Multiple sequence alignment - TraesCS3D01G172400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G172400 chr3D 100.000 3011 0 0 1 3011 152853028 152850018 0.000000e+00 5561.0
1 TraesCS3D01G172400 chr3D 94.515 948 49 2 801 1748 152702619 152701675 0.000000e+00 1459.0
2 TraesCS3D01G172400 chr3D 93.309 822 42 9 2201 3011 153084044 153083225 0.000000e+00 1201.0
3 TraesCS3D01G172400 chr3D 83.333 1350 140 37 895 2206 149770057 149768755 0.000000e+00 1168.0
4 TraesCS3D01G172400 chr3D 87.138 933 75 14 896 1808 141410503 141411410 0.000000e+00 1016.0
5 TraesCS3D01G172400 chr3D 82.666 1223 125 40 898 2089 149544145 149545311 0.000000e+00 1003.0
6 TraesCS3D01G172400 chr3D 82.648 1216 128 36 898 2089 149204984 149206140 0.000000e+00 1000.0
7 TraesCS3D01G172400 chr3D 84.653 1036 98 25 898 1912 147336118 147335123 0.000000e+00 976.0
8 TraesCS3D01G172400 chr3D 83.760 899 89 25 1039 1919 360691531 360692390 0.000000e+00 798.0
9 TraesCS3D01G172400 chr3D 89.552 536 26 10 1698 2207 152701800 152701269 0.000000e+00 652.0
10 TraesCS3D01G172400 chr3D 95.968 248 6 2 287 534 539666334 539666091 1.680000e-107 399.0
11 TraesCS3D01G172400 chr3D 95.951 247 7 1 287 533 267603711 267603468 6.050000e-107 398.0
12 TraesCS3D01G172400 chr3D 96.364 55 2 0 543 597 267603476 267603422 1.150000e-14 91.6
13 TraesCS3D01G172400 chr3B 92.706 2262 104 23 756 3011 224164633 224162427 0.000000e+00 3206.0
14 TraesCS3D01G172400 chr3B 91.881 2291 92 38 756 3011 224287115 224284884 0.000000e+00 3114.0
15 TraesCS3D01G172400 chr3B 91.622 2256 122 37 783 3011 223678126 223675911 0.000000e+00 3057.0
16 TraesCS3D01G172400 chr3B 95.376 692 22 4 784 1473 223558923 223558240 0.000000e+00 1092.0
17 TraesCS3D01G172400 chr3B 82.761 1311 140 36 869 2145 203345614 203346872 0.000000e+00 1090.0
18 TraesCS3D01G172400 chr3B 94.634 410 16 2 2607 3011 224319054 224318646 5.480000e-177 630.0
19 TraesCS3D01G172400 chr3B 91.924 421 32 2 794 1213 223690763 223690344 3.340000e-164 588.0
20 TraesCS3D01G172400 chr3B 87.313 536 27 16 1698 2207 223558131 223557611 2.600000e-160 575.0
21 TraesCS3D01G172400 chr3B 88.387 310 28 4 287 596 57244571 57244872 1.710000e-97 366.0
22 TraesCS3D01G172400 chr3B 88.387 310 28 4 287 596 57271993 57272294 1.710000e-97 366.0
23 TraesCS3D01G172400 chr3B 80.769 390 51 15 2201 2572 224319433 224319050 1.770000e-72 283.0
24 TraesCS3D01G172400 chr3B 77.931 290 49 11 13 290 53570653 53570367 1.860000e-37 167.0
25 TraesCS3D01G172400 chr3A 94.403 1340 52 8 827 2166 177671314 177672630 0.000000e+00 2037.0
26 TraesCS3D01G172400 chr3A 92.763 1133 55 9 1008 2135 177888055 177889165 0.000000e+00 1613.0
27 TraesCS3D01G172400 chr3A 83.603 1299 118 39 877 2143 159831883 159833118 0.000000e+00 1131.0
28 TraesCS3D01G172400 chr3A 92.186 819 35 10 2201 3011 177105075 177105872 0.000000e+00 1131.0
29 TraesCS3D01G172400 chr3A 95.092 163 6 2 2163 2323 177672706 177672868 3.850000e-64 255.0
30 TraesCS3D01G172400 chr3A 90.260 154 7 6 650 800 177671167 177671315 8.520000e-46 195.0
31 TraesCS3D01G172400 chr3A 90.769 65 3 1 2143 2207 177889197 177889258 1.920000e-12 84.2
32 TraesCS3D01G172400 chr6A 81.906 1238 128 40 936 2146 146441660 146440492 0.000000e+00 957.0
33 TraesCS3D01G172400 chr1D 96.761 247 5 1 287 533 49592033 49591790 2.790000e-110 409.0
34 TraesCS3D01G172400 chr1D 96.311 244 6 1 290 533 41501273 41501513 6.050000e-107 398.0
35 TraesCS3D01G172400 chr1D 91.246 297 18 4 287 583 269813519 269813231 6.050000e-107 398.0
36 TraesCS3D01G172400 chr1D 88.365 318 19 10 289 594 449375470 449375781 1.710000e-97 366.0
37 TraesCS3D01G172400 chr1D 84.561 285 25 8 15 289 2462724 2462999 6.400000e-67 265.0
38 TraesCS3D01G172400 chr1D 83.575 207 26 6 13 212 384847987 384847782 1.430000e-43 187.0
39 TraesCS3D01G172400 chrUn 88.387 310 28 4 287 596 334937825 334937524 1.710000e-97 366.0
40 TraesCS3D01G172400 chr5A 92.308 247 16 3 287 533 59194584 59194341 6.180000e-92 348.0
41 TraesCS3D01G172400 chr5B 87.379 309 18 9 289 597 633283958 633283671 4.810000e-88 335.0
42 TraesCS3D01G172400 chr5B 84.722 288 30 7 12 289 433868996 433869279 2.960000e-70 276.0
43 TraesCS3D01G172400 chr7D 83.168 303 21 15 304 605 414485450 414485177 1.790000e-62 250.0
44 TraesCS3D01G172400 chr2A 87.215 219 18 4 80 289 61817182 61816965 1.080000e-59 241.0
45 TraesCS3D01G172400 chr6D 78.767 292 46 12 12 290 56208361 56208073 6.630000e-42 182.0
46 TraesCS3D01G172400 chr1A 82.297 209 29 8 13 216 8266768 8266563 1.110000e-39 174.0
47 TraesCS3D01G172400 chr4B 78.195 266 45 9 36 290 633294293 633294030 1.120000e-34 158.0
48 TraesCS3D01G172400 chr1B 77.397 292 48 14 12 290 277964877 277964591 1.120000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G172400 chr3D 152850018 152853028 3010 True 5561.0 5561 100.000000 1 3011 1 chr3D.!!$R3 3010
1 TraesCS3D01G172400 chr3D 153083225 153084044 819 True 1201.0 1201 93.309000 2201 3011 1 chr3D.!!$R4 810
2 TraesCS3D01G172400 chr3D 149768755 149770057 1302 True 1168.0 1168 83.333000 895 2206 1 chr3D.!!$R2 1311
3 TraesCS3D01G172400 chr3D 152701269 152702619 1350 True 1055.5 1459 92.033500 801 2207 2 chr3D.!!$R6 1406
4 TraesCS3D01G172400 chr3D 141410503 141411410 907 False 1016.0 1016 87.138000 896 1808 1 chr3D.!!$F1 912
5 TraesCS3D01G172400 chr3D 149544145 149545311 1166 False 1003.0 1003 82.666000 898 2089 1 chr3D.!!$F3 1191
6 TraesCS3D01G172400 chr3D 149204984 149206140 1156 False 1000.0 1000 82.648000 898 2089 1 chr3D.!!$F2 1191
7 TraesCS3D01G172400 chr3D 147335123 147336118 995 True 976.0 976 84.653000 898 1912 1 chr3D.!!$R1 1014
8 TraesCS3D01G172400 chr3D 360691531 360692390 859 False 798.0 798 83.760000 1039 1919 1 chr3D.!!$F4 880
9 TraesCS3D01G172400 chr3B 224162427 224164633 2206 True 3206.0 3206 92.706000 756 3011 1 chr3B.!!$R4 2255
10 TraesCS3D01G172400 chr3B 224284884 224287115 2231 True 3114.0 3114 91.881000 756 3011 1 chr3B.!!$R5 2255
11 TraesCS3D01G172400 chr3B 223675911 223678126 2215 True 3057.0 3057 91.622000 783 3011 1 chr3B.!!$R2 2228
12 TraesCS3D01G172400 chr3B 203345614 203346872 1258 False 1090.0 1090 82.761000 869 2145 1 chr3B.!!$F3 1276
13 TraesCS3D01G172400 chr3B 223557611 223558923 1312 True 833.5 1092 91.344500 784 2207 2 chr3B.!!$R6 1423
14 TraesCS3D01G172400 chr3B 224318646 224319433 787 True 456.5 630 87.701500 2201 3011 2 chr3B.!!$R7 810
15 TraesCS3D01G172400 chr3A 159831883 159833118 1235 False 1131.0 1131 83.603000 877 2143 1 chr3A.!!$F1 1266
16 TraesCS3D01G172400 chr3A 177105075 177105872 797 False 1131.0 1131 92.186000 2201 3011 1 chr3A.!!$F2 810
17 TraesCS3D01G172400 chr3A 177888055 177889258 1203 False 848.6 1613 91.766000 1008 2207 2 chr3A.!!$F4 1199
18 TraesCS3D01G172400 chr3A 177671167 177672868 1701 False 829.0 2037 93.251667 650 2323 3 chr3A.!!$F3 1673
19 TraesCS3D01G172400 chr6A 146440492 146441660 1168 True 957.0 957 81.906000 936 2146 1 chr6A.!!$R1 1210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.099259 TATTAGTCGTGCCGTCGTGG 59.901 55.0 0.00 0.0 42.5 4.94 F
616 617 0.388649 CGCGGCCAGGTATGAGATAC 60.389 60.0 2.24 0.0 35.0 2.24 F
778 782 0.604243 ATAGCGCCAACCACGTCAAA 60.604 50.0 2.29 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 2129 0.106519 GGGGCTTATCATGTGTGGCT 60.107 55.0 0.0 0.0 0.00 4.75 R
1832 2132 1.027357 GCAGGGGCTTATCATGTGTG 58.973 55.0 0.0 0.0 36.96 3.82 R
2745 3294 0.940126 GCAACTGAGGCATATCACCG 59.060 55.0 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.821366 CCGTGCTTGGGCTGCTAG 60.821 66.667 0.00 0.00 39.59 3.42
32 33 3.503363 CGTGCTTGGGCTGCTAGC 61.503 66.667 8.10 8.10 41.46 3.42
45 46 4.880537 CTAGCCTGAGCACGCGGG 62.881 72.222 12.47 7.92 43.56 6.13
108 109 9.822727 TTCTATACATCTCTATATGACCCAACA 57.177 33.333 0.00 0.00 0.00 3.33
109 110 9.467796 TCTATACATCTCTATATGACCCAACAG 57.532 37.037 0.00 0.00 0.00 3.16
110 111 5.815233 ACATCTCTATATGACCCAACAGG 57.185 43.478 0.00 0.00 43.78 4.00
125 126 6.844097 CCCAACAGGTAAAAATAGGCTAAA 57.156 37.500 0.00 0.00 0.00 1.85
126 127 7.234661 CCCAACAGGTAAAAATAGGCTAAAA 57.765 36.000 0.00 0.00 0.00 1.52
127 128 7.672240 CCCAACAGGTAAAAATAGGCTAAAAA 58.328 34.615 0.00 0.00 0.00 1.94
149 150 1.651987 GCCTAGTGCGTCAAATAGCA 58.348 50.000 0.00 0.00 41.55 3.49
150 151 1.594862 GCCTAGTGCGTCAAATAGCAG 59.405 52.381 0.00 0.00 44.70 4.24
151 152 2.738643 GCCTAGTGCGTCAAATAGCAGA 60.739 50.000 0.00 0.00 44.70 4.26
152 153 2.860735 CCTAGTGCGTCAAATAGCAGAC 59.139 50.000 0.00 0.00 44.70 3.51
160 161 4.763594 GTCAAATAGCAGACGAACTAGC 57.236 45.455 0.00 0.00 0.00 3.42
161 162 4.174009 GTCAAATAGCAGACGAACTAGCA 58.826 43.478 0.00 0.00 0.00 3.49
162 163 4.266502 GTCAAATAGCAGACGAACTAGCAG 59.733 45.833 0.00 0.00 0.00 4.24
163 164 3.444703 AATAGCAGACGAACTAGCAGG 57.555 47.619 0.00 0.00 0.00 4.85
164 165 1.835494 TAGCAGACGAACTAGCAGGT 58.165 50.000 0.00 0.00 0.00 4.00
165 166 0.528470 AGCAGACGAACTAGCAGGTC 59.472 55.000 0.00 0.00 0.00 3.85
166 167 0.528470 GCAGACGAACTAGCAGGTCT 59.472 55.000 4.78 4.78 40.19 3.85
168 169 1.178276 AGACGAACTAGCAGGTCTGG 58.822 55.000 8.79 0.00 38.27 3.86
169 170 0.458716 GACGAACTAGCAGGTCTGGC 60.459 60.000 0.00 0.00 27.14 4.85
170 171 1.517257 CGAACTAGCAGGTCTGGCG 60.517 63.158 0.00 0.00 36.08 5.69
171 172 1.592223 GAACTAGCAGGTCTGGCGT 59.408 57.895 0.00 0.00 36.08 5.68
172 173 0.737715 GAACTAGCAGGTCTGGCGTG 60.738 60.000 0.00 0.00 36.08 5.34
173 174 1.185618 AACTAGCAGGTCTGGCGTGA 61.186 55.000 6.09 0.00 35.14 4.35
174 175 1.140589 CTAGCAGGTCTGGCGTGAG 59.859 63.158 6.09 0.00 35.14 3.51
175 176 2.290122 CTAGCAGGTCTGGCGTGAGG 62.290 65.000 6.09 0.00 35.14 3.86
176 177 4.767255 GCAGGTCTGGCGTGAGGG 62.767 72.222 6.09 0.00 35.14 4.30
177 178 3.314331 CAGGTCTGGCGTGAGGGT 61.314 66.667 0.00 0.00 35.14 4.34
178 179 3.314331 AGGTCTGGCGTGAGGGTG 61.314 66.667 0.00 0.00 0.00 4.61
179 180 4.394712 GGTCTGGCGTGAGGGTGG 62.395 72.222 0.00 0.00 0.00 4.61
180 181 4.394712 GTCTGGCGTGAGGGTGGG 62.395 72.222 0.00 0.00 0.00 4.61
197 198 3.062370 GGCCGCCCCTATTAGTAGA 57.938 57.895 0.00 0.00 0.00 2.59
198 199 1.569653 GGCCGCCCCTATTAGTAGAT 58.430 55.000 0.00 0.00 0.00 1.98
199 200 1.207329 GGCCGCCCCTATTAGTAGATG 59.793 57.143 0.00 0.00 0.00 2.90
200 201 1.207329 GCCGCCCCTATTAGTAGATGG 59.793 57.143 0.00 0.00 0.00 3.51
201 202 1.207329 CCGCCCCTATTAGTAGATGGC 59.793 57.143 12.75 12.75 39.91 4.40
202 203 1.207329 CGCCCCTATTAGTAGATGGCC 59.793 57.143 15.41 0.00 40.05 5.36
203 204 1.207329 GCCCCTATTAGTAGATGGCCG 59.793 57.143 12.09 0.00 38.59 6.13
204 205 2.537143 CCCCTATTAGTAGATGGCCGT 58.463 52.381 0.00 0.00 0.00 5.68
205 206 2.233922 CCCCTATTAGTAGATGGCCGTG 59.766 54.545 0.00 0.00 0.00 4.94
206 207 2.353803 CCCTATTAGTAGATGGCCGTGC 60.354 54.545 0.00 0.00 0.00 5.34
220 221 4.643387 GTGCCTGGGTTGCGACCT 62.643 66.667 22.72 0.00 45.75 3.85
221 222 4.329545 TGCCTGGGTTGCGACCTC 62.330 66.667 22.72 13.13 45.75 3.85
222 223 4.021925 GCCTGGGTTGCGACCTCT 62.022 66.667 22.72 0.00 45.75 3.69
223 224 2.046892 CCTGGGTTGCGACCTCTG 60.047 66.667 22.72 15.20 45.75 3.35
224 225 2.046892 CTGGGTTGCGACCTCTGG 60.047 66.667 22.72 6.89 45.75 3.86
225 226 4.329545 TGGGTTGCGACCTCTGGC 62.330 66.667 22.72 6.24 45.75 4.85
249 250 2.278989 GGCACGACGCGGCTATTA 60.279 61.111 11.76 0.00 43.84 0.98
250 251 2.300787 GGCACGACGCGGCTATTAG 61.301 63.158 11.76 0.00 43.84 1.73
251 252 1.588139 GCACGACGCGGCTATTAGT 60.588 57.895 11.76 0.00 0.00 2.24
252 253 1.538117 GCACGACGCGGCTATTAGTC 61.538 60.000 11.76 0.00 0.00 2.59
254 255 1.010350 CGACGCGGCTATTAGTCGT 60.010 57.895 18.08 12.08 46.51 4.34
256 257 3.221956 CGCGGCTATTAGTCGTGC 58.778 61.111 17.17 2.10 46.88 5.34
257 258 2.300787 CGCGGCTATTAGTCGTGCC 61.301 63.158 17.17 1.53 46.88 5.01
260 261 2.882793 GGCTATTAGTCGTGCCGTC 58.117 57.895 0.00 0.00 35.79 4.79
261 262 0.933509 GGCTATTAGTCGTGCCGTCG 60.934 60.000 0.00 0.00 35.79 5.12
262 263 0.248377 GCTATTAGTCGTGCCGTCGT 60.248 55.000 0.00 0.00 0.00 4.34
263 264 1.463805 CTATTAGTCGTGCCGTCGTG 58.536 55.000 0.00 0.00 0.00 4.35
264 265 0.099259 TATTAGTCGTGCCGTCGTGG 59.901 55.000 0.00 0.00 42.50 4.94
265 266 2.552585 ATTAGTCGTGCCGTCGTGGG 62.553 60.000 0.00 0.00 38.63 4.61
291 292 4.371975 TGCCAGGCACGTTTAGAC 57.628 55.556 11.22 0.00 31.71 2.59
292 293 1.752198 TGCCAGGCACGTTTAGACT 59.248 52.632 11.22 0.00 31.71 3.24
293 294 0.970640 TGCCAGGCACGTTTAGACTA 59.029 50.000 11.22 0.00 31.71 2.59
294 295 1.337447 TGCCAGGCACGTTTAGACTAC 60.337 52.381 11.22 0.00 31.71 2.73
295 296 1.067071 GCCAGGCACGTTTAGACTACT 60.067 52.381 6.55 0.00 0.00 2.57
296 297 2.877335 CCAGGCACGTTTAGACTACTC 58.123 52.381 0.00 0.00 0.00 2.59
297 298 2.230508 CCAGGCACGTTTAGACTACTCA 59.769 50.000 0.00 0.00 0.00 3.41
298 299 3.243336 CAGGCACGTTTAGACTACTCAC 58.757 50.000 0.00 0.00 0.00 3.51
299 300 2.889045 AGGCACGTTTAGACTACTCACA 59.111 45.455 0.00 0.00 0.00 3.58
300 301 3.319972 AGGCACGTTTAGACTACTCACAA 59.680 43.478 0.00 0.00 0.00 3.33
301 302 4.021368 AGGCACGTTTAGACTACTCACAAT 60.021 41.667 0.00 0.00 0.00 2.71
302 303 4.091509 GGCACGTTTAGACTACTCACAATG 59.908 45.833 0.00 0.00 0.00 2.82
303 304 4.091509 GCACGTTTAGACTACTCACAATGG 59.908 45.833 0.00 0.00 0.00 3.16
304 305 4.625742 CACGTTTAGACTACTCACAATGGG 59.374 45.833 0.00 0.00 0.00 4.00
305 306 4.525487 ACGTTTAGACTACTCACAATGGGA 59.475 41.667 0.00 0.00 0.00 4.37
306 307 5.103000 CGTTTAGACTACTCACAATGGGAG 58.897 45.833 11.53 11.53 38.36 4.30
307 308 5.336531 CGTTTAGACTACTCACAATGGGAGT 60.337 44.000 22.65 22.65 46.71 3.85
308 309 6.127814 CGTTTAGACTACTCACAATGGGAGTA 60.128 42.308 22.46 22.46 43.50 2.59
309 310 7.576287 CGTTTAGACTACTCACAATGGGAGTAA 60.576 40.741 23.71 9.88 44.69 2.24
310 311 5.662674 AGACTACTCACAATGGGAGTAAC 57.337 43.478 23.71 19.52 44.69 2.50
311 312 5.084519 AGACTACTCACAATGGGAGTAACA 58.915 41.667 23.71 6.62 44.69 2.41
312 313 5.047235 AGACTACTCACAATGGGAGTAACAC 60.047 44.000 23.71 17.18 44.69 3.32
313 314 4.591498 ACTACTCACAATGGGAGTAACACA 59.409 41.667 23.71 5.90 44.69 3.72
314 315 4.008074 ACTCACAATGGGAGTAACACAG 57.992 45.455 17.66 0.00 43.50 3.66
315 316 3.244561 ACTCACAATGGGAGTAACACAGG 60.245 47.826 17.66 0.00 43.50 4.00
316 317 2.708861 TCACAATGGGAGTAACACAGGT 59.291 45.455 0.00 0.00 34.42 4.00
317 318 3.904965 TCACAATGGGAGTAACACAGGTA 59.095 43.478 0.00 0.00 34.42 3.08
318 319 4.020573 TCACAATGGGAGTAACACAGGTAG 60.021 45.833 0.00 0.00 34.42 3.18
319 320 3.908103 ACAATGGGAGTAACACAGGTAGT 59.092 43.478 0.00 0.00 34.42 2.73
320 321 5.046878 CACAATGGGAGTAACACAGGTAGTA 60.047 44.000 0.00 0.00 34.42 1.82
321 322 5.544948 ACAATGGGAGTAACACAGGTAGTAA 59.455 40.000 0.00 0.00 34.42 2.24
322 323 5.672421 ATGGGAGTAACACAGGTAGTAAC 57.328 43.478 0.00 0.00 34.42 2.50
323 324 4.482030 TGGGAGTAACACAGGTAGTAACA 58.518 43.478 0.00 0.00 0.00 2.41
324 325 5.088730 TGGGAGTAACACAGGTAGTAACAT 58.911 41.667 0.00 0.00 0.00 2.71
325 326 5.186409 TGGGAGTAACACAGGTAGTAACATC 59.814 44.000 0.00 0.00 0.00 3.06
326 327 5.186409 GGGAGTAACACAGGTAGTAACATCA 59.814 44.000 0.00 0.00 0.00 3.07
327 328 6.098017 GGAGTAACACAGGTAGTAACATCAC 58.902 44.000 0.00 0.00 0.00 3.06
328 329 6.294899 GGAGTAACACAGGTAGTAACATCACA 60.295 42.308 0.00 0.00 0.00 3.58
329 330 6.453092 AGTAACACAGGTAGTAACATCACAC 58.547 40.000 0.00 0.00 0.00 3.82
330 331 4.948341 ACACAGGTAGTAACATCACACA 57.052 40.909 0.00 0.00 0.00 3.72
331 332 5.483685 ACACAGGTAGTAACATCACACAT 57.516 39.130 0.00 0.00 0.00 3.21
332 333 6.599356 ACACAGGTAGTAACATCACACATA 57.401 37.500 0.00 0.00 0.00 2.29
333 334 7.182817 ACACAGGTAGTAACATCACACATAT 57.817 36.000 0.00 0.00 0.00 1.78
334 335 7.265673 ACACAGGTAGTAACATCACACATATC 58.734 38.462 0.00 0.00 0.00 1.63
335 336 7.124298 ACACAGGTAGTAACATCACACATATCT 59.876 37.037 0.00 0.00 0.00 1.98
336 337 8.630037 CACAGGTAGTAACATCACACATATCTA 58.370 37.037 0.00 0.00 0.00 1.98
337 338 8.851145 ACAGGTAGTAACATCACACATATCTAG 58.149 37.037 0.00 0.00 0.00 2.43
338 339 9.067986 CAGGTAGTAACATCACACATATCTAGA 57.932 37.037 0.00 0.00 0.00 2.43
339 340 9.815306 AGGTAGTAACATCACACATATCTAGAT 57.185 33.333 10.73 10.73 0.00 1.98
371 372 9.590451 AAATGATGTGGCAAGTAATAAATGAAG 57.410 29.630 0.00 0.00 0.00 3.02
372 373 7.936496 TGATGTGGCAAGTAATAAATGAAGA 57.064 32.000 0.00 0.00 0.00 2.87
373 374 8.347004 TGATGTGGCAAGTAATAAATGAAGAA 57.653 30.769 0.00 0.00 0.00 2.52
374 375 8.801299 TGATGTGGCAAGTAATAAATGAAGAAA 58.199 29.630 0.00 0.00 0.00 2.52
375 376 9.294030 GATGTGGCAAGTAATAAATGAAGAAAG 57.706 33.333 0.00 0.00 0.00 2.62
376 377 8.402798 TGTGGCAAGTAATAAATGAAGAAAGA 57.597 30.769 0.00 0.00 0.00 2.52
377 378 8.514594 TGTGGCAAGTAATAAATGAAGAAAGAG 58.485 33.333 0.00 0.00 0.00 2.85
378 379 8.515414 GTGGCAAGTAATAAATGAAGAAAGAGT 58.485 33.333 0.00 0.00 0.00 3.24
379 380 8.514594 TGGCAAGTAATAAATGAAGAAAGAGTG 58.485 33.333 0.00 0.00 0.00 3.51
380 381 7.970614 GGCAAGTAATAAATGAAGAAAGAGTGG 59.029 37.037 0.00 0.00 0.00 4.00
381 382 8.730680 GCAAGTAATAAATGAAGAAAGAGTGGA 58.269 33.333 0.00 0.00 0.00 4.02
387 388 6.396829 AAATGAAGAAAGAGTGGAAAGTGG 57.603 37.500 0.00 0.00 0.00 4.00
388 389 4.503714 TGAAGAAAGAGTGGAAAGTGGT 57.496 40.909 0.00 0.00 0.00 4.16
389 390 5.623956 TGAAGAAAGAGTGGAAAGTGGTA 57.376 39.130 0.00 0.00 0.00 3.25
390 391 5.996644 TGAAGAAAGAGTGGAAAGTGGTAA 58.003 37.500 0.00 0.00 0.00 2.85
391 392 5.820947 TGAAGAAAGAGTGGAAAGTGGTAAC 59.179 40.000 0.00 0.00 0.00 2.50
431 432 9.902684 ACTAGTAGTAGTAGTAACATCACACAT 57.097 33.333 14.84 0.00 37.76 3.21
438 439 9.464714 GTAGTAGTAACATCACACATATCAAGG 57.535 37.037 0.00 0.00 0.00 3.61
439 440 6.986817 AGTAGTAACATCACACATATCAAGGC 59.013 38.462 0.00 0.00 0.00 4.35
440 441 5.744171 AGTAACATCACACATATCAAGGCA 58.256 37.500 0.00 0.00 0.00 4.75
441 442 6.179756 AGTAACATCACACATATCAAGGCAA 58.820 36.000 0.00 0.00 0.00 4.52
442 443 5.571784 AACATCACACATATCAAGGCAAG 57.428 39.130 0.00 0.00 0.00 4.01
443 444 4.847198 ACATCACACATATCAAGGCAAGA 58.153 39.130 0.00 0.00 0.00 3.02
444 445 5.443283 ACATCACACATATCAAGGCAAGAT 58.557 37.500 0.00 0.00 0.00 2.40
445 446 5.298527 ACATCACACATATCAAGGCAAGATG 59.701 40.000 0.00 0.00 36.24 2.90
446 447 4.847198 TCACACATATCAAGGCAAGATGT 58.153 39.130 2.43 0.00 0.00 3.06
449 450 5.165911 CACATATCAAGGCAAGATGTGTC 57.834 43.478 15.13 0.00 43.18 3.67
451 452 6.051074 CACATATCAAGGCAAGATGTGTCTA 58.949 40.000 15.13 0.00 43.11 2.59
452 453 6.709397 CACATATCAAGGCAAGATGTGTCTAT 59.291 38.462 15.13 0.00 43.11 1.98
453 454 7.874528 CACATATCAAGGCAAGATGTGTCTATA 59.125 37.037 15.13 0.00 43.11 1.31
454 455 8.093307 ACATATCAAGGCAAGATGTGTCTATAG 58.907 37.037 13.16 0.00 43.11 1.31
455 456 4.697514 TCAAGGCAAGATGTGTCTATAGC 58.302 43.478 0.00 0.00 43.11 2.97
456 457 3.760580 AGGCAAGATGTGTCTATAGCC 57.239 47.619 0.00 0.00 41.69 3.93
457 458 3.312890 AGGCAAGATGTGTCTATAGCCT 58.687 45.455 11.05 11.05 41.69 4.58
458 459 4.483950 AGGCAAGATGTGTCTATAGCCTA 58.516 43.478 13.74 0.00 46.63 3.93
459 460 4.901849 AGGCAAGATGTGTCTATAGCCTAA 59.098 41.667 13.74 0.00 46.63 2.69
460 461 5.545723 AGGCAAGATGTGTCTATAGCCTAAT 59.454 40.000 13.74 0.00 46.63 1.73
461 462 6.726299 AGGCAAGATGTGTCTATAGCCTAATA 59.274 38.462 13.74 0.00 46.63 0.98
462 463 7.235606 AGGCAAGATGTGTCTATAGCCTAATAA 59.764 37.037 13.74 0.00 46.63 1.40
463 464 7.878127 GGCAAGATGTGTCTATAGCCTAATAAA 59.122 37.037 0.00 0.00 40.78 1.40
464 465 9.442047 GCAAGATGTGTCTATAGCCTAATAAAT 57.558 33.333 0.00 0.00 33.30 1.40
470 471 9.764363 TGTGTCTATAGCCTAATAAATGAAGTG 57.236 33.333 0.00 0.00 0.00 3.16
471 472 8.713271 GTGTCTATAGCCTAATAAATGAAGTGC 58.287 37.037 0.00 0.00 0.00 4.40
472 473 8.651389 TGTCTATAGCCTAATAAATGAAGTGCT 58.349 33.333 0.00 0.00 0.00 4.40
473 474 9.495572 GTCTATAGCCTAATAAATGAAGTGCTT 57.504 33.333 0.00 0.00 0.00 3.91
474 475 9.712305 TCTATAGCCTAATAAATGAAGTGCTTC 57.288 33.333 5.07 5.07 39.91 3.86
485 486 3.814625 TGAAGTGCTTCATGTTACCACA 58.185 40.909 10.26 0.00 43.90 4.17
486 487 3.563808 TGAAGTGCTTCATGTTACCACAC 59.436 43.478 10.26 0.00 43.90 3.82
487 488 3.207265 AGTGCTTCATGTTACCACACA 57.793 42.857 0.00 0.00 35.03 3.72
488 489 3.754965 AGTGCTTCATGTTACCACACAT 58.245 40.909 0.00 0.00 37.93 3.21
489 490 4.905429 AGTGCTTCATGTTACCACACATA 58.095 39.130 0.00 0.00 35.51 2.29
490 491 5.500234 AGTGCTTCATGTTACCACACATAT 58.500 37.500 0.00 0.00 35.51 1.78
491 492 5.355071 AGTGCTTCATGTTACCACACATATG 59.645 40.000 0.00 0.00 35.51 1.78
492 493 5.123820 GTGCTTCATGTTACCACACATATGT 59.876 40.000 1.41 1.41 40.80 2.29
493 494 5.709631 TGCTTCATGTTACCACACATATGTT 59.290 36.000 5.37 0.00 36.72 2.71
494 495 6.881602 TGCTTCATGTTACCACACATATGTTA 59.118 34.615 5.37 0.00 36.72 2.41
495 496 7.148323 TGCTTCATGTTACCACACATATGTTAC 60.148 37.037 5.37 0.00 36.72 2.50
496 497 7.065803 GCTTCATGTTACCACACATATGTTACT 59.934 37.037 5.37 0.00 36.72 2.24
497 498 8.487313 TTCATGTTACCACACATATGTTACTC 57.513 34.615 5.37 0.00 36.72 2.59
498 499 7.045416 TCATGTTACCACACATATGTTACTCC 58.955 38.462 5.37 0.00 36.72 3.85
499 500 5.736813 TGTTACCACACATATGTTACTCCC 58.263 41.667 5.37 0.00 36.72 4.30
500 501 3.926058 ACCACACATATGTTACTCCCC 57.074 47.619 5.37 0.00 36.72 4.81
501 502 3.186283 ACCACACATATGTTACTCCCCA 58.814 45.455 5.37 0.00 36.72 4.96
502 503 3.054655 ACCACACATATGTTACTCCCCAC 60.055 47.826 5.37 0.00 36.72 4.61
503 504 3.199946 CCACACATATGTTACTCCCCACT 59.800 47.826 5.37 0.00 36.72 4.00
504 505 4.191544 CACACATATGTTACTCCCCACTG 58.808 47.826 5.37 0.00 36.72 3.66
505 506 3.844211 ACACATATGTTACTCCCCACTGT 59.156 43.478 5.37 0.00 34.46 3.55
506 507 5.027460 ACACATATGTTACTCCCCACTGTA 58.973 41.667 5.37 0.00 34.46 2.74
507 508 5.128827 ACACATATGTTACTCCCCACTGTAG 59.871 44.000 5.37 0.00 34.46 2.74
508 509 5.362717 CACATATGTTACTCCCCACTGTAGA 59.637 44.000 5.37 0.00 0.00 2.59
509 510 5.598830 ACATATGTTACTCCCCACTGTAGAG 59.401 44.000 1.41 1.43 0.00 2.43
510 511 2.816411 TGTTACTCCCCACTGTAGAGG 58.184 52.381 6.62 0.00 31.70 3.69
511 512 2.111255 TGTTACTCCCCACTGTAGAGGT 59.889 50.000 6.62 0.00 31.70 3.85
512 513 3.334581 TGTTACTCCCCACTGTAGAGGTA 59.665 47.826 6.62 0.00 31.70 3.08
513 514 2.830651 ACTCCCCACTGTAGAGGTAG 57.169 55.000 6.62 0.00 31.70 3.18
514 515 2.001558 ACTCCCCACTGTAGAGGTAGT 58.998 52.381 6.62 0.00 31.70 2.73
515 516 3.196300 ACTCCCCACTGTAGAGGTAGTA 58.804 50.000 6.62 0.00 31.70 1.82
516 517 3.595138 ACTCCCCACTGTAGAGGTAGTAA 59.405 47.826 6.62 0.00 31.70 2.24
517 518 3.952967 CTCCCCACTGTAGAGGTAGTAAC 59.047 52.174 0.00 0.00 0.00 2.50
518 519 3.334581 TCCCCACTGTAGAGGTAGTAACA 59.665 47.826 0.00 0.00 0.00 2.41
519 520 4.016851 TCCCCACTGTAGAGGTAGTAACAT 60.017 45.833 0.00 0.00 0.00 2.71
520 521 5.194334 TCCCCACTGTAGAGGTAGTAACATA 59.806 44.000 0.00 0.00 0.00 2.29
521 522 5.535406 CCCCACTGTAGAGGTAGTAACATAG 59.465 48.000 0.00 0.00 0.00 2.23
522 523 6.363065 CCCACTGTAGAGGTAGTAACATAGA 58.637 44.000 0.00 0.00 0.00 1.98
523 524 6.487331 CCCACTGTAGAGGTAGTAACATAGAG 59.513 46.154 0.00 0.00 0.00 2.43
524 525 7.055378 CCACTGTAGAGGTAGTAACATAGAGT 58.945 42.308 0.00 0.00 0.00 3.24
525 526 8.209584 CCACTGTAGAGGTAGTAACATAGAGTA 58.790 40.741 1.47 0.00 0.00 2.59
526 527 9.263538 CACTGTAGAGGTAGTAACATAGAGTAG 57.736 40.741 1.47 0.00 0.00 2.57
527 528 8.991275 ACTGTAGAGGTAGTAACATAGAGTAGT 58.009 37.037 0.00 0.00 0.00 2.73
534 535 9.270640 AGGTAGTAACATAGAGTAGTAACATCG 57.729 37.037 0.00 0.00 0.00 3.84
535 536 9.265901 GGTAGTAACATAGAGTAGTAACATCGA 57.734 37.037 0.00 0.00 0.00 3.59
537 538 8.728337 AGTAACATAGAGTAGTAACATCGACA 57.272 34.615 0.00 0.00 0.00 4.35
538 539 8.828644 AGTAACATAGAGTAGTAACATCGACAG 58.171 37.037 0.00 0.00 0.00 3.51
539 540 7.860918 AACATAGAGTAGTAACATCGACAGA 57.139 36.000 0.00 0.00 0.00 3.41
540 541 7.485418 ACATAGAGTAGTAACATCGACAGAG 57.515 40.000 0.00 0.00 0.00 3.35
541 542 6.483974 ACATAGAGTAGTAACATCGACAGAGG 59.516 42.308 0.00 0.00 0.00 3.69
542 543 4.846040 AGAGTAGTAACATCGACAGAGGT 58.154 43.478 0.00 0.00 43.98 3.85
543 544 5.987098 AGAGTAGTAACATCGACAGAGGTA 58.013 41.667 0.00 0.00 40.91 3.08
544 545 6.050432 AGAGTAGTAACATCGACAGAGGTAG 58.950 44.000 0.00 0.00 40.91 3.18
545 546 5.743117 AGTAGTAACATCGACAGAGGTAGT 58.257 41.667 0.00 0.00 40.91 2.73
546 547 6.882656 AGTAGTAACATCGACAGAGGTAGTA 58.117 40.000 0.00 0.00 40.91 1.82
547 548 7.334090 AGTAGTAACATCGACAGAGGTAGTAA 58.666 38.462 0.00 0.00 40.91 2.24
548 549 6.434018 AGTAACATCGACAGAGGTAGTAAC 57.566 41.667 0.00 0.00 40.91 2.50
549 550 5.942236 AGTAACATCGACAGAGGTAGTAACA 59.058 40.000 0.00 0.00 40.91 2.41
550 551 5.916661 AACATCGACAGAGGTAGTAACAT 57.083 39.130 0.00 0.00 40.91 2.71
551 552 5.250235 ACATCGACAGAGGTAGTAACATG 57.750 43.478 0.00 0.00 39.88 3.21
552 553 4.705507 ACATCGACAGAGGTAGTAACATGT 59.294 41.667 0.00 0.00 39.88 3.21
553 554 4.959596 TCGACAGAGGTAGTAACATGTC 57.040 45.455 0.00 11.62 34.38 3.06
554 555 3.681855 CGACAGAGGTAGTAACATGTCG 58.318 50.000 23.14 23.14 44.51 4.35
555 556 4.959596 GACAGAGGTAGTAACATGTCGA 57.040 45.455 0.00 0.00 30.48 4.20
556 557 5.502153 GACAGAGGTAGTAACATGTCGAT 57.498 43.478 0.00 0.00 30.48 3.59
557 558 5.250235 ACAGAGGTAGTAACATGTCGATG 57.750 43.478 0.00 0.00 35.49 3.84
558 559 4.705507 ACAGAGGTAGTAACATGTCGATGT 59.294 41.667 0.00 0.00 45.24 3.06
571 572 7.569639 ACATGTCGATGTTACTACTCTATGT 57.430 36.000 0.00 0.00 40.05 2.29
572 573 7.997482 ACATGTCGATGTTACTACTCTATGTT 58.003 34.615 0.00 0.00 40.05 2.71
573 574 9.117183 ACATGTCGATGTTACTACTCTATGTTA 57.883 33.333 0.00 0.00 40.05 2.41
574 575 9.383462 CATGTCGATGTTACTACTCTATGTTAC 57.617 37.037 0.00 0.00 0.00 2.50
575 576 8.728337 TGTCGATGTTACTACTCTATGTTACT 57.272 34.615 0.00 0.00 0.00 2.24
576 577 9.822185 TGTCGATGTTACTACTCTATGTTACTA 57.178 33.333 0.00 0.00 0.00 1.82
578 579 9.265901 TCGATGTTACTACTCTATGTTACTACC 57.734 37.037 0.00 0.00 0.00 3.18
579 580 8.502387 CGATGTTACTACTCTATGTTACTACCC 58.498 40.741 0.00 0.00 0.00 3.69
580 581 9.347240 GATGTTACTACTCTATGTTACTACCCA 57.653 37.037 0.00 0.00 0.00 4.51
581 582 9.878737 ATGTTACTACTCTATGTTACTACCCAT 57.121 33.333 0.00 0.00 0.00 4.00
582 583 9.705103 TGTTACTACTCTATGTTACTACCCATT 57.295 33.333 0.00 0.00 0.00 3.16
583 584 9.962783 GTTACTACTCTATGTTACTACCCATTG 57.037 37.037 0.00 0.00 0.00 2.82
584 585 9.705103 TTACTACTCTATGTTACTACCCATTGT 57.295 33.333 0.00 0.00 0.00 2.71
585 586 8.008513 ACTACTCTATGTTACTACCCATTGTG 57.991 38.462 0.00 0.00 0.00 3.33
586 587 6.869206 ACTCTATGTTACTACCCATTGTGT 57.131 37.500 0.00 0.00 0.00 3.72
587 588 6.875076 ACTCTATGTTACTACCCATTGTGTC 58.125 40.000 0.00 0.00 0.00 3.67
588 589 6.668283 ACTCTATGTTACTACCCATTGTGTCT 59.332 38.462 0.00 0.00 0.00 3.41
589 590 7.837689 ACTCTATGTTACTACCCATTGTGTCTA 59.162 37.037 0.00 0.00 0.00 2.59
590 591 8.234136 TCTATGTTACTACCCATTGTGTCTAG 57.766 38.462 0.00 0.00 0.00 2.43
591 592 6.869206 ATGTTACTACCCATTGTGTCTAGT 57.131 37.500 0.00 0.00 0.00 2.57
592 593 6.276832 TGTTACTACCCATTGTGTCTAGTC 57.723 41.667 0.00 0.00 0.00 2.59
593 594 6.014647 TGTTACTACCCATTGTGTCTAGTCT 58.985 40.000 0.00 0.00 0.00 3.24
594 595 6.495872 TGTTACTACCCATTGTGTCTAGTCTT 59.504 38.462 0.00 0.00 0.00 3.01
595 596 7.670979 TGTTACTACCCATTGTGTCTAGTCTTA 59.329 37.037 0.00 0.00 0.00 2.10
596 597 6.527057 ACTACCCATTGTGTCTAGTCTTAC 57.473 41.667 0.00 0.00 0.00 2.34
597 598 4.820894 ACCCATTGTGTCTAGTCTTACC 57.179 45.455 0.00 0.00 0.00 2.85
598 599 3.194968 ACCCATTGTGTCTAGTCTTACCG 59.805 47.826 0.00 0.00 0.00 4.02
599 600 3.187700 CCATTGTGTCTAGTCTTACCGC 58.812 50.000 0.00 0.00 0.00 5.68
600 601 2.624316 TTGTGTCTAGTCTTACCGCG 57.376 50.000 0.00 0.00 0.00 6.46
601 602 0.806868 TGTGTCTAGTCTTACCGCGG 59.193 55.000 26.86 26.86 0.00 6.46
602 603 0.525029 GTGTCTAGTCTTACCGCGGC 60.525 60.000 28.58 8.62 0.00 6.53
603 604 1.065436 GTCTAGTCTTACCGCGGCC 59.935 63.158 28.58 8.23 0.00 6.13
604 605 1.378911 TCTAGTCTTACCGCGGCCA 60.379 57.895 28.58 11.22 0.00 5.36
605 606 1.065928 CTAGTCTTACCGCGGCCAG 59.934 63.158 28.58 21.57 0.00 4.85
606 607 2.351336 CTAGTCTTACCGCGGCCAGG 62.351 65.000 28.58 14.47 0.00 4.45
607 608 4.078516 GTCTTACCGCGGCCAGGT 62.079 66.667 28.58 21.78 45.28 4.00
608 609 2.362760 TCTTACCGCGGCCAGGTA 60.363 61.111 28.58 19.86 42.81 3.08
609 610 1.759299 TCTTACCGCGGCCAGGTAT 60.759 57.895 28.58 6.16 43.07 2.73
610 611 1.594293 CTTACCGCGGCCAGGTATG 60.594 63.158 28.58 21.02 43.07 2.39
611 612 2.023414 CTTACCGCGGCCAGGTATGA 62.023 60.000 28.58 13.52 43.07 2.15
612 613 2.023414 TTACCGCGGCCAGGTATGAG 62.023 60.000 28.58 0.00 43.07 2.90
613 614 2.914756 TACCGCGGCCAGGTATGAGA 62.915 60.000 28.58 3.30 42.81 3.27
614 615 2.737180 CGCGGCCAGGTATGAGAT 59.263 61.111 2.24 0.00 0.00 2.75
615 616 1.532604 CCGCGGCCAGGTATGAGATA 61.533 60.000 14.67 0.00 0.00 1.98
616 617 0.388649 CGCGGCCAGGTATGAGATAC 60.389 60.000 2.24 0.00 35.00 2.24
617 618 0.679505 GCGGCCAGGTATGAGATACA 59.320 55.000 2.24 0.00 37.48 2.29
618 619 1.605712 GCGGCCAGGTATGAGATACAC 60.606 57.143 2.24 0.00 37.48 2.90
619 620 1.000955 CGGCCAGGTATGAGATACACC 59.999 57.143 2.24 0.00 37.48 4.16
620 621 2.047061 GGCCAGGTATGAGATACACCA 58.953 52.381 0.00 0.00 37.48 4.17
621 622 2.438021 GGCCAGGTATGAGATACACCAA 59.562 50.000 0.00 0.00 37.48 3.67
622 623 3.495100 GGCCAGGTATGAGATACACCAAG 60.495 52.174 0.00 0.00 37.48 3.61
623 624 3.495100 GCCAGGTATGAGATACACCAAGG 60.495 52.174 0.00 0.00 37.48 3.61
624 625 3.967326 CCAGGTATGAGATACACCAAGGA 59.033 47.826 0.00 0.00 37.48 3.36
625 626 4.408921 CCAGGTATGAGATACACCAAGGAA 59.591 45.833 0.00 0.00 37.48 3.36
626 627 5.104527 CCAGGTATGAGATACACCAAGGAAA 60.105 44.000 0.00 0.00 37.48 3.13
627 628 6.414732 CAGGTATGAGATACACCAAGGAAAA 58.585 40.000 0.00 0.00 37.48 2.29
628 629 6.884295 CAGGTATGAGATACACCAAGGAAAAA 59.116 38.462 0.00 0.00 37.48 1.94
652 653 7.661127 AAAACTCCAACAAAACCAACTAAAC 57.339 32.000 0.00 0.00 0.00 2.01
663 664 5.479716 AACCAACTAAACAGACTCAAACG 57.520 39.130 0.00 0.00 0.00 3.60
697 698 1.586028 CCATTGGTTGTTCCCGCTG 59.414 57.895 0.00 0.00 34.77 5.18
751 755 6.583806 CACAGCCTTTGATTTGTTGATTAGAC 59.416 38.462 0.00 0.00 0.00 2.59
752 756 6.491403 ACAGCCTTTGATTTGTTGATTAGACT 59.509 34.615 0.00 0.00 0.00 3.24
753 757 7.665559 ACAGCCTTTGATTTGTTGATTAGACTA 59.334 33.333 0.00 0.00 0.00 2.59
778 782 0.604243 ATAGCGCCAACCACGTCAAA 60.604 50.000 2.29 0.00 0.00 2.69
779 783 0.814410 TAGCGCCAACCACGTCAAAA 60.814 50.000 2.29 0.00 0.00 2.44
780 784 1.226717 GCGCCAACCACGTCAAAAA 60.227 52.632 0.00 0.00 0.00 1.94
837 841 5.127682 GGATTGGATTAGAAATTGTGCCTGT 59.872 40.000 0.00 0.00 0.00 4.00
1347 1440 3.858868 GAGCTTGGCCGTCGTGACA 62.859 63.158 0.00 0.00 0.00 3.58
1685 1856 1.642952 CTTCTCCCAAGCTCTTGCGC 61.643 60.000 0.00 0.00 45.42 6.09
1757 1928 1.436600 CAGACGCAGCTTCTCACAAT 58.563 50.000 0.00 0.00 0.00 2.71
1784 1955 3.709633 TGGCTCATCTGCGCTGGT 61.710 61.111 14.70 3.90 0.00 4.00
1814 2105 2.479820 ATCCAGCAGAAGCAGCAGCA 62.480 55.000 3.17 0.00 45.49 4.41
1817 2108 3.362797 GCAGAAGCAGCAGCAGCA 61.363 61.111 12.92 0.00 45.49 4.41
2083 2417 2.231215 ATCGTGCTAGCCATCAGAAC 57.769 50.000 13.29 0.19 0.00 3.01
2135 2471 2.191128 AGGTGTGAATTGGTCTCTGC 57.809 50.000 0.00 0.00 0.00 4.26
2147 2507 4.406648 TGGTCTCTGCAATCGAATGTAT 57.593 40.909 1.83 0.00 0.00 2.29
2273 2718 0.870393 CATTTCTCTGCACACGCACT 59.130 50.000 0.00 0.00 45.36 4.40
2589 3137 6.959639 ATGTGAAACTATCAAAGTGTTGGT 57.040 33.333 0.00 0.00 40.50 3.67
2698 3247 2.305607 GGTGTCATGTAGGGGGCCA 61.306 63.158 4.39 0.00 0.00 5.36
2738 3287 4.469657 TCCTTAGCACTTGTTCCATTTGT 58.530 39.130 0.00 0.00 0.00 2.83
2745 3294 4.622740 GCACTTGTTCCATTTGTATGCTTC 59.377 41.667 0.00 0.00 0.00 3.86
2755 3304 4.811555 TTTGTATGCTTCGGTGATATGC 57.188 40.909 0.00 0.00 0.00 3.14
2828 3382 9.533253 CTCCTTCAAATCTGTTTGTTTTTATGT 57.467 29.630 1.38 0.00 44.03 2.29
2907 3461 5.768164 GGTTCAGGGTTTCAGATCTTTTGTA 59.232 40.000 0.00 0.00 0.00 2.41
2989 3549 3.648339 TTTTGGTCTCTGCTGCATTTC 57.352 42.857 1.31 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.821366 CTAGCAGCCCAAGCACGG 60.821 66.667 0.00 0.00 43.56 4.94
15 16 3.503363 GCTAGCAGCCCAAGCACG 61.503 66.667 10.63 0.00 43.56 5.34
28 29 4.880537 CCCGCGTGCTCAGGCTAG 62.881 72.222 4.92 4.32 39.80 3.42
82 83 9.822727 TGTTGGGTCATATAGAGATGTATAGAA 57.177 33.333 0.00 0.00 0.00 2.10
83 84 9.467796 CTGTTGGGTCATATAGAGATGTATAGA 57.532 37.037 0.00 0.00 0.00 1.98
84 85 8.690884 CCTGTTGGGTCATATAGAGATGTATAG 58.309 40.741 0.00 0.00 0.00 1.31
85 86 8.595362 CCTGTTGGGTCATATAGAGATGTATA 57.405 38.462 0.00 0.00 0.00 1.47
86 87 7.487822 CCTGTTGGGTCATATAGAGATGTAT 57.512 40.000 0.00 0.00 0.00 2.29
87 88 6.918067 CCTGTTGGGTCATATAGAGATGTA 57.082 41.667 0.00 0.00 0.00 2.29
88 89 5.815233 CCTGTTGGGTCATATAGAGATGT 57.185 43.478 0.00 0.00 0.00 3.06
102 103 6.844097 TTTAGCCTATTTTTACCTGTTGGG 57.156 37.500 0.00 0.00 41.89 4.12
130 131 1.594862 CTGCTATTTGACGCACTAGGC 59.405 52.381 0.00 0.00 39.90 3.93
131 132 2.860735 GTCTGCTATTTGACGCACTAGG 59.139 50.000 0.00 0.00 31.95 3.02
132 133 2.531912 CGTCTGCTATTTGACGCACTAG 59.468 50.000 2.69 0.00 46.94 2.57
133 134 2.526077 CGTCTGCTATTTGACGCACTA 58.474 47.619 2.69 0.00 46.94 2.74
134 135 1.350193 CGTCTGCTATTTGACGCACT 58.650 50.000 2.69 0.00 46.94 4.40
135 136 3.858040 CGTCTGCTATTTGACGCAC 57.142 52.632 2.69 0.00 46.94 5.34
139 140 4.174009 TGCTAGTTCGTCTGCTATTTGAC 58.826 43.478 0.00 0.00 0.00 3.18
140 141 4.424626 CTGCTAGTTCGTCTGCTATTTGA 58.575 43.478 0.00 0.00 0.00 2.69
141 142 3.553511 CCTGCTAGTTCGTCTGCTATTTG 59.446 47.826 0.00 0.00 0.00 2.32
142 143 3.195825 ACCTGCTAGTTCGTCTGCTATTT 59.804 43.478 0.00 0.00 0.00 1.40
143 144 2.761208 ACCTGCTAGTTCGTCTGCTATT 59.239 45.455 0.00 0.00 0.00 1.73
144 145 2.359531 GACCTGCTAGTTCGTCTGCTAT 59.640 50.000 0.00 0.00 0.00 2.97
145 146 1.743958 GACCTGCTAGTTCGTCTGCTA 59.256 52.381 0.00 0.00 0.00 3.49
146 147 0.528470 GACCTGCTAGTTCGTCTGCT 59.472 55.000 0.00 0.00 0.00 4.24
147 148 0.528470 AGACCTGCTAGTTCGTCTGC 59.472 55.000 6.86 0.00 34.35 4.26
148 149 2.270275 CAGACCTGCTAGTTCGTCTG 57.730 55.000 15.91 15.91 44.38 3.51
149 150 1.178276 CCAGACCTGCTAGTTCGTCT 58.822 55.000 0.00 0.00 36.00 4.18
150 151 0.458716 GCCAGACCTGCTAGTTCGTC 60.459 60.000 0.00 0.00 0.00 4.20
151 152 1.592223 GCCAGACCTGCTAGTTCGT 59.408 57.895 0.00 0.00 0.00 3.85
152 153 1.517257 CGCCAGACCTGCTAGTTCG 60.517 63.158 0.00 0.00 0.00 3.95
153 154 0.737715 CACGCCAGACCTGCTAGTTC 60.738 60.000 0.00 0.00 0.00 3.01
154 155 1.185618 TCACGCCAGACCTGCTAGTT 61.186 55.000 0.00 0.00 0.00 2.24
155 156 1.599606 CTCACGCCAGACCTGCTAGT 61.600 60.000 0.00 0.00 0.00 2.57
156 157 1.140589 CTCACGCCAGACCTGCTAG 59.859 63.158 0.00 0.00 0.00 3.42
157 158 2.351244 CCTCACGCCAGACCTGCTA 61.351 63.158 0.00 0.00 0.00 3.49
158 159 3.699894 CCTCACGCCAGACCTGCT 61.700 66.667 0.00 0.00 0.00 4.24
159 160 4.767255 CCCTCACGCCAGACCTGC 62.767 72.222 0.00 0.00 0.00 4.85
160 161 3.314331 ACCCTCACGCCAGACCTG 61.314 66.667 0.00 0.00 0.00 4.00
161 162 3.314331 CACCCTCACGCCAGACCT 61.314 66.667 0.00 0.00 0.00 3.85
162 163 4.394712 CCACCCTCACGCCAGACC 62.395 72.222 0.00 0.00 0.00 3.85
163 164 4.394712 CCCACCCTCACGCCAGAC 62.395 72.222 0.00 0.00 0.00 3.51
178 179 0.543646 TCTACTAATAGGGGCGGCCC 60.544 60.000 38.87 38.87 44.51 5.80
179 180 1.207329 CATCTACTAATAGGGGCGGCC 59.793 57.143 22.00 22.00 0.00 6.13
180 181 1.207329 CCATCTACTAATAGGGGCGGC 59.793 57.143 0.00 0.00 0.00 6.53
181 182 1.207329 GCCATCTACTAATAGGGGCGG 59.793 57.143 0.26 0.00 38.59 6.13
182 183 1.207329 GGCCATCTACTAATAGGGGCG 59.793 57.143 0.00 0.00 44.13 6.13
183 184 1.207329 CGGCCATCTACTAATAGGGGC 59.793 57.143 2.24 6.35 43.26 5.80
184 185 2.233922 CACGGCCATCTACTAATAGGGG 59.766 54.545 2.24 0.00 0.00 4.79
185 186 2.353803 GCACGGCCATCTACTAATAGGG 60.354 54.545 2.24 0.00 0.00 3.53
186 187 2.960819 GCACGGCCATCTACTAATAGG 58.039 52.381 2.24 0.00 0.00 2.57
232 233 2.278989 TAATAGCCGCGTCGTGCC 60.279 61.111 4.92 0.00 42.08 5.01
233 234 1.538117 GACTAATAGCCGCGTCGTGC 61.538 60.000 4.92 0.00 41.47 5.34
234 235 1.260198 CGACTAATAGCCGCGTCGTG 61.260 60.000 4.92 0.00 42.89 4.35
235 236 1.010350 CGACTAATAGCCGCGTCGT 60.010 57.895 4.92 0.00 42.89 4.34
236 237 3.811328 CGACTAATAGCCGCGTCG 58.189 61.111 4.92 0.43 42.39 5.12
237 238 1.538117 GCACGACTAATAGCCGCGTC 61.538 60.000 4.92 0.00 32.27 5.19
238 239 1.588139 GCACGACTAATAGCCGCGT 60.588 57.895 4.92 0.00 35.33 6.01
239 240 2.300787 GGCACGACTAATAGCCGCG 61.301 63.158 0.00 0.00 37.41 6.46
240 241 3.626472 GGCACGACTAATAGCCGC 58.374 61.111 0.00 0.00 37.41 6.53
274 275 0.970640 TAGTCTAAACGTGCCTGGCA 59.029 50.000 19.30 19.30 35.60 4.92
275 276 1.067071 AGTAGTCTAAACGTGCCTGGC 60.067 52.381 12.87 12.87 0.00 4.85
276 277 2.230508 TGAGTAGTCTAAACGTGCCTGG 59.769 50.000 0.00 0.00 0.00 4.45
277 278 3.243336 GTGAGTAGTCTAAACGTGCCTG 58.757 50.000 0.00 0.00 0.00 4.85
278 279 2.889045 TGTGAGTAGTCTAAACGTGCCT 59.111 45.455 0.00 0.00 0.00 4.75
279 280 3.293311 TGTGAGTAGTCTAAACGTGCC 57.707 47.619 0.00 0.00 0.00 5.01
280 281 4.091509 CCATTGTGAGTAGTCTAAACGTGC 59.908 45.833 0.00 0.00 0.00 5.34
281 282 4.625742 CCCATTGTGAGTAGTCTAAACGTG 59.374 45.833 0.00 0.00 0.00 4.49
282 283 4.525487 TCCCATTGTGAGTAGTCTAAACGT 59.475 41.667 0.00 0.00 0.00 3.99
283 284 5.068234 TCCCATTGTGAGTAGTCTAAACG 57.932 43.478 0.00 0.00 0.00 3.60
284 285 6.038997 ACTCCCATTGTGAGTAGTCTAAAC 57.961 41.667 0.00 0.00 41.17 2.01
285 286 7.233962 TGTTACTCCCATTGTGAGTAGTCTAAA 59.766 37.037 8.66 0.00 43.94 1.85
286 287 6.722590 TGTTACTCCCATTGTGAGTAGTCTAA 59.277 38.462 8.66 0.00 43.94 2.10
287 288 6.152323 GTGTTACTCCCATTGTGAGTAGTCTA 59.848 42.308 8.66 0.00 43.94 2.59
288 289 5.047235 GTGTTACTCCCATTGTGAGTAGTCT 60.047 44.000 8.66 0.00 43.94 3.24
289 290 5.169295 GTGTTACTCCCATTGTGAGTAGTC 58.831 45.833 8.66 7.49 43.94 2.59
290 291 4.591498 TGTGTTACTCCCATTGTGAGTAGT 59.409 41.667 8.66 0.00 43.94 2.73
291 292 5.147330 TGTGTTACTCCCATTGTGAGTAG 57.853 43.478 8.66 0.00 43.94 2.57
292 293 4.020573 CCTGTGTTACTCCCATTGTGAGTA 60.021 45.833 5.06 5.06 42.78 2.59
293 294 3.244561 CCTGTGTTACTCCCATTGTGAGT 60.245 47.826 6.99 6.99 44.85 3.41
294 295 3.244561 ACCTGTGTTACTCCCATTGTGAG 60.245 47.826 0.00 0.00 35.92 3.51
295 296 2.708861 ACCTGTGTTACTCCCATTGTGA 59.291 45.455 0.00 0.00 0.00 3.58
296 297 3.140325 ACCTGTGTTACTCCCATTGTG 57.860 47.619 0.00 0.00 0.00 3.33
297 298 3.908103 ACTACCTGTGTTACTCCCATTGT 59.092 43.478 0.00 0.00 0.00 2.71
298 299 4.553330 ACTACCTGTGTTACTCCCATTG 57.447 45.455 0.00 0.00 0.00 2.82
299 300 5.544948 TGTTACTACCTGTGTTACTCCCATT 59.455 40.000 0.00 0.00 0.00 3.16
300 301 5.088730 TGTTACTACCTGTGTTACTCCCAT 58.911 41.667 0.00 0.00 0.00 4.00
301 302 4.482030 TGTTACTACCTGTGTTACTCCCA 58.518 43.478 0.00 0.00 0.00 4.37
302 303 5.186409 TGATGTTACTACCTGTGTTACTCCC 59.814 44.000 0.00 0.00 0.00 4.30
303 304 6.098017 GTGATGTTACTACCTGTGTTACTCC 58.902 44.000 0.00 0.00 0.00 3.85
304 305 6.585322 GTGTGATGTTACTACCTGTGTTACTC 59.415 42.308 0.00 0.00 0.00 2.59
305 306 6.041182 TGTGTGATGTTACTACCTGTGTTACT 59.959 38.462 0.00 0.00 0.00 2.24
306 307 6.218019 TGTGTGATGTTACTACCTGTGTTAC 58.782 40.000 0.00 0.00 0.00 2.50
307 308 6.408107 TGTGTGATGTTACTACCTGTGTTA 57.592 37.500 0.00 0.00 0.00 2.41
308 309 5.284861 TGTGTGATGTTACTACCTGTGTT 57.715 39.130 0.00 0.00 0.00 3.32
309 310 4.948341 TGTGTGATGTTACTACCTGTGT 57.052 40.909 0.00 0.00 0.00 3.72
310 311 7.492524 AGATATGTGTGATGTTACTACCTGTG 58.507 38.462 0.00 0.00 0.00 3.66
311 312 7.661536 AGATATGTGTGATGTTACTACCTGT 57.338 36.000 0.00 0.00 0.00 4.00
312 313 9.067986 TCTAGATATGTGTGATGTTACTACCTG 57.932 37.037 0.00 0.00 0.00 4.00
313 314 9.815306 ATCTAGATATGTGTGATGTTACTACCT 57.185 33.333 2.53 0.00 0.00 3.08
345 346 9.590451 CTTCATTTATTACTTGCCACATCATTT 57.410 29.630 0.00 0.00 0.00 2.32
346 347 8.970020 TCTTCATTTATTACTTGCCACATCATT 58.030 29.630 0.00 0.00 0.00 2.57
347 348 8.523915 TCTTCATTTATTACTTGCCACATCAT 57.476 30.769 0.00 0.00 0.00 2.45
348 349 7.936496 TCTTCATTTATTACTTGCCACATCA 57.064 32.000 0.00 0.00 0.00 3.07
349 350 9.294030 CTTTCTTCATTTATTACTTGCCACATC 57.706 33.333 0.00 0.00 0.00 3.06
350 351 9.023962 TCTTTCTTCATTTATTACTTGCCACAT 57.976 29.630 0.00 0.00 0.00 3.21
351 352 8.402798 TCTTTCTTCATTTATTACTTGCCACA 57.597 30.769 0.00 0.00 0.00 4.17
352 353 8.515414 ACTCTTTCTTCATTTATTACTTGCCAC 58.485 33.333 0.00 0.00 0.00 5.01
353 354 8.514594 CACTCTTTCTTCATTTATTACTTGCCA 58.485 33.333 0.00 0.00 0.00 4.92
354 355 7.970614 CCACTCTTTCTTCATTTATTACTTGCC 59.029 37.037 0.00 0.00 0.00 4.52
355 356 8.730680 TCCACTCTTTCTTCATTTATTACTTGC 58.269 33.333 0.00 0.00 0.00 4.01
361 362 8.579863 CCACTTTCCACTCTTTCTTCATTTATT 58.420 33.333 0.00 0.00 0.00 1.40
362 363 7.725844 ACCACTTTCCACTCTTTCTTCATTTAT 59.274 33.333 0.00 0.00 0.00 1.40
363 364 7.060421 ACCACTTTCCACTCTTTCTTCATTTA 58.940 34.615 0.00 0.00 0.00 1.40
364 365 5.893824 ACCACTTTCCACTCTTTCTTCATTT 59.106 36.000 0.00 0.00 0.00 2.32
365 366 5.449553 ACCACTTTCCACTCTTTCTTCATT 58.550 37.500 0.00 0.00 0.00 2.57
366 367 5.053978 ACCACTTTCCACTCTTTCTTCAT 57.946 39.130 0.00 0.00 0.00 2.57
367 368 4.503714 ACCACTTTCCACTCTTTCTTCA 57.496 40.909 0.00 0.00 0.00 3.02
368 369 5.820947 TGTTACCACTTTCCACTCTTTCTTC 59.179 40.000 0.00 0.00 0.00 2.87
369 370 5.751586 TGTTACCACTTTCCACTCTTTCTT 58.248 37.500 0.00 0.00 0.00 2.52
370 371 5.367945 TGTTACCACTTTCCACTCTTTCT 57.632 39.130 0.00 0.00 0.00 2.52
371 372 6.128254 GCTATGTTACCACTTTCCACTCTTTC 60.128 42.308 0.00 0.00 0.00 2.62
372 373 5.705905 GCTATGTTACCACTTTCCACTCTTT 59.294 40.000 0.00 0.00 0.00 2.52
373 374 5.013183 AGCTATGTTACCACTTTCCACTCTT 59.987 40.000 0.00 0.00 0.00 2.85
374 375 4.532521 AGCTATGTTACCACTTTCCACTCT 59.467 41.667 0.00 0.00 0.00 3.24
375 376 4.833390 AGCTATGTTACCACTTTCCACTC 58.167 43.478 0.00 0.00 0.00 3.51
376 377 4.910458 AGCTATGTTACCACTTTCCACT 57.090 40.909 0.00 0.00 0.00 4.00
377 378 5.731591 ACTAGCTATGTTACCACTTTCCAC 58.268 41.667 0.00 0.00 0.00 4.02
378 379 6.368779 AACTAGCTATGTTACCACTTTCCA 57.631 37.500 0.00 0.00 0.00 3.53
379 380 7.554211 AGTAACTAGCTATGTTACCACTTTCC 58.446 38.462 25.92 11.54 46.31 3.13
380 381 9.513727 GTAGTAACTAGCTATGTTACCACTTTC 57.486 37.037 25.92 12.94 46.31 2.62
381 382 9.252635 AGTAGTAACTAGCTATGTTACCACTTT 57.747 33.333 24.23 16.61 44.23 2.66
382 383 8.820153 AGTAGTAACTAGCTATGTTACCACTT 57.180 34.615 24.23 16.82 44.23 3.16
383 384 9.558396 CTAGTAGTAACTAGCTATGTTACCACT 57.442 37.037 27.98 27.98 46.53 4.00
405 406 9.902684 ATGTGTGATGTTACTACTACTACTAGT 57.097 33.333 0.00 0.00 37.04 2.57
412 413 9.464714 CCTTGATATGTGTGATGTTACTACTAC 57.535 37.037 0.00 0.00 0.00 2.73
413 414 8.141909 GCCTTGATATGTGTGATGTTACTACTA 58.858 37.037 0.00 0.00 0.00 1.82
414 415 6.986817 GCCTTGATATGTGTGATGTTACTACT 59.013 38.462 0.00 0.00 0.00 2.57
415 416 6.761242 TGCCTTGATATGTGTGATGTTACTAC 59.239 38.462 0.00 0.00 0.00 2.73
416 417 6.883744 TGCCTTGATATGTGTGATGTTACTA 58.116 36.000 0.00 0.00 0.00 1.82
417 418 5.744171 TGCCTTGATATGTGTGATGTTACT 58.256 37.500 0.00 0.00 0.00 2.24
418 419 6.316140 TCTTGCCTTGATATGTGTGATGTTAC 59.684 38.462 0.00 0.00 0.00 2.50
419 420 6.413892 TCTTGCCTTGATATGTGTGATGTTA 58.586 36.000 0.00 0.00 0.00 2.41
420 421 5.255687 TCTTGCCTTGATATGTGTGATGTT 58.744 37.500 0.00 0.00 0.00 2.71
421 422 4.847198 TCTTGCCTTGATATGTGTGATGT 58.153 39.130 0.00 0.00 0.00 3.06
422 423 5.298527 ACATCTTGCCTTGATATGTGTGATG 59.701 40.000 0.00 0.00 35.23 3.07
423 424 5.298527 CACATCTTGCCTTGATATGTGTGAT 59.701 40.000 0.00 0.00 41.46 3.06
424 425 4.637091 CACATCTTGCCTTGATATGTGTGA 59.363 41.667 0.00 0.00 41.46 3.58
425 426 4.916870 CACATCTTGCCTTGATATGTGTG 58.083 43.478 0.00 0.00 41.46 3.82
428 429 5.108187 AGACACATCTTGCCTTGATATGT 57.892 39.130 0.00 0.00 34.70 2.29
429 430 7.064371 GCTATAGACACATCTTGCCTTGATATG 59.936 40.741 3.21 0.00 36.29 1.78
430 431 7.102346 GCTATAGACACATCTTGCCTTGATAT 58.898 38.462 3.21 0.00 36.29 1.63
431 432 6.459066 GCTATAGACACATCTTGCCTTGATA 58.541 40.000 3.21 0.00 36.29 2.15
432 433 5.303971 GCTATAGACACATCTTGCCTTGAT 58.696 41.667 3.21 0.00 36.29 2.57
433 434 4.443457 GGCTATAGACACATCTTGCCTTGA 60.443 45.833 3.21 0.00 39.50 3.02
434 435 3.812053 GGCTATAGACACATCTTGCCTTG 59.188 47.826 3.21 0.00 39.50 3.61
435 436 3.713764 AGGCTATAGACACATCTTGCCTT 59.286 43.478 8.68 0.00 45.01 4.35
436 437 3.312890 AGGCTATAGACACATCTTGCCT 58.687 45.455 8.68 0.00 43.78 4.75
437 438 3.760580 AGGCTATAGACACATCTTGCC 57.239 47.619 8.68 0.00 41.26 4.52
438 439 8.833231 TTTATTAGGCTATAGACACATCTTGC 57.167 34.615 8.68 0.00 36.29 4.01
444 445 9.764363 CACTTCATTTATTAGGCTATAGACACA 57.236 33.333 8.68 0.00 0.00 3.72
445 446 8.713271 GCACTTCATTTATTAGGCTATAGACAC 58.287 37.037 8.68 0.00 0.00 3.67
446 447 8.651389 AGCACTTCATTTATTAGGCTATAGACA 58.349 33.333 8.68 0.00 0.00 3.41
447 448 9.495572 AAGCACTTCATTTATTAGGCTATAGAC 57.504 33.333 3.21 0.00 0.00 2.59
448 449 9.712305 GAAGCACTTCATTTATTAGGCTATAGA 57.288 33.333 3.21 0.00 39.31 1.98
449 450 9.494271 TGAAGCACTTCATTTATTAGGCTATAG 57.506 33.333 8.99 0.00 43.90 1.31
477 478 5.121105 GGGGAGTAACATATGTGTGGTAAC 58.879 45.833 9.63 1.91 38.92 2.50
478 479 4.783763 TGGGGAGTAACATATGTGTGGTAA 59.216 41.667 9.63 0.00 38.92 2.85
479 480 4.162698 GTGGGGAGTAACATATGTGTGGTA 59.837 45.833 9.63 0.00 38.92 3.25
480 481 3.054655 GTGGGGAGTAACATATGTGTGGT 60.055 47.826 9.63 0.00 38.92 4.16
481 482 3.199946 AGTGGGGAGTAACATATGTGTGG 59.800 47.826 9.63 0.00 38.92 4.17
482 483 4.191544 CAGTGGGGAGTAACATATGTGTG 58.808 47.826 9.63 0.00 38.92 3.82
483 484 3.844211 ACAGTGGGGAGTAACATATGTGT 59.156 43.478 9.63 2.63 41.28 3.72
484 485 4.487714 ACAGTGGGGAGTAACATATGTG 57.512 45.455 9.63 0.00 0.00 3.21
485 486 5.525484 TCTACAGTGGGGAGTAACATATGT 58.475 41.667 1.41 1.41 0.00 2.29
486 487 5.011125 CCTCTACAGTGGGGAGTAACATATG 59.989 48.000 0.00 0.00 0.00 1.78
487 488 5.148502 CCTCTACAGTGGGGAGTAACATAT 58.851 45.833 11.75 0.00 0.00 1.78
488 489 4.016851 ACCTCTACAGTGGGGAGTAACATA 60.017 45.833 11.75 0.00 33.22 2.29
489 490 3.246021 ACCTCTACAGTGGGGAGTAACAT 60.246 47.826 11.75 0.00 33.22 2.71
490 491 2.111255 ACCTCTACAGTGGGGAGTAACA 59.889 50.000 11.75 0.00 33.22 2.41
491 492 2.817665 ACCTCTACAGTGGGGAGTAAC 58.182 52.381 11.75 0.00 33.22 2.50
492 493 3.595138 ACTACCTCTACAGTGGGGAGTAA 59.405 47.826 0.00 0.00 31.54 2.24
493 494 3.196300 ACTACCTCTACAGTGGGGAGTA 58.804 50.000 0.00 0.00 31.54 2.59
494 495 2.001558 ACTACCTCTACAGTGGGGAGT 58.998 52.381 11.75 4.90 33.22 3.85
495 496 2.830651 ACTACCTCTACAGTGGGGAG 57.169 55.000 0.00 1.36 33.22 4.30
496 497 3.334581 TGTTACTACCTCTACAGTGGGGA 59.665 47.826 0.00 0.00 33.22 4.81
497 498 3.705051 TGTTACTACCTCTACAGTGGGG 58.295 50.000 0.00 0.00 33.22 4.96
498 499 6.363065 TCTATGTTACTACCTCTACAGTGGG 58.637 44.000 0.00 0.00 33.22 4.61
499 500 7.055378 ACTCTATGTTACTACCTCTACAGTGG 58.945 42.308 0.00 0.00 34.99 4.00
500 501 9.263538 CTACTCTATGTTACTACCTCTACAGTG 57.736 40.741 0.00 0.00 0.00 3.66
501 502 8.991275 ACTACTCTATGTTACTACCTCTACAGT 58.009 37.037 0.00 0.00 0.00 3.55
508 509 9.270640 CGATGTTACTACTCTATGTTACTACCT 57.729 37.037 0.00 0.00 0.00 3.08
509 510 9.265901 TCGATGTTACTACTCTATGTTACTACC 57.734 37.037 0.00 0.00 0.00 3.18
511 512 9.822185 TGTCGATGTTACTACTCTATGTTACTA 57.178 33.333 0.00 0.00 0.00 1.82
512 513 8.728337 TGTCGATGTTACTACTCTATGTTACT 57.272 34.615 0.00 0.00 0.00 2.24
513 514 8.824781 TCTGTCGATGTTACTACTCTATGTTAC 58.175 37.037 0.00 0.00 0.00 2.50
514 515 8.953368 TCTGTCGATGTTACTACTCTATGTTA 57.047 34.615 0.00 0.00 0.00 2.41
515 516 7.012515 CCTCTGTCGATGTTACTACTCTATGTT 59.987 40.741 0.00 0.00 0.00 2.71
516 517 6.483974 CCTCTGTCGATGTTACTACTCTATGT 59.516 42.308 0.00 0.00 0.00 2.29
517 518 6.483974 ACCTCTGTCGATGTTACTACTCTATG 59.516 42.308 0.00 0.00 0.00 2.23
518 519 6.593807 ACCTCTGTCGATGTTACTACTCTAT 58.406 40.000 0.00 0.00 0.00 1.98
519 520 5.987098 ACCTCTGTCGATGTTACTACTCTA 58.013 41.667 0.00 0.00 0.00 2.43
520 521 4.846040 ACCTCTGTCGATGTTACTACTCT 58.154 43.478 0.00 0.00 0.00 3.24
521 522 5.816777 ACTACCTCTGTCGATGTTACTACTC 59.183 44.000 0.00 0.00 0.00 2.59
522 523 5.743117 ACTACCTCTGTCGATGTTACTACT 58.257 41.667 0.00 0.00 0.00 2.57
523 524 7.065085 TGTTACTACCTCTGTCGATGTTACTAC 59.935 40.741 0.00 0.00 0.00 2.73
524 525 7.105588 TGTTACTACCTCTGTCGATGTTACTA 58.894 38.462 0.00 0.00 0.00 1.82
525 526 5.942236 TGTTACTACCTCTGTCGATGTTACT 59.058 40.000 0.00 0.00 0.00 2.24
526 527 6.187125 TGTTACTACCTCTGTCGATGTTAC 57.813 41.667 0.00 0.00 0.00 2.50
527 528 6.376299 ACATGTTACTACCTCTGTCGATGTTA 59.624 38.462 0.00 0.00 0.00 2.41
528 529 5.185249 ACATGTTACTACCTCTGTCGATGTT 59.815 40.000 0.00 0.00 0.00 2.71
529 530 4.705507 ACATGTTACTACCTCTGTCGATGT 59.294 41.667 0.00 0.00 0.00 3.06
530 531 5.250235 ACATGTTACTACCTCTGTCGATG 57.750 43.478 0.00 0.00 0.00 3.84
531 532 5.502153 GACATGTTACTACCTCTGTCGAT 57.498 43.478 0.00 0.00 0.00 3.59
532 533 4.959596 GACATGTTACTACCTCTGTCGA 57.040 45.455 0.00 0.00 0.00 4.20
533 534 3.681855 CGACATGTTACTACCTCTGTCG 58.318 50.000 0.00 8.27 46.40 4.35
534 535 4.959596 TCGACATGTTACTACCTCTGTC 57.040 45.455 0.00 0.00 0.00 3.51
535 536 4.705507 ACATCGACATGTTACTACCTCTGT 59.294 41.667 0.00 0.00 40.66 3.41
536 537 5.250235 ACATCGACATGTTACTACCTCTG 57.750 43.478 0.00 0.00 40.66 3.35
547 548 7.569639 ACATAGAGTAGTAACATCGACATGT 57.430 36.000 0.00 0.00 45.89 3.21
548 549 9.383462 GTAACATAGAGTAGTAACATCGACATG 57.617 37.037 0.00 0.00 35.92 3.21
549 550 9.339850 AGTAACATAGAGTAGTAACATCGACAT 57.660 33.333 0.00 0.00 0.00 3.06
550 551 8.728337 AGTAACATAGAGTAGTAACATCGACA 57.272 34.615 0.00 0.00 0.00 4.35
552 553 9.265901 GGTAGTAACATAGAGTAGTAACATCGA 57.734 37.037 0.00 0.00 0.00 3.59
553 554 8.502387 GGGTAGTAACATAGAGTAGTAACATCG 58.498 40.741 0.00 0.00 0.00 3.84
554 555 9.347240 TGGGTAGTAACATAGAGTAGTAACATC 57.653 37.037 0.00 0.00 0.00 3.06
555 556 9.878737 ATGGGTAGTAACATAGAGTAGTAACAT 57.121 33.333 0.00 0.00 0.00 2.71
556 557 9.705103 AATGGGTAGTAACATAGAGTAGTAACA 57.295 33.333 0.00 0.00 0.00 2.41
557 558 9.962783 CAATGGGTAGTAACATAGAGTAGTAAC 57.037 37.037 0.00 0.00 0.00 2.50
558 559 9.705103 ACAATGGGTAGTAACATAGAGTAGTAA 57.295 33.333 0.00 0.00 0.00 2.24
559 560 9.128404 CACAATGGGTAGTAACATAGAGTAGTA 57.872 37.037 0.00 0.00 0.00 1.82
560 561 7.618512 ACACAATGGGTAGTAACATAGAGTAGT 59.381 37.037 0.00 0.00 0.00 2.73
561 562 8.008513 ACACAATGGGTAGTAACATAGAGTAG 57.991 38.462 0.00 0.00 0.00 2.57
562 563 7.837689 AGACACAATGGGTAGTAACATAGAGTA 59.162 37.037 0.00 0.00 0.00 2.59
563 564 6.668283 AGACACAATGGGTAGTAACATAGAGT 59.332 38.462 0.00 0.00 0.00 3.24
564 565 7.113658 AGACACAATGGGTAGTAACATAGAG 57.886 40.000 0.00 0.00 0.00 2.43
565 566 7.837689 ACTAGACACAATGGGTAGTAACATAGA 59.162 37.037 0.00 0.00 0.00 1.98
566 567 8.008513 ACTAGACACAATGGGTAGTAACATAG 57.991 38.462 0.00 0.00 0.00 2.23
567 568 7.837689 AGACTAGACACAATGGGTAGTAACATA 59.162 37.037 0.00 0.00 0.00 2.29
568 569 6.668283 AGACTAGACACAATGGGTAGTAACAT 59.332 38.462 0.00 0.00 0.00 2.71
569 570 6.014647 AGACTAGACACAATGGGTAGTAACA 58.985 40.000 0.00 0.00 0.00 2.41
570 571 6.527057 AGACTAGACACAATGGGTAGTAAC 57.473 41.667 0.00 0.00 0.00 2.50
571 572 7.123247 GGTAAGACTAGACACAATGGGTAGTAA 59.877 40.741 0.00 0.00 0.00 2.24
572 573 6.604795 GGTAAGACTAGACACAATGGGTAGTA 59.395 42.308 0.00 0.00 0.00 1.82
573 574 5.421374 GGTAAGACTAGACACAATGGGTAGT 59.579 44.000 0.00 0.00 0.00 2.73
574 575 5.450137 CGGTAAGACTAGACACAATGGGTAG 60.450 48.000 0.00 0.00 0.00 3.18
575 576 4.400251 CGGTAAGACTAGACACAATGGGTA 59.600 45.833 0.00 0.00 0.00 3.69
576 577 3.194968 CGGTAAGACTAGACACAATGGGT 59.805 47.826 0.00 0.00 0.00 4.51
577 578 3.782046 CGGTAAGACTAGACACAATGGG 58.218 50.000 0.00 0.00 0.00 4.00
578 579 3.187700 GCGGTAAGACTAGACACAATGG 58.812 50.000 0.00 0.00 0.00 3.16
579 580 2.852413 CGCGGTAAGACTAGACACAATG 59.148 50.000 0.00 0.00 0.00 2.82
580 581 2.159282 CCGCGGTAAGACTAGACACAAT 60.159 50.000 19.50 0.00 0.00 2.71
581 582 1.200716 CCGCGGTAAGACTAGACACAA 59.799 52.381 19.50 0.00 0.00 3.33
582 583 0.806868 CCGCGGTAAGACTAGACACA 59.193 55.000 19.50 0.00 0.00 3.72
583 584 0.525029 GCCGCGGTAAGACTAGACAC 60.525 60.000 28.70 0.08 0.00 3.67
584 585 1.660560 GGCCGCGGTAAGACTAGACA 61.661 60.000 28.70 0.00 0.00 3.41
585 586 1.065436 GGCCGCGGTAAGACTAGAC 59.935 63.158 28.70 5.15 0.00 2.59
586 587 1.378911 TGGCCGCGGTAAGACTAGA 60.379 57.895 28.70 0.00 0.00 2.43
587 588 1.065928 CTGGCCGCGGTAAGACTAG 59.934 63.158 28.70 12.90 0.00 2.57
588 589 2.420568 CCTGGCCGCGGTAAGACTA 61.421 63.158 28.70 6.28 0.00 2.59
589 590 3.771160 CCTGGCCGCGGTAAGACT 61.771 66.667 28.70 0.00 0.00 3.24
590 591 2.024590 ATACCTGGCCGCGGTAAGAC 62.025 60.000 28.70 9.35 40.19 3.01
591 592 1.759299 ATACCTGGCCGCGGTAAGA 60.759 57.895 28.70 9.84 40.19 2.10
592 593 1.594293 CATACCTGGCCGCGGTAAG 60.594 63.158 28.70 23.01 40.19 2.34
593 594 2.023414 CTCATACCTGGCCGCGGTAA 62.023 60.000 28.70 14.53 40.19 2.85
594 595 2.442458 TCATACCTGGCCGCGGTA 60.442 61.111 28.70 21.84 40.98 4.02
595 596 3.849951 CTCATACCTGGCCGCGGT 61.850 66.667 28.70 19.18 38.55 5.68
596 597 1.532604 TATCTCATACCTGGCCGCGG 61.533 60.000 24.05 24.05 0.00 6.46
597 598 0.388649 GTATCTCATACCTGGCCGCG 60.389 60.000 0.00 0.00 0.00 6.46
598 599 0.679505 TGTATCTCATACCTGGCCGC 59.320 55.000 0.00 0.00 34.86 6.53
599 600 1.000955 GGTGTATCTCATACCTGGCCG 59.999 57.143 0.00 0.00 35.57 6.13
600 601 2.047061 TGGTGTATCTCATACCTGGCC 58.953 52.381 0.00 0.00 39.15 5.36
601 602 3.495100 CCTTGGTGTATCTCATACCTGGC 60.495 52.174 0.00 0.00 39.15 4.85
602 603 3.967326 TCCTTGGTGTATCTCATACCTGG 59.033 47.826 0.00 0.00 39.15 4.45
603 604 5.614324 TTCCTTGGTGTATCTCATACCTG 57.386 43.478 0.00 0.00 39.15 4.00
604 605 6.636454 TTTTCCTTGGTGTATCTCATACCT 57.364 37.500 0.00 0.00 39.15 3.08
627 628 7.715686 TGTTTAGTTGGTTTTGTTGGAGTTTTT 59.284 29.630 0.00 0.00 0.00 1.94
628 629 7.217906 TGTTTAGTTGGTTTTGTTGGAGTTTT 58.782 30.769 0.00 0.00 0.00 2.43
629 630 6.760291 TGTTTAGTTGGTTTTGTTGGAGTTT 58.240 32.000 0.00 0.00 0.00 2.66
630 631 6.209788 TCTGTTTAGTTGGTTTTGTTGGAGTT 59.790 34.615 0.00 0.00 0.00 3.01
631 632 5.712917 TCTGTTTAGTTGGTTTTGTTGGAGT 59.287 36.000 0.00 0.00 0.00 3.85
632 633 6.033966 GTCTGTTTAGTTGGTTTTGTTGGAG 58.966 40.000 0.00 0.00 0.00 3.86
633 634 5.712917 AGTCTGTTTAGTTGGTTTTGTTGGA 59.287 36.000 0.00 0.00 0.00 3.53
634 635 5.961272 AGTCTGTTTAGTTGGTTTTGTTGG 58.039 37.500 0.00 0.00 0.00 3.77
635 636 6.616947 TGAGTCTGTTTAGTTGGTTTTGTTG 58.383 36.000 0.00 0.00 0.00 3.33
636 637 6.827586 TGAGTCTGTTTAGTTGGTTTTGTT 57.172 33.333 0.00 0.00 0.00 2.83
637 638 6.827586 TTGAGTCTGTTTAGTTGGTTTTGT 57.172 33.333 0.00 0.00 0.00 2.83
638 639 6.250527 CGTTTGAGTCTGTTTAGTTGGTTTTG 59.749 38.462 0.00 0.00 0.00 2.44
639 640 6.149807 TCGTTTGAGTCTGTTTAGTTGGTTTT 59.850 34.615 0.00 0.00 0.00 2.43
640 641 5.644636 TCGTTTGAGTCTGTTTAGTTGGTTT 59.355 36.000 0.00 0.00 0.00 3.27
641 642 5.180271 TCGTTTGAGTCTGTTTAGTTGGTT 58.820 37.500 0.00 0.00 0.00 3.67
642 643 4.761975 TCGTTTGAGTCTGTTTAGTTGGT 58.238 39.130 0.00 0.00 0.00 3.67
643 644 5.330271 CTCGTTTGAGTCTGTTTAGTTGG 57.670 43.478 0.00 0.00 37.46 3.77
663 664 2.935201 CAATGGCTGTGCTAGAAGACTC 59.065 50.000 0.00 0.00 0.00 3.36
725 729 5.534207 AATCAACAAATCAAAGGCTGTGA 57.466 34.783 10.37 10.37 0.00 3.58
751 755 3.326747 GTGGTTGGCGCTATTCCTATAG 58.673 50.000 7.64 0.00 37.40 1.31
752 756 2.288579 CGTGGTTGGCGCTATTCCTATA 60.289 50.000 7.64 0.00 0.00 1.31
753 757 1.540363 CGTGGTTGGCGCTATTCCTAT 60.540 52.381 7.64 0.00 0.00 2.57
837 841 0.762418 TTTTCTCCTCACGCTTGGGA 59.238 50.000 0.00 0.00 0.00 4.37
1030 1108 0.036732 TCGAAATCTTGCACCTGCCT 59.963 50.000 0.00 0.00 41.18 4.75
1347 1440 0.189327 GGCAATCCCAATCTCCCCAT 59.811 55.000 0.00 0.00 0.00 4.00
1672 1843 4.112341 GCCAGCGCAAGAGCTTGG 62.112 66.667 11.47 7.83 46.80 3.61
1707 1878 3.853487 TGCTGGATCGGCAGCGAT 61.853 61.111 16.18 0.00 46.60 4.58
1735 1906 1.373873 TGAGAAGCTGCGTCTGCTG 60.374 57.895 22.41 0.00 43.34 4.41
1736 1907 1.373999 GTGAGAAGCTGCGTCTGCT 60.374 57.895 22.41 0.00 43.34 4.24
1737 1908 1.224069 TTGTGAGAAGCTGCGTCTGC 61.224 55.000 22.41 14.55 43.20 4.26
1738 1909 1.392853 GATTGTGAGAAGCTGCGTCTG 59.607 52.381 22.41 0.00 0.00 3.51
1741 1912 0.674895 GGGATTGTGAGAAGCTGCGT 60.675 55.000 0.00 0.00 0.00 5.24
1792 1969 1.449246 GCTGCTTCTGCTGGATCGT 60.449 57.895 0.00 0.00 40.48 3.73
1824 2124 1.402968 CTTATCATGTGTGGCTGGTGC 59.597 52.381 0.00 0.00 38.76 5.01
1825 2125 1.402968 GCTTATCATGTGTGGCTGGTG 59.597 52.381 0.00 0.00 0.00 4.17
1826 2126 1.683011 GGCTTATCATGTGTGGCTGGT 60.683 52.381 0.00 0.00 0.00 4.00
1827 2127 1.027357 GGCTTATCATGTGTGGCTGG 58.973 55.000 0.00 0.00 0.00 4.85
1828 2128 1.027357 GGGCTTATCATGTGTGGCTG 58.973 55.000 0.00 0.00 0.00 4.85
1829 2129 0.106519 GGGGCTTATCATGTGTGGCT 60.107 55.000 0.00 0.00 0.00 4.75
1830 2130 0.106519 AGGGGCTTATCATGTGTGGC 60.107 55.000 0.00 0.00 0.00 5.01
1831 2131 1.683943 CAGGGGCTTATCATGTGTGG 58.316 55.000 0.00 0.00 0.00 4.17
1832 2132 1.027357 GCAGGGGCTTATCATGTGTG 58.973 55.000 0.00 0.00 36.96 3.82
2135 2471 6.421377 TCAGACACCAAATACATTCGATTG 57.579 37.500 5.78 5.78 0.00 2.67
2249 2694 1.609208 GTGTGCAGAGAAATGGGTGT 58.391 50.000 0.00 0.00 0.00 4.16
2273 2718 4.616143 GCGGCAGATCTATCTAAATCGACA 60.616 45.833 0.00 0.00 34.85 4.35
2439 2918 2.797792 CGTCCATCTCAAGCTACTCTGC 60.798 54.545 0.00 0.00 0.00 4.26
2589 3137 2.106338 TCACAATCCAAGGCAAGACTCA 59.894 45.455 0.00 0.00 0.00 3.41
2698 3247 7.615365 TGCTAAGGATATGAATGAACAACCTTT 59.385 33.333 0.00 0.00 35.47 3.11
2738 3287 2.632512 TGAGGCATATCACCGAAGCATA 59.367 45.455 0.00 0.00 0.00 3.14
2745 3294 0.940126 GCAACTGAGGCATATCACCG 59.060 55.000 0.00 0.00 0.00 4.94
2755 3304 3.508793 AGACATGGAATTTGCAACTGAGG 59.491 43.478 0.00 0.00 0.00 3.86
2884 3438 5.774498 ACAAAAGATCTGAAACCCTGAAC 57.226 39.130 0.00 0.00 0.00 3.18
2887 3441 5.945784 TCCATACAAAAGATCTGAAACCCTG 59.054 40.000 0.00 0.00 0.00 4.45
2907 3461 5.363562 TTTGATATGAGACAGCTGTCCAT 57.636 39.130 37.09 35.05 45.85 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.