Multiple sequence alignment - TraesCS3D01G172300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G172300 chr3D 100.000 5885 0 0 1 5885 152851147 152845263 0.000000e+00 10868.0
1 TraesCS3D01G172300 chr3D 91.238 2705 150 22 1280 3931 153083119 153080449 0.000000e+00 3602.0
2 TraesCS3D01G172300 chr3D 93.133 932 51 9 320 1240 153084044 153083115 0.000000e+00 1354.0
3 TraesCS3D01G172300 chr3D 89.243 1004 56 17 3987 4974 153080352 153079385 0.000000e+00 1208.0
4 TraesCS3D01G172300 chr3D 86.942 605 47 14 5076 5652 153079388 153078788 0.000000e+00 651.0
5 TraesCS3D01G172300 chr3D 90.341 352 7 9 1 326 152701619 152701269 2.520000e-118 436.0
6 TraesCS3D01G172300 chr3D 99.187 123 1 0 5763 5885 152827393 152827271 7.680000e-54 222.0
7 TraesCS3D01G172300 chr3D 97.297 111 3 0 4971 5081 26258698 26258808 7.790000e-44 189.0
8 TraesCS3D01G172300 chr3D 92.135 89 5 2 3916 4003 152847145 152847232 2.230000e-24 124.0
9 TraesCS3D01G172300 chr3A 93.643 3634 157 28 320 3926 177105075 177108661 0.000000e+00 5363.0
10 TraesCS3D01G172300 chr3A 96.994 2728 48 9 1248 3958 177672861 177675571 0.000000e+00 4553.0
11 TraesCS3D01G172300 chr3A 90.139 1004 67 14 3984 4974 177109062 177110046 0.000000e+00 1277.0
12 TraesCS3D01G172300 chr3A 96.369 716 13 4 4015 4717 177675569 177676284 0.000000e+00 1166.0
13 TraesCS3D01G172300 chr3A 92.982 513 20 5 5206 5707 177676665 177677172 0.000000e+00 734.0
14 TraesCS3D01G172300 chr3A 95.439 285 9 1 1 285 177672350 177672630 8.990000e-123 451.0
15 TraesCS3D01G172300 chr3A 93.436 259 8 3 1 254 177888911 177889165 5.570000e-100 375.0
16 TraesCS3D01G172300 chr3A 96.907 194 6 0 4781 4974 177676286 177676479 5.690000e-85 326.0
17 TraesCS3D01G172300 chr3A 95.531 179 8 0 5076 5254 177676476 177676654 2.680000e-73 287.0
18 TraesCS3D01G172300 chr3A 95.092 163 6 2 282 442 177672706 177672868 7.570000e-64 255.0
19 TraesCS3D01G172300 chr3A 90.173 173 15 2 5439 5610 177110620 177110791 2.130000e-54 224.0
20 TraesCS3D01G172300 chr3A 93.443 122 6 1 4971 5090 256934689 256934810 4.690000e-41 180.0
21 TraesCS3D01G172300 chr3A 88.158 152 8 2 5101 5244 177110046 177110195 7.840000e-39 172.0
22 TraesCS3D01G172300 chr3A 89.706 136 10 3 4966 5100 295134226 295134358 2.820000e-38 171.0
23 TraesCS3D01G172300 chr3A 93.258 89 5 1 3914 4002 58929427 58929340 4.790000e-26 130.0
24 TraesCS3D01G172300 chr3A 90.909 88 7 1 3916 4003 587599536 587599450 3.730000e-22 117.0
25 TraesCS3D01G172300 chr3A 90.769 65 3 1 262 326 177889197 177889258 3.780000e-12 84.2
26 TraesCS3D01G172300 chr3A 92.857 42 2 1 5709 5749 177683401 177683442 6.370000e-05 60.2
27 TraesCS3D01G172300 chr3B 94.610 3228 132 16 726 3931 224319054 224315847 0.000000e+00 4959.0
28 TraesCS3D01G172300 chr3B 96.633 1574 39 5 2371 3932 224281751 224280180 0.000000e+00 2601.0
29 TraesCS3D01G172300 chr3B 95.352 1377 38 6 2569 3932 223663312 223661949 0.000000e+00 2165.0
30 TraesCS3D01G172300 chr3B 92.857 1246 58 15 1 1240 224163537 224162317 0.000000e+00 1779.0
31 TraesCS3D01G172300 chr3B 91.819 1259 61 21 1 1240 223677036 223675801 0.000000e+00 1716.0
32 TraesCS3D01G172300 chr3B 91.509 1272 52 26 1 1240 224286021 224284774 0.000000e+00 1700.0
33 TraesCS3D01G172300 chr3B 96.184 1022 24 3 3962 4974 223661948 223660933 0.000000e+00 1657.0
34 TraesCS3D01G172300 chr3B 96.184 1022 24 3 3962 4974 224280179 224279164 0.000000e+00 1657.0
35 TraesCS3D01G172300 chr3B 89.864 1174 78 21 1280 2419 223675805 223674639 0.000000e+00 1471.0
36 TraesCS3D01G172300 chr3B 89.735 1130 75 21 1280 2373 224284778 224283654 0.000000e+00 1406.0
37 TraesCS3D01G172300 chr3B 90.390 999 65 17 3987 4974 224315835 224314857 0.000000e+00 1284.0
38 TraesCS3D01G172300 chr3B 88.386 818 55 13 1280 2067 224162321 224161514 0.000000e+00 948.0
39 TraesCS3D01G172300 chr3B 89.649 541 35 15 2065 2604 224156270 224155750 0.000000e+00 669.0
40 TraesCS3D01G172300 chr3B 85.791 556 42 11 5076 5613 223660936 223660400 6.660000e-154 555.0
41 TraesCS3D01G172300 chr3B 84.892 556 47 13 5076 5613 224279167 224278631 1.450000e-145 527.0
42 TraesCS3D01G172300 chr3B 89.773 352 10 8 1 326 223557962 223557611 1.520000e-115 427.0
43 TraesCS3D01G172300 chr3B 80.769 390 51 15 320 691 224319433 224319050 3.470000e-72 283.0
44 TraesCS3D01G172300 chr3B 95.266 169 8 0 2405 2573 223669342 223669174 9.720000e-68 268.0
45 TraesCS3D01G172300 chr3B 90.863 197 16 1 5246 5440 224314193 224313997 4.520000e-66 263.0
46 TraesCS3D01G172300 chr1B 93.004 243 16 1 2213 2455 345497031 345497272 2.610000e-93 353.0
47 TraesCS3D01G172300 chr1B 91.398 93 7 1 3917 4009 562890134 562890043 6.190000e-25 126.0
48 TraesCS3D01G172300 chr2A 95.082 122 5 1 5765 5885 588271768 588271889 2.160000e-44 191.0
49 TraesCS3D01G172300 chr2A 93.548 124 7 1 5763 5885 233461521 233461398 3.620000e-42 183.0
50 TraesCS3D01G172300 chr2A 93.548 124 7 1 5763 5885 233466896 233466773 3.620000e-42 183.0
51 TraesCS3D01G172300 chr2A 93.548 124 5 2 5763 5885 588277102 588277223 1.300000e-41 182.0
52 TraesCS3D01G172300 chr5A 95.041 121 5 1 4967 5086 507966495 507966375 7.790000e-44 189.0
53 TraesCS3D01G172300 chr5A 93.600 125 7 1 5762 5885 489878980 489878856 1.010000e-42 185.0
54 TraesCS3D01G172300 chr5A 91.473 129 9 1 4960 5088 392583708 392583834 6.060000e-40 176.0
55 TraesCS3D01G172300 chr6A 93.548 124 6 2 5763 5885 6604007 6603885 3.620000e-42 183.0
56 TraesCS3D01G172300 chr6A 94.872 117 6 0 4961 5077 14133955 14134071 3.620000e-42 183.0
57 TraesCS3D01G172300 chr6A 93.548 124 7 1 5763 5885 297637575 297637698 3.620000e-42 183.0
58 TraesCS3D01G172300 chr7D 94.167 120 6 1 4967 5085 248393516 248393397 1.300000e-41 182.0
59 TraesCS3D01G172300 chr7D 93.023 86 4 2 3917 4002 41146646 41146563 2.230000e-24 124.0
60 TraesCS3D01G172300 chr4A 92.857 126 6 3 4968 5091 59261924 59262048 4.690000e-41 180.0
61 TraesCS3D01G172300 chr4A 90.526 95 8 1 3908 4002 642603535 642603628 2.230000e-24 124.0
62 TraesCS3D01G172300 chr1A 93.443 122 7 1 5765 5885 551164567 551164446 4.690000e-41 180.0
63 TraesCS3D01G172300 chr2B 85.806 155 19 2 4946 5099 601203605 601203757 1.700000e-35 161.0
64 TraesCS3D01G172300 chr7A 93.023 86 5 1 3917 4002 40538243 40538159 2.230000e-24 124.0
65 TraesCS3D01G172300 chr5D 93.023 86 4 2 3917 4002 122198431 122198514 2.230000e-24 124.0
66 TraesCS3D01G172300 chr4D 93.023 86 5 1 3917 4002 497058712 497058796 2.230000e-24 124.0
67 TraesCS3D01G172300 chrUn 90.196 51 4 1 5526 5575 62201697 62201647 1.370000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G172300 chr3D 152845263 152851147 5884 True 10868.000000 10868 100.000000 1 5885 1 chr3D.!!$R3 5884
1 TraesCS3D01G172300 chr3D 153078788 153084044 5256 True 1703.750000 3602 90.139000 320 5652 4 chr3D.!!$R4 5332
2 TraesCS3D01G172300 chr3A 177105075 177110791 5716 False 1759.000000 5363 90.528250 320 5610 4 chr3A.!!$F4 5290
3 TraesCS3D01G172300 chr3A 177672350 177677172 4822 False 1110.285714 4553 95.616286 1 5707 7 chr3A.!!$F5 5706
4 TraesCS3D01G172300 chr3B 224313997 224319433 5436 True 1697.250000 4959 89.158000 320 5440 4 chr3B.!!$R8 5120
5 TraesCS3D01G172300 chr3B 223674639 223677036 2397 True 1593.500000 1716 90.841500 1 2419 2 chr3B.!!$R5 2418
6 TraesCS3D01G172300 chr3B 224278631 224286021 7390 True 1578.200000 2601 91.790600 1 5613 5 chr3B.!!$R7 5612
7 TraesCS3D01G172300 chr3B 223660400 223663312 2912 True 1459.000000 2165 92.442333 2569 5613 3 chr3B.!!$R4 3044
8 TraesCS3D01G172300 chr3B 224161514 224163537 2023 True 1363.500000 1779 90.621500 1 2067 2 chr3B.!!$R6 2066
9 TraesCS3D01G172300 chr3B 224155750 224156270 520 True 669.000000 669 89.649000 2065 2604 1 chr3B.!!$R3 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 993 0.039035 GTGTCATGTAGGGGGCCAAA 59.961 55.000 4.39 0.0 0.00 3.28 F
878 1072 0.829990 TGCTTCGGTGATATGCCTCA 59.170 50.000 0.00 0.0 0.00 3.86 F
1879 2101 1.408683 GCCAAGGACATAGGTGCATCA 60.409 52.381 0.00 0.0 37.91 3.07 F
2723 4907 0.734889 CGCATTGTCCAATCTCCCAC 59.265 55.000 0.00 0.0 0.00 4.61 F
3263 5459 1.839994 CATCCTTCCTAGGGACTGCAA 59.160 52.381 9.46 0.0 42.26 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2658 4841 0.846015 CCCCCTACAGCCATTGATGA 59.154 55.000 0.00 0.00 0.00 2.92 R
2659 4842 3.426903 CCCCCTACAGCCATTGATG 57.573 57.895 0.00 0.00 0.00 3.07 R
3263 5459 2.746279 TTGAACCACCCAATCACACT 57.254 45.000 0.00 0.00 0.00 3.55 R
4282 6861 2.074576 CACACTGAACCATGAGCTCAG 58.925 52.381 22.96 11.98 41.93 3.35 R
4990 7603 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 204 2.231215 ATCGTGCTAGCCATCAGAAC 57.769 50.000 13.29 0.19 0.00 3.01
254 257 2.191128 AGGTGTGAATTGGTCTCTGC 57.809 50.000 0.00 0.00 0.00 4.26
266 293 4.406648 TGGTCTCTGCAATCGAATGTAT 57.593 40.909 1.83 0.00 0.00 2.29
392 501 0.870393 CATTTCTCTGCACACGCACT 59.130 50.000 0.00 0.00 45.36 4.40
708 880 6.959639 ATGTGAAACTATCAAAGTGTTGGT 57.040 33.333 0.00 0.00 40.50 3.67
819 993 0.039035 GTGTCATGTAGGGGGCCAAA 59.961 55.000 4.39 0.00 0.00 3.28
857 1031 4.469657 TCCTTAGCACTTGTTCCATTTGT 58.530 39.130 0.00 0.00 0.00 2.83
864 1038 4.622740 GCACTTGTTCCATTTGTATGCTTC 59.377 41.667 0.00 0.00 0.00 3.86
874 1068 4.811555 TTTGTATGCTTCGGTGATATGC 57.188 40.909 0.00 0.00 0.00 3.14
878 1072 0.829990 TGCTTCGGTGATATGCCTCA 59.170 50.000 0.00 0.00 0.00 3.86
943 1139 6.348498 CCCTCCTTCAAATCTGTTTGTTTTT 58.652 36.000 1.38 0.00 44.03 1.94
947 1147 9.533253 CTCCTTCAAATCTGTTTGTTTTTATGT 57.467 29.630 1.38 0.00 44.03 2.29
1026 1226 5.768164 GGTTCAGGGTTTCAGATCTTTTGTA 59.232 40.000 0.00 0.00 0.00 2.41
1108 1314 3.648339 TTTTGGTCTCTGCTGCATTTC 57.352 42.857 1.31 0.00 0.00 2.17
1224 1430 8.740369 GTTGATGCAAAATAATCATTCTTCTCG 58.260 33.333 0.00 0.00 33.01 4.04
1399 1606 6.532988 ACTGGACTTTTAAGGAGCTACTAG 57.467 41.667 0.00 0.00 0.00 2.57
1664 1886 4.268797 TGCTGCAAATTAAGGCATTCAA 57.731 36.364 0.00 0.00 39.65 2.69
1879 2101 1.408683 GCCAAGGACATAGGTGCATCA 60.409 52.381 0.00 0.00 37.91 3.07
2026 2283 6.183360 GGAAAAGTCAAAGATCTAAGCATCCC 60.183 42.308 0.00 0.00 0.00 3.85
2040 2301 7.301420 TCTAAGCATCCCCTATATAGAGATGG 58.699 42.308 27.05 17.92 35.87 3.51
2245 2507 4.502105 TGGTACATGCATTACTGGACAT 57.498 40.909 0.00 0.00 0.00 3.06
2246 2508 4.198530 TGGTACATGCATTACTGGACATG 58.801 43.478 0.00 0.00 44.29 3.21
2445 4616 3.079578 TGAGGAGCTCAAGCAATCTTTG 58.920 45.455 17.19 0.00 45.16 2.77
2612 4783 7.603784 ACAATGCTTTGAAACCTGAATTATTCC 59.396 33.333 18.35 0.00 36.64 3.01
2654 4837 5.804944 CTGGTGATCTCCAGTCATTATCT 57.195 43.478 28.32 0.00 46.92 1.98
2655 4838 6.172136 CTGGTGATCTCCAGTCATTATCTT 57.828 41.667 28.32 0.00 46.92 2.40
2656 4839 5.922053 TGGTGATCTCCAGTCATTATCTTG 58.078 41.667 12.50 0.00 33.19 3.02
2657 4840 5.163269 TGGTGATCTCCAGTCATTATCTTGG 60.163 44.000 12.50 0.00 33.19 3.61
2658 4841 5.163258 GGTGATCTCCAGTCATTATCTTGGT 60.163 44.000 8.97 0.00 0.00 3.67
2659 4842 5.988561 GTGATCTCCAGTCATTATCTTGGTC 59.011 44.000 0.00 0.00 0.00 4.02
2660 4843 5.662657 TGATCTCCAGTCATTATCTTGGTCA 59.337 40.000 0.00 0.00 0.00 4.02
2661 4844 6.328410 TGATCTCCAGTCATTATCTTGGTCAT 59.672 38.462 0.00 0.00 0.00 3.06
2723 4907 0.734889 CGCATTGTCCAATCTCCCAC 59.265 55.000 0.00 0.00 0.00 4.61
2911 5095 8.336235 TCAGGTGAATCTTTTAAATATGAGGGT 58.664 33.333 0.00 0.00 0.00 4.34
2934 5128 3.764237 AAGGGTGCTCGTAAAAAGAGA 57.236 42.857 0.00 0.00 37.93 3.10
3188 5382 7.254727 GGTTTTTCATTTCAAATGCAGCAGTTA 60.255 33.333 7.96 0.00 0.00 2.24
3205 5399 7.459486 CAGCAGTTACAAATATCTCAACAGTC 58.541 38.462 0.00 0.00 0.00 3.51
3263 5459 1.839994 CATCCTTCCTAGGGACTGCAA 59.160 52.381 9.46 0.00 42.26 4.08
3532 5735 7.621832 TTCGAATGAGTTGCACTAAATTTTG 57.378 32.000 0.00 0.00 0.00 2.44
3807 6016 6.540189 ACTGGTGTCAAGATTACATATTCAGC 59.460 38.462 0.00 0.00 0.00 4.26
4030 6582 5.182001 GCAAACCATAAACTGAGTGATCTGT 59.818 40.000 0.00 0.00 0.00 3.41
4177 6730 6.549736 ACTCATTAGGCACCAACTTAAACTTT 59.450 34.615 0.00 0.00 0.00 2.66
4221 6798 5.706447 ACAGATACTCCAGGCATACTCTTA 58.294 41.667 0.00 0.00 0.00 2.10
4222 6799 6.318913 ACAGATACTCCAGGCATACTCTTAT 58.681 40.000 0.00 0.00 0.00 1.73
4223 6800 6.784969 ACAGATACTCCAGGCATACTCTTATT 59.215 38.462 0.00 0.00 0.00 1.40
4224 6801 7.291182 ACAGATACTCCAGGCATACTCTTATTT 59.709 37.037 0.00 0.00 0.00 1.40
4225 6802 8.153550 CAGATACTCCAGGCATACTCTTATTTT 58.846 37.037 0.00 0.00 0.00 1.82
4282 6861 1.358046 GGCGCTCATGAATGCTTCC 59.642 57.895 7.64 8.45 0.00 3.46
4746 7327 1.267806 CAGTTTGACAATCTGGCGCTT 59.732 47.619 15.65 0.00 0.00 4.68
4818 7399 2.901192 TCTGATTCCAAGGGACGTTACA 59.099 45.455 0.00 0.00 0.00 2.41
4976 7589 9.765795 GAAATATGTATACAGCCATATACTCCC 57.234 37.037 11.91 0.00 38.39 4.30
4977 7590 9.507381 AAATATGTATACAGCCATATACTCCCT 57.493 33.333 11.91 0.00 38.39 4.20
4978 7591 9.507381 AATATGTATACAGCCATATACTCCCTT 57.493 33.333 11.91 0.00 38.39 3.95
4979 7592 7.814693 ATGTATACAGCCATATACTCCCTTT 57.185 36.000 11.91 0.00 38.39 3.11
4980 7593 7.004555 TGTATACAGCCATATACTCCCTTTG 57.995 40.000 0.08 0.00 38.39 2.77
4981 7594 6.557253 TGTATACAGCCATATACTCCCTTTGT 59.443 38.462 0.08 0.00 38.39 2.83
4982 7595 4.862641 ACAGCCATATACTCCCTTTGTT 57.137 40.909 0.00 0.00 0.00 2.83
4983 7596 4.781934 ACAGCCATATACTCCCTTTGTTC 58.218 43.478 0.00 0.00 0.00 3.18
4984 7597 4.475016 ACAGCCATATACTCCCTTTGTTCT 59.525 41.667 0.00 0.00 0.00 3.01
4985 7598 4.818546 CAGCCATATACTCCCTTTGTTCTG 59.181 45.833 0.00 0.00 0.00 3.02
4986 7599 4.721776 AGCCATATACTCCCTTTGTTCTGA 59.278 41.667 0.00 0.00 0.00 3.27
4987 7600 5.191722 AGCCATATACTCCCTTTGTTCTGAA 59.808 40.000 0.00 0.00 0.00 3.02
4988 7601 6.064717 GCCATATACTCCCTTTGTTCTGAAT 58.935 40.000 0.00 0.00 0.00 2.57
4989 7602 6.547510 GCCATATACTCCCTTTGTTCTGAATT 59.452 38.462 0.00 0.00 0.00 2.17
4990 7603 7.719633 GCCATATACTCCCTTTGTTCTGAATTA 59.280 37.037 0.00 0.00 0.00 1.40
4991 7604 9.057089 CCATATACTCCCTTTGTTCTGAATTAC 57.943 37.037 0.00 0.00 0.00 1.89
4992 7605 9.838339 CATATACTCCCTTTGTTCTGAATTACT 57.162 33.333 0.00 0.00 0.00 2.24
4994 7607 6.884280 ACTCCCTTTGTTCTGAATTACTTG 57.116 37.500 0.00 0.00 0.00 3.16
4995 7608 6.365520 ACTCCCTTTGTTCTGAATTACTTGT 58.634 36.000 0.00 0.00 0.00 3.16
4996 7609 6.486993 ACTCCCTTTGTTCTGAATTACTTGTC 59.513 38.462 0.00 0.00 0.00 3.18
4997 7610 5.468746 TCCCTTTGTTCTGAATTACTTGTCG 59.531 40.000 0.00 0.00 0.00 4.35
4998 7611 5.147162 CCTTTGTTCTGAATTACTTGTCGC 58.853 41.667 0.00 0.00 0.00 5.19
4999 7612 5.277779 CCTTTGTTCTGAATTACTTGTCGCA 60.278 40.000 0.00 0.00 0.00 5.10
5000 7613 4.990543 TGTTCTGAATTACTTGTCGCAG 57.009 40.909 0.00 0.00 0.00 5.18
5001 7614 3.745975 TGTTCTGAATTACTTGTCGCAGG 59.254 43.478 0.00 0.00 0.00 4.85
5002 7615 3.678056 TCTGAATTACTTGTCGCAGGT 57.322 42.857 0.00 0.91 0.00 4.00
5003 7616 4.794278 TCTGAATTACTTGTCGCAGGTA 57.206 40.909 0.00 0.00 0.00 3.08
5004 7617 5.339008 TCTGAATTACTTGTCGCAGGTAT 57.661 39.130 3.46 0.00 0.00 2.73
5005 7618 5.109210 TCTGAATTACTTGTCGCAGGTATG 58.891 41.667 3.46 0.00 0.00 2.39
5006 7619 4.188462 TGAATTACTTGTCGCAGGTATGG 58.812 43.478 3.46 0.00 0.00 2.74
5007 7620 4.081365 TGAATTACTTGTCGCAGGTATGGA 60.081 41.667 3.46 0.00 0.00 3.41
5008 7621 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
5009 7622 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
5010 7623 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
5011 7624 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
5012 7625 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
5013 7626 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
5014 7627 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
5015 7628 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
5016 7629 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
5017 7630 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
5018 7631 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
5019 7632 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
5020 7633 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
5021 7634 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
5022 7635 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
5023 7636 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
5051 7664 8.311395 AGTTCTAGATACATCCATTTCTGTGA 57.689 34.615 0.00 0.00 0.00 3.58
5052 7665 8.200792 AGTTCTAGATACATCCATTTCTGTGAC 58.799 37.037 0.00 0.00 0.00 3.67
5053 7666 6.739112 TCTAGATACATCCATTTCTGTGACG 58.261 40.000 0.00 0.00 0.00 4.35
5054 7667 5.598416 AGATACATCCATTTCTGTGACGA 57.402 39.130 0.00 0.00 0.00 4.20
5055 7668 5.595885 AGATACATCCATTTCTGTGACGAG 58.404 41.667 0.00 0.00 0.00 4.18
5056 7669 3.685139 ACATCCATTTCTGTGACGAGT 57.315 42.857 0.00 0.00 0.00 4.18
5057 7670 4.801330 ACATCCATTTCTGTGACGAGTA 57.199 40.909 0.00 0.00 0.00 2.59
5058 7671 5.147330 ACATCCATTTCTGTGACGAGTAA 57.853 39.130 0.00 0.00 0.00 2.24
5059 7672 5.734720 ACATCCATTTCTGTGACGAGTAAT 58.265 37.500 0.00 0.00 0.00 1.89
5060 7673 6.173339 ACATCCATTTCTGTGACGAGTAATT 58.827 36.000 0.00 0.00 0.00 1.40
5061 7674 6.655003 ACATCCATTTCTGTGACGAGTAATTT 59.345 34.615 0.00 0.00 0.00 1.82
5062 7675 6.480524 TCCATTTCTGTGACGAGTAATTTG 57.519 37.500 0.00 0.00 0.00 2.32
5063 7676 5.411361 TCCATTTCTGTGACGAGTAATTTGG 59.589 40.000 0.00 0.00 0.00 3.28
5064 7677 5.411361 CCATTTCTGTGACGAGTAATTTGGA 59.589 40.000 0.00 0.00 0.00 3.53
5065 7678 6.072728 CCATTTCTGTGACGAGTAATTTGGAA 60.073 38.462 0.00 0.00 0.00 3.53
5066 7679 5.917541 TTCTGTGACGAGTAATTTGGAAC 57.082 39.130 0.00 0.00 0.00 3.62
5067 7680 3.985279 TCTGTGACGAGTAATTTGGAACG 59.015 43.478 0.00 0.00 0.00 3.95
5068 7681 3.061322 TGTGACGAGTAATTTGGAACGG 58.939 45.455 0.00 0.00 0.00 4.44
5069 7682 3.243805 TGTGACGAGTAATTTGGAACGGA 60.244 43.478 0.00 0.00 0.00 4.69
5070 7683 3.367025 GTGACGAGTAATTTGGAACGGAG 59.633 47.826 0.00 0.00 0.00 4.63
5071 7684 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5072 7685 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5073 7686 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5074 7687 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5075 7688 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
5076 7689 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
5077 7690 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
5078 7691 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
5096 7709 7.420446 GGGAGTACTAGAATGAGAGGAAGAGTA 60.420 44.444 0.00 0.00 0.00 2.59
5289 8454 2.558795 TCTCTACCTTCAGCACTGTGAC 59.441 50.000 12.86 3.00 0.00 3.67
5548 8876 4.219288 AGGTGAGCTGAATCAAATTTGTCC 59.781 41.667 17.47 8.71 0.00 4.02
5688 9033 0.765510 ACACCCTTGGTTGTCTCTCC 59.234 55.000 0.00 0.00 31.02 3.71
5690 9035 0.401395 ACCCTTGGTTGTCTCTCCCA 60.401 55.000 0.00 0.00 27.29 4.37
5707 9052 1.097232 CCAGCACCCACACACATATG 58.903 55.000 0.00 0.00 0.00 1.78
5708 9053 0.452987 CAGCACCCACACACATATGC 59.547 55.000 1.58 0.00 0.00 3.14
5709 9054 0.038021 AGCACCCACACACATATGCA 59.962 50.000 1.58 0.00 35.51 3.96
5710 9055 0.171007 GCACCCACACACATATGCAC 59.829 55.000 1.58 0.00 33.27 4.57
5711 9056 0.447406 CACCCACACACATATGCACG 59.553 55.000 1.58 0.00 0.00 5.34
5712 9057 0.323302 ACCCACACACATATGCACGA 59.677 50.000 1.58 0.00 0.00 4.35
5713 9058 1.065491 ACCCACACACATATGCACGAT 60.065 47.619 1.58 0.00 0.00 3.73
5714 9059 1.599071 CCCACACACATATGCACGATC 59.401 52.381 1.58 0.00 0.00 3.69
5715 9060 2.554142 CCACACACATATGCACGATCT 58.446 47.619 1.58 0.00 0.00 2.75
5716 9061 3.492482 CCCACACACATATGCACGATCTA 60.492 47.826 1.58 0.00 0.00 1.98
5717 9062 4.309933 CCACACACATATGCACGATCTAT 58.690 43.478 1.58 0.00 0.00 1.98
5718 9063 4.386954 CCACACACATATGCACGATCTATC 59.613 45.833 1.58 0.00 0.00 2.08
5719 9064 4.984161 CACACACATATGCACGATCTATCA 59.016 41.667 1.58 0.00 0.00 2.15
5720 9065 5.118203 CACACACATATGCACGATCTATCAG 59.882 44.000 1.58 0.00 0.00 2.90
5721 9066 4.624452 CACACATATGCACGATCTATCAGG 59.376 45.833 1.58 0.00 0.00 3.86
5722 9067 4.524328 ACACATATGCACGATCTATCAGGA 59.476 41.667 1.58 0.00 0.00 3.86
5723 9068 5.186603 ACACATATGCACGATCTATCAGGAT 59.813 40.000 1.58 0.00 0.00 3.24
5724 9069 5.519206 CACATATGCACGATCTATCAGGATG 59.481 44.000 1.58 0.00 37.54 3.51
5743 9088 9.439461 TCAGGATGAAATAGAAGAAATCCTAGA 57.561 33.333 1.86 1.07 45.97 2.43
5744 9089 9.487790 CAGGATGAAATAGAAGAAATCCTAGAC 57.512 37.037 1.86 0.00 41.51 2.59
5745 9090 9.218525 AGGATGAAATAGAAGAAATCCTAGACA 57.781 33.333 0.18 0.00 41.61 3.41
5746 9091 9.267084 GGATGAAATAGAAGAAATCCTAGACAC 57.733 37.037 0.00 0.00 32.52 3.67
5747 9092 9.823647 GATGAAATAGAAGAAATCCTAGACACA 57.176 33.333 0.00 0.00 0.00 3.72
5748 9093 9.606631 ATGAAATAGAAGAAATCCTAGACACAC 57.393 33.333 0.00 0.00 0.00 3.82
5749 9094 8.816894 TGAAATAGAAGAAATCCTAGACACACT 58.183 33.333 0.00 0.00 0.00 3.55
5750 9095 9.308318 GAAATAGAAGAAATCCTAGACACACTC 57.692 37.037 0.00 0.00 0.00 3.51
5751 9096 5.317733 AGAAGAAATCCTAGACACACTCG 57.682 43.478 0.00 0.00 0.00 4.18
5752 9097 4.158764 AGAAGAAATCCTAGACACACTCGG 59.841 45.833 0.00 0.00 33.38 4.63
5753 9098 2.166664 AGAAATCCTAGACACACTCGGC 59.833 50.000 0.00 0.00 32.32 5.54
5754 9099 1.557099 AATCCTAGACACACTCGGCA 58.443 50.000 0.00 0.00 32.32 5.69
5755 9100 1.107114 ATCCTAGACACACTCGGCAG 58.893 55.000 0.00 0.00 32.32 4.85
5756 9101 1.153745 CCTAGACACACTCGGCAGC 60.154 63.158 0.00 0.00 0.00 5.25
5757 9102 1.586541 CTAGACACACTCGGCAGCA 59.413 57.895 0.00 0.00 0.00 4.41
5758 9103 0.734253 CTAGACACACTCGGCAGCAC 60.734 60.000 0.00 0.00 0.00 4.40
5759 9104 1.460273 TAGACACACTCGGCAGCACA 61.460 55.000 0.00 0.00 0.00 4.57
5760 9105 1.887242 GACACACTCGGCAGCACAA 60.887 57.895 0.00 0.00 0.00 3.33
5761 9106 1.835483 GACACACTCGGCAGCACAAG 61.835 60.000 0.00 0.00 0.00 3.16
5762 9107 1.889105 CACACTCGGCAGCACAAGT 60.889 57.895 0.00 0.00 0.00 3.16
5763 9108 1.889105 ACACTCGGCAGCACAAGTG 60.889 57.895 15.73 15.73 43.69 3.16
5764 9109 1.889105 CACTCGGCAGCACAAGTGT 60.889 57.895 11.16 0.00 35.51 3.55
5765 9110 1.153168 ACTCGGCAGCACAAGTGTT 60.153 52.632 1.79 0.00 0.00 3.32
5766 9111 1.280746 CTCGGCAGCACAAGTGTTG 59.719 57.895 11.97 11.97 43.40 3.33
5767 9112 1.153269 TCGGCAGCACAAGTGTTGA 60.153 52.632 19.16 0.00 43.25 3.18
5768 9113 0.746204 TCGGCAGCACAAGTGTTGAA 60.746 50.000 19.16 2.90 43.25 2.69
5769 9114 0.311790 CGGCAGCACAAGTGTTGAAT 59.688 50.000 19.16 0.00 43.25 2.57
5770 9115 1.664016 CGGCAGCACAAGTGTTGAATC 60.664 52.381 19.16 7.91 43.25 2.52
5771 9116 1.664016 GGCAGCACAAGTGTTGAATCG 60.664 52.381 19.16 0.00 43.25 3.34
5772 9117 1.664016 GCAGCACAAGTGTTGAATCGG 60.664 52.381 19.16 0.00 43.25 4.18
5773 9118 1.069022 CAGCACAAGTGTTGAATCGGG 60.069 52.381 11.00 0.00 43.25 5.14
5774 9119 1.202758 AGCACAAGTGTTGAATCGGGA 60.203 47.619 1.79 0.00 0.00 5.14
5775 9120 1.197721 GCACAAGTGTTGAATCGGGAG 59.802 52.381 1.79 0.00 0.00 4.30
5776 9121 2.766313 CACAAGTGTTGAATCGGGAGA 58.234 47.619 0.00 0.00 46.90 3.71
5777 9122 2.480419 CACAAGTGTTGAATCGGGAGAC 59.520 50.000 0.00 0.00 44.82 3.36
5778 9123 1.726791 CAAGTGTTGAATCGGGAGACG 59.273 52.381 0.00 0.00 44.82 4.18
5779 9124 0.246635 AGTGTTGAATCGGGAGACGG 59.753 55.000 0.00 0.00 44.82 4.79
5780 9125 0.739813 GTGTTGAATCGGGAGACGGG 60.740 60.000 0.00 0.00 44.82 5.28
5781 9126 1.189524 TGTTGAATCGGGAGACGGGT 61.190 55.000 0.00 0.00 44.82 5.28
5782 9127 0.819582 GTTGAATCGGGAGACGGGTA 59.180 55.000 0.00 0.00 44.82 3.69
5783 9128 0.819582 TTGAATCGGGAGACGGGTAC 59.180 55.000 0.00 0.00 44.82 3.34
5784 9129 1.039233 TGAATCGGGAGACGGGTACC 61.039 60.000 2.17 2.17 44.82 3.34
5785 9130 0.754587 GAATCGGGAGACGGGTACCT 60.755 60.000 12.72 0.00 45.81 3.08
5786 9131 0.325016 AATCGGGAGACGGGTACCTT 60.325 55.000 12.72 0.00 45.81 3.50
5798 9143 1.954927 GGTACCTTCATACAGCAGCC 58.045 55.000 4.06 0.00 0.00 4.85
5799 9144 1.486726 GGTACCTTCATACAGCAGCCT 59.513 52.381 4.06 0.00 0.00 4.58
5800 9145 2.483889 GGTACCTTCATACAGCAGCCTC 60.484 54.545 4.06 0.00 0.00 4.70
5801 9146 0.543749 ACCTTCATACAGCAGCCTCC 59.456 55.000 0.00 0.00 0.00 4.30
5802 9147 0.835941 CCTTCATACAGCAGCCTCCT 59.164 55.000 0.00 0.00 0.00 3.69
5803 9148 1.211457 CCTTCATACAGCAGCCTCCTT 59.789 52.381 0.00 0.00 0.00 3.36
5804 9149 2.356535 CCTTCATACAGCAGCCTCCTTT 60.357 50.000 0.00 0.00 0.00 3.11
5805 9150 2.698855 TCATACAGCAGCCTCCTTTC 57.301 50.000 0.00 0.00 0.00 2.62
5806 9151 2.191400 TCATACAGCAGCCTCCTTTCT 58.809 47.619 0.00 0.00 0.00 2.52
5807 9152 2.093288 TCATACAGCAGCCTCCTTTCTG 60.093 50.000 0.00 0.00 0.00 3.02
5808 9153 1.352083 TACAGCAGCCTCCTTTCTGT 58.648 50.000 0.00 0.00 40.60 3.41
5809 9154 0.036022 ACAGCAGCCTCCTTTCTGTC 59.964 55.000 0.00 0.00 33.16 3.51
5810 9155 0.324285 CAGCAGCCTCCTTTCTGTCT 59.676 55.000 0.00 0.00 33.09 3.41
5811 9156 1.063183 AGCAGCCTCCTTTCTGTCTT 58.937 50.000 0.00 0.00 33.09 3.01
5812 9157 1.163554 GCAGCCTCCTTTCTGTCTTG 58.836 55.000 0.00 0.00 33.09 3.02
5813 9158 1.544314 GCAGCCTCCTTTCTGTCTTGT 60.544 52.381 0.00 0.00 33.09 3.16
5814 9159 2.856222 CAGCCTCCTTTCTGTCTTGTT 58.144 47.619 0.00 0.00 0.00 2.83
5815 9160 3.217626 CAGCCTCCTTTCTGTCTTGTTT 58.782 45.455 0.00 0.00 0.00 2.83
5816 9161 3.251972 CAGCCTCCTTTCTGTCTTGTTTC 59.748 47.826 0.00 0.00 0.00 2.78
5817 9162 2.554462 GCCTCCTTTCTGTCTTGTTTCC 59.446 50.000 0.00 0.00 0.00 3.13
5818 9163 3.748989 GCCTCCTTTCTGTCTTGTTTCCT 60.749 47.826 0.00 0.00 0.00 3.36
5819 9164 3.817647 CCTCCTTTCTGTCTTGTTTCCTG 59.182 47.826 0.00 0.00 0.00 3.86
5820 9165 3.214328 TCCTTTCTGTCTTGTTTCCTGC 58.786 45.455 0.00 0.00 0.00 4.85
5821 9166 2.031682 CCTTTCTGTCTTGTTTCCTGCG 60.032 50.000 0.00 0.00 0.00 5.18
5822 9167 2.325583 TTCTGTCTTGTTTCCTGCGT 57.674 45.000 0.00 0.00 0.00 5.24
5823 9168 1.581934 TCTGTCTTGTTTCCTGCGTG 58.418 50.000 0.00 0.00 0.00 5.34
5824 9169 1.138069 TCTGTCTTGTTTCCTGCGTGA 59.862 47.619 0.00 0.00 0.00 4.35
5825 9170 1.528586 CTGTCTTGTTTCCTGCGTGAG 59.471 52.381 0.00 0.00 0.00 3.51
5826 9171 1.134521 TGTCTTGTTTCCTGCGTGAGT 60.135 47.619 0.00 0.00 0.00 3.41
5827 9172 1.261619 GTCTTGTTTCCTGCGTGAGTG 59.738 52.381 0.00 0.00 0.00 3.51
5828 9173 1.134521 TCTTGTTTCCTGCGTGAGTGT 60.135 47.619 0.00 0.00 0.00 3.55
5829 9174 1.003545 CTTGTTTCCTGCGTGAGTGTG 60.004 52.381 0.00 0.00 0.00 3.82
5830 9175 0.107897 TGTTTCCTGCGTGAGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
5831 9176 0.304705 GTTTCCTGCGTGAGTGTGTG 59.695 55.000 0.00 0.00 0.00 3.82
5832 9177 0.107897 TTTCCTGCGTGAGTGTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
5833 9178 0.529773 TTCCTGCGTGAGTGTGTGTC 60.530 55.000 0.00 0.00 0.00 3.67
5834 9179 1.068083 CCTGCGTGAGTGTGTGTCT 59.932 57.895 0.00 0.00 0.00 3.41
5835 9180 0.941463 CCTGCGTGAGTGTGTGTCTC 60.941 60.000 0.00 0.00 0.00 3.36
5836 9181 0.249031 CTGCGTGAGTGTGTGTCTCA 60.249 55.000 0.00 0.00 39.25 3.27
5837 9182 0.249031 TGCGTGAGTGTGTGTCTCAG 60.249 55.000 0.00 0.00 41.66 3.35
5838 9183 0.030773 GCGTGAGTGTGTGTCTCAGA 59.969 55.000 0.00 0.00 41.66 3.27
5839 9184 1.336332 GCGTGAGTGTGTGTCTCAGAT 60.336 52.381 0.00 0.00 41.66 2.90
5840 9185 2.323059 CGTGAGTGTGTGTCTCAGATG 58.677 52.381 0.00 0.00 41.66 2.90
5841 9186 2.287849 CGTGAGTGTGTGTCTCAGATGT 60.288 50.000 0.00 0.00 41.66 3.06
5842 9187 3.055591 GTGAGTGTGTGTCTCAGATGTG 58.944 50.000 0.00 0.00 41.66 3.21
5843 9188 2.036346 TGAGTGTGTGTCTCAGATGTGG 59.964 50.000 0.00 0.00 37.07 4.17
5844 9189 1.151668 GTGTGTGTCTCAGATGTGGC 58.848 55.000 0.00 0.00 0.00 5.01
5845 9190 0.319813 TGTGTGTCTCAGATGTGGCG 60.320 55.000 0.00 0.00 0.00 5.69
5846 9191 1.016130 GTGTGTCTCAGATGTGGCGG 61.016 60.000 0.00 0.00 0.00 6.13
5847 9192 2.103042 GTGTCTCAGATGTGGCGGC 61.103 63.158 0.00 0.00 0.00 6.53
5848 9193 2.285773 TGTCTCAGATGTGGCGGCT 61.286 57.895 11.43 0.00 0.00 5.52
5849 9194 1.520342 GTCTCAGATGTGGCGGCTC 60.520 63.158 11.43 7.43 0.00 4.70
5850 9195 1.984026 TCTCAGATGTGGCGGCTCA 60.984 57.895 16.35 16.35 0.00 4.26
5851 9196 1.812922 CTCAGATGTGGCGGCTCAC 60.813 63.158 16.35 12.72 38.09 3.51
5852 9197 2.236223 CTCAGATGTGGCGGCTCACT 62.236 60.000 16.35 12.11 38.40 3.41
5853 9198 1.812922 CAGATGTGGCGGCTCACTC 60.813 63.158 16.35 13.83 38.40 3.51
5854 9199 2.887568 GATGTGGCGGCTCACTCG 60.888 66.667 16.35 0.00 38.40 4.18
5855 9200 4.457496 ATGTGGCGGCTCACTCGG 62.457 66.667 16.35 0.00 38.40 4.63
5860 9205 4.373116 GCGGCTCACTCGGGACAA 62.373 66.667 0.00 0.00 0.00 3.18
5861 9206 2.125912 CGGCTCACTCGGGACAAG 60.126 66.667 0.00 0.00 0.00 3.16
5862 9207 2.266055 GGCTCACTCGGGACAAGG 59.734 66.667 0.00 0.00 0.00 3.61
5863 9208 2.266055 GCTCACTCGGGACAAGGG 59.734 66.667 0.00 0.00 0.00 3.95
5864 9209 2.283529 GCTCACTCGGGACAAGGGA 61.284 63.158 0.00 0.00 0.00 4.20
5865 9210 1.827399 GCTCACTCGGGACAAGGGAA 61.827 60.000 0.00 0.00 0.00 3.97
5866 9211 0.247736 CTCACTCGGGACAAGGGAAG 59.752 60.000 0.00 0.00 0.00 3.46
5867 9212 0.178944 TCACTCGGGACAAGGGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
5868 9213 0.247736 CACTCGGGACAAGGGAAGAG 59.752 60.000 0.00 0.00 0.00 2.85
5869 9214 0.905337 ACTCGGGACAAGGGAAGAGG 60.905 60.000 0.00 0.00 0.00 3.69
5870 9215 1.612442 TCGGGACAAGGGAAGAGGG 60.612 63.158 0.00 0.00 0.00 4.30
5871 9216 2.670148 CGGGACAAGGGAAGAGGGG 61.670 68.421 0.00 0.00 0.00 4.79
5872 9217 2.677848 GGACAAGGGAAGAGGGGC 59.322 66.667 0.00 0.00 0.00 5.80
5873 9218 1.925972 GGACAAGGGAAGAGGGGCT 60.926 63.158 0.00 0.00 0.00 5.19
5874 9219 1.604915 GACAAGGGAAGAGGGGCTC 59.395 63.158 0.00 0.00 0.00 4.70
5875 9220 1.916206 GACAAGGGAAGAGGGGCTCC 61.916 65.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
254 257 6.421377 TCAGACACCAAATACATTCGATTG 57.579 37.500 5.78 5.78 0.00 2.67
368 477 1.609208 GTGTGCAGAGAAATGGGTGT 58.391 50.000 0.00 0.00 0.00 4.16
392 501 4.616143 GCGGCAGATCTATCTAAATCGACA 60.616 45.833 0.00 0.00 34.85 4.35
558 701 2.797792 CGTCCATCTCAAGCTACTCTGC 60.798 54.545 0.00 0.00 0.00 4.26
708 880 2.106338 TCACAATCCAAGGCAAGACTCA 59.894 45.455 0.00 0.00 0.00 3.41
819 993 6.543831 GTGCTAAGGATATGAATGAACAACCT 59.456 38.462 0.00 0.00 0.00 3.50
857 1031 2.632512 TGAGGCATATCACCGAAGCATA 59.367 45.455 0.00 0.00 0.00 3.14
864 1038 0.940126 GCAACTGAGGCATATCACCG 59.060 55.000 0.00 0.00 0.00 4.94
874 1068 3.508793 AGACATGGAATTTGCAACTGAGG 59.491 43.478 0.00 0.00 0.00 3.86
878 1072 5.733620 ATTCAGACATGGAATTTGCAACT 57.266 34.783 0.00 0.00 31.10 3.16
1003 1203 5.774498 ACAAAAGATCTGAAACCCTGAAC 57.226 39.130 0.00 0.00 0.00 3.18
1006 1206 5.945784 TCCATACAAAAGATCTGAAACCCTG 59.054 40.000 0.00 0.00 0.00 4.45
1026 1226 5.363562 TTTGATATGAGACAGCTGTCCAT 57.636 39.130 37.09 35.05 45.85 3.41
1399 1606 8.317679 AGCTCTGGTGGAATAATTATGTATCTC 58.682 37.037 0.00 0.00 0.00 2.75
1664 1886 1.383523 GGCCTACGTACTAGAACCGT 58.616 55.000 0.00 4.05 38.53 4.83
1786 2008 7.218773 GCAACATACTAATGCATACAACAACAG 59.781 37.037 0.00 0.00 39.81 3.16
1879 2101 1.683917 CGTCTTCTGCTACAGGCCTAT 59.316 52.381 3.98 0.00 40.92 2.57
2040 2301 7.792374 TTCTTCCTGAAACATAGATACATGC 57.208 36.000 0.00 0.00 0.00 4.06
2245 2507 4.386867 TTTTATTGGGCGTTCAACAACA 57.613 36.364 0.00 0.00 32.14 3.33
2445 4616 8.883731 AGTTCTGTACAATCAACATTAGCATAC 58.116 33.333 12.27 0.00 0.00 2.39
2612 4783 3.251487 CAGCAAATTTTGGCCTGAAAAGG 59.749 43.478 3.32 0.00 0.00 3.11
2650 4833 4.508551 ACAGCCATTGATGACCAAGATA 57.491 40.909 0.00 0.00 38.31 1.98
2651 4834 3.377253 ACAGCCATTGATGACCAAGAT 57.623 42.857 0.00 0.00 38.31 2.40
2652 4835 2.885135 ACAGCCATTGATGACCAAGA 57.115 45.000 0.00 0.00 38.31 3.02
2653 4836 2.947652 CCTACAGCCATTGATGACCAAG 59.052 50.000 0.00 0.00 38.31 3.61
2654 4837 2.357050 CCCTACAGCCATTGATGACCAA 60.357 50.000 0.00 0.00 39.41 3.67
2655 4838 1.212688 CCCTACAGCCATTGATGACCA 59.787 52.381 0.00 0.00 0.00 4.02
2656 4839 1.477558 CCCCTACAGCCATTGATGACC 60.478 57.143 0.00 0.00 0.00 4.02
2657 4840 1.477558 CCCCCTACAGCCATTGATGAC 60.478 57.143 0.00 0.00 0.00 3.06
2658 4841 0.846015 CCCCCTACAGCCATTGATGA 59.154 55.000 0.00 0.00 0.00 2.92
2659 4842 3.426903 CCCCCTACAGCCATTGATG 57.573 57.895 0.00 0.00 0.00 3.07
2911 5095 3.811083 TCTTTTTACGAGCACCCTTTCA 58.189 40.909 0.00 0.00 0.00 2.69
2934 5128 7.938140 TCGTTTGGATAATGATCTCCTTTTT 57.062 32.000 0.00 0.00 32.47 1.94
3001 5195 5.033589 ACTAAGGCTGATTTCAGAGATGG 57.966 43.478 11.70 1.29 46.59 3.51
3188 5382 9.896645 ATAGAACATGACTGTTGAGATATTTGT 57.103 29.630 0.00 0.00 45.57 2.83
3205 5399 7.495934 AGAACCTCCGTTTGATAATAGAACATG 59.504 37.037 0.00 0.00 30.30 3.21
3263 5459 2.746279 TTGAACCACCCAATCACACT 57.254 45.000 0.00 0.00 0.00 3.55
3366 5565 6.882610 TGACATTTGCAGAAGATAAACAGT 57.117 33.333 0.00 0.00 0.00 3.55
3532 5735 8.232913 TGGCTTATACCAAAAATACCAAGATC 57.767 34.615 0.00 0.00 36.55 2.75
3691 5900 9.640952 ATTATTAAAGGTGGCACATGTAAGTAT 57.359 29.630 20.82 11.97 44.52 2.12
3807 6016 6.263842 ACCATGTATTTGTCTGCTATTCCATG 59.736 38.462 0.00 0.00 0.00 3.66
4030 6582 6.099269 ACTGGTTCTCTAAACTACAGGTCAAA 59.901 38.462 0.00 0.00 0.00 2.69
4282 6861 2.074576 CACACTGAACCATGAGCTCAG 58.925 52.381 22.96 11.98 41.93 3.35
4818 7399 3.446516 GTCTGTAACCCGATGTTAGTCCT 59.553 47.826 0.00 0.00 40.05 3.85
4965 7556 9.057089 GTAATTCAGAACAAAGGGAGTATATGG 57.943 37.037 0.00 0.00 0.00 2.74
4974 7587 5.689819 CGACAAGTAATTCAGAACAAAGGG 58.310 41.667 0.00 0.00 0.00 3.95
4975 7588 5.147162 GCGACAAGTAATTCAGAACAAAGG 58.853 41.667 0.00 0.00 0.00 3.11
4976 7589 5.747565 TGCGACAAGTAATTCAGAACAAAG 58.252 37.500 0.00 0.00 0.00 2.77
4977 7590 5.277779 CCTGCGACAAGTAATTCAGAACAAA 60.278 40.000 0.00 0.00 0.00 2.83
4978 7591 4.213270 CCTGCGACAAGTAATTCAGAACAA 59.787 41.667 0.00 0.00 0.00 2.83
4979 7592 3.745975 CCTGCGACAAGTAATTCAGAACA 59.254 43.478 0.00 0.00 0.00 3.18
4980 7593 3.746492 ACCTGCGACAAGTAATTCAGAAC 59.254 43.478 0.00 0.00 0.00 3.01
4981 7594 4.002906 ACCTGCGACAAGTAATTCAGAA 57.997 40.909 0.00 0.00 0.00 3.02
4982 7595 3.678056 ACCTGCGACAAGTAATTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
4983 7596 4.271049 CCATACCTGCGACAAGTAATTCAG 59.729 45.833 0.00 0.00 0.00 3.02
4984 7597 4.081365 TCCATACCTGCGACAAGTAATTCA 60.081 41.667 0.00 0.00 0.00 2.57
4985 7598 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
4986 7599 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
4987 7600 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
4988 7601 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
4989 7602 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
4990 7603 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
4991 7604 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
4992 7605 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
4993 7606 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
4994 7607 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
4995 7608 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
4996 7609 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
4997 7610 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
5025 7638 9.421399 TCACAGAAATGGATGTATCTAGAACTA 57.579 33.333 0.00 0.00 0.00 2.24
5026 7639 8.200792 GTCACAGAAATGGATGTATCTAGAACT 58.799 37.037 0.00 0.00 0.00 3.01
5027 7640 7.168302 CGTCACAGAAATGGATGTATCTAGAAC 59.832 40.741 0.00 0.00 0.00 3.01
5028 7641 7.068226 TCGTCACAGAAATGGATGTATCTAGAA 59.932 37.037 0.00 0.00 0.00 2.10
5029 7642 6.546034 TCGTCACAGAAATGGATGTATCTAGA 59.454 38.462 0.00 0.00 0.00 2.43
5030 7643 6.739112 TCGTCACAGAAATGGATGTATCTAG 58.261 40.000 0.00 0.00 0.00 2.43
5031 7644 6.321435 ACTCGTCACAGAAATGGATGTATCTA 59.679 38.462 0.00 0.00 0.00 1.98
5032 7645 5.127845 ACTCGTCACAGAAATGGATGTATCT 59.872 40.000 0.00 0.00 0.00 1.98
5033 7646 5.352284 ACTCGTCACAGAAATGGATGTATC 58.648 41.667 0.00 0.00 0.00 2.24
5034 7647 5.344743 ACTCGTCACAGAAATGGATGTAT 57.655 39.130 0.00 0.00 0.00 2.29
5035 7648 4.801330 ACTCGTCACAGAAATGGATGTA 57.199 40.909 0.00 0.00 0.00 2.29
5036 7649 3.685139 ACTCGTCACAGAAATGGATGT 57.315 42.857 0.00 0.00 0.00 3.06
5037 7650 6.668541 AATTACTCGTCACAGAAATGGATG 57.331 37.500 0.00 0.00 0.00 3.51
5038 7651 6.094048 CCAAATTACTCGTCACAGAAATGGAT 59.906 38.462 0.00 0.00 0.00 3.41
5039 7652 5.411361 CCAAATTACTCGTCACAGAAATGGA 59.589 40.000 0.00 0.00 0.00 3.41
5040 7653 5.411361 TCCAAATTACTCGTCACAGAAATGG 59.589 40.000 0.00 0.00 0.00 3.16
5041 7654 6.480524 TCCAAATTACTCGTCACAGAAATG 57.519 37.500 0.00 0.00 0.00 2.32
5042 7655 6.347402 CGTTCCAAATTACTCGTCACAGAAAT 60.347 38.462 0.00 0.00 0.00 2.17
5043 7656 5.050634 CGTTCCAAATTACTCGTCACAGAAA 60.051 40.000 0.00 0.00 0.00 2.52
5044 7657 4.446385 CGTTCCAAATTACTCGTCACAGAA 59.554 41.667 0.00 0.00 0.00 3.02
5045 7658 3.985279 CGTTCCAAATTACTCGTCACAGA 59.015 43.478 0.00 0.00 0.00 3.41
5046 7659 3.122948 CCGTTCCAAATTACTCGTCACAG 59.877 47.826 0.00 0.00 0.00 3.66
5047 7660 3.061322 CCGTTCCAAATTACTCGTCACA 58.939 45.455 0.00 0.00 0.00 3.58
5048 7661 3.319755 TCCGTTCCAAATTACTCGTCAC 58.680 45.455 0.00 0.00 0.00 3.67
5049 7662 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
5050 7663 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
5051 7664 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
5052 7665 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
5053 7666 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
5054 7667 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5055 7668 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5056 7669 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
5057 7670 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
5058 7671 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
5059 7672 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5060 7673 2.309755 TCTAGTACTCCCTCCGTTCCAA 59.690 50.000 0.00 0.00 0.00 3.53
5061 7674 1.918262 TCTAGTACTCCCTCCGTTCCA 59.082 52.381 0.00 0.00 0.00 3.53
5062 7675 2.725221 TCTAGTACTCCCTCCGTTCC 57.275 55.000 0.00 0.00 0.00 3.62
5063 7676 4.205587 TCATTCTAGTACTCCCTCCGTTC 58.794 47.826 0.00 0.00 0.00 3.95
5064 7677 4.079901 TCTCATTCTAGTACTCCCTCCGTT 60.080 45.833 0.00 0.00 0.00 4.44
5065 7678 3.458857 TCTCATTCTAGTACTCCCTCCGT 59.541 47.826 0.00 0.00 0.00 4.69
5066 7679 4.069304 CTCTCATTCTAGTACTCCCTCCG 58.931 52.174 0.00 0.00 0.00 4.63
5067 7680 4.105057 TCCTCTCATTCTAGTACTCCCTCC 59.895 50.000 0.00 0.00 0.00 4.30
5068 7681 5.313280 TCCTCTCATTCTAGTACTCCCTC 57.687 47.826 0.00 0.00 0.00 4.30
5069 7682 5.433712 TCTTCCTCTCATTCTAGTACTCCCT 59.566 44.000 0.00 0.00 0.00 4.20
5070 7683 5.697067 TCTTCCTCTCATTCTAGTACTCCC 58.303 45.833 0.00 0.00 0.00 4.30
5071 7684 6.362248 ACTCTTCCTCTCATTCTAGTACTCC 58.638 44.000 0.00 0.00 0.00 3.85
5072 7685 7.988599 TGTACTCTTCCTCTCATTCTAGTACTC 59.011 40.741 0.00 0.00 39.05 2.59
5073 7686 7.863722 TGTACTCTTCCTCTCATTCTAGTACT 58.136 38.462 0.00 0.00 39.05 2.73
5074 7687 8.508883 TTGTACTCTTCCTCTCATTCTAGTAC 57.491 38.462 0.00 0.00 38.86 2.73
5076 7689 9.349713 CTATTGTACTCTTCCTCTCATTCTAGT 57.650 37.037 0.00 0.00 0.00 2.57
5077 7690 8.296713 GCTATTGTACTCTTCCTCTCATTCTAG 58.703 40.741 0.00 0.00 0.00 2.43
5078 7691 8.001875 AGCTATTGTACTCTTCCTCTCATTCTA 58.998 37.037 0.00 0.00 0.00 2.10
5096 7709 7.553881 AACGCTTTATAATGTCAGCTATTGT 57.446 32.000 5.57 0.00 0.00 2.71
5548 8876 5.008514 GTGTTTGGTTGGAAAAATGGAATGG 59.991 40.000 0.00 0.00 0.00 3.16
5636 8971 3.940852 GGAACCAAATGGAATTTCATGGC 59.059 43.478 6.42 0.00 44.81 4.40
5688 9033 1.097232 CATATGTGTGTGGGTGCTGG 58.903 55.000 0.00 0.00 0.00 4.85
5690 9035 0.038021 TGCATATGTGTGTGGGTGCT 59.962 50.000 4.29 0.00 33.95 4.40
5707 9052 6.625362 TCTATTTCATCCTGATAGATCGTGC 58.375 40.000 0.00 0.00 29.81 5.34
5708 9053 8.518702 TCTTCTATTTCATCCTGATAGATCGTG 58.481 37.037 0.00 0.00 33.68 4.35
5709 9054 8.642935 TCTTCTATTTCATCCTGATAGATCGT 57.357 34.615 0.00 0.00 33.68 3.73
5710 9055 9.920133 TTTCTTCTATTTCATCCTGATAGATCG 57.080 33.333 0.00 0.00 33.68 3.69
5717 9062 9.439461 TCTAGGATTTCTTCTATTTCATCCTGA 57.561 33.333 8.50 2.60 40.63 3.86
5718 9063 9.487790 GTCTAGGATTTCTTCTATTTCATCCTG 57.512 37.037 8.50 0.60 40.63 3.86
5719 9064 9.218525 TGTCTAGGATTTCTTCTATTTCATCCT 57.781 33.333 4.04 4.04 42.59 3.24
5720 9065 9.267084 GTGTCTAGGATTTCTTCTATTTCATCC 57.733 37.037 0.00 0.00 0.00 3.51
5721 9066 9.823647 TGTGTCTAGGATTTCTTCTATTTCATC 57.176 33.333 0.00 0.00 0.00 2.92
5722 9067 9.606631 GTGTGTCTAGGATTTCTTCTATTTCAT 57.393 33.333 0.00 0.00 0.00 2.57
5723 9068 8.816894 AGTGTGTCTAGGATTTCTTCTATTTCA 58.183 33.333 0.00 0.00 0.00 2.69
5724 9069 9.308318 GAGTGTGTCTAGGATTTCTTCTATTTC 57.692 37.037 0.00 0.00 0.00 2.17
5725 9070 7.976734 CGAGTGTGTCTAGGATTTCTTCTATTT 59.023 37.037 0.00 0.00 0.00 1.40
5726 9071 7.416890 CCGAGTGTGTCTAGGATTTCTTCTATT 60.417 40.741 0.00 0.00 40.66 1.73
5727 9072 6.039941 CCGAGTGTGTCTAGGATTTCTTCTAT 59.960 42.308 0.00 0.00 40.66 1.98
5728 9073 5.357314 CCGAGTGTGTCTAGGATTTCTTCTA 59.643 44.000 0.00 0.00 40.66 2.10
5729 9074 4.158764 CCGAGTGTGTCTAGGATTTCTTCT 59.841 45.833 0.00 0.00 40.66 2.85
5730 9075 4.425520 CCGAGTGTGTCTAGGATTTCTTC 58.574 47.826 0.00 0.00 40.66 2.87
5731 9076 3.368531 GCCGAGTGTGTCTAGGATTTCTT 60.369 47.826 0.00 0.00 40.66 2.52
5732 9077 2.166664 GCCGAGTGTGTCTAGGATTTCT 59.833 50.000 0.00 0.00 40.66 2.52
5733 9078 2.094182 TGCCGAGTGTGTCTAGGATTTC 60.094 50.000 0.00 0.00 40.66 2.17
5734 9079 1.899814 TGCCGAGTGTGTCTAGGATTT 59.100 47.619 0.00 0.00 40.66 2.17
5735 9080 1.478510 CTGCCGAGTGTGTCTAGGATT 59.521 52.381 0.00 0.00 40.66 3.01
5736 9081 1.107114 CTGCCGAGTGTGTCTAGGAT 58.893 55.000 0.00 0.00 40.66 3.24
5737 9082 1.595993 GCTGCCGAGTGTGTCTAGGA 61.596 60.000 0.00 0.00 40.66 2.94
5738 9083 1.153745 GCTGCCGAGTGTGTCTAGG 60.154 63.158 0.00 0.00 41.05 3.02
5739 9084 0.734253 GTGCTGCCGAGTGTGTCTAG 60.734 60.000 0.00 0.00 0.00 2.43
5740 9085 1.289066 GTGCTGCCGAGTGTGTCTA 59.711 57.895 0.00 0.00 0.00 2.59
5741 9086 2.029666 GTGCTGCCGAGTGTGTCT 59.970 61.111 0.00 0.00 0.00 3.41
5742 9087 1.835483 CTTGTGCTGCCGAGTGTGTC 61.835 60.000 0.00 0.00 0.00 3.67
5743 9088 1.889105 CTTGTGCTGCCGAGTGTGT 60.889 57.895 0.00 0.00 0.00 3.72
5744 9089 1.889105 ACTTGTGCTGCCGAGTGTG 60.889 57.895 9.36 0.00 0.00 3.82
5745 9090 1.889105 CACTTGTGCTGCCGAGTGT 60.889 57.895 21.02 4.25 35.84 3.55
5746 9091 1.439353 AACACTTGTGCTGCCGAGTG 61.439 55.000 24.66 24.66 43.81 3.51
5747 9092 1.153168 AACACTTGTGCTGCCGAGT 60.153 52.632 0.00 1.15 0.00 4.18
5748 9093 1.159713 TCAACACTTGTGCTGCCGAG 61.160 55.000 0.00 0.49 0.00 4.63
5749 9094 0.746204 TTCAACACTTGTGCTGCCGA 60.746 50.000 0.00 0.00 0.00 5.54
5750 9095 0.311790 ATTCAACACTTGTGCTGCCG 59.688 50.000 0.00 0.00 0.00 5.69
5751 9096 1.664016 CGATTCAACACTTGTGCTGCC 60.664 52.381 0.00 0.00 0.00 4.85
5752 9097 1.664016 CCGATTCAACACTTGTGCTGC 60.664 52.381 0.10 0.00 0.00 5.25
5753 9098 1.069022 CCCGATTCAACACTTGTGCTG 60.069 52.381 0.10 0.00 0.00 4.41
5754 9099 1.202758 TCCCGATTCAACACTTGTGCT 60.203 47.619 0.10 0.00 0.00 4.40
5755 9100 1.197721 CTCCCGATTCAACACTTGTGC 59.802 52.381 0.10 0.00 0.00 4.57
5756 9101 2.480419 GTCTCCCGATTCAACACTTGTG 59.520 50.000 0.00 0.00 0.00 3.33
5757 9102 2.767505 GTCTCCCGATTCAACACTTGT 58.232 47.619 0.00 0.00 0.00 3.16
5758 9103 1.726791 CGTCTCCCGATTCAACACTTG 59.273 52.381 0.00 0.00 39.56 3.16
5759 9104 1.337823 CCGTCTCCCGATTCAACACTT 60.338 52.381 0.00 0.00 39.56 3.16
5760 9105 0.246635 CCGTCTCCCGATTCAACACT 59.753 55.000 0.00 0.00 39.56 3.55
5761 9106 0.739813 CCCGTCTCCCGATTCAACAC 60.740 60.000 0.00 0.00 39.56 3.32
5762 9107 1.189524 ACCCGTCTCCCGATTCAACA 61.190 55.000 0.00 0.00 39.56 3.33
5763 9108 0.819582 TACCCGTCTCCCGATTCAAC 59.180 55.000 0.00 0.00 39.56 3.18
5764 9109 0.819582 GTACCCGTCTCCCGATTCAA 59.180 55.000 0.00 0.00 39.56 2.69
5765 9110 1.039233 GGTACCCGTCTCCCGATTCA 61.039 60.000 0.00 0.00 39.56 2.57
5766 9111 0.754587 AGGTACCCGTCTCCCGATTC 60.755 60.000 8.74 0.00 39.56 2.52
5767 9112 0.325016 AAGGTACCCGTCTCCCGATT 60.325 55.000 8.74 0.00 39.56 3.34
5768 9113 0.754587 GAAGGTACCCGTCTCCCGAT 60.755 60.000 8.74 0.00 39.56 4.18
5769 9114 1.379044 GAAGGTACCCGTCTCCCGA 60.379 63.158 8.74 0.00 39.56 5.14
5770 9115 1.041447 ATGAAGGTACCCGTCTCCCG 61.041 60.000 8.74 0.00 33.31 5.14
5771 9116 1.685517 GTATGAAGGTACCCGTCTCCC 59.314 57.143 8.74 0.00 33.31 4.30
5772 9117 2.361438 CTGTATGAAGGTACCCGTCTCC 59.639 54.545 8.74 0.17 33.31 3.71
5773 9118 2.223758 GCTGTATGAAGGTACCCGTCTC 60.224 54.545 8.74 1.01 33.31 3.36
5774 9119 1.755380 GCTGTATGAAGGTACCCGTCT 59.245 52.381 8.74 0.04 33.31 4.18
5775 9120 1.479323 TGCTGTATGAAGGTACCCGTC 59.521 52.381 8.74 7.29 32.76 4.79
5776 9121 1.480954 CTGCTGTATGAAGGTACCCGT 59.519 52.381 8.74 0.00 0.00 5.28
5777 9122 1.806623 GCTGCTGTATGAAGGTACCCG 60.807 57.143 8.74 0.00 0.00 5.28
5778 9123 1.475213 GGCTGCTGTATGAAGGTACCC 60.475 57.143 8.74 0.00 0.00 3.69
5779 9124 1.486726 AGGCTGCTGTATGAAGGTACC 59.513 52.381 2.73 2.73 0.00 3.34
5780 9125 2.483889 GGAGGCTGCTGTATGAAGGTAC 60.484 54.545 0.00 0.00 0.00 3.34
5781 9126 1.762957 GGAGGCTGCTGTATGAAGGTA 59.237 52.381 0.00 0.00 0.00 3.08
5782 9127 0.543749 GGAGGCTGCTGTATGAAGGT 59.456 55.000 0.00 0.00 0.00 3.50
5783 9128 0.835941 AGGAGGCTGCTGTATGAAGG 59.164 55.000 8.08 0.00 0.00 3.46
5784 9129 2.706339 AAGGAGGCTGCTGTATGAAG 57.294 50.000 10.05 0.00 0.00 3.02
5785 9130 2.573462 AGAAAGGAGGCTGCTGTATGAA 59.427 45.455 10.05 0.00 0.00 2.57
5786 9131 2.093288 CAGAAAGGAGGCTGCTGTATGA 60.093 50.000 14.96 0.00 0.00 2.15
5787 9132 2.286872 CAGAAAGGAGGCTGCTGTATG 58.713 52.381 10.05 8.04 0.00 2.39
5788 9133 1.912043 ACAGAAAGGAGGCTGCTGTAT 59.088 47.619 10.05 0.00 37.98 2.29
5789 9134 1.276421 GACAGAAAGGAGGCTGCTGTA 59.724 52.381 10.05 0.00 39.68 2.74
5790 9135 0.036022 GACAGAAAGGAGGCTGCTGT 59.964 55.000 10.05 2.91 42.03 4.40
5791 9136 0.324285 AGACAGAAAGGAGGCTGCTG 59.676 55.000 10.05 0.00 35.57 4.41
5792 9137 1.063183 AAGACAGAAAGGAGGCTGCT 58.937 50.000 1.28 1.28 35.57 4.24
5793 9138 1.163554 CAAGACAGAAAGGAGGCTGC 58.836 55.000 0.00 0.00 35.57 5.25
5794 9139 2.557920 ACAAGACAGAAAGGAGGCTG 57.442 50.000 0.00 0.00 38.10 4.85
5795 9140 3.481453 GAAACAAGACAGAAAGGAGGCT 58.519 45.455 0.00 0.00 0.00 4.58
5796 9141 2.554462 GGAAACAAGACAGAAAGGAGGC 59.446 50.000 0.00 0.00 0.00 4.70
5797 9142 3.817647 CAGGAAACAAGACAGAAAGGAGG 59.182 47.826 0.00 0.00 0.00 4.30
5798 9143 3.251972 GCAGGAAACAAGACAGAAAGGAG 59.748 47.826 0.00 0.00 0.00 3.69
5799 9144 3.214328 GCAGGAAACAAGACAGAAAGGA 58.786 45.455 0.00 0.00 0.00 3.36
5800 9145 2.031682 CGCAGGAAACAAGACAGAAAGG 60.032 50.000 0.00 0.00 0.00 3.11
5801 9146 2.614057 ACGCAGGAAACAAGACAGAAAG 59.386 45.455 0.00 0.00 0.00 2.62
5802 9147 2.354510 CACGCAGGAAACAAGACAGAAA 59.645 45.455 0.00 0.00 0.00 2.52
5803 9148 1.939934 CACGCAGGAAACAAGACAGAA 59.060 47.619 0.00 0.00 0.00 3.02
5804 9149 1.138069 TCACGCAGGAAACAAGACAGA 59.862 47.619 0.00 0.00 0.00 3.41
5805 9150 1.528586 CTCACGCAGGAAACAAGACAG 59.471 52.381 0.00 0.00 0.00 3.51
5806 9151 1.134521 ACTCACGCAGGAAACAAGACA 60.135 47.619 0.00 0.00 0.00 3.41
5807 9152 1.261619 CACTCACGCAGGAAACAAGAC 59.738 52.381 0.00 0.00 0.00 3.01
5808 9153 1.134521 ACACTCACGCAGGAAACAAGA 60.135 47.619 0.00 0.00 0.00 3.02
5809 9154 1.003545 CACACTCACGCAGGAAACAAG 60.004 52.381 0.00 0.00 0.00 3.16
5810 9155 1.013596 CACACTCACGCAGGAAACAA 58.986 50.000 0.00 0.00 0.00 2.83
5811 9156 0.107897 ACACACTCACGCAGGAAACA 60.108 50.000 0.00 0.00 0.00 2.83
5812 9157 0.304705 CACACACTCACGCAGGAAAC 59.695 55.000 0.00 0.00 0.00 2.78
5813 9158 0.107897 ACACACACTCACGCAGGAAA 60.108 50.000 0.00 0.00 0.00 3.13
5814 9159 0.529773 GACACACACTCACGCAGGAA 60.530 55.000 0.00 0.00 0.00 3.36
5815 9160 1.067416 GACACACACTCACGCAGGA 59.933 57.895 0.00 0.00 0.00 3.86
5816 9161 0.941463 GAGACACACACTCACGCAGG 60.941 60.000 0.00 0.00 34.87 4.85
5817 9162 0.249031 TGAGACACACACTCACGCAG 60.249 55.000 0.00 0.00 39.10 5.18
5818 9163 0.249031 CTGAGACACACACTCACGCA 60.249 55.000 0.00 0.00 39.10 5.24
5819 9164 0.030773 TCTGAGACACACACTCACGC 59.969 55.000 0.00 0.00 39.10 5.34
5820 9165 2.287849 ACATCTGAGACACACACTCACG 60.288 50.000 0.00 0.00 39.10 4.35
5821 9166 3.055591 CACATCTGAGACACACACTCAC 58.944 50.000 0.00 0.00 39.10 3.51
5822 9167 2.036346 CCACATCTGAGACACACACTCA 59.964 50.000 0.00 0.00 41.26 3.41
5823 9168 2.681706 CCACATCTGAGACACACACTC 58.318 52.381 0.00 0.00 35.26 3.51
5824 9169 1.270518 GCCACATCTGAGACACACACT 60.271 52.381 0.00 0.00 0.00 3.55
5825 9170 1.151668 GCCACATCTGAGACACACAC 58.848 55.000 0.00 0.00 0.00 3.82
5826 9171 0.319813 CGCCACATCTGAGACACACA 60.320 55.000 0.00 0.00 0.00 3.72
5827 9172 1.016130 CCGCCACATCTGAGACACAC 61.016 60.000 0.00 0.00 0.00 3.82
5828 9173 1.293179 CCGCCACATCTGAGACACA 59.707 57.895 0.00 0.00 0.00 3.72
5829 9174 2.103042 GCCGCCACATCTGAGACAC 61.103 63.158 0.00 0.00 0.00 3.67
5830 9175 2.230994 GAGCCGCCACATCTGAGACA 62.231 60.000 0.00 0.00 0.00 3.41
5831 9176 1.520342 GAGCCGCCACATCTGAGAC 60.520 63.158 0.00 0.00 0.00 3.36
5832 9177 1.984026 TGAGCCGCCACATCTGAGA 60.984 57.895 0.00 0.00 0.00 3.27
5833 9178 1.812922 GTGAGCCGCCACATCTGAG 60.813 63.158 7.01 0.00 37.04 3.35
5834 9179 2.230994 GAGTGAGCCGCCACATCTGA 62.231 60.000 12.62 0.00 39.42 3.27
5835 9180 1.812922 GAGTGAGCCGCCACATCTG 60.813 63.158 12.62 0.00 39.42 2.90
5836 9181 2.581354 GAGTGAGCCGCCACATCT 59.419 61.111 12.62 3.57 39.42 2.90
5837 9182 2.887568 CGAGTGAGCCGCCACATC 60.888 66.667 12.62 7.56 39.42 3.06
5838 9183 4.457496 CCGAGTGAGCCGCCACAT 62.457 66.667 12.62 1.19 39.42 3.21
5843 9188 4.373116 TTGTCCCGAGTGAGCCGC 62.373 66.667 0.00 0.00 0.00 6.53
5844 9189 2.125912 CTTGTCCCGAGTGAGCCG 60.126 66.667 0.00 0.00 0.00 5.52
5845 9190 2.266055 CCTTGTCCCGAGTGAGCC 59.734 66.667 0.00 0.00 0.00 4.70
5846 9191 1.827399 TTCCCTTGTCCCGAGTGAGC 61.827 60.000 0.00 0.00 0.00 4.26
5847 9192 0.247736 CTTCCCTTGTCCCGAGTGAG 59.752 60.000 0.00 0.00 0.00 3.51
5848 9193 0.178944 TCTTCCCTTGTCCCGAGTGA 60.179 55.000 0.00 0.00 0.00 3.41
5849 9194 0.247736 CTCTTCCCTTGTCCCGAGTG 59.752 60.000 0.00 0.00 0.00 3.51
5850 9195 0.905337 CCTCTTCCCTTGTCCCGAGT 60.905 60.000 0.00 0.00 0.00 4.18
5851 9196 1.617947 CCCTCTTCCCTTGTCCCGAG 61.618 65.000 0.00 0.00 0.00 4.63
5852 9197 1.612442 CCCTCTTCCCTTGTCCCGA 60.612 63.158 0.00 0.00 0.00 5.14
5853 9198 2.670148 CCCCTCTTCCCTTGTCCCG 61.670 68.421 0.00 0.00 0.00 5.14
5854 9199 2.985116 GCCCCTCTTCCCTTGTCCC 61.985 68.421 0.00 0.00 0.00 4.46
5855 9200 1.916206 GAGCCCCTCTTCCCTTGTCC 61.916 65.000 0.00 0.00 0.00 4.02
5856 9201 1.604915 GAGCCCCTCTTCCCTTGTC 59.395 63.158 0.00 0.00 0.00 3.18
5857 9202 1.925972 GGAGCCCCTCTTCCCTTGT 60.926 63.158 0.00 0.00 0.00 3.16
5858 9203 1.617839 AGGAGCCCCTCTTCCCTTG 60.618 63.158 0.00 0.00 38.86 3.61
5859 9204 2.881371 AGGAGCCCCTCTTCCCTT 59.119 61.111 0.00 0.00 38.86 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.