TraesCS3D01G172500 chr2D 87.162 148 16 3 4409 4554 89200146 89200000 1.230000e-36 165.0
66 TraesCS3D01G172500 chrUn 86.431 339 28 6 4554 4874 83902681 83903019 6.820000e-94 355.0
67 TraesCS3D01G172500 chrUn 86.431 339 28 6 4554 4874 303054902 303055240 6.820000e-94 355.0
68 TraesCS3D01G172500 chrUn 86.257 342 29 6 4554 4877 343440334 343439993 6.820000e-94 355.0
69 TraesCS3D01G172500 chr1A 84.726 347 50 2 882 1226 291220064 291220409 1.480000e-90 344.0
70 TraesCS3D01G172500 chr1A 83.621 348 50 5 883 1226 455014663 455014319 2.490000e-83 320.0
71 TraesCS3D01G172500 chr7B 82.368 397 51 9 4557 4941 203209270 203209659 1.490000e-85 327.0
72 TraesCS3D01G172500 chr5A 87.919 149 14 3 4409 4554 306498105 306498252 7.370000e-39 172.0
73 TraesCS3D01G172500 chr6B 86.395 147 19 1 4409 4554 250589460 250589606 5.740000e-35 159.0
74 TraesCS3D01G172500 chr6B 94.444 36 2 0 4901 4936 57219429 57219464 7.740000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G172500 chr3D 153073044 153078575 5531 False 10216.00 10216 100.0000 1 5532 1 chr3D.!!$F1 5531
1 TraesCS3D01G172500 chr3D 152820671 152825090 4419 False 266.55 436 90.3185 4939 5532 2 chr3D.!!$F2 593
2 TraesCS3D01G172500 chr4D 323555885 323559059 3174 True 5105.00 5105 95.6880 1226 4400 1 chr4D.!!$R2 3174
3 TraesCS3D01G172500 chr4D 91235911 91237122 1211 True 756.00 1116 88.2055 1 4917 2 chr4D.!!$R3 4916
4 TraesCS3D01G172500 chr7A 158660425 158663609 3184 False 4787.00 4787 93.8580 1226 4400 1 chr7A.!!$F1 3174
5 TraesCS3D01G172500 chr3A 391918681 391921850 3169 True 4706.00 4706 93.4530 1226 4400 1 chr3A.!!$R3 3174
6 TraesCS3D01G172500 chr3A 177111054 177112261 1207 True 720.00 800 88.4515 4409 5532 2 chr3A.!!$R6 1123
7 TraesCS3D01G172500 chr1B 442069424 442072592 3168 False 4673.00 4673 93.2620 1226 4400 1 chr1B.!!$F2 3174
8 TraesCS3D01G172500 chr1B 642763426 642764293 867 True 1112.00 1112 89.7380 1 876 1 chr1B.!!$R2 875
9 TraesCS3D01G172500 chr5B 392134239 392137406 3167 True 4621.00 4621 92.9790 1226 4400 1 chr5B.!!$R1 3174
10 TraesCS3D01G172500 chr5B 157019339 157022512 3173 False 4543.00 4543 92.5060 1226 4400 1 chr5B.!!$F1 3174
11 TraesCS3D01G172500 chr5B 640559259 640560061 802 False 1101.00 1101 91.4180 1 803 1 chr5B.!!$F3 802
12 TraesCS3D01G172500 chr2A 221079927 221082834 2907 True 4560.00 4560 94.9830 1226 4132 1 chr2A.!!$R1 2906
13 TraesCS3D01G172500 chr4B 363661939 363665112 3173 False 4510.00 4510 92.3170 1226 4400 1 chr4B.!!$F1 3174
14 TraesCS3D01G172500 chr4A 210196800 210199958 3158 False 4425.00 4425 91.9180 1226 4400 1 chr4A.!!$F2 3174
15 TraesCS3D01G172500 chr7D 176513315 176516407 3092 True 2389.00 3810 94.3400 1226 4400 2 chr7D.!!$R1 3174
16 TraesCS3D01G172500 chr7D 515488073 515488949 876 False 1037.00 1037 88.0270 1 876 1 chr7D.!!$F4 875
17 TraesCS3D01G172500 chr7D 473867607 473869122 1515 False 274.00 274 70.5280 2440 3968 1 chr7D.!!$F2 1528
18 TraesCS3D01G172500 chr6D 380998268 380999501 1233 False 789.50 1194 88.6465 1 4912 2 chr6D.!!$F1 4911
19 TraesCS3D01G172500 chr6D 38707100 38708264 1164 True 574.45 1085 93.9040 1 4939 2 chr6D.!!$R4 4938
20 TraesCS3D01G172500 chr2B 658601571 658602446 875 True 1109.00 1109 89.5220 1 876 1 chr2B.!!$R2 875
21 TraesCS3D01G172500 chr2B 787137142 787138378 1236 True 780.00 1138 88.8125 4 4917 2 chr2B.!!$R4 4913
22 TraesCS3D01G172500 chr2B 114524826 114526940 2114 True 207.00 207 92.0000 4765 4912 2 chr2B.!!$R3 147
23 TraesCS3D01G172500 chr5D 63449821 63450696 875 False 1042.00 1042 88.1550 1 876 1 chr5D.!!$F2 875
24 TraesCS3D01G172500 chr3B 224272092 224272898 806 False 885.00 885 87.2390 4553 5327 1 chr3B.!!$F3 774
25 TraesCS3D01G172500 chr3B 223657632 223658782 1150 False 582.50 911 87.9825 4553 5532 2 chr3B.!!$F4 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 949 0.033504 GCGGTCCTGAGAGACAACAA 59.966 55.000 4.03 0.0 38.59 2.83 F
1147 1153 0.100325 TATGGCCGCAGCAATTTTCG 59.900 50.000 0.00 0.0 42.56 3.46 F
1151 1157 0.179166 GCCGCAGCAATTTTCGATGA 60.179 50.000 0.00 0.0 39.53 2.92 F
1924 1931 0.674581 CTTCCAGCGAATGCAGTCCA 60.675 55.000 8.83 0.0 46.23 4.02 F
3059 3072 1.144936 CAGGAGAAGGGCGATCCAC 59.855 63.158 0.00 0.0 38.24 4.02 F
3616 3633 1.001641 CCTCCAGGTTTGAGGGCTG 60.002 63.158 0.00 0.0 44.73 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 2178 0.537188 CTTCGCCTCCACTACCATGT 59.463 55.000 0.00 0.00 0.00 3.21 R
2237 2245 0.965439 GAGTCGATGATAGCAGGGCT 59.035 55.000 0.00 0.00 43.41 5.19 R
2552 2560 1.302832 CAAGGTCGCTGGGAAGCTT 60.303 57.895 0.00 0.00 33.72 3.74 R
3616 3633 0.716108 CGACCTGTCGCAGTTCATTC 59.284 55.000 6.77 0.00 46.50 2.67 R
4337 4373 1.654023 AAATTTACCTCAGCGGCCGC 61.654 55.000 42.34 42.34 42.33 6.53 R
5480 10014 0.249031 GCCTGACAGTGCCAAACAAC 60.249 55.000 0.93 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.706035 AGAAATGCATCTGGAGAGATCAC 58.294 43.478 0.00 0.00 36.75 3.06
44 45 5.601729 AGAAATGCATCTGGAGAGATCACTA 59.398 40.000 0.00 0.00 36.75 2.74
82 83 0.447801 GCATTGCGGATGTTCGAGTT 59.552 50.000 0.00 0.00 38.07 3.01
94 95 3.680490 TGTTCGAGTTTTGGCATATGGA 58.320 40.909 4.56 0.00 0.00 3.41
145 146 7.958180 ATGTACGCATTGGTGAAGACACAATT 61.958 38.462 0.00 0.00 39.29 2.32
155 156 3.007506 TGAAGACACAATTTCGGAGGCTA 59.992 43.478 0.00 0.00 0.00 3.93
209 210 1.344065 TGGCCCGAAGTACTTGAGAA 58.656 50.000 14.14 0.00 0.00 2.87
321 323 3.588842 TGGAGATGGAAGAATTGTCCTGT 59.411 43.478 6.38 0.00 36.03 4.00
333 335 1.507140 TGTCCTGTGAGTTGGAAGGT 58.493 50.000 0.00 0.00 33.72 3.50
335 337 2.241176 TGTCCTGTGAGTTGGAAGGTTT 59.759 45.455 0.00 0.00 33.72 3.27
404 406 4.380531 TGCATCGAAGGATCTTTGGATAC 58.619 43.478 13.46 9.60 33.06 2.24
424 426 6.316390 GGATACGACATTCATTCTTTGGTCTT 59.684 38.462 0.00 0.00 0.00 3.01
450 452 3.427233 GGCTCTCACAATGACTTGAATGC 60.427 47.826 0.00 0.00 36.20 3.56
624 630 6.994221 TCCAAAAGGTAACAAAAACACTCAA 58.006 32.000 0.00 0.00 41.41 3.02
627 633 8.174422 CCAAAAGGTAACAAAAACACTCAATTG 58.826 33.333 0.00 0.00 41.41 2.32
667 673 4.214310 TGCAAGGAAAGATGTGGAAAGAA 58.786 39.130 0.00 0.00 0.00 2.52
742 748 2.576191 TGGAACTCCAAGGTTCTATGGG 59.424 50.000 0.00 0.00 44.35 4.00
753 759 4.047166 AGGTTCTATGGGGAATCATGACA 58.953 43.478 0.00 0.00 0.00 3.58
807 813 5.828328 TGAAGACGAGAGAGATATGCCTTAA 59.172 40.000 0.00 0.00 0.00 1.85
836 842 1.549170 GTACATCACCAACGGGACTCT 59.451 52.381 0.00 0.00 38.05 3.24
876 882 7.381766 TGATACAAACAGGATCTTGACATTG 57.618 36.000 12.40 14.42 0.00 2.82
877 883 6.942005 TGATACAAACAGGATCTTGACATTGT 59.058 34.615 21.64 21.64 34.48 2.71
878 884 8.100164 TGATACAAACAGGATCTTGACATTGTA 58.900 33.333 23.35 23.35 36.71 2.41
879 885 6.560253 ACAAACAGGATCTTGACATTGTAC 57.440 37.500 12.40 0.00 0.00 2.90
880 886 5.473504 ACAAACAGGATCTTGACATTGTACC 59.526 40.000 12.40 0.00 0.00 3.34
881 887 5.505181 AACAGGATCTTGACATTGTACCT 57.495 39.130 12.40 0.00 0.00 3.08
882 888 4.836825 ACAGGATCTTGACATTGTACCTG 58.163 43.478 12.40 0.00 45.93 4.00
883 889 4.532126 ACAGGATCTTGACATTGTACCTGA 59.468 41.667 12.40 6.65 44.08 3.86
884 890 5.190528 ACAGGATCTTGACATTGTACCTGAT 59.809 40.000 12.40 9.87 44.08 2.90
885 891 5.526479 CAGGATCTTGACATTGTACCTGATG 59.474 44.000 0.00 0.00 44.08 3.07
886 892 4.274459 GGATCTTGACATTGTACCTGATGC 59.726 45.833 0.00 0.00 0.00 3.91
887 893 4.558226 TCTTGACATTGTACCTGATGCT 57.442 40.909 0.00 0.00 0.00 3.79
888 894 4.910195 TCTTGACATTGTACCTGATGCTT 58.090 39.130 0.00 0.00 0.00 3.91
889 895 4.937620 TCTTGACATTGTACCTGATGCTTC 59.062 41.667 0.00 0.00 0.00 3.86
890 896 4.558226 TGACATTGTACCTGATGCTTCT 57.442 40.909 0.88 0.00 0.00 2.85
891 897 4.910195 TGACATTGTACCTGATGCTTCTT 58.090 39.130 0.88 0.00 0.00 2.52
892 898 5.316167 TGACATTGTACCTGATGCTTCTTT 58.684 37.500 0.88 0.00 0.00 2.52
893 899 5.769662 TGACATTGTACCTGATGCTTCTTTT 59.230 36.000 0.88 0.00 0.00 2.27
894 900 6.017400 ACATTGTACCTGATGCTTCTTTTG 57.983 37.500 0.88 0.00 0.00 2.44
895 901 5.769662 ACATTGTACCTGATGCTTCTTTTGA 59.230 36.000 0.88 0.00 0.00 2.69
896 902 6.435277 ACATTGTACCTGATGCTTCTTTTGAT 59.565 34.615 0.88 0.00 0.00 2.57
897 903 6.500684 TTGTACCTGATGCTTCTTTTGATC 57.499 37.500 0.88 0.00 0.00 2.92
898 904 5.559770 TGTACCTGATGCTTCTTTTGATCA 58.440 37.500 0.00 0.00 0.00 2.92
899 905 5.412594 TGTACCTGATGCTTCTTTTGATCAC 59.587 40.000 0.00 0.00 0.00 3.06
900 906 3.438087 ACCTGATGCTTCTTTTGATCACG 59.562 43.478 0.00 0.00 0.00 4.35
901 907 3.686241 CCTGATGCTTCTTTTGATCACGA 59.314 43.478 0.00 0.00 0.00 4.35
902 908 4.436584 CCTGATGCTTCTTTTGATCACGAC 60.437 45.833 0.00 0.00 0.00 4.34
903 909 4.064388 TGATGCTTCTTTTGATCACGACA 58.936 39.130 0.00 0.00 0.00 4.35
904 910 4.696877 TGATGCTTCTTTTGATCACGACAT 59.303 37.500 0.00 0.00 0.00 3.06
905 911 4.408993 TGCTTCTTTTGATCACGACATG 57.591 40.909 0.00 0.00 0.00 3.21
906 912 3.166657 GCTTCTTTTGATCACGACATGC 58.833 45.455 0.00 0.00 0.00 4.06
907 913 3.120060 GCTTCTTTTGATCACGACATGCT 60.120 43.478 0.00 0.00 0.00 3.79
908 914 4.400845 CTTCTTTTGATCACGACATGCTG 58.599 43.478 0.00 0.00 0.00 4.41
909 915 3.663025 TCTTTTGATCACGACATGCTGA 58.337 40.909 0.00 0.00 0.00 4.26
910 916 4.064388 TCTTTTGATCACGACATGCTGAA 58.936 39.130 0.00 0.00 0.00 3.02
911 917 4.152938 TCTTTTGATCACGACATGCTGAAG 59.847 41.667 0.00 0.00 0.00 3.02
912 918 2.014335 TGATCACGACATGCTGAAGG 57.986 50.000 0.00 0.00 0.00 3.46
913 919 1.293924 GATCACGACATGCTGAAGGG 58.706 55.000 0.00 0.00 0.00 3.95
914 920 0.615331 ATCACGACATGCTGAAGGGT 59.385 50.000 0.00 0.00 0.00 4.34
915 921 0.320683 TCACGACATGCTGAAGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
916 922 1.672356 ACGACATGCTGAAGGGTGC 60.672 57.895 0.00 0.00 0.00 5.01
917 923 1.672030 CGACATGCTGAAGGGTGCA 60.672 57.895 0.00 0.00 43.67 4.57
918 924 1.236616 CGACATGCTGAAGGGTGCAA 61.237 55.000 0.00 0.00 42.74 4.08
919 925 1.180029 GACATGCTGAAGGGTGCAAT 58.820 50.000 0.00 0.00 42.74 3.56
920 926 2.368439 GACATGCTGAAGGGTGCAATA 58.632 47.619 0.00 0.00 42.74 1.90
921 927 2.357009 GACATGCTGAAGGGTGCAATAG 59.643 50.000 0.00 0.00 42.74 1.73
922 928 1.679680 CATGCTGAAGGGTGCAATAGG 59.320 52.381 0.00 0.00 42.74 2.57
923 929 0.034186 TGCTGAAGGGTGCAATAGGG 60.034 55.000 0.00 0.00 36.15 3.53
924 930 0.753111 GCTGAAGGGTGCAATAGGGG 60.753 60.000 0.00 0.00 0.00 4.79
925 931 0.753111 CTGAAGGGTGCAATAGGGGC 60.753 60.000 0.00 0.00 0.00 5.80
926 932 1.823899 GAAGGGTGCAATAGGGGCG 60.824 63.158 0.00 0.00 0.00 6.13
927 933 3.358932 AAGGGTGCAATAGGGGCGG 62.359 63.158 0.00 0.00 0.00 6.13
928 934 4.123545 GGGTGCAATAGGGGCGGT 62.124 66.667 0.00 0.00 0.00 5.68
929 935 2.516225 GGTGCAATAGGGGCGGTC 60.516 66.667 0.00 0.00 0.00 4.79
930 936 2.516225 GTGCAATAGGGGCGGTCC 60.516 66.667 0.00 0.00 0.00 4.46
931 937 2.690881 TGCAATAGGGGCGGTCCT 60.691 61.111 0.00 0.00 40.79 3.85
932 938 2.203209 GCAATAGGGGCGGTCCTG 60.203 66.667 0.00 0.00 37.75 3.86
933 939 2.742116 GCAATAGGGGCGGTCCTGA 61.742 63.158 0.00 0.00 37.75 3.86
934 940 1.447643 CAATAGGGGCGGTCCTGAG 59.552 63.158 0.00 0.00 37.75 3.35
935 941 1.048724 CAATAGGGGCGGTCCTGAGA 61.049 60.000 0.00 0.00 37.75 3.27
936 942 0.760945 AATAGGGGCGGTCCTGAGAG 60.761 60.000 0.00 0.00 37.75 3.20
937 943 1.656092 ATAGGGGCGGTCCTGAGAGA 61.656 60.000 0.00 0.00 37.75 3.10
938 944 2.569218 TAGGGGCGGTCCTGAGAGAC 62.569 65.000 0.00 0.00 37.75 3.36
939 945 2.680352 GGGCGGTCCTGAGAGACA 60.680 66.667 0.00 0.00 38.59 3.41
940 946 2.283529 GGGCGGTCCTGAGAGACAA 61.284 63.158 0.00 0.00 38.59 3.18
941 947 1.079750 GGCGGTCCTGAGAGACAAC 60.080 63.158 4.03 0.00 38.59 3.32
942 948 1.666011 GCGGTCCTGAGAGACAACA 59.334 57.895 4.03 0.00 38.59 3.33
943 949 0.033504 GCGGTCCTGAGAGACAACAA 59.966 55.000 4.03 0.00 38.59 2.83
944 950 1.540363 GCGGTCCTGAGAGACAACAAA 60.540 52.381 4.03 0.00 38.59 2.83
945 951 2.408050 CGGTCCTGAGAGACAACAAAG 58.592 52.381 4.03 0.00 38.59 2.77
946 952 2.772287 GGTCCTGAGAGACAACAAAGG 58.228 52.381 4.03 0.00 38.59 3.11
947 953 2.104963 GGTCCTGAGAGACAACAAAGGT 59.895 50.000 4.03 0.00 38.59 3.50
948 954 3.323979 GGTCCTGAGAGACAACAAAGGTA 59.676 47.826 4.03 0.00 38.59 3.08
949 955 4.561105 GTCCTGAGAGACAACAAAGGTAG 58.439 47.826 0.00 0.00 36.73 3.18
950 956 3.578716 TCCTGAGAGACAACAAAGGTAGG 59.421 47.826 0.00 0.00 0.00 3.18
951 957 3.325135 CCTGAGAGACAACAAAGGTAGGT 59.675 47.826 0.00 0.00 0.00 3.08
952 958 4.202367 CCTGAGAGACAACAAAGGTAGGTT 60.202 45.833 0.00 0.00 0.00 3.50
953 959 5.367945 TGAGAGACAACAAAGGTAGGTTT 57.632 39.130 0.00 0.00 0.00 3.27
954 960 5.751586 TGAGAGACAACAAAGGTAGGTTTT 58.248 37.500 0.00 0.00 0.00 2.43
955 961 6.891388 TGAGAGACAACAAAGGTAGGTTTTA 58.109 36.000 0.00 0.00 0.00 1.52
956 962 7.514721 TGAGAGACAACAAAGGTAGGTTTTAT 58.485 34.615 0.00 0.00 0.00 1.40
957 963 7.660208 TGAGAGACAACAAAGGTAGGTTTTATC 59.340 37.037 0.00 0.00 0.00 1.75
958 964 6.649557 AGAGACAACAAAGGTAGGTTTTATCG 59.350 38.462 0.00 0.00 0.00 2.92
959 965 5.180680 AGACAACAAAGGTAGGTTTTATCGC 59.819 40.000 0.00 0.00 0.00 4.58
960 966 5.067954 ACAACAAAGGTAGGTTTTATCGCT 58.932 37.500 0.00 0.00 0.00 4.93
961 967 6.232692 ACAACAAAGGTAGGTTTTATCGCTA 58.767 36.000 0.00 0.00 0.00 4.26
962 968 6.370718 ACAACAAAGGTAGGTTTTATCGCTAG 59.629 38.462 0.00 0.00 0.00 3.42
963 969 6.290294 ACAAAGGTAGGTTTTATCGCTAGA 57.710 37.500 0.00 0.00 0.00 2.43
964 970 6.338937 ACAAAGGTAGGTTTTATCGCTAGAG 58.661 40.000 0.00 0.00 0.00 2.43
965 971 5.532664 AAGGTAGGTTTTATCGCTAGAGG 57.467 43.478 0.00 0.00 0.00 3.69
966 972 4.801164 AGGTAGGTTTTATCGCTAGAGGA 58.199 43.478 0.00 0.00 0.00 3.71
967 973 5.206587 AGGTAGGTTTTATCGCTAGAGGAA 58.793 41.667 0.00 0.00 0.00 3.36
968 974 5.659971 AGGTAGGTTTTATCGCTAGAGGAAA 59.340 40.000 0.00 0.00 0.00 3.13
969 975 6.326843 AGGTAGGTTTTATCGCTAGAGGAAAT 59.673 38.462 0.00 0.00 0.00 2.17
970 976 6.424207 GGTAGGTTTTATCGCTAGAGGAAATG 59.576 42.308 0.00 0.00 0.00 2.32
971 977 5.368989 AGGTTTTATCGCTAGAGGAAATGG 58.631 41.667 0.00 0.00 0.00 3.16
972 978 4.515567 GGTTTTATCGCTAGAGGAAATGGG 59.484 45.833 0.00 0.00 0.00 4.00
973 979 5.365619 GTTTTATCGCTAGAGGAAATGGGA 58.634 41.667 0.00 0.00 0.00 4.37
974 980 5.623956 TTTATCGCTAGAGGAAATGGGAA 57.376 39.130 0.00 0.00 0.00 3.97
975 981 3.760580 ATCGCTAGAGGAAATGGGAAG 57.239 47.619 0.00 0.00 0.00 3.46
976 982 2.747177 TCGCTAGAGGAAATGGGAAGA 58.253 47.619 0.00 0.00 0.00 2.87
977 983 3.309296 TCGCTAGAGGAAATGGGAAGAT 58.691 45.455 0.00 0.00 0.00 2.40
978 984 3.711704 TCGCTAGAGGAAATGGGAAGATT 59.288 43.478 0.00 0.00 0.00 2.40
979 985 3.812053 CGCTAGAGGAAATGGGAAGATTG 59.188 47.826 0.00 0.00 0.00 2.67
980 986 4.443457 CGCTAGAGGAAATGGGAAGATTGA 60.443 45.833 0.00 0.00 0.00 2.57
981 987 4.819088 GCTAGAGGAAATGGGAAGATTGAC 59.181 45.833 0.00 0.00 0.00 3.18
982 988 5.397334 GCTAGAGGAAATGGGAAGATTGACT 60.397 44.000 0.00 0.00 0.00 3.41
983 989 6.183361 GCTAGAGGAAATGGGAAGATTGACTA 60.183 42.308 0.00 0.00 0.00 2.59
984 990 6.838401 AGAGGAAATGGGAAGATTGACTAT 57.162 37.500 0.00 0.00 0.00 2.12
985 991 7.218314 AGAGGAAATGGGAAGATTGACTATT 57.782 36.000 0.00 0.00 0.00 1.73
986 992 7.059156 AGAGGAAATGGGAAGATTGACTATTG 58.941 38.462 0.00 0.00 0.00 1.90
987 993 6.735556 AGGAAATGGGAAGATTGACTATTGT 58.264 36.000 0.00 0.00 0.00 2.71
988 994 6.604795 AGGAAATGGGAAGATTGACTATTGTG 59.395 38.462 0.00 0.00 0.00 3.33
989 995 5.841957 AATGGGAAGATTGACTATTGTGC 57.158 39.130 0.00 0.00 0.00 4.57
990 996 3.270027 TGGGAAGATTGACTATTGTGCG 58.730 45.455 0.00 0.00 0.00 5.34
991 997 2.614057 GGGAAGATTGACTATTGTGCGG 59.386 50.000 0.00 0.00 0.00 5.69
992 998 3.531538 GGAAGATTGACTATTGTGCGGA 58.468 45.455 0.00 0.00 0.00 5.54
993 999 4.130118 GGAAGATTGACTATTGTGCGGAT 58.870 43.478 0.00 0.00 0.00 4.18
994 1000 4.024556 GGAAGATTGACTATTGTGCGGATG 60.025 45.833 0.00 0.00 0.00 3.51
995 1001 4.142609 AGATTGACTATTGTGCGGATGT 57.857 40.909 0.00 0.00 0.00 3.06
996 1002 4.517285 AGATTGACTATTGTGCGGATGTT 58.483 39.130 0.00 0.00 0.00 2.71
997 1003 4.572389 AGATTGACTATTGTGCGGATGTTC 59.428 41.667 0.00 0.00 0.00 3.18
998 1004 3.610040 TGACTATTGTGCGGATGTTCT 57.390 42.857 0.00 0.00 0.00 3.01
999 1005 3.261580 TGACTATTGTGCGGATGTTCTG 58.738 45.455 0.00 0.00 0.00 3.02
1000 1006 3.056179 TGACTATTGTGCGGATGTTCTGA 60.056 43.478 0.00 0.00 0.00 3.27
1001 1007 4.122776 GACTATTGTGCGGATGTTCTGAT 58.877 43.478 0.00 0.00 0.00 2.90
1002 1008 3.873361 ACTATTGTGCGGATGTTCTGATG 59.127 43.478 0.00 0.00 0.00 3.07
1003 1009 1.452110 TTGTGCGGATGTTCTGATGG 58.548 50.000 0.00 0.00 0.00 3.51
1004 1010 1.026182 TGTGCGGATGTTCTGATGGC 61.026 55.000 0.00 0.00 0.00 4.40
1005 1011 1.026182 GTGCGGATGTTCTGATGGCA 61.026 55.000 0.00 0.00 0.00 4.92
1006 1012 0.745486 TGCGGATGTTCTGATGGCAG 60.745 55.000 0.00 0.00 43.67 4.85
1029 1035 3.156511 GCCTTAGCTCTCAAATTTGGC 57.843 47.619 17.90 13.16 35.50 4.52
1030 1036 2.159184 GCCTTAGCTCTCAAATTTGGCC 60.159 50.000 17.90 0.00 35.50 5.36
1031 1037 3.359950 CCTTAGCTCTCAAATTTGGCCT 58.640 45.455 17.90 10.98 0.00 5.19
1032 1038 4.526970 CCTTAGCTCTCAAATTTGGCCTA 58.473 43.478 17.90 10.13 0.00 3.93
1033 1039 4.949856 CCTTAGCTCTCAAATTTGGCCTAA 59.050 41.667 17.90 15.56 0.00 2.69
1034 1040 5.163612 CCTTAGCTCTCAAATTTGGCCTAAC 60.164 44.000 17.90 3.97 0.00 2.34
1035 1041 3.766545 AGCTCTCAAATTTGGCCTAACA 58.233 40.909 17.90 0.00 0.00 2.41
1036 1042 3.507622 AGCTCTCAAATTTGGCCTAACAC 59.492 43.478 17.90 1.07 0.00 3.32
1037 1043 3.507622 GCTCTCAAATTTGGCCTAACACT 59.492 43.478 17.90 0.00 0.00 3.55
1038 1044 4.700213 GCTCTCAAATTTGGCCTAACACTA 59.300 41.667 17.90 0.00 0.00 2.74
1039 1045 5.163713 GCTCTCAAATTTGGCCTAACACTAG 60.164 44.000 17.90 4.36 0.00 2.57
1040 1046 4.700213 TCTCAAATTTGGCCTAACACTAGC 59.300 41.667 17.90 0.00 0.00 3.42
1041 1047 4.402829 TCAAATTTGGCCTAACACTAGCA 58.597 39.130 17.90 0.00 0.00 3.49
1042 1048 4.217550 TCAAATTTGGCCTAACACTAGCAC 59.782 41.667 17.90 0.00 0.00 4.40
1043 1049 2.940994 TTTGGCCTAACACTAGCACA 57.059 45.000 3.32 0.00 0.00 4.57
1044 1050 2.940994 TTGGCCTAACACTAGCACAA 57.059 45.000 3.32 0.00 0.00 3.33
1045 1051 2.940994 TGGCCTAACACTAGCACAAA 57.059 45.000 3.32 0.00 0.00 2.83
1046 1052 2.778299 TGGCCTAACACTAGCACAAAG 58.222 47.619 3.32 0.00 0.00 2.77
1047 1053 2.084546 GGCCTAACACTAGCACAAAGG 58.915 52.381 0.00 0.00 0.00 3.11
1048 1054 2.084546 GCCTAACACTAGCACAAAGGG 58.915 52.381 0.00 0.00 0.00 3.95
1049 1055 2.084546 CCTAACACTAGCACAAAGGGC 58.915 52.381 0.00 0.00 0.00 5.19
1050 1056 1.732259 CTAACACTAGCACAAAGGGCG 59.268 52.381 0.00 0.00 36.08 6.13
1051 1057 0.889186 AACACTAGCACAAAGGGCGG 60.889 55.000 0.00 0.00 36.08 6.13
1052 1058 2.040544 CACTAGCACAAAGGGCGGG 61.041 63.158 0.00 0.00 36.08 6.13
1053 1059 2.438434 CTAGCACAAAGGGCGGGG 60.438 66.667 0.00 0.00 36.08 5.73
1054 1060 3.253838 TAGCACAAAGGGCGGGGT 61.254 61.111 0.00 0.00 36.08 4.95
1055 1061 3.561120 TAGCACAAAGGGCGGGGTG 62.561 63.158 0.00 0.00 36.08 4.61
1057 1063 2.432563 CACAAAGGGCGGGGTGTA 59.567 61.111 0.00 0.00 0.00 2.90
1058 1064 1.228306 CACAAAGGGCGGGGTGTAA 60.228 57.895 0.00 0.00 0.00 2.41
1059 1065 0.610785 CACAAAGGGCGGGGTGTAAT 60.611 55.000 0.00 0.00 0.00 1.89
1060 1066 0.323087 ACAAAGGGCGGGGTGTAATC 60.323 55.000 0.00 0.00 0.00 1.75
1061 1067 0.322997 CAAAGGGCGGGGTGTAATCA 60.323 55.000 0.00 0.00 0.00 2.57
1062 1068 0.323087 AAAGGGCGGGGTGTAATCAC 60.323 55.000 0.00 0.00 43.19 3.06
1084 1090 8.506168 TCACCTTATCATTAATTCAGACAACC 57.494 34.615 0.00 0.00 0.00 3.77
1085 1091 8.328758 TCACCTTATCATTAATTCAGACAACCT 58.671 33.333 0.00 0.00 0.00 3.50
1086 1092 8.400947 CACCTTATCATTAATTCAGACAACCTG 58.599 37.037 0.00 0.00 44.27 4.00
1087 1093 7.557719 ACCTTATCATTAATTCAGACAACCTGG 59.442 37.037 0.00 0.00 43.12 4.45
1088 1094 7.775093 CCTTATCATTAATTCAGACAACCTGGA 59.225 37.037 0.00 0.00 43.12 3.86
1089 1095 9.177608 CTTATCATTAATTCAGACAACCTGGAA 57.822 33.333 0.00 0.00 43.12 3.53
1090 1096 7.636150 ATCATTAATTCAGACAACCTGGAAG 57.364 36.000 0.00 0.00 43.12 3.46
1091 1097 6.542821 TCATTAATTCAGACAACCTGGAAGT 58.457 36.000 0.00 0.00 43.12 3.01
1092 1098 7.685481 TCATTAATTCAGACAACCTGGAAGTA 58.315 34.615 0.00 0.00 43.12 2.24
1093 1099 8.160765 TCATTAATTCAGACAACCTGGAAGTAA 58.839 33.333 0.00 0.00 43.12 2.24
1094 1100 8.960591 CATTAATTCAGACAACCTGGAAGTAAT 58.039 33.333 0.00 0.00 43.12 1.89
1095 1101 8.934023 TTAATTCAGACAACCTGGAAGTAATT 57.066 30.769 0.00 4.61 43.12 1.40
1096 1102 6.824305 ATTCAGACAACCTGGAAGTAATTG 57.176 37.500 0.00 0.00 43.12 2.32
1097 1103 5.560722 TCAGACAACCTGGAAGTAATTGA 57.439 39.130 0.00 1.40 43.12 2.57
1098 1104 5.305585 TCAGACAACCTGGAAGTAATTGAC 58.694 41.667 0.00 0.00 43.12 3.18
1099 1105 5.063204 CAGACAACCTGGAAGTAATTGACA 58.937 41.667 0.00 0.00 39.23 3.58
1100 1106 5.049405 CAGACAACCTGGAAGTAATTGACAC 60.049 44.000 0.00 0.00 39.23 3.67
1101 1107 5.048846 ACAACCTGGAAGTAATTGACACT 57.951 39.130 0.00 0.00 0.00 3.55
1102 1108 6.042781 AGACAACCTGGAAGTAATTGACACTA 59.957 38.462 0.00 0.00 0.00 2.74
1103 1109 6.779860 ACAACCTGGAAGTAATTGACACTAT 58.220 36.000 0.00 0.00 0.00 2.12
1104 1110 6.655003 ACAACCTGGAAGTAATTGACACTATG 59.345 38.462 0.00 0.00 0.00 2.23
1105 1111 5.186198 ACCTGGAAGTAATTGACACTATGC 58.814 41.667 0.00 0.00 0.00 3.14
1106 1112 5.185454 CCTGGAAGTAATTGACACTATGCA 58.815 41.667 0.00 0.00 0.00 3.96
1107 1113 5.295292 CCTGGAAGTAATTGACACTATGCAG 59.705 44.000 0.00 0.00 0.00 4.41
1108 1114 5.185454 TGGAAGTAATTGACACTATGCAGG 58.815 41.667 0.00 0.00 0.00 4.85
1109 1115 5.045942 TGGAAGTAATTGACACTATGCAGGA 60.046 40.000 0.00 0.00 0.00 3.86
1110 1116 5.294552 GGAAGTAATTGACACTATGCAGGAC 59.705 44.000 0.00 0.00 0.00 3.85
1111 1117 4.433615 AGTAATTGACACTATGCAGGACG 58.566 43.478 0.00 0.00 0.00 4.79
1112 1118 2.315925 ATTGACACTATGCAGGACGG 57.684 50.000 0.00 0.00 0.00 4.79
1113 1119 1.262417 TTGACACTATGCAGGACGGA 58.738 50.000 0.00 0.00 0.00 4.69
1114 1120 0.817654 TGACACTATGCAGGACGGAG 59.182 55.000 0.00 0.00 0.00 4.63
1115 1121 0.103208 GACACTATGCAGGACGGAGG 59.897 60.000 0.00 0.00 0.00 4.30
1116 1122 0.324368 ACACTATGCAGGACGGAGGA 60.324 55.000 0.00 0.00 0.00 3.71
1117 1123 0.103208 CACTATGCAGGACGGAGGAC 59.897 60.000 0.00 0.00 0.00 3.85
1118 1124 0.324368 ACTATGCAGGACGGAGGACA 60.324 55.000 0.00 0.00 0.00 4.02
1119 1125 0.387202 CTATGCAGGACGGAGGACAG 59.613 60.000 0.00 0.00 0.00 3.51
1120 1126 0.324368 TATGCAGGACGGAGGACAGT 60.324 55.000 0.00 0.00 0.00 3.55
1121 1127 1.608717 ATGCAGGACGGAGGACAGTC 61.609 60.000 0.00 0.00 39.73 3.51
1122 1128 2.878429 CAGGACGGAGGACAGTCG 59.122 66.667 0.00 0.00 40.96 4.18
1123 1129 2.361357 AGGACGGAGGACAGTCGG 60.361 66.667 0.00 0.00 40.96 4.79
1124 1130 4.131088 GGACGGAGGACAGTCGGC 62.131 72.222 0.00 0.00 40.96 5.54
1125 1131 4.477975 GACGGAGGACAGTCGGCG 62.478 72.222 0.00 0.00 32.45 6.46
1129 1135 2.753043 GAGGACAGTCGGCGGGTA 60.753 66.667 7.21 0.00 0.00 3.69
1130 1136 2.043248 AGGACAGTCGGCGGGTAT 60.043 61.111 7.21 0.00 0.00 2.73
1131 1137 2.106332 GGACAGTCGGCGGGTATG 59.894 66.667 7.21 3.47 0.00 2.39
1132 1138 2.106332 GACAGTCGGCGGGTATGG 59.894 66.667 7.21 0.00 0.00 2.74
1133 1139 4.157120 ACAGTCGGCGGGTATGGC 62.157 66.667 7.21 0.00 0.00 4.40
1142 1148 2.519302 GGGTATGGCCGCAGCAAT 60.519 61.111 0.00 0.00 42.56 3.56
1143 1149 2.127232 GGGTATGGCCGCAGCAATT 61.127 57.895 0.00 0.00 42.56 2.32
1144 1150 1.675720 GGGTATGGCCGCAGCAATTT 61.676 55.000 0.00 0.00 42.56 1.82
1145 1151 0.175531 GGTATGGCCGCAGCAATTTT 59.824 50.000 0.00 0.00 42.56 1.82
1146 1152 1.559831 GTATGGCCGCAGCAATTTTC 58.440 50.000 0.00 0.00 42.56 2.29
1147 1153 0.100325 TATGGCCGCAGCAATTTTCG 59.900 50.000 0.00 0.00 42.56 3.46
1148 1154 1.594194 ATGGCCGCAGCAATTTTCGA 61.594 50.000 0.00 0.00 42.56 3.71
1149 1155 1.139520 GGCCGCAGCAATTTTCGAT 59.860 52.632 0.00 0.00 42.56 3.59
1150 1156 1.141591 GGCCGCAGCAATTTTCGATG 61.142 55.000 0.00 0.00 42.56 3.84
1151 1157 0.179166 GCCGCAGCAATTTTCGATGA 60.179 50.000 0.00 0.00 39.53 2.92
1152 1158 1.534595 GCCGCAGCAATTTTCGATGAT 60.535 47.619 0.00 0.00 39.53 2.45
1153 1159 2.801063 CCGCAGCAATTTTCGATGATT 58.199 42.857 0.00 0.00 0.00 2.57
1154 1160 2.532723 CCGCAGCAATTTTCGATGATTG 59.467 45.455 13.86 13.86 36.56 2.67
1155 1161 3.173599 CGCAGCAATTTTCGATGATTGT 58.826 40.909 17.40 6.75 36.03 2.71
1156 1162 3.609373 CGCAGCAATTTTCGATGATTGTT 59.391 39.130 17.40 11.72 36.03 2.83
1157 1163 4.090354 CGCAGCAATTTTCGATGATTGTTT 59.910 37.500 17.40 8.07 36.03 2.83
1158 1164 5.388682 CGCAGCAATTTTCGATGATTGTTTT 60.389 36.000 17.40 6.34 36.03 2.43
1159 1165 6.011277 GCAGCAATTTTCGATGATTGTTTTC 58.989 36.000 17.40 7.02 36.03 2.29
1160 1166 6.346758 GCAGCAATTTTCGATGATTGTTTTCA 60.347 34.615 17.40 0.00 36.03 2.69
1161 1167 7.005380 CAGCAATTTTCGATGATTGTTTTCAC 58.995 34.615 17.40 5.32 36.03 3.18
1162 1168 6.925165 AGCAATTTTCGATGATTGTTTTCACT 59.075 30.769 17.40 6.91 36.03 3.41
1163 1169 8.081633 AGCAATTTTCGATGATTGTTTTCACTA 58.918 29.630 17.40 0.00 36.03 2.74
1164 1170 8.863049 GCAATTTTCGATGATTGTTTTCACTAT 58.137 29.630 17.40 0.00 36.03 2.12
1166 1172 9.912634 AATTTTCGATGATTGTTTTCACTATGT 57.087 25.926 0.00 0.00 0.00 2.29
1167 1173 8.948853 TTTTCGATGATTGTTTTCACTATGTC 57.051 30.769 0.00 0.00 0.00 3.06
1168 1174 7.905604 TTCGATGATTGTTTTCACTATGTCT 57.094 32.000 0.00 0.00 0.00 3.41
1169 1175 7.294676 TCGATGATTGTTTTCACTATGTCTG 57.705 36.000 0.00 0.00 0.00 3.51
1170 1176 6.873605 TCGATGATTGTTTTCACTATGTCTGT 59.126 34.615 0.00 0.00 0.00 3.41
1171 1177 6.957635 CGATGATTGTTTTCACTATGTCTGTG 59.042 38.462 0.00 0.00 36.82 3.66
1172 1178 7.148590 CGATGATTGTTTTCACTATGTCTGTGA 60.149 37.037 0.00 0.00 41.94 3.58
1173 1179 7.984422 TGATTGTTTTCACTATGTCTGTGAT 57.016 32.000 0.00 0.00 42.95 3.06
1174 1180 8.394971 TGATTGTTTTCACTATGTCTGTGATT 57.605 30.769 0.00 0.00 42.95 2.57
1175 1181 8.849168 TGATTGTTTTCACTATGTCTGTGATTT 58.151 29.630 0.00 0.00 42.95 2.17
1176 1182 9.683069 GATTGTTTTCACTATGTCTGTGATTTT 57.317 29.630 0.00 0.00 42.95 1.82
1177 1183 8.854979 TTGTTTTCACTATGTCTGTGATTTTG 57.145 30.769 0.00 0.00 42.95 2.44
1178 1184 7.995289 TGTTTTCACTATGTCTGTGATTTTGT 58.005 30.769 0.00 0.00 42.95 2.83
1179 1185 8.465999 TGTTTTCACTATGTCTGTGATTTTGTT 58.534 29.630 0.00 0.00 42.95 2.83
1180 1186 9.944663 GTTTTCACTATGTCTGTGATTTTGTTA 57.055 29.630 0.00 0.00 42.95 2.41
1181 1187 9.944663 TTTTCACTATGTCTGTGATTTTGTTAC 57.055 29.630 0.00 0.00 42.95 2.50
1182 1188 8.669946 TTCACTATGTCTGTGATTTTGTTACA 57.330 30.769 0.00 0.00 42.95 2.41
1183 1189 8.669946 TCACTATGTCTGTGATTTTGTTACAA 57.330 30.769 0.00 0.00 39.23 2.41
1184 1190 8.556194 TCACTATGTCTGTGATTTTGTTACAAC 58.444 33.333 0.00 0.00 39.23 3.32
1185 1191 8.559536 CACTATGTCTGTGATTTTGTTACAACT 58.440 33.333 0.00 0.00 37.60 3.16
1186 1192 9.772973 ACTATGTCTGTGATTTTGTTACAACTA 57.227 29.630 0.00 0.00 0.00 2.24
1188 1194 8.902540 ATGTCTGTGATTTTGTTACAACTAGA 57.097 30.769 0.00 0.00 0.00 2.43
1189 1195 8.902540 TGTCTGTGATTTTGTTACAACTAGAT 57.097 30.769 0.00 0.00 0.00 1.98
1190 1196 9.337396 TGTCTGTGATTTTGTTACAACTAGATT 57.663 29.630 0.00 0.00 0.00 2.40
1191 1197 9.813080 GTCTGTGATTTTGTTACAACTAGATTC 57.187 33.333 0.00 0.00 0.00 2.52
1192 1198 8.708742 TCTGTGATTTTGTTACAACTAGATTCG 58.291 33.333 0.00 0.00 0.00 3.34
1193 1199 8.596271 TGTGATTTTGTTACAACTAGATTCGA 57.404 30.769 0.00 0.00 0.00 3.71
1194 1200 9.047371 TGTGATTTTGTTACAACTAGATTCGAA 57.953 29.630 0.00 0.00 0.00 3.71
1195 1201 9.314501 GTGATTTTGTTACAACTAGATTCGAAC 57.685 33.333 0.00 0.00 0.00 3.95
1196 1202 9.047371 TGATTTTGTTACAACTAGATTCGAACA 57.953 29.630 0.00 0.00 0.00 3.18
1199 1205 9.658475 TTTTGTTACAACTAGATTCGAACATTG 57.342 29.630 0.00 3.71 0.00 2.82
1200 1206 7.956420 TGTTACAACTAGATTCGAACATTGT 57.044 32.000 0.00 9.42 33.62 2.71
1201 1207 9.478768 TTGTTACAACTAGATTCGAACATTGTA 57.521 29.630 0.00 8.47 31.63 2.41
1202 1208 9.478768 TGTTACAACTAGATTCGAACATTGTAA 57.521 29.630 19.62 19.62 38.21 2.41
1212 1218 8.687242 AGATTCGAACATTGTAATAGAGAGACA 58.313 33.333 0.00 0.00 0.00 3.41
1213 1219 9.469807 GATTCGAACATTGTAATAGAGAGACAT 57.530 33.333 0.00 0.00 0.00 3.06
1224 1230 9.628500 TGTAATAGAGAGACATAAAGTAGCTCA 57.372 33.333 0.00 0.00 34.60 4.26
1276 1283 7.621832 TGCGTTTCATTGTATTGAAAAGAAG 57.378 32.000 14.20 3.98 44.71 2.85
1277 1284 6.640499 TGCGTTTCATTGTATTGAAAAGAAGG 59.360 34.615 14.20 0.00 44.71 3.46
1509 1516 4.704833 GGGACGAGCAAGGCAGCA 62.705 66.667 4.78 0.00 36.85 4.41
1593 1600 1.077501 AGTGGCATCGTCATTGGGG 60.078 57.895 0.00 0.00 0.00 4.96
1650 1657 1.973281 CCACACTTGGCGGCTGAAT 60.973 57.895 11.43 0.00 35.56 2.57
1652 1659 1.073025 ACACTTGGCGGCTGAATGA 59.927 52.632 11.43 0.00 0.00 2.57
1677 1684 5.682659 CACTCCAGGAGAAGATGATGAATT 58.317 41.667 24.45 0.00 33.32 2.17
1923 1930 0.674895 ACTTCCAGCGAATGCAGTCC 60.675 55.000 8.83 1.48 46.23 3.85
1924 1931 0.674581 CTTCCAGCGAATGCAGTCCA 60.675 55.000 8.83 0.00 46.23 4.02
2064 2071 1.284982 CGACAGTTCTGGACTTGCGG 61.285 60.000 4.82 0.00 36.10 5.69
2103 2110 1.871080 CATAAAGGAGAGGCGCGATT 58.129 50.000 12.10 0.00 0.00 3.34
2139 2147 1.759445 CGTTGATCCATCTGTCCTCCT 59.241 52.381 0.00 0.00 0.00 3.69
2237 2245 1.600636 CAAGTCAAGGCCGCTCCAA 60.601 57.895 0.00 0.00 37.29 3.53
2694 2702 4.758251 CATGGGCAGCGTCCACGA 62.758 66.667 2.58 0.00 41.42 4.35
3059 3072 1.144936 CAGGAGAAGGGCGATCCAC 59.855 63.158 0.00 0.00 38.24 4.02
3185 3198 1.895238 GGCACCAAGCTGATGCAAT 59.105 52.632 16.37 0.00 39.12 3.56
3450 3463 2.740826 GCAGCGCGTAAACCTGGA 60.741 61.111 8.43 0.00 0.00 3.86
3473 3486 3.338126 GACGCATCGGAGGTCGTGT 62.338 63.158 14.57 2.03 40.32 4.49
3616 3633 1.001641 CCTCCAGGTTTGAGGGCTG 60.002 63.158 0.00 0.00 44.73 4.85
4337 4373 3.187227 GCTCATTTGACCATGTATAGCGG 59.813 47.826 0.00 0.00 0.00 5.52
4367 4403 3.010420 GAGGTAAATTTCCTTGAGCGCT 58.990 45.455 11.27 11.27 35.20 5.92
4401 4437 4.090588 GTCGGAACCGCCCCATGA 62.091 66.667 8.48 0.00 39.59 3.07
4402 4438 3.781307 TCGGAACCGCCCCATGAG 61.781 66.667 8.48 0.00 39.59 2.90
4404 4440 4.115199 GGAACCGCCCCATGAGCT 62.115 66.667 0.00 0.00 0.00 4.09
4405 4441 2.514824 GAACCGCCCCATGAGCTC 60.515 66.667 6.82 6.82 0.00 4.09
4406 4442 4.473520 AACCGCCCCATGAGCTCG 62.474 66.667 9.64 0.00 0.00 5.03
4409 4445 3.916544 CGCCCCATGAGCTCGCTA 61.917 66.667 9.64 0.00 0.00 4.26
4410 4446 2.505982 GCCCCATGAGCTCGCTAA 59.494 61.111 9.64 0.00 0.00 3.09
4411 4447 1.153168 GCCCCATGAGCTCGCTAAA 60.153 57.895 9.64 0.00 0.00 1.85
4412 4448 0.536006 GCCCCATGAGCTCGCTAAAT 60.536 55.000 9.64 0.00 0.00 1.40
4477 4513 0.909610 ATTGGTTCGAGGAGCCTCCA 60.910 55.000 14.46 0.96 39.61 3.86
4482 4518 1.066143 GTTCGAGGAGCCTCCAAATGA 60.066 52.381 14.46 1.79 39.61 2.57
4496 4532 7.124599 AGCCTCCAAATGAAATTGTAATGATCA 59.875 33.333 0.00 0.00 36.10 2.92
4508 4544 8.845942 AATTGTAATGATCATCACAAACGATG 57.154 30.769 24.76 0.00 43.50 3.84
4511 4547 7.905126 TGTAATGATCATCACAAACGATGTAC 58.095 34.615 9.35 4.34 41.46 2.90
4519 4555 8.716646 TCATCACAAACGATGTACTGATTATT 57.283 30.769 0.00 0.00 41.46 1.40
4585 4622 3.459828 TGACATTCCTTGAGGGGTATCA 58.540 45.455 0.00 0.00 35.41 2.15
4732 4769 7.506474 GGCATGTTTAAATTCGGTTTGTAAAG 58.494 34.615 0.00 0.00 0.00 1.85
4867 4926 4.419282 TCCGTTATATTTAGGGGATCGGT 58.581 43.478 0.00 0.00 37.26 4.69
4936 5094 1.843851 AGGGGATCGGTTAGAAATGCA 59.156 47.619 0.00 0.00 0.00 3.96
4958 5116 7.564793 TGCACTTAGAGGCTAAATGATAAAGA 58.435 34.615 0.39 0.00 0.00 2.52
5091 5528 7.312154 TCATTCCAAAATAATTGACGTTCCTG 58.688 34.615 0.00 0.00 0.00 3.86
5204 5644 1.235696 GGAGGAGGAGGAGGAGCAT 59.764 63.158 0.00 0.00 0.00 3.79
5316 5770 4.101119 GCTGCTATTTTAGTACTCCCTCCA 59.899 45.833 0.00 0.00 0.00 3.86
5478 10012 4.262938 GGAGTACAACTTTAAGAGGCCTGT 60.263 45.833 12.00 1.36 0.00 4.00
5480 10014 2.767505 ACAACTTTAAGAGGCCTGTCG 58.232 47.619 12.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.314635 GCATTTCATCAGAGGGCTTGTAG 59.685 47.826 0.00 0.00 0.00 2.74
44 45 2.097825 GCATTTCATCAGAGGGCTTGT 58.902 47.619 0.00 0.00 0.00 3.16
145 146 1.481871 ACCTTCGAATAGCCTCCGAA 58.518 50.000 0.00 0.00 39.58 4.30
147 148 1.136305 TGAACCTTCGAATAGCCTCCG 59.864 52.381 0.00 0.00 0.00 4.63
155 156 2.554032 CTGCTTTGGTGAACCTTCGAAT 59.446 45.455 0.00 0.00 36.82 3.34
209 210 1.002087 GGTGTCTTCCTCGATTGGTGT 59.998 52.381 0.00 0.00 0.00 4.16
321 323 6.059484 CCTTTGTACTAAACCTTCCAACTCA 58.941 40.000 0.00 0.00 0.00 3.41
333 335 5.133941 TGTTGACATGGCCTTTGTACTAAA 58.866 37.500 3.32 0.00 0.00 1.85
335 337 4.359434 TGTTGACATGGCCTTTGTACTA 57.641 40.909 3.32 0.00 0.00 1.82
404 406 4.697352 AGGAAGACCAAAGAATGAATGTCG 59.303 41.667 0.00 0.00 38.94 4.35
424 426 1.649321 AGTCATTGTGAGAGCCAGGA 58.351 50.000 0.00 0.00 0.00 3.86
450 452 3.724508 ACAGAGGTGATCTTGATAGCG 57.275 47.619 0.00 0.00 35.47 4.26
624 630 1.551883 GCTTCTTGACATTGGGCCAAT 59.448 47.619 25.94 25.94 34.04 3.16
627 633 0.529378 CAGCTTCTTGACATTGGGCC 59.471 55.000 0.00 0.00 0.00 5.80
742 748 4.642445 TGATGCAACATGTCATGATTCC 57.358 40.909 19.77 5.42 0.00 3.01
876 882 5.446473 CGTGATCAAAAGAAGCATCAGGTAC 60.446 44.000 0.00 0.00 0.00 3.34
877 883 4.631377 CGTGATCAAAAGAAGCATCAGGTA 59.369 41.667 0.00 0.00 0.00 3.08
878 884 3.438087 CGTGATCAAAAGAAGCATCAGGT 59.562 43.478 0.00 0.00 0.00 4.00
879 885 3.686241 TCGTGATCAAAAGAAGCATCAGG 59.314 43.478 0.00 0.00 34.09 3.86
880 886 4.152938 TGTCGTGATCAAAAGAAGCATCAG 59.847 41.667 0.00 0.00 0.00 2.90
881 887 4.064388 TGTCGTGATCAAAAGAAGCATCA 58.936 39.130 0.00 0.00 0.00 3.07
882 888 4.668576 TGTCGTGATCAAAAGAAGCATC 57.331 40.909 0.00 0.00 0.00 3.91
883 889 4.673580 GCATGTCGTGATCAAAAGAAGCAT 60.674 41.667 0.00 0.00 0.00 3.79
884 890 3.365264 GCATGTCGTGATCAAAAGAAGCA 60.365 43.478 0.00 0.00 0.00 3.91
885 891 3.120060 AGCATGTCGTGATCAAAAGAAGC 60.120 43.478 0.00 0.00 0.00 3.86
886 892 4.152938 TCAGCATGTCGTGATCAAAAGAAG 59.847 41.667 0.00 0.00 37.40 2.85
887 893 4.064388 TCAGCATGTCGTGATCAAAAGAA 58.936 39.130 0.00 0.00 37.40 2.52
888 894 3.663025 TCAGCATGTCGTGATCAAAAGA 58.337 40.909 0.00 0.00 37.40 2.52
889 895 4.400845 CTTCAGCATGTCGTGATCAAAAG 58.599 43.478 0.00 0.00 37.40 2.27
890 896 3.189080 CCTTCAGCATGTCGTGATCAAAA 59.811 43.478 0.00 0.00 37.40 2.44
891 897 2.743664 CCTTCAGCATGTCGTGATCAAA 59.256 45.455 0.00 0.00 37.40 2.69
892 898 2.349590 CCTTCAGCATGTCGTGATCAA 58.650 47.619 0.00 0.00 37.40 2.57
893 899 1.405933 CCCTTCAGCATGTCGTGATCA 60.406 52.381 0.00 0.00 37.40 2.92
894 900 1.293924 CCCTTCAGCATGTCGTGATC 58.706 55.000 0.00 0.00 37.40 2.92
895 901 0.615331 ACCCTTCAGCATGTCGTGAT 59.385 50.000 0.00 0.00 37.40 3.06
896 902 0.320683 CACCCTTCAGCATGTCGTGA 60.321 55.000 0.00 0.00 37.40 4.35
897 903 1.915614 GCACCCTTCAGCATGTCGTG 61.916 60.000 0.00 0.00 37.40 4.35
898 904 1.672356 GCACCCTTCAGCATGTCGT 60.672 57.895 0.00 0.00 37.40 4.34
899 905 1.236616 TTGCACCCTTCAGCATGTCG 61.237 55.000 0.00 0.00 40.94 4.35
900 906 1.180029 ATTGCACCCTTCAGCATGTC 58.820 50.000 0.00 0.00 40.94 3.06
901 907 2.372264 CTATTGCACCCTTCAGCATGT 58.628 47.619 0.00 0.00 40.94 3.21
902 908 1.679680 CCTATTGCACCCTTCAGCATG 59.320 52.381 0.00 0.00 40.94 4.06
903 909 1.410648 CCCTATTGCACCCTTCAGCAT 60.411 52.381 0.00 0.00 40.94 3.79
904 910 0.034186 CCCTATTGCACCCTTCAGCA 60.034 55.000 0.00 0.00 39.32 4.41
905 911 0.753111 CCCCTATTGCACCCTTCAGC 60.753 60.000 0.00 0.00 0.00 4.26
906 912 0.753111 GCCCCTATTGCACCCTTCAG 60.753 60.000 0.00 0.00 0.00 3.02
907 913 1.306296 GCCCCTATTGCACCCTTCA 59.694 57.895 0.00 0.00 0.00 3.02
908 914 1.823899 CGCCCCTATTGCACCCTTC 60.824 63.158 0.00 0.00 0.00 3.46
909 915 2.275418 CGCCCCTATTGCACCCTT 59.725 61.111 0.00 0.00 0.00 3.95
910 916 3.809013 CCGCCCCTATTGCACCCT 61.809 66.667 0.00 0.00 0.00 4.34
911 917 4.123545 ACCGCCCCTATTGCACCC 62.124 66.667 0.00 0.00 0.00 4.61
912 918 2.516225 GACCGCCCCTATTGCACC 60.516 66.667 0.00 0.00 0.00 5.01
913 919 2.516225 GGACCGCCCCTATTGCAC 60.516 66.667 0.00 0.00 0.00 4.57
914 920 2.690881 AGGACCGCCCCTATTGCA 60.691 61.111 0.00 0.00 34.07 4.08
915 921 2.203209 CAGGACCGCCCCTATTGC 60.203 66.667 0.00 0.00 34.07 3.56
916 922 1.048724 TCTCAGGACCGCCCCTATTG 61.049 60.000 0.00 0.00 34.07 1.90
917 923 0.760945 CTCTCAGGACCGCCCCTATT 60.761 60.000 0.00 0.00 34.07 1.73
918 924 1.152440 CTCTCAGGACCGCCCCTAT 60.152 63.158 0.00 0.00 34.07 2.57
919 925 2.279073 CTCTCAGGACCGCCCCTA 59.721 66.667 0.00 0.00 34.07 3.53
920 926 3.673597 TCTCTCAGGACCGCCCCT 61.674 66.667 0.00 0.00 36.90 4.79
921 927 3.462678 GTCTCTCAGGACCGCCCC 61.463 72.222 0.00 0.00 34.66 5.80
922 928 2.283529 TTGTCTCTCAGGACCGCCC 61.284 63.158 0.00 0.00 35.54 6.13
923 929 1.079750 GTTGTCTCTCAGGACCGCC 60.080 63.158 0.00 0.00 35.54 6.13
924 930 0.033504 TTGTTGTCTCTCAGGACCGC 59.966 55.000 0.00 0.00 35.54 5.68
925 931 2.408050 CTTTGTTGTCTCTCAGGACCG 58.592 52.381 0.00 0.00 35.54 4.79
926 932 2.104963 ACCTTTGTTGTCTCTCAGGACC 59.895 50.000 0.00 0.00 35.54 4.46
927 933 3.477210 ACCTTTGTTGTCTCTCAGGAC 57.523 47.619 0.00 0.00 36.81 3.85
928 934 3.578716 CCTACCTTTGTTGTCTCTCAGGA 59.421 47.826 0.00 0.00 0.00 3.86
929 935 3.325135 ACCTACCTTTGTTGTCTCTCAGG 59.675 47.826 0.00 0.00 0.00 3.86
930 936 4.608948 ACCTACCTTTGTTGTCTCTCAG 57.391 45.455 0.00 0.00 0.00 3.35
931 937 5.367945 AAACCTACCTTTGTTGTCTCTCA 57.632 39.130 0.00 0.00 0.00 3.27
932 938 7.148623 CGATAAAACCTACCTTTGTTGTCTCTC 60.149 40.741 0.00 0.00 0.00 3.20
933 939 6.649557 CGATAAAACCTACCTTTGTTGTCTCT 59.350 38.462 0.00 0.00 0.00 3.10
934 940 6.620089 GCGATAAAACCTACCTTTGTTGTCTC 60.620 42.308 0.00 0.00 0.00 3.36
935 941 5.180680 GCGATAAAACCTACCTTTGTTGTCT 59.819 40.000 0.00 0.00 0.00 3.41
936 942 5.180680 AGCGATAAAACCTACCTTTGTTGTC 59.819 40.000 0.00 0.00 0.00 3.18
937 943 5.067954 AGCGATAAAACCTACCTTTGTTGT 58.932 37.500 0.00 0.00 0.00 3.32
938 944 5.622770 AGCGATAAAACCTACCTTTGTTG 57.377 39.130 0.00 0.00 0.00 3.33
939 945 6.704310 TCTAGCGATAAAACCTACCTTTGTT 58.296 36.000 0.00 0.00 0.00 2.83
940 946 6.290294 TCTAGCGATAAAACCTACCTTTGT 57.710 37.500 0.00 0.00 0.00 2.83
941 947 5.753921 CCTCTAGCGATAAAACCTACCTTTG 59.246 44.000 0.00 0.00 0.00 2.77
942 948 5.659971 TCCTCTAGCGATAAAACCTACCTTT 59.340 40.000 0.00 0.00 0.00 3.11
943 949 5.206587 TCCTCTAGCGATAAAACCTACCTT 58.793 41.667 0.00 0.00 0.00 3.50
944 950 4.801164 TCCTCTAGCGATAAAACCTACCT 58.199 43.478 0.00 0.00 0.00 3.08
945 951 5.526506 TTCCTCTAGCGATAAAACCTACC 57.473 43.478 0.00 0.00 0.00 3.18
946 952 6.424207 CCATTTCCTCTAGCGATAAAACCTAC 59.576 42.308 0.00 0.00 0.00 3.18
947 953 6.463897 CCCATTTCCTCTAGCGATAAAACCTA 60.464 42.308 0.00 0.00 0.00 3.08
948 954 5.368989 CCATTTCCTCTAGCGATAAAACCT 58.631 41.667 0.00 0.00 0.00 3.50
949 955 4.515567 CCCATTTCCTCTAGCGATAAAACC 59.484 45.833 0.00 0.00 0.00 3.27
950 956 5.365619 TCCCATTTCCTCTAGCGATAAAAC 58.634 41.667 0.00 0.00 0.00 2.43
951 957 5.623956 TCCCATTTCCTCTAGCGATAAAA 57.376 39.130 0.00 0.00 0.00 1.52
952 958 5.365605 TCTTCCCATTTCCTCTAGCGATAAA 59.634 40.000 0.00 0.00 0.00 1.40
953 959 4.899457 TCTTCCCATTTCCTCTAGCGATAA 59.101 41.667 0.00 0.00 0.00 1.75
954 960 4.480115 TCTTCCCATTTCCTCTAGCGATA 58.520 43.478 0.00 0.00 0.00 2.92
955 961 3.309296 TCTTCCCATTTCCTCTAGCGAT 58.691 45.455 0.00 0.00 0.00 4.58
956 962 2.747177 TCTTCCCATTTCCTCTAGCGA 58.253 47.619 0.00 0.00 0.00 4.93
957 963 3.760580 ATCTTCCCATTTCCTCTAGCG 57.239 47.619 0.00 0.00 0.00 4.26
958 964 4.819088 GTCAATCTTCCCATTTCCTCTAGC 59.181 45.833 0.00 0.00 0.00 3.42
959 965 6.245890 AGTCAATCTTCCCATTTCCTCTAG 57.754 41.667 0.00 0.00 0.00 2.43
960 966 7.937700 ATAGTCAATCTTCCCATTTCCTCTA 57.062 36.000 0.00 0.00 0.00 2.43
961 967 6.838401 ATAGTCAATCTTCCCATTTCCTCT 57.162 37.500 0.00 0.00 0.00 3.69
962 968 6.830838 ACAATAGTCAATCTTCCCATTTCCTC 59.169 38.462 0.00 0.00 0.00 3.71
963 969 6.604795 CACAATAGTCAATCTTCCCATTTCCT 59.395 38.462 0.00 0.00 0.00 3.36
964 970 6.681368 GCACAATAGTCAATCTTCCCATTTCC 60.681 42.308 0.00 0.00 0.00 3.13
965 971 6.268566 GCACAATAGTCAATCTTCCCATTTC 58.731 40.000 0.00 0.00 0.00 2.17
966 972 5.163622 CGCACAATAGTCAATCTTCCCATTT 60.164 40.000 0.00 0.00 0.00 2.32
967 973 4.336433 CGCACAATAGTCAATCTTCCCATT 59.664 41.667 0.00 0.00 0.00 3.16
968 974 3.879295 CGCACAATAGTCAATCTTCCCAT 59.121 43.478 0.00 0.00 0.00 4.00
969 975 3.270027 CGCACAATAGTCAATCTTCCCA 58.730 45.455 0.00 0.00 0.00 4.37
970 976 2.614057 CCGCACAATAGTCAATCTTCCC 59.386 50.000 0.00 0.00 0.00 3.97
971 977 3.531538 TCCGCACAATAGTCAATCTTCC 58.468 45.455 0.00 0.00 0.00 3.46
972 978 4.572389 ACATCCGCACAATAGTCAATCTTC 59.428 41.667 0.00 0.00 0.00 2.87
973 979 4.517285 ACATCCGCACAATAGTCAATCTT 58.483 39.130 0.00 0.00 0.00 2.40
974 980 4.142609 ACATCCGCACAATAGTCAATCT 57.857 40.909 0.00 0.00 0.00 2.40
975 981 4.572389 AGAACATCCGCACAATAGTCAATC 59.428 41.667 0.00 0.00 0.00 2.67
976 982 4.333649 CAGAACATCCGCACAATAGTCAAT 59.666 41.667 0.00 0.00 0.00 2.57
977 983 3.684305 CAGAACATCCGCACAATAGTCAA 59.316 43.478 0.00 0.00 0.00 3.18
978 984 3.056179 TCAGAACATCCGCACAATAGTCA 60.056 43.478 0.00 0.00 0.00 3.41
979 985 3.521560 TCAGAACATCCGCACAATAGTC 58.478 45.455 0.00 0.00 0.00 2.59
980 986 3.610040 TCAGAACATCCGCACAATAGT 57.390 42.857 0.00 0.00 0.00 2.12
981 987 3.249320 CCATCAGAACATCCGCACAATAG 59.751 47.826 0.00 0.00 0.00 1.73
982 988 3.205338 CCATCAGAACATCCGCACAATA 58.795 45.455 0.00 0.00 0.00 1.90
983 989 2.019249 CCATCAGAACATCCGCACAAT 58.981 47.619 0.00 0.00 0.00 2.71
984 990 1.452110 CCATCAGAACATCCGCACAA 58.548 50.000 0.00 0.00 0.00 3.33
985 991 1.026182 GCCATCAGAACATCCGCACA 61.026 55.000 0.00 0.00 0.00 4.57
986 992 1.026182 TGCCATCAGAACATCCGCAC 61.026 55.000 0.00 0.00 0.00 5.34
987 993 0.745486 CTGCCATCAGAACATCCGCA 60.745 55.000 0.00 0.00 42.95 5.69
988 994 0.462581 TCTGCCATCAGAACATCCGC 60.463 55.000 0.00 0.00 45.69 5.54
989 995 3.766644 TCTGCCATCAGAACATCCG 57.233 52.632 0.00 0.00 45.69 4.18
1009 1015 2.159184 GGCCAAATTTGAGAGCTAAGGC 60.159 50.000 19.86 10.44 38.84 4.35
1010 1016 3.359950 AGGCCAAATTTGAGAGCTAAGG 58.640 45.455 19.86 0.39 0.00 2.69
1011 1017 5.415701 TGTTAGGCCAAATTTGAGAGCTAAG 59.584 40.000 19.86 1.30 0.00 2.18
1012 1018 5.183140 GTGTTAGGCCAAATTTGAGAGCTAA 59.817 40.000 19.86 11.05 0.00 3.09
1013 1019 4.700213 GTGTTAGGCCAAATTTGAGAGCTA 59.300 41.667 19.86 6.42 0.00 3.32
1014 1020 3.507622 GTGTTAGGCCAAATTTGAGAGCT 59.492 43.478 19.86 7.25 0.00 4.09
1015 1021 3.507622 AGTGTTAGGCCAAATTTGAGAGC 59.492 43.478 19.86 13.71 0.00 4.09
1016 1022 5.163713 GCTAGTGTTAGGCCAAATTTGAGAG 60.164 44.000 19.86 4.22 0.00 3.20
1017 1023 4.700213 GCTAGTGTTAGGCCAAATTTGAGA 59.300 41.667 19.86 0.00 0.00 3.27
1018 1024 4.458989 TGCTAGTGTTAGGCCAAATTTGAG 59.541 41.667 19.86 10.54 0.00 3.02
1019 1025 4.217550 GTGCTAGTGTTAGGCCAAATTTGA 59.782 41.667 19.86 0.00 0.00 2.69
1020 1026 4.022416 TGTGCTAGTGTTAGGCCAAATTTG 60.022 41.667 11.40 11.40 0.00 2.32
1021 1027 4.148838 TGTGCTAGTGTTAGGCCAAATTT 58.851 39.130 5.01 0.00 0.00 1.82
1022 1028 3.761897 TGTGCTAGTGTTAGGCCAAATT 58.238 40.909 5.01 0.00 0.00 1.82
1023 1029 3.433306 TGTGCTAGTGTTAGGCCAAAT 57.567 42.857 5.01 0.00 0.00 2.32
1024 1030 2.940994 TGTGCTAGTGTTAGGCCAAA 57.059 45.000 5.01 0.00 0.00 3.28
1025 1031 2.940994 TTGTGCTAGTGTTAGGCCAA 57.059 45.000 5.01 0.00 0.00 4.52
1026 1032 2.552155 CCTTTGTGCTAGTGTTAGGCCA 60.552 50.000 5.01 0.00 0.00 5.36
1027 1033 2.084546 CCTTTGTGCTAGTGTTAGGCC 58.915 52.381 0.00 0.00 0.00 5.19
1028 1034 2.084546 CCCTTTGTGCTAGTGTTAGGC 58.915 52.381 0.00 0.00 0.00 3.93
1029 1035 2.084546 GCCCTTTGTGCTAGTGTTAGG 58.915 52.381 0.00 0.00 0.00 2.69
1030 1036 1.732259 CGCCCTTTGTGCTAGTGTTAG 59.268 52.381 0.00 0.00 0.00 2.34
1031 1037 1.609580 CCGCCCTTTGTGCTAGTGTTA 60.610 52.381 0.00 0.00 0.00 2.41
1032 1038 0.889186 CCGCCCTTTGTGCTAGTGTT 60.889 55.000 0.00 0.00 0.00 3.32
1033 1039 1.302511 CCGCCCTTTGTGCTAGTGT 60.303 57.895 0.00 0.00 0.00 3.55
1034 1040 2.040544 CCCGCCCTTTGTGCTAGTG 61.041 63.158 0.00 0.00 0.00 2.74
1035 1041 2.351276 CCCGCCCTTTGTGCTAGT 59.649 61.111 0.00 0.00 0.00 2.57
1036 1042 2.438434 CCCCGCCCTTTGTGCTAG 60.438 66.667 0.00 0.00 0.00 3.42
1037 1043 3.253838 ACCCCGCCCTTTGTGCTA 61.254 61.111 0.00 0.00 0.00 3.49
1038 1044 4.974721 CACCCCGCCCTTTGTGCT 62.975 66.667 0.00 0.00 0.00 4.40
1039 1045 3.853698 TACACCCCGCCCTTTGTGC 62.854 63.158 0.00 0.00 31.98 4.57
1040 1046 0.610785 ATTACACCCCGCCCTTTGTG 60.611 55.000 0.00 0.00 34.92 3.33
1041 1047 0.323087 GATTACACCCCGCCCTTTGT 60.323 55.000 0.00 0.00 0.00 2.83
1042 1048 0.322997 TGATTACACCCCGCCCTTTG 60.323 55.000 0.00 0.00 0.00 2.77
1043 1049 0.323087 GTGATTACACCCCGCCCTTT 60.323 55.000 0.00 0.00 40.74 3.11
1044 1050 1.301954 GTGATTACACCCCGCCCTT 59.698 57.895 0.00 0.00 40.74 3.95
1045 1051 2.995547 GTGATTACACCCCGCCCT 59.004 61.111 0.00 0.00 40.74 5.19
1058 1064 9.125026 GGTTGTCTGAATTAATGATAAGGTGAT 57.875 33.333 0.00 0.00 0.00 3.06
1059 1065 8.328758 AGGTTGTCTGAATTAATGATAAGGTGA 58.671 33.333 0.00 0.00 0.00 4.02
1060 1066 8.400947 CAGGTTGTCTGAATTAATGATAAGGTG 58.599 37.037 0.00 0.00 46.18 4.00
1061 1067 7.557719 CCAGGTTGTCTGAATTAATGATAAGGT 59.442 37.037 0.00 0.00 46.18 3.50
1062 1068 7.775093 TCCAGGTTGTCTGAATTAATGATAAGG 59.225 37.037 0.00 0.00 46.18 2.69
1063 1069 8.737168 TCCAGGTTGTCTGAATTAATGATAAG 57.263 34.615 0.00 0.00 46.18 1.73
1064 1070 9.177608 CTTCCAGGTTGTCTGAATTAATGATAA 57.822 33.333 0.00 0.00 46.18 1.75
1065 1071 8.328758 ACTTCCAGGTTGTCTGAATTAATGATA 58.671 33.333 0.00 0.00 46.18 2.15
1066 1072 7.177878 ACTTCCAGGTTGTCTGAATTAATGAT 58.822 34.615 0.00 0.00 46.18 2.45
1067 1073 6.542821 ACTTCCAGGTTGTCTGAATTAATGA 58.457 36.000 0.00 0.00 46.18 2.57
1068 1074 6.824305 ACTTCCAGGTTGTCTGAATTAATG 57.176 37.500 0.00 0.00 46.18 1.90
1069 1075 9.533831 AATTACTTCCAGGTTGTCTGAATTAAT 57.466 29.630 0.00 0.00 46.18 1.40
1070 1076 8.792633 CAATTACTTCCAGGTTGTCTGAATTAA 58.207 33.333 0.00 0.00 46.18 1.40
1071 1077 8.160765 TCAATTACTTCCAGGTTGTCTGAATTA 58.839 33.333 0.00 0.00 46.18 1.40
1072 1078 7.004086 TCAATTACTTCCAGGTTGTCTGAATT 58.996 34.615 0.00 0.00 46.18 2.17
1073 1079 6.431234 GTCAATTACTTCCAGGTTGTCTGAAT 59.569 38.462 0.00 0.00 46.18 2.57
1074 1080 5.763204 GTCAATTACTTCCAGGTTGTCTGAA 59.237 40.000 0.00 0.00 46.18 3.02
1075 1081 5.163248 TGTCAATTACTTCCAGGTTGTCTGA 60.163 40.000 0.00 0.00 46.18 3.27
1076 1082 5.049405 GTGTCAATTACTTCCAGGTTGTCTG 60.049 44.000 0.00 0.00 43.00 3.51
1077 1083 5.063880 GTGTCAATTACTTCCAGGTTGTCT 58.936 41.667 0.00 0.00 0.00 3.41
1078 1084 5.063880 AGTGTCAATTACTTCCAGGTTGTC 58.936 41.667 0.00 0.00 0.00 3.18
1079 1085 5.048846 AGTGTCAATTACTTCCAGGTTGT 57.951 39.130 0.00 0.00 0.00 3.32
1080 1086 6.403636 GCATAGTGTCAATTACTTCCAGGTTG 60.404 42.308 0.00 0.00 0.00 3.77
1081 1087 5.648092 GCATAGTGTCAATTACTTCCAGGTT 59.352 40.000 0.00 0.00 0.00 3.50
1082 1088 5.186198 GCATAGTGTCAATTACTTCCAGGT 58.814 41.667 0.00 0.00 0.00 4.00
1083 1089 5.185454 TGCATAGTGTCAATTACTTCCAGG 58.815 41.667 0.00 0.00 0.00 4.45
1084 1090 5.295292 CCTGCATAGTGTCAATTACTTCCAG 59.705 44.000 0.00 0.00 0.00 3.86
1085 1091 5.045942 TCCTGCATAGTGTCAATTACTTCCA 60.046 40.000 0.00 0.00 0.00 3.53
1086 1092 5.294552 GTCCTGCATAGTGTCAATTACTTCC 59.705 44.000 0.00 0.00 0.00 3.46
1087 1093 5.005779 CGTCCTGCATAGTGTCAATTACTTC 59.994 44.000 0.00 0.00 0.00 3.01
1088 1094 4.870426 CGTCCTGCATAGTGTCAATTACTT 59.130 41.667 0.00 0.00 0.00 2.24
1089 1095 4.433615 CGTCCTGCATAGTGTCAATTACT 58.566 43.478 0.00 0.00 0.00 2.24
1090 1096 3.555956 CCGTCCTGCATAGTGTCAATTAC 59.444 47.826 0.00 0.00 0.00 1.89
1091 1097 3.449377 TCCGTCCTGCATAGTGTCAATTA 59.551 43.478 0.00 0.00 0.00 1.40
1092 1098 2.236146 TCCGTCCTGCATAGTGTCAATT 59.764 45.455 0.00 0.00 0.00 2.32
1093 1099 1.831106 TCCGTCCTGCATAGTGTCAAT 59.169 47.619 0.00 0.00 0.00 2.57
1094 1100 1.204704 CTCCGTCCTGCATAGTGTCAA 59.795 52.381 0.00 0.00 0.00 3.18
1095 1101 0.817654 CTCCGTCCTGCATAGTGTCA 59.182 55.000 0.00 0.00 0.00 3.58
1096 1102 0.103208 CCTCCGTCCTGCATAGTGTC 59.897 60.000 0.00 0.00 0.00 3.67
1097 1103 0.324368 TCCTCCGTCCTGCATAGTGT 60.324 55.000 0.00 0.00 0.00 3.55
1098 1104 0.103208 GTCCTCCGTCCTGCATAGTG 59.897 60.000 0.00 0.00 0.00 2.74
1099 1105 0.324368 TGTCCTCCGTCCTGCATAGT 60.324 55.000 0.00 0.00 0.00 2.12
1100 1106 0.387202 CTGTCCTCCGTCCTGCATAG 59.613 60.000 0.00 0.00 0.00 2.23
1101 1107 0.324368 ACTGTCCTCCGTCCTGCATA 60.324 55.000 0.00 0.00 0.00 3.14
1102 1108 1.608717 GACTGTCCTCCGTCCTGCAT 61.609 60.000 0.00 0.00 0.00 3.96
1103 1109 2.203640 ACTGTCCTCCGTCCTGCA 60.204 61.111 0.00 0.00 0.00 4.41
1104 1110 2.574399 GACTGTCCTCCGTCCTGC 59.426 66.667 0.00 0.00 0.00 4.85
1105 1111 2.701780 CCGACTGTCCTCCGTCCTG 61.702 68.421 1.55 0.00 0.00 3.86
1106 1112 2.361357 CCGACTGTCCTCCGTCCT 60.361 66.667 1.55 0.00 0.00 3.85
1107 1113 4.131088 GCCGACTGTCCTCCGTCC 62.131 72.222 1.55 0.00 0.00 4.79
1108 1114 4.477975 CGCCGACTGTCCTCCGTC 62.478 72.222 1.55 0.00 0.00 4.79
1112 1118 2.125961 ATACCCGCCGACTGTCCTC 61.126 63.158 1.55 0.00 0.00 3.71
1113 1119 2.043248 ATACCCGCCGACTGTCCT 60.043 61.111 1.55 0.00 0.00 3.85
1114 1120 2.106332 CATACCCGCCGACTGTCC 59.894 66.667 1.55 0.00 0.00 4.02
1115 1121 2.106332 CCATACCCGCCGACTGTC 59.894 66.667 0.00 0.00 0.00 3.51
1116 1122 4.157120 GCCATACCCGCCGACTGT 62.157 66.667 0.00 0.00 0.00 3.55
1117 1123 4.910585 GGCCATACCCGCCGACTG 62.911 72.222 0.00 0.00 36.47 3.51
1125 1131 1.675720 AAATTGCTGCGGCCATACCC 61.676 55.000 16.57 0.00 37.74 3.69
1126 1132 0.175531 AAAATTGCTGCGGCCATACC 59.824 50.000 16.57 0.00 37.74 2.73
1127 1133 1.559831 GAAAATTGCTGCGGCCATAC 58.440 50.000 16.57 1.57 37.74 2.39
1128 1134 0.100325 CGAAAATTGCTGCGGCCATA 59.900 50.000 16.57 0.11 37.74 2.74
1129 1135 1.153784 CGAAAATTGCTGCGGCCAT 60.154 52.632 16.57 6.68 37.74 4.40
1130 1136 1.594194 ATCGAAAATTGCTGCGGCCA 61.594 50.000 16.57 3.79 37.74 5.36
1131 1137 1.139520 ATCGAAAATTGCTGCGGCC 59.860 52.632 16.57 0.00 37.74 6.13
1132 1138 0.179166 TCATCGAAAATTGCTGCGGC 60.179 50.000 11.65 11.65 39.26 6.53
1133 1139 2.480224 ATCATCGAAAATTGCTGCGG 57.520 45.000 0.00 0.00 0.00 5.69
1134 1140 3.173599 ACAATCATCGAAAATTGCTGCG 58.826 40.909 18.06 0.00 36.54 5.18
1135 1141 5.520022 AAACAATCATCGAAAATTGCTGC 57.480 34.783 18.06 0.00 36.54 5.25
1136 1142 7.005380 GTGAAAACAATCATCGAAAATTGCTG 58.995 34.615 18.06 0.00 36.54 4.41
1137 1143 6.925165 AGTGAAAACAATCATCGAAAATTGCT 59.075 30.769 18.06 7.75 36.54 3.91
1138 1144 7.109006 AGTGAAAACAATCATCGAAAATTGC 57.891 32.000 18.06 7.07 36.54 3.56
1140 1146 9.912634 ACATAGTGAAAACAATCATCGAAAATT 57.087 25.926 0.00 0.00 0.00 1.82
1141 1147 9.559958 GACATAGTGAAAACAATCATCGAAAAT 57.440 29.630 0.00 0.00 0.00 1.82
1142 1148 8.783093 AGACATAGTGAAAACAATCATCGAAAA 58.217 29.630 0.00 0.00 0.00 2.29
1143 1149 8.229811 CAGACATAGTGAAAACAATCATCGAAA 58.770 33.333 0.00 0.00 0.00 3.46
1144 1150 7.387673 ACAGACATAGTGAAAACAATCATCGAA 59.612 33.333 0.00 0.00 0.00 3.71
1145 1151 6.873605 ACAGACATAGTGAAAACAATCATCGA 59.126 34.615 0.00 0.00 0.00 3.59
1146 1152 6.957635 CACAGACATAGTGAAAACAATCATCG 59.042 38.462 0.00 0.00 39.30 3.84
1147 1153 8.032952 TCACAGACATAGTGAAAACAATCATC 57.967 34.615 0.00 0.00 42.57 2.92
1148 1154 7.984422 TCACAGACATAGTGAAAACAATCAT 57.016 32.000 0.00 0.00 42.57 2.45
1159 1165 8.559536 AGTTGTAACAAAATCACAGACATAGTG 58.440 33.333 0.00 0.00 38.32 2.74
1160 1166 8.677148 AGTTGTAACAAAATCACAGACATAGT 57.323 30.769 0.00 0.00 0.00 2.12
1162 1168 9.990360 TCTAGTTGTAACAAAATCACAGACATA 57.010 29.630 0.00 0.00 0.00 2.29
1163 1169 8.902540 TCTAGTTGTAACAAAATCACAGACAT 57.097 30.769 0.00 0.00 0.00 3.06
1164 1170 8.902540 ATCTAGTTGTAACAAAATCACAGACA 57.097 30.769 0.00 0.00 0.00 3.41
1165 1171 9.813080 GAATCTAGTTGTAACAAAATCACAGAC 57.187 33.333 0.00 0.00 0.00 3.51
1166 1172 8.708742 CGAATCTAGTTGTAACAAAATCACAGA 58.291 33.333 0.00 0.00 0.00 3.41
1167 1173 8.708742 TCGAATCTAGTTGTAACAAAATCACAG 58.291 33.333 0.00 0.00 0.00 3.66
1168 1174 8.596271 TCGAATCTAGTTGTAACAAAATCACA 57.404 30.769 0.00 0.00 0.00 3.58
1169 1175 9.314501 GTTCGAATCTAGTTGTAACAAAATCAC 57.685 33.333 0.00 0.00 0.00 3.06
1170 1176 9.047371 TGTTCGAATCTAGTTGTAACAAAATCA 57.953 29.630 0.00 0.00 0.00 2.57
1173 1179 9.658475 CAATGTTCGAATCTAGTTGTAACAAAA 57.342 29.630 0.00 0.00 29.75 2.44
1174 1180 8.832521 ACAATGTTCGAATCTAGTTGTAACAAA 58.167 29.630 0.00 0.00 29.75 2.83
1175 1181 8.373048 ACAATGTTCGAATCTAGTTGTAACAA 57.627 30.769 0.00 0.00 29.75 2.83
1176 1182 7.956420 ACAATGTTCGAATCTAGTTGTAACA 57.044 32.000 0.00 0.00 0.00 2.41
1186 1192 8.687242 TGTCTCTCTATTACAATGTTCGAATCT 58.313 33.333 0.00 0.00 0.00 2.40
1187 1193 8.858003 TGTCTCTCTATTACAATGTTCGAATC 57.142 34.615 0.00 0.00 0.00 2.52
1198 1204 9.628500 TGAGCTACTTTATGTCTCTCTATTACA 57.372 33.333 0.00 0.00 32.19 2.41
1277 1284 1.341679 GGAGGATTGTACCAAACCCCC 60.342 57.143 0.25 0.00 0.00 5.40
1509 1516 0.112995 TGCACAAGGGATTGGCTTCT 59.887 50.000 0.00 0.00 0.00 2.85
1650 1657 1.829849 CATCTTCTCCTGGAGTGCTCA 59.170 52.381 22.50 0.51 0.00 4.26
1652 1659 2.244486 TCATCTTCTCCTGGAGTGCT 57.756 50.000 22.50 6.77 0.00 4.40
1677 1684 2.121538 CGATCAGGCTCCGGAGACA 61.122 63.158 38.23 20.46 39.50 3.41
1803 1810 2.463589 TTACCTGGAAGTGCTGGGCG 62.464 60.000 0.00 0.00 0.00 6.13
1934 1941 3.302347 CTCGCCGAAACTGCCCTCT 62.302 63.158 0.00 0.00 0.00 3.69
1967 1974 3.901844 CCCGGAGATTGGAGAATACCTAA 59.098 47.826 0.73 0.00 0.00 2.69
2046 2053 1.569479 GCCGCAAGTCCAGAACTGTC 61.569 60.000 1.18 0.00 38.58 3.51
2064 2071 3.508840 CTCATCCCCAAACGGCGC 61.509 66.667 6.90 0.00 0.00 6.53
2139 2147 1.302192 GCCAACACGCCCTGTTCTA 60.302 57.895 0.00 0.00 41.50 2.10
2170 2178 0.537188 CTTCGCCTCCACTACCATGT 59.463 55.000 0.00 0.00 0.00 3.21
2237 2245 0.965439 GAGTCGATGATAGCAGGGCT 59.035 55.000 0.00 0.00 43.41 5.19
2329 2337 3.550431 TCTGCCGGCCTATCCAGC 61.550 66.667 26.77 0.00 38.76 4.85
2552 2560 1.302832 CAAGGTCGCTGGGAAGCTT 60.303 57.895 0.00 0.00 33.72 3.74
2681 2689 3.188786 GACATCGTGGACGCTGCC 61.189 66.667 3.07 0.00 38.86 4.85
2694 2702 2.107750 CCTCATCCGCTGCGACAT 59.892 61.111 25.45 12.08 0.00 3.06
2870 2878 1.744368 CCGAGTCATGCAGCAGCTT 60.744 57.895 0.00 0.00 42.74 3.74
3059 3072 2.680913 CGGCAACCGCTTCCTTGAG 61.681 63.158 0.00 0.00 41.17 3.02
3206 3219 3.616560 GCCTTCACGACAACTTCATCCTA 60.617 47.826 0.00 0.00 0.00 2.94
3450 3463 2.267681 GACCTCCGATGCGTCTTCGT 62.268 60.000 4.05 0.00 39.49 3.85
3473 3486 1.097232 CTTGCTGGCCGATCATCAAA 58.903 50.000 0.00 0.00 0.00 2.69
3616 3633 0.716108 CGACCTGTCGCAGTTCATTC 59.284 55.000 6.77 0.00 46.50 2.67
3635 3652 3.490759 CCGCGTGACTGCACCATC 61.491 66.667 4.92 0.00 42.09 3.51
3737 3754 0.769873 ACTGGATCCATGGCATCTCC 59.230 55.000 16.63 10.81 0.00 3.71
4337 4373 1.654023 AAATTTACCTCAGCGGCCGC 61.654 55.000 42.34 42.34 42.33 6.53
4431 4467 9.535878 CCGAAGTAGAAGAAAATCTAGCTAATT 57.464 33.333 0.00 0.00 32.72 1.40
4432 4468 8.915036 TCCGAAGTAGAAGAAAATCTAGCTAAT 58.085 33.333 0.00 0.00 32.72 1.73
4482 4518 9.292846 CATCGTTTGTGATGATCATTACAATTT 57.707 29.630 33.71 21.02 46.98 1.82
4496 4532 9.383519 AGAAATAATCAGTACATCGTTTGTGAT 57.616 29.630 0.00 0.00 39.48 3.06
4555 4592 3.614092 TCAAGGAATGTCAAGATCCTGC 58.386 45.455 6.09 0.00 42.72 4.85
4585 4622 2.296471 ACTTGACGGTTCTCGATCTTGT 59.704 45.455 0.00 0.00 42.43 3.16
4650 4687 5.185249 AGAACAATTAGGACTCGCTTAGACA 59.815 40.000 0.00 0.00 0.00 3.41
4783 4840 3.755965 TTGCAACTACATATTGGCACG 57.244 42.857 0.00 0.00 0.00 5.34
4867 4926 2.368311 AAGTTTTTGGCCGGACCTAA 57.632 45.000 3.83 6.25 40.22 2.69
5002 5165 5.063944 ACAAAGATGAGCAACACTATTAGCG 59.936 40.000 0.00 0.00 0.00 4.26
5091 5528 6.681368 GCCACCATAATCTGTCTTCAAATTCC 60.681 42.308 0.00 0.00 0.00 3.01
5148 5585 6.072618 GCTGTTCAGTCACTACTCACTAGTAA 60.073 42.308 0.00 0.00 37.75 2.24
5275 5729 3.755378 GCAGCAATTAATCTGGATCGGAT 59.245 43.478 6.36 0.00 0.00 4.18
5374 8737 8.180267 CGGAGCAAAATGGATGAATCTATAATC 58.820 37.037 0.00 0.00 0.00 1.75
5478 10012 1.013596 CTGACAGTGCCAAACAACGA 58.986 50.000 0.00 0.00 0.00 3.85
5480 10014 0.249031 GCCTGACAGTGCCAAACAAC 60.249 55.000 0.93 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.