Multiple sequence alignment - TraesCS3D01G169900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G169900 chr3D 100.000 3365 0 0 1 3365 147837894 147834530 0.000000e+00 6215
1 TraesCS3D01G169900 chr3D 92.516 481 22 6 1 471 180622279 180622755 0.000000e+00 676
2 TraesCS3D01G169900 chr3A 91.750 2303 103 42 734 2988 165320290 165322553 0.000000e+00 3120
3 TraesCS3D01G169900 chr3A 94.505 273 8 3 3034 3304 165327896 165328163 6.720000e-112 414
4 TraesCS3D01G169900 chr3A 98.649 74 0 1 488 560 165319729 165319802 2.720000e-26 130
5 TraesCS3D01G169900 chr3B 92.877 2190 77 25 488 2665 214544363 214546485 0.000000e+00 3107
6 TraesCS3D01G169900 chr3B 91.115 619 31 8 2725 3322 214546759 214547374 0.000000e+00 817
7 TraesCS3D01G169900 chr3B 92.523 107 8 0 365 471 144098944 144099050 1.620000e-33 154
8 TraesCS3D01G169900 chr1A 95.279 466 12 3 2857 3322 34288347 34287892 0.000000e+00 730
9 TraesCS3D01G169900 chr5D 93.946 479 21 1 1 471 549550245 549549767 0.000000e+00 717
10 TraesCS3D01G169900 chr5D 93.096 478 21 4 1 470 512221180 512220707 0.000000e+00 689
11 TraesCS3D01G169900 chr5D 92.693 479 21 4 1 471 7956050 7955578 0.000000e+00 678
12 TraesCS3D01G169900 chr5D 89.813 481 24 7 1 471 411842657 411842192 8.040000e-166 593
13 TraesCS3D01G169900 chr6D 92.902 479 22 3 1 471 441785368 441785842 0.000000e+00 686
14 TraesCS3D01G169900 chr6D 88.441 372 21 9 112 471 27685301 27684940 2.400000e-116 429
15 TraesCS3D01G169900 chr2D 92.693 479 23 3 1 471 176587074 176586600 0.000000e+00 680
16 TraesCS3D01G169900 chr7D 91.176 476 29 3 1 468 90635288 90635758 4.740000e-178 634
17 TraesCS3D01G169900 chr7D 93.119 436 14 5 1 424 532629241 532628810 2.850000e-175 625
18 TraesCS3D01G169900 chr7D 92.381 105 8 0 365 469 552286546 552286442 2.090000e-32 150
19 TraesCS3D01G169900 chr4D 90.269 483 19 8 1 471 25384467 25384933 1.030000e-169 606
20 TraesCS3D01G169900 chr4B 89.516 124 11 1 365 486 552824737 552824614 4.500000e-34 156
21 TraesCS3D01G169900 chr5B 92.523 107 8 0 365 471 140116004 140115898 1.620000e-33 154
22 TraesCS3D01G169900 chr2B 93.204 103 7 0 365 467 104019790 104019688 5.820000e-33 152
23 TraesCS3D01G169900 chr2B 90.991 111 9 1 365 475 757259001 757258892 7.520000e-32 148
24 TraesCS3D01G169900 chr1D 91.589 107 9 0 365 471 468133778 468133884 7.520000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G169900 chr3D 147834530 147837894 3364 True 6215 6215 100.0000 1 3365 1 chr3D.!!$R1 3364
1 TraesCS3D01G169900 chr3A 165319729 165322553 2824 False 1625 3120 95.1995 488 2988 2 chr3A.!!$F2 2500
2 TraesCS3D01G169900 chr3B 214544363 214547374 3011 False 1962 3107 91.9960 488 3322 2 chr3B.!!$F2 2834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.029567 CGCTAGGAGATGTGTCGTCC 59.970 60.0 0.0 0.0 0.00 4.79 F
440 441 0.032540 CCAAGCACAAAACCTGGCTC 59.967 55.0 0.0 0.0 32.38 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2124 0.179121 AACAGCACGTCAGTTCGTCA 60.179 50.0 0.0 0.0 42.27 4.35 R
2403 2794 0.459759 GTAGAAGCGTAGGTGTGGCC 60.460 60.0 0.0 0.0 39.47 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.250116 GATATCATCAACGAGGAGCAGT 57.750 45.455 0.00 0.00 0.00 4.40
22 23 4.626042 GATATCATCAACGAGGAGCAGTT 58.374 43.478 0.00 0.00 0.00 3.16
23 24 2.370281 TCATCAACGAGGAGCAGTTC 57.630 50.000 0.00 0.00 0.00 3.01
24 25 1.895798 TCATCAACGAGGAGCAGTTCT 59.104 47.619 0.00 0.00 0.00 3.01
25 26 2.300152 TCATCAACGAGGAGCAGTTCTT 59.700 45.455 0.00 0.00 0.00 2.52
26 27 2.440539 TCAACGAGGAGCAGTTCTTC 57.559 50.000 0.00 0.00 0.00 2.87
28 29 3.773974 CGAGGAGCAGTTCTTCGC 58.226 61.111 5.86 0.00 46.29 4.70
29 30 1.807573 CGAGGAGCAGTTCTTCGCC 60.808 63.158 5.86 0.00 46.29 5.54
30 31 1.807573 GAGGAGCAGTTCTTCGCCG 60.808 63.158 0.00 0.00 0.00 6.46
31 32 2.214181 GAGGAGCAGTTCTTCGCCGA 62.214 60.000 0.00 0.00 0.00 5.54
32 33 1.807573 GGAGCAGTTCTTCGCCGAG 60.808 63.158 0.00 0.00 0.00 4.63
33 34 1.213013 GAGCAGTTCTTCGCCGAGA 59.787 57.895 0.00 0.00 0.00 4.04
34 35 0.800300 GAGCAGTTCTTCGCCGAGAG 60.800 60.000 0.00 0.00 0.00 3.20
46 47 2.904866 CGAGAGGAGGGCGGAGAG 60.905 72.222 0.00 0.00 0.00 3.20
47 48 2.520741 GAGAGGAGGGCGGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
48 49 3.024356 AGAGGAGGGCGGAGAGGA 61.024 66.667 0.00 0.00 0.00 3.71
49 50 2.042843 GAGGAGGGCGGAGAGGAA 60.043 66.667 0.00 0.00 0.00 3.36
50 51 2.042435 AGGAGGGCGGAGAGGAAG 60.042 66.667 0.00 0.00 0.00 3.46
51 52 3.157949 GGAGGGCGGAGAGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
52 53 2.042843 GAGGGCGGAGAGGAAGGA 60.043 66.667 0.00 0.00 0.00 3.36
53 54 2.042435 AGGGCGGAGAGGAAGGAG 60.042 66.667 0.00 0.00 0.00 3.69
54 55 2.042843 GGGCGGAGAGGAAGGAGA 60.043 66.667 0.00 0.00 0.00 3.71
55 56 1.686110 GGGCGGAGAGGAAGGAGAA 60.686 63.158 0.00 0.00 0.00 2.87
56 57 1.681486 GGGCGGAGAGGAAGGAGAAG 61.681 65.000 0.00 0.00 0.00 2.85
57 58 0.684805 GGCGGAGAGGAAGGAGAAGA 60.685 60.000 0.00 0.00 0.00 2.87
58 59 0.744281 GCGGAGAGGAAGGAGAAGAG 59.256 60.000 0.00 0.00 0.00 2.85
59 60 1.398692 CGGAGAGGAAGGAGAAGAGG 58.601 60.000 0.00 0.00 0.00 3.69
60 61 1.064314 CGGAGAGGAAGGAGAAGAGGA 60.064 57.143 0.00 0.00 0.00 3.71
61 62 2.621929 CGGAGAGGAAGGAGAAGAGGAA 60.622 54.545 0.00 0.00 0.00 3.36
62 63 3.031013 GGAGAGGAAGGAGAAGAGGAAG 58.969 54.545 0.00 0.00 0.00 3.46
63 64 3.031013 GAGAGGAAGGAGAAGAGGAAGG 58.969 54.545 0.00 0.00 0.00 3.46
64 65 2.657459 AGAGGAAGGAGAAGAGGAAGGA 59.343 50.000 0.00 0.00 0.00 3.36
65 66 3.031013 GAGGAAGGAGAAGAGGAAGGAG 58.969 54.545 0.00 0.00 0.00 3.69
66 67 1.484653 GGAAGGAGAAGAGGAAGGAGC 59.515 57.143 0.00 0.00 0.00 4.70
67 68 1.136110 GAAGGAGAAGAGGAAGGAGCG 59.864 57.143 0.00 0.00 0.00 5.03
68 69 0.333312 AGGAGAAGAGGAAGGAGCGA 59.667 55.000 0.00 0.00 0.00 4.93
69 70 0.744281 GGAGAAGAGGAAGGAGCGAG 59.256 60.000 0.00 0.00 0.00 5.03
70 71 0.102300 GAGAAGAGGAAGGAGCGAGC 59.898 60.000 0.00 0.00 0.00 5.03
71 72 1.142965 GAAGAGGAAGGAGCGAGCC 59.857 63.158 0.00 0.00 0.00 4.70
72 73 2.621371 GAAGAGGAAGGAGCGAGCCG 62.621 65.000 0.00 0.00 0.00 5.52
89 90 4.327885 GCCTATCGCGAGGACAAG 57.672 61.111 16.66 6.59 39.15 3.16
90 91 1.951631 GCCTATCGCGAGGACAAGC 60.952 63.158 16.66 7.76 39.15 4.01
96 97 2.733593 GCGAGGACAAGCGAACGT 60.734 61.111 0.00 0.00 0.00 3.99
97 98 3.000080 GCGAGGACAAGCGAACGTG 62.000 63.158 0.00 0.00 0.00 4.49
98 99 2.372690 CGAGGACAAGCGAACGTGG 61.373 63.158 0.00 0.00 0.00 4.94
99 100 1.006571 GAGGACAAGCGAACGTGGA 60.007 57.895 0.00 0.00 0.00 4.02
100 101 0.599204 GAGGACAAGCGAACGTGGAA 60.599 55.000 0.00 0.00 0.00 3.53
101 102 0.600255 AGGACAAGCGAACGTGGAAG 60.600 55.000 0.00 0.00 0.00 3.46
102 103 1.566018 GGACAAGCGAACGTGGAAGG 61.566 60.000 0.00 0.00 0.00 3.46
103 104 2.171489 GACAAGCGAACGTGGAAGGC 62.171 60.000 0.00 0.00 0.00 4.35
104 105 3.041940 AAGCGAACGTGGAAGGCG 61.042 61.111 0.00 0.00 0.00 5.52
107 108 3.110178 CGAACGTGGAAGGCGGTC 61.110 66.667 0.00 0.00 42.05 4.79
108 109 3.110178 GAACGTGGAAGGCGGTCG 61.110 66.667 0.00 0.00 36.32 4.79
111 112 4.124351 CGTGGAAGGCGGTCGCTA 62.124 66.667 15.04 0.00 41.60 4.26
112 113 2.263540 GTGGAAGGCGGTCGCTAA 59.736 61.111 15.04 0.00 41.60 3.09
113 114 1.375013 GTGGAAGGCGGTCGCTAAA 60.375 57.895 15.04 0.00 41.60 1.85
114 115 0.743345 GTGGAAGGCGGTCGCTAAAT 60.743 55.000 15.04 0.00 41.60 1.40
115 116 0.825410 TGGAAGGCGGTCGCTAAATA 59.175 50.000 15.04 0.00 41.60 1.40
116 117 1.215244 GGAAGGCGGTCGCTAAATAC 58.785 55.000 15.04 0.00 41.60 1.89
117 118 1.472026 GGAAGGCGGTCGCTAAATACA 60.472 52.381 15.04 0.00 41.60 2.29
118 119 2.273557 GAAGGCGGTCGCTAAATACAA 58.726 47.619 15.04 0.00 41.60 2.41
119 120 1.648504 AGGCGGTCGCTAAATACAAC 58.351 50.000 15.04 0.00 41.60 3.32
120 121 1.066716 AGGCGGTCGCTAAATACAACA 60.067 47.619 15.04 0.00 41.60 3.33
121 122 1.937899 GGCGGTCGCTAAATACAACAT 59.062 47.619 15.04 0.00 41.60 2.71
122 123 2.286184 GGCGGTCGCTAAATACAACATG 60.286 50.000 15.04 0.00 41.60 3.21
123 124 2.286184 GCGGTCGCTAAATACAACATGG 60.286 50.000 8.20 0.00 38.26 3.66
124 125 2.286184 CGGTCGCTAAATACAACATGGC 60.286 50.000 0.00 0.00 0.00 4.40
125 126 2.286184 GGTCGCTAAATACAACATGGCG 60.286 50.000 0.00 0.00 42.00 5.69
126 127 1.329292 TCGCTAAATACAACATGGCGC 59.671 47.619 0.00 0.00 40.73 6.53
127 128 1.330521 CGCTAAATACAACATGGCGCT 59.669 47.619 7.64 0.00 35.13 5.92
128 129 2.542178 CGCTAAATACAACATGGCGCTA 59.458 45.455 7.64 0.00 35.13 4.26
129 130 3.362986 CGCTAAATACAACATGGCGCTAG 60.363 47.826 7.64 0.00 35.13 3.42
130 131 3.058914 GCTAAATACAACATGGCGCTAGG 60.059 47.826 7.64 5.30 0.00 3.02
131 132 3.275617 AAATACAACATGGCGCTAGGA 57.724 42.857 13.72 0.00 0.00 2.94
132 133 2.533266 ATACAACATGGCGCTAGGAG 57.467 50.000 13.72 6.76 0.00 3.69
133 134 1.480789 TACAACATGGCGCTAGGAGA 58.519 50.000 13.72 0.00 0.00 3.71
134 135 0.833287 ACAACATGGCGCTAGGAGAT 59.167 50.000 13.72 0.00 0.00 2.75
135 136 1.224075 CAACATGGCGCTAGGAGATG 58.776 55.000 13.72 0.25 0.00 2.90
136 137 0.833287 AACATGGCGCTAGGAGATGT 59.167 50.000 13.72 1.01 0.00 3.06
137 138 0.105593 ACATGGCGCTAGGAGATGTG 59.894 55.000 13.72 0.00 0.00 3.21
138 139 0.105593 CATGGCGCTAGGAGATGTGT 59.894 55.000 7.64 0.00 0.00 3.72
139 140 0.390860 ATGGCGCTAGGAGATGTGTC 59.609 55.000 7.64 0.00 0.00 3.67
140 141 1.299468 GGCGCTAGGAGATGTGTCG 60.299 63.158 7.64 0.00 0.00 4.35
141 142 1.433879 GCGCTAGGAGATGTGTCGT 59.566 57.895 0.00 0.00 0.00 4.34
142 143 0.592754 GCGCTAGGAGATGTGTCGTC 60.593 60.000 0.00 0.00 0.00 4.20
143 144 0.029567 CGCTAGGAGATGTGTCGTCC 59.970 60.000 0.00 0.00 0.00 4.79
144 145 1.394618 GCTAGGAGATGTGTCGTCCT 58.605 55.000 0.00 0.00 43.43 3.85
145 146 1.066303 GCTAGGAGATGTGTCGTCCTG 59.934 57.143 0.19 0.00 41.05 3.86
146 147 1.678627 CTAGGAGATGTGTCGTCCTGG 59.321 57.143 0.19 0.00 41.05 4.45
147 148 0.972983 AGGAGATGTGTCGTCCTGGG 60.973 60.000 0.00 0.00 39.36 4.45
148 149 0.970937 GGAGATGTGTCGTCCTGGGA 60.971 60.000 0.00 0.00 0.00 4.37
149 150 0.173708 GAGATGTGTCGTCCTGGGAC 59.826 60.000 9.55 9.55 41.40 4.46
150 151 0.251832 AGATGTGTCGTCCTGGGACT 60.252 55.000 16.44 0.00 42.54 3.85
151 152 0.173708 GATGTGTCGTCCTGGGACTC 59.826 60.000 16.44 10.38 42.54 3.36
152 153 1.258445 ATGTGTCGTCCTGGGACTCC 61.258 60.000 16.44 8.04 42.54 3.85
153 154 2.283676 TGTCGTCCTGGGACTCCC 60.284 66.667 16.44 7.25 45.71 4.30
162 163 4.267503 GGGACTCCCGCGACGATC 62.268 72.222 8.23 0.00 32.13 3.69
163 164 4.609247 GGACTCCCGCGACGATCG 62.609 72.222 14.88 14.88 43.89 3.69
164 165 4.609247 GACTCCCGCGACGATCGG 62.609 72.222 20.98 2.47 46.05 4.18
166 167 4.189188 CTCCCGCGACGATCGGTT 62.189 66.667 20.98 0.00 45.09 4.44
167 168 4.183686 TCCCGCGACGATCGGTTC 62.184 66.667 20.98 7.89 45.09 3.62
169 170 4.189188 CCGCGACGATCGGTTCCT 62.189 66.667 20.98 0.00 40.84 3.36
170 171 2.202570 CGCGACGATCGGTTCCTT 60.203 61.111 20.98 0.00 40.84 3.36
171 172 2.505498 CGCGACGATCGGTTCCTTG 61.505 63.158 20.98 2.68 40.84 3.61
172 173 1.153901 GCGACGATCGGTTCCTTGA 60.154 57.895 20.98 0.00 40.84 3.02
173 174 1.411493 GCGACGATCGGTTCCTTGAC 61.411 60.000 20.98 0.00 40.84 3.18
174 175 1.132199 CGACGATCGGTTCCTTGACG 61.132 60.000 20.98 6.77 36.00 4.35
175 176 1.411493 GACGATCGGTTCCTTGACGC 61.411 60.000 20.98 0.00 0.00 5.19
176 177 2.165301 CGATCGGTTCCTTGACGCC 61.165 63.158 7.38 0.00 0.00 5.68
177 178 1.218316 GATCGGTTCCTTGACGCCT 59.782 57.895 0.00 0.00 0.00 5.52
178 179 0.458669 GATCGGTTCCTTGACGCCTA 59.541 55.000 0.00 0.00 0.00 3.93
179 180 1.068741 GATCGGTTCCTTGACGCCTAT 59.931 52.381 0.00 0.00 0.00 2.57
180 181 0.174845 TCGGTTCCTTGACGCCTATG 59.825 55.000 0.00 0.00 0.00 2.23
181 182 1.429148 CGGTTCCTTGACGCCTATGC 61.429 60.000 0.00 0.00 0.00 3.14
182 183 0.107654 GGTTCCTTGACGCCTATGCT 60.108 55.000 0.00 0.00 34.43 3.79
183 184 1.291132 GTTCCTTGACGCCTATGCTC 58.709 55.000 0.00 0.00 34.43 4.26
184 185 0.901827 TTCCTTGACGCCTATGCTCA 59.098 50.000 0.00 0.00 34.43 4.26
185 186 0.901827 TCCTTGACGCCTATGCTCAA 59.098 50.000 5.35 5.35 35.13 3.02
186 187 1.277842 TCCTTGACGCCTATGCTCAAA 59.722 47.619 6.43 0.00 35.61 2.69
187 188 1.398390 CCTTGACGCCTATGCTCAAAC 59.602 52.381 6.43 0.00 35.61 2.93
188 189 1.061131 CTTGACGCCTATGCTCAAACG 59.939 52.381 6.43 0.00 35.61 3.60
189 190 0.037697 TGACGCCTATGCTCAAACGT 60.038 50.000 0.00 0.00 36.30 3.99
190 191 0.645868 GACGCCTATGCTCAAACGTC 59.354 55.000 0.00 0.00 42.36 4.34
191 192 0.246635 ACGCCTATGCTCAAACGTCT 59.753 50.000 0.00 0.00 34.43 4.18
192 193 0.647410 CGCCTATGCTCAAACGTCTG 59.353 55.000 0.00 0.00 34.43 3.51
193 194 1.735700 CGCCTATGCTCAAACGTCTGA 60.736 52.381 0.00 0.00 34.43 3.27
194 195 1.929836 GCCTATGCTCAAACGTCTGAG 59.070 52.381 14.68 14.68 44.82 3.35
195 196 2.544685 CCTATGCTCAAACGTCTGAGG 58.455 52.381 20.01 3.66 42.68 3.86
196 197 2.166459 CCTATGCTCAAACGTCTGAGGA 59.834 50.000 20.01 17.99 46.24 3.71
197 198 2.376808 ATGCTCAAACGTCTGAGGAG 57.623 50.000 20.01 8.87 45.52 3.69
198 199 0.318441 TGCTCAAACGTCTGAGGAGG 59.682 55.000 20.01 0.00 42.68 4.30
199 200 0.603569 GCTCAAACGTCTGAGGAGGA 59.396 55.000 20.01 0.00 42.68 3.71
200 201 1.670380 GCTCAAACGTCTGAGGAGGAC 60.670 57.143 20.01 0.00 42.68 3.85
201 202 1.613925 CTCAAACGTCTGAGGAGGACA 59.386 52.381 11.19 0.00 39.39 4.02
202 203 2.232452 CTCAAACGTCTGAGGAGGACAT 59.768 50.000 11.19 0.00 39.39 3.06
203 204 2.231478 TCAAACGTCTGAGGAGGACATC 59.769 50.000 4.12 0.00 33.73 3.06
204 205 1.924731 AACGTCTGAGGAGGACATCA 58.075 50.000 4.12 0.00 35.52 3.07
205 206 2.151502 ACGTCTGAGGAGGACATCAT 57.848 50.000 4.12 0.00 36.26 2.45
206 207 2.028130 ACGTCTGAGGAGGACATCATC 58.972 52.381 4.12 0.00 39.23 2.92
207 208 1.001924 CGTCTGAGGAGGACATCATCG 60.002 57.143 0.00 0.00 41.73 3.84
208 209 2.302260 GTCTGAGGAGGACATCATCGA 58.698 52.381 0.00 0.00 41.73 3.59
209 210 2.293122 GTCTGAGGAGGACATCATCGAG 59.707 54.545 0.00 0.00 41.73 4.04
210 211 2.173569 TCTGAGGAGGACATCATCGAGA 59.826 50.000 0.00 0.00 41.73 4.04
211 212 2.293122 CTGAGGAGGACATCATCGAGAC 59.707 54.545 0.00 0.00 41.73 3.36
212 213 2.302260 GAGGAGGACATCATCGAGACA 58.698 52.381 0.00 0.00 0.00 3.41
213 214 2.293122 GAGGAGGACATCATCGAGACAG 59.707 54.545 0.00 0.00 0.00 3.51
214 215 2.092158 AGGAGGACATCATCGAGACAGA 60.092 50.000 0.00 0.00 0.00 3.41
215 216 2.293122 GGAGGACATCATCGAGACAGAG 59.707 54.545 0.00 0.00 0.00 3.35
216 217 2.948979 GAGGACATCATCGAGACAGAGT 59.051 50.000 0.00 0.00 0.00 3.24
217 218 2.948979 AGGACATCATCGAGACAGAGTC 59.051 50.000 0.00 0.00 0.00 3.36
218 219 2.034053 GGACATCATCGAGACAGAGTCC 59.966 54.545 8.23 8.23 37.70 3.85
219 220 1.673400 ACATCATCGAGACAGAGTCCG 59.327 52.381 0.00 0.00 32.18 4.79
220 221 1.943340 CATCATCGAGACAGAGTCCGA 59.057 52.381 11.18 11.18 38.66 4.55
221 222 1.657822 TCATCGAGACAGAGTCCGAG 58.342 55.000 13.23 8.04 38.11 4.63
222 223 1.066071 TCATCGAGACAGAGTCCGAGT 60.066 52.381 13.23 0.00 38.11 4.18
223 224 1.329292 CATCGAGACAGAGTCCGAGTC 59.671 57.143 13.23 0.00 38.11 3.36
224 225 0.320697 TCGAGACAGAGTCCGAGTCA 59.679 55.000 6.01 0.00 33.17 3.41
225 226 0.724549 CGAGACAGAGTCCGAGTCAG 59.275 60.000 6.01 0.16 34.80 3.51
226 227 1.673329 CGAGACAGAGTCCGAGTCAGA 60.673 57.143 6.01 0.00 34.80 3.27
227 228 2.006888 GAGACAGAGTCCGAGTCAGAG 58.993 57.143 6.01 0.00 34.80 3.35
228 229 1.626321 AGACAGAGTCCGAGTCAGAGA 59.374 52.381 6.01 0.00 34.80 3.10
229 230 2.039216 AGACAGAGTCCGAGTCAGAGAA 59.961 50.000 6.01 0.00 34.80 2.87
230 231 3.013921 GACAGAGTCCGAGTCAGAGAAT 58.986 50.000 6.01 0.00 32.68 2.40
231 232 2.752354 ACAGAGTCCGAGTCAGAGAATG 59.248 50.000 6.01 0.00 0.00 2.67
232 233 3.013219 CAGAGTCCGAGTCAGAGAATGA 58.987 50.000 6.01 0.00 34.79 2.57
245 246 6.665474 TCAGAGAATGACGAGTAGTAGTTC 57.335 41.667 0.00 0.00 31.12 3.01
246 247 6.408035 TCAGAGAATGACGAGTAGTAGTTCT 58.592 40.000 0.00 3.45 38.52 3.01
247 248 7.554211 TCAGAGAATGACGAGTAGTAGTTCTA 58.446 38.462 0.00 0.00 37.02 2.10
248 249 8.205512 TCAGAGAATGACGAGTAGTAGTTCTAT 58.794 37.037 0.00 0.00 37.02 1.98
249 250 8.279800 CAGAGAATGACGAGTAGTAGTTCTATG 58.720 40.741 9.06 9.06 38.28 2.23
250 251 7.988599 AGAGAATGACGAGTAGTAGTTCTATGT 59.011 37.037 0.00 0.00 37.02 2.29
251 252 7.921787 AGAATGACGAGTAGTAGTTCTATGTG 58.078 38.462 0.00 0.00 35.91 3.21
252 253 7.769507 AGAATGACGAGTAGTAGTTCTATGTGA 59.230 37.037 0.00 0.00 35.91 3.58
253 254 6.905544 TGACGAGTAGTAGTTCTATGTGAG 57.094 41.667 0.00 0.00 0.00 3.51
254 255 6.637657 TGACGAGTAGTAGTTCTATGTGAGA 58.362 40.000 0.00 0.00 0.00 3.27
255 256 6.757478 TGACGAGTAGTAGTTCTATGTGAGAG 59.243 42.308 0.00 0.00 34.93 3.20
256 257 6.642430 ACGAGTAGTAGTTCTATGTGAGAGT 58.358 40.000 0.00 0.00 34.93 3.24
257 258 7.780064 ACGAGTAGTAGTTCTATGTGAGAGTA 58.220 38.462 0.00 0.00 34.93 2.59
258 259 8.423349 ACGAGTAGTAGTTCTATGTGAGAGTAT 58.577 37.037 0.00 0.00 34.93 2.12
259 260 8.705134 CGAGTAGTAGTTCTATGTGAGAGTATG 58.295 40.741 0.00 0.00 34.93 2.39
260 261 9.550406 GAGTAGTAGTTCTATGTGAGAGTATGT 57.450 37.037 0.00 0.00 34.93 2.29
268 269 9.900710 GTTCTATGTGAGAGTATGTATTGTAGG 57.099 37.037 0.00 0.00 34.93 3.18
269 270 9.862149 TTCTATGTGAGAGTATGTATTGTAGGA 57.138 33.333 0.00 0.00 34.93 2.94
270 271 9.508642 TCTATGTGAGAGTATGTATTGTAGGAG 57.491 37.037 0.00 0.00 0.00 3.69
271 272 9.508642 CTATGTGAGAGTATGTATTGTAGGAGA 57.491 37.037 0.00 0.00 0.00 3.71
272 273 8.768501 ATGTGAGAGTATGTATTGTAGGAGAA 57.231 34.615 0.00 0.00 0.00 2.87
273 274 8.226819 TGTGAGAGTATGTATTGTAGGAGAAG 57.773 38.462 0.00 0.00 0.00 2.85
274 275 8.053355 TGTGAGAGTATGTATTGTAGGAGAAGA 58.947 37.037 0.00 0.00 0.00 2.87
275 276 8.347035 GTGAGAGTATGTATTGTAGGAGAAGAC 58.653 40.741 0.00 0.00 0.00 3.01
276 277 8.275758 TGAGAGTATGTATTGTAGGAGAAGACT 58.724 37.037 0.00 0.00 0.00 3.24
277 278 9.781633 GAGAGTATGTATTGTAGGAGAAGACTA 57.218 37.037 0.00 0.00 0.00 2.59
278 279 9.787435 AGAGTATGTATTGTAGGAGAAGACTAG 57.213 37.037 0.00 0.00 0.00 2.57
279 280 9.781633 GAGTATGTATTGTAGGAGAAGACTAGA 57.218 37.037 0.00 0.00 0.00 2.43
291 292 8.836268 AGGAGAAGACTAGAACTATATGTACG 57.164 38.462 0.00 0.00 0.00 3.67
292 293 7.388500 AGGAGAAGACTAGAACTATATGTACGC 59.612 40.741 0.00 0.00 0.00 4.42
293 294 7.119605 AGAAGACTAGAACTATATGTACGCG 57.880 40.000 3.53 3.53 0.00 6.01
294 295 5.859521 AGACTAGAACTATATGTACGCGG 57.140 43.478 12.47 0.00 0.00 6.46
295 296 5.303971 AGACTAGAACTATATGTACGCGGT 58.696 41.667 12.47 0.00 0.00 5.68
296 297 5.762218 AGACTAGAACTATATGTACGCGGTT 59.238 40.000 12.47 1.23 0.00 4.44
297 298 5.995055 ACTAGAACTATATGTACGCGGTTC 58.005 41.667 12.47 11.63 34.95 3.62
298 299 5.762218 ACTAGAACTATATGTACGCGGTTCT 59.238 40.000 21.02 21.02 43.44 3.01
299 300 6.931281 ACTAGAACTATATGTACGCGGTTCTA 59.069 38.462 21.01 21.01 41.92 2.10
300 301 6.814506 AGAACTATATGTACGCGGTTCTAT 57.185 37.500 17.55 9.23 40.65 1.98
301 302 6.840075 AGAACTATATGTACGCGGTTCTATC 58.160 40.000 17.55 2.19 40.65 2.08
302 303 5.213913 ACTATATGTACGCGGTTCTATCG 57.786 43.478 12.47 1.36 0.00 2.92
303 304 4.692625 ACTATATGTACGCGGTTCTATCGT 59.307 41.667 12.47 1.99 39.88 3.73
304 305 5.869344 ACTATATGTACGCGGTTCTATCGTA 59.131 40.000 12.47 0.00 37.61 3.43
305 306 3.532892 ATGTACGCGGTTCTATCGTAG 57.467 47.619 12.47 0.00 39.03 3.51
306 307 2.549926 TGTACGCGGTTCTATCGTAGA 58.450 47.619 12.47 0.00 45.75 2.59
307 308 2.935849 TGTACGCGGTTCTATCGTAGAA 59.064 45.455 12.47 4.12 43.58 2.10
343 344 8.453238 TGAGACTATGTATTGTAGGAGAAGAC 57.547 38.462 0.00 0.00 0.00 3.01
344 345 8.275758 TGAGACTATGTATTGTAGGAGAAGACT 58.724 37.037 0.00 0.00 0.00 3.24
345 346 9.127277 GAGACTATGTATTGTAGGAGAAGACTT 57.873 37.037 0.00 0.00 0.00 3.01
346 347 8.908903 AGACTATGTATTGTAGGAGAAGACTTG 58.091 37.037 0.00 0.00 0.00 3.16
347 348 8.824756 ACTATGTATTGTAGGAGAAGACTTGA 57.175 34.615 0.00 0.00 0.00 3.02
348 349 9.256228 ACTATGTATTGTAGGAGAAGACTTGAA 57.744 33.333 0.00 0.00 0.00 2.69
349 350 9.522804 CTATGTATTGTAGGAGAAGACTTGAAC 57.477 37.037 0.00 0.00 0.00 3.18
350 351 7.540474 TGTATTGTAGGAGAAGACTTGAACT 57.460 36.000 0.00 0.00 0.00 3.01
351 352 8.645814 TGTATTGTAGGAGAAGACTTGAACTA 57.354 34.615 0.00 0.00 0.00 2.24
352 353 9.256228 TGTATTGTAGGAGAAGACTTGAACTAT 57.744 33.333 0.00 0.00 0.00 2.12
353 354 9.522804 GTATTGTAGGAGAAGACTTGAACTATG 57.477 37.037 0.00 0.00 0.00 2.23
354 355 7.540474 TTGTAGGAGAAGACTTGAACTATGT 57.460 36.000 0.00 0.00 0.00 2.29
355 356 8.645814 TTGTAGGAGAAGACTTGAACTATGTA 57.354 34.615 0.00 0.00 0.00 2.29
356 357 8.053026 TGTAGGAGAAGACTTGAACTATGTAC 57.947 38.462 0.00 0.00 0.00 2.90
357 358 7.668469 TGTAGGAGAAGACTTGAACTATGTACA 59.332 37.037 0.00 0.00 0.00 2.90
358 359 7.540474 AGGAGAAGACTTGAACTATGTACAA 57.460 36.000 0.00 0.00 0.00 2.41
359 360 7.963532 AGGAGAAGACTTGAACTATGTACAAA 58.036 34.615 0.00 0.00 0.00 2.83
360 361 8.429641 AGGAGAAGACTTGAACTATGTACAAAA 58.570 33.333 0.00 0.00 0.00 2.44
361 362 9.220767 GGAGAAGACTTGAACTATGTACAAAAT 57.779 33.333 0.00 0.00 0.00 1.82
369 370 9.507280 CTTGAACTATGTACAAAATATTGCTGG 57.493 33.333 0.00 0.00 40.34 4.85
370 371 8.800370 TGAACTATGTACAAAATATTGCTGGA 57.200 30.769 0.00 0.00 40.34 3.86
371 372 8.892723 TGAACTATGTACAAAATATTGCTGGAG 58.107 33.333 0.00 0.00 40.34 3.86
372 373 7.264373 ACTATGTACAAAATATTGCTGGAGC 57.736 36.000 0.00 0.00 40.34 4.70
373 374 4.614555 TGTACAAAATATTGCTGGAGCG 57.385 40.909 0.00 0.00 45.83 5.03
374 375 4.257731 TGTACAAAATATTGCTGGAGCGA 58.742 39.130 0.00 0.00 45.83 4.93
375 376 3.764885 ACAAAATATTGCTGGAGCGAC 57.235 42.857 0.00 0.00 45.83 5.19
376 377 3.347216 ACAAAATATTGCTGGAGCGACT 58.653 40.909 0.00 0.00 45.83 4.18
377 378 3.375299 ACAAAATATTGCTGGAGCGACTC 59.625 43.478 0.00 0.00 45.83 3.36
378 379 1.858091 AATATTGCTGGAGCGACTCG 58.142 50.000 0.00 0.00 45.83 4.18
379 380 0.032678 ATATTGCTGGAGCGACTCGG 59.967 55.000 0.00 0.00 45.83 4.63
380 381 2.016393 TATTGCTGGAGCGACTCGGG 62.016 60.000 0.00 0.00 45.83 5.14
390 391 2.585247 GACTCGGGCGCGCTTTAT 60.585 61.111 32.29 13.16 0.00 1.40
391 392 2.125269 ACTCGGGCGCGCTTTATT 60.125 55.556 32.29 10.26 0.00 1.40
392 393 1.702491 GACTCGGGCGCGCTTTATTT 61.702 55.000 32.29 11.29 0.00 1.40
393 394 1.303091 ACTCGGGCGCGCTTTATTTT 61.303 50.000 32.29 6.70 0.00 1.82
394 395 0.861450 CTCGGGCGCGCTTTATTTTG 60.861 55.000 32.29 11.57 0.00 2.44
395 396 2.504653 CGGGCGCGCTTTATTTTGC 61.505 57.895 32.29 10.56 0.00 3.68
401 402 3.383861 GCTTTATTTTGCGGCGGC 58.616 55.556 9.78 9.68 40.52 6.53
402 403 2.164663 GCTTTATTTTGCGGCGGCC 61.165 57.895 14.25 9.54 38.85 6.13
431 432 4.263209 CGCACCGCCAAGCACAAA 62.263 61.111 0.00 0.00 0.00 2.83
432 433 2.105930 GCACCGCCAAGCACAAAA 59.894 55.556 0.00 0.00 0.00 2.44
433 434 2.237066 GCACCGCCAAGCACAAAAC 61.237 57.895 0.00 0.00 0.00 2.43
434 435 1.591327 CACCGCCAAGCACAAAACC 60.591 57.895 0.00 0.00 0.00 3.27
435 436 1.756561 ACCGCCAAGCACAAAACCT 60.757 52.632 0.00 0.00 0.00 3.50
436 437 1.300080 CCGCCAAGCACAAAACCTG 60.300 57.895 0.00 0.00 0.00 4.00
437 438 1.300080 CGCCAAGCACAAAACCTGG 60.300 57.895 0.00 0.00 0.00 4.45
438 439 1.595109 GCCAAGCACAAAACCTGGC 60.595 57.895 0.00 0.00 0.00 4.85
439 440 2.031674 GCCAAGCACAAAACCTGGCT 62.032 55.000 4.16 0.00 37.90 4.75
440 441 0.032540 CCAAGCACAAAACCTGGCTC 59.967 55.000 0.00 0.00 32.38 4.70
441 442 0.746063 CAAGCACAAAACCTGGCTCA 59.254 50.000 0.00 0.00 32.38 4.26
442 443 0.746659 AAGCACAAAACCTGGCTCAC 59.253 50.000 0.00 0.00 32.38 3.51
443 444 1.109323 AGCACAAAACCTGGCTCACC 61.109 55.000 0.00 0.00 28.74 4.02
444 445 2.041153 CACAAAACCTGGCTCACCC 58.959 57.895 0.00 0.00 33.59 4.61
445 446 1.528309 ACAAAACCTGGCTCACCCG 60.528 57.895 0.00 0.00 35.87 5.28
446 447 1.228124 CAAAACCTGGCTCACCCGA 60.228 57.895 0.00 0.00 35.87 5.14
447 448 1.228154 AAAACCTGGCTCACCCGAC 60.228 57.895 0.00 0.00 35.87 4.79
448 449 3.530910 AAACCTGGCTCACCCGACG 62.531 63.158 0.00 0.00 35.87 5.12
454 455 4.203076 GCTCACCCGACGCGGTAT 62.203 66.667 12.47 0.00 46.80 2.73
455 456 2.025727 CTCACCCGACGCGGTATC 59.974 66.667 12.47 0.00 46.80 2.24
456 457 3.480225 CTCACCCGACGCGGTATCC 62.480 68.421 12.47 0.00 46.80 2.59
457 458 3.524606 CACCCGACGCGGTATCCT 61.525 66.667 12.47 0.00 46.80 3.24
458 459 3.524606 ACCCGACGCGGTATCCTG 61.525 66.667 12.47 3.72 46.80 3.86
459 460 3.214123 CCCGACGCGGTATCCTGA 61.214 66.667 12.47 0.00 46.80 3.86
460 461 2.561956 CCCGACGCGGTATCCTGAT 61.562 63.158 12.47 0.00 46.80 2.90
461 462 1.362717 CCGACGCGGTATCCTGATT 59.637 57.895 12.47 0.00 42.73 2.57
462 463 0.249322 CCGACGCGGTATCCTGATTT 60.249 55.000 12.47 0.00 42.73 2.17
463 464 1.567504 CGACGCGGTATCCTGATTTT 58.432 50.000 12.47 0.00 0.00 1.82
464 465 1.931172 CGACGCGGTATCCTGATTTTT 59.069 47.619 12.47 0.00 0.00 1.94
465 466 3.117794 CGACGCGGTATCCTGATTTTTA 58.882 45.455 12.47 0.00 0.00 1.52
466 467 3.181774 CGACGCGGTATCCTGATTTTTAG 59.818 47.826 12.47 0.00 0.00 1.85
467 468 2.870411 ACGCGGTATCCTGATTTTTAGC 59.130 45.455 12.47 0.00 0.00 3.09
468 469 2.096909 CGCGGTATCCTGATTTTTAGCG 60.097 50.000 0.00 0.00 38.27 4.26
469 470 3.521524 CGGTATCCTGATTTTTAGCGC 57.478 47.619 0.00 0.00 0.00 5.92
470 471 2.096909 CGGTATCCTGATTTTTAGCGCG 60.097 50.000 0.00 0.00 0.00 6.86
471 472 2.223377 GGTATCCTGATTTTTAGCGCGG 59.777 50.000 8.83 0.00 0.00 6.46
472 473 0.663153 ATCCTGATTTTTAGCGCGGC 59.337 50.000 8.83 0.00 0.00 6.53
473 474 0.392461 TCCTGATTTTTAGCGCGGCT 60.392 50.000 8.83 8.38 43.41 5.52
474 475 0.248215 CCTGATTTTTAGCGCGGCTG 60.248 55.000 8.83 0.00 40.10 4.85
475 476 0.447801 CTGATTTTTAGCGCGGCTGT 59.552 50.000 8.83 0.00 40.10 4.40
476 477 0.878416 TGATTTTTAGCGCGGCTGTT 59.122 45.000 8.83 0.00 40.10 3.16
477 478 1.259316 GATTTTTAGCGCGGCTGTTG 58.741 50.000 8.83 0.00 40.10 3.33
478 479 0.109319 ATTTTTAGCGCGGCTGTTGG 60.109 50.000 8.83 0.00 40.10 3.77
479 480 1.167155 TTTTTAGCGCGGCTGTTGGA 61.167 50.000 8.83 0.00 40.10 3.53
480 481 1.573829 TTTTAGCGCGGCTGTTGGAG 61.574 55.000 8.83 0.00 40.10 3.86
481 482 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
482 483 2.835701 TTAGCGCGGCTGTTGGAGAG 62.836 60.000 8.83 0.00 40.10 3.20
485 486 4.400961 GCGGCTGTTGGAGAGGCT 62.401 66.667 0.00 0.00 33.89 4.58
486 487 3.019003 GCGGCTGTTGGAGAGGCTA 62.019 63.158 0.00 0.00 33.89 3.93
511 512 3.377172 ACATTAGAGTAACAATTGCCGGC 59.623 43.478 22.73 22.73 0.00 6.13
560 562 4.126437 CGCAAGATAGAGACAGAGAGAGA 58.874 47.826 0.00 0.00 43.02 3.10
561 563 4.212004 CGCAAGATAGAGACAGAGAGAGAG 59.788 50.000 0.00 0.00 43.02 3.20
562 564 4.023707 GCAAGATAGAGACAGAGAGAGAGC 60.024 50.000 0.00 0.00 0.00 4.09
563 565 4.357918 AGATAGAGACAGAGAGAGAGCC 57.642 50.000 0.00 0.00 0.00 4.70
564 566 3.716353 AGATAGAGACAGAGAGAGAGCCA 59.284 47.826 0.00 0.00 0.00 4.75
565 567 2.128771 AGAGACAGAGAGAGAGCCAC 57.871 55.000 0.00 0.00 0.00 5.01
566 568 1.354031 AGAGACAGAGAGAGAGCCACA 59.646 52.381 0.00 0.00 0.00 4.17
567 569 2.166829 GAGACAGAGAGAGAGCCACAA 58.833 52.381 0.00 0.00 0.00 3.33
568 570 1.892474 AGACAGAGAGAGAGCCACAAC 59.108 52.381 0.00 0.00 0.00 3.32
569 571 0.600557 ACAGAGAGAGAGCCACAACG 59.399 55.000 0.00 0.00 0.00 4.10
570 572 0.884514 CAGAGAGAGAGCCACAACGA 59.115 55.000 0.00 0.00 0.00 3.85
571 573 1.476085 CAGAGAGAGAGCCACAACGAT 59.524 52.381 0.00 0.00 0.00 3.73
572 574 2.685388 CAGAGAGAGAGCCACAACGATA 59.315 50.000 0.00 0.00 0.00 2.92
573 575 2.948979 AGAGAGAGAGCCACAACGATAG 59.051 50.000 0.00 0.00 46.19 2.08
589 591 7.374228 CACAACGATAGCAATCACAATTATGAC 59.626 37.037 0.00 0.00 42.67 3.06
592 594 6.425114 ACGATAGCAATCACAATTATGACTCC 59.575 38.462 0.00 0.00 42.67 3.85
619 621 0.677731 CCCAATCAGTCATGTGCGGT 60.678 55.000 0.00 0.00 0.00 5.68
620 622 0.448990 CCAATCAGTCATGTGCGGTG 59.551 55.000 0.00 0.00 0.00 4.94
621 623 0.179181 CAATCAGTCATGTGCGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
622 624 1.638388 AATCAGTCATGTGCGGTGCG 61.638 55.000 0.00 0.00 0.00 5.34
623 625 2.505635 ATCAGTCATGTGCGGTGCGA 62.506 55.000 0.00 0.00 0.00 5.10
624 626 2.433145 AGTCATGTGCGGTGCGAG 60.433 61.111 0.00 0.00 0.00 5.03
625 627 4.152625 GTCATGTGCGGTGCGAGC 62.153 66.667 0.00 0.00 0.00 5.03
626 628 4.678499 TCATGTGCGGTGCGAGCA 62.678 61.111 0.00 0.00 42.99 4.26
627 629 3.502455 CATGTGCGGTGCGAGCAT 61.502 61.111 0.00 0.00 46.96 3.79
696 698 1.682344 GGGGCAAAGAATTCCGCCT 60.682 57.895 23.14 0.00 43.81 5.52
697 699 1.667154 GGGGCAAAGAATTCCGCCTC 61.667 60.000 23.14 18.76 43.81 4.70
698 700 1.667154 GGGCAAAGAATTCCGCCTCC 61.667 60.000 23.14 10.55 43.81 4.30
699 701 1.667154 GGCAAAGAATTCCGCCTCCC 61.667 60.000 19.05 3.58 41.79 4.30
700 702 1.993369 GCAAAGAATTCCGCCTCCCG 61.993 60.000 0.65 0.00 0.00 5.14
701 703 0.676782 CAAAGAATTCCGCCTCCCGT 60.677 55.000 0.65 0.00 34.38 5.28
702 704 0.392595 AAAGAATTCCGCCTCCCGTC 60.393 55.000 0.65 0.00 34.38 4.79
703 705 2.203029 GAATTCCGCCTCCCGTCC 60.203 66.667 0.00 0.00 34.38 4.79
704 706 4.157120 AATTCCGCCTCCCGTCCG 62.157 66.667 0.00 0.00 34.38 4.79
1525 1889 2.282110 CAACCATGGGTGACGGCA 60.282 61.111 26.58 0.00 35.34 5.69
1566 1930 2.981909 ACCGAGTCAACGCCGAGA 60.982 61.111 0.00 0.00 0.00 4.04
1639 2003 1.907807 ACGCCCACCAAGGTACGTA 60.908 57.895 11.02 0.00 43.81 3.57
1640 2004 1.446618 CGCCCACCAAGGTACGTAC 60.447 63.158 17.56 17.56 34.66 3.67
1641 2005 1.446618 GCCCACCAAGGTACGTACG 60.447 63.158 18.98 15.01 34.66 3.67
1642 2006 1.876497 GCCCACCAAGGTACGTACGA 61.876 60.000 24.41 2.43 34.66 3.43
1646 2010 5.618598 CCCACCAAGGTACGTACGATACG 62.619 56.522 24.41 13.51 46.68 3.06
1658 2022 1.935933 ACGATACGAACTCCAATGCC 58.064 50.000 0.00 0.00 0.00 4.40
1703 2069 1.078759 CAGCAACCGATCGTGGACTC 61.079 60.000 15.09 0.00 0.00 3.36
1744 2116 3.488048 GCTATGGAGCTCAGCTACG 57.512 57.895 17.19 0.00 43.58 3.51
1752 2124 0.956410 AGCTCAGCTACGACGTGTCT 60.956 55.000 11.56 4.34 36.99 3.41
1780 2152 3.181510 ACTGACGTGCTGTTTTCTTTCAC 60.182 43.478 0.00 0.00 0.00 3.18
1868 2240 2.267681 GACCTCCGATCGTTCAGCGT 62.268 60.000 15.09 7.00 42.13 5.07
2047 2419 4.415332 GCCTCCGCGACGACAAGA 62.415 66.667 8.23 0.00 0.00 3.02
2154 2529 2.108514 CGTCATCGGCACCAGCAAT 61.109 57.895 0.00 0.00 44.61 3.56
2455 2846 9.723447 CAGAGATGATGATCAAGATTTGAAAAG 57.277 33.333 0.00 0.00 43.95 2.27
2510 2905 5.374071 ACACTCCGATTTTTGTTACTTCCT 58.626 37.500 0.00 0.00 0.00 3.36
2548 2943 6.697395 TCCGACATGGATAAACATACATAGG 58.303 40.000 0.00 0.00 43.74 2.57
2549 2944 6.269077 TCCGACATGGATAAACATACATAGGT 59.731 38.462 0.00 0.00 43.74 3.08
2550 2945 7.452189 TCCGACATGGATAAACATACATAGGTA 59.548 37.037 0.00 0.00 43.74 3.08
2551 2946 7.759886 CCGACATGGATAAACATACATAGGTAG 59.240 40.741 0.00 0.00 42.00 3.18
2552 2947 7.275779 CGACATGGATAAACATACATAGGTAGC 59.724 40.741 0.00 0.00 31.88 3.58
2553 2948 8.207350 ACATGGATAAACATACATAGGTAGCT 57.793 34.615 0.00 0.00 31.88 3.32
2554 2949 8.097038 ACATGGATAAACATACATAGGTAGCTG 58.903 37.037 4.27 0.00 31.88 4.24
2556 2951 8.029782 TGGATAAACATACATAGGTAGCTGTT 57.970 34.615 4.27 1.66 35.34 3.16
2557 2952 8.148351 TGGATAAACATACATAGGTAGCTGTTC 58.852 37.037 4.27 0.00 33.66 3.18
2558 2953 8.148351 GGATAAACATACATAGGTAGCTGTTCA 58.852 37.037 4.27 0.00 33.66 3.18
2596 2993 7.457535 TCCCCTGGTTGATTTCTGAAATAAAAT 59.542 33.333 15.14 0.00 0.00 1.82
2753 3363 2.223923 CCAGATGAGAGAATGGACGGTC 60.224 54.545 0.00 0.00 34.60 4.79
2757 3367 2.927028 TGAGAGAATGGACGGTCGATA 58.073 47.619 6.06 0.00 0.00 2.92
2776 3394 7.974501 GGTCGATAAAATTTCTAGTCACTCTCA 59.025 37.037 0.00 0.00 0.00 3.27
2838 3457 0.885196 GCTGGGGTTATTTTGTCGCA 59.115 50.000 0.00 0.00 0.00 5.10
2864 3483 3.610911 ACCGAAATGGAGTCCAAATCTC 58.389 45.455 17.71 9.25 42.00 2.75
2913 3542 2.496817 GCTCCTGGCACGTAGAGG 59.503 66.667 0.00 0.00 41.35 3.69
2914 3543 2.352032 GCTCCTGGCACGTAGAGGT 61.352 63.158 6.58 0.00 41.35 3.85
2915 3544 1.035932 GCTCCTGGCACGTAGAGGTA 61.036 60.000 6.58 0.00 41.35 3.08
2935 3564 4.095036 GGTAGTAGCAGACAATTTGGAAGC 59.905 45.833 0.78 1.66 0.00 3.86
2962 3594 0.036164 ATGCCGCTGGTACAAACTGA 59.964 50.000 0.00 0.00 38.70 3.41
2991 3623 2.200373 ACGCAGGATAAGTTTTGGCT 57.800 45.000 0.00 0.00 0.00 4.75
2999 3631 5.006746 CAGGATAAGTTTTGGCTGATACGTC 59.993 44.000 0.00 0.00 0.00 4.34
3039 3671 2.903357 CTAGTGGGCATGGCGAGT 59.097 61.111 15.75 15.75 0.00 4.18
3163 3798 4.385748 GCCAAAAACAATGTTCGGAATCTC 59.614 41.667 11.77 0.00 0.00 2.75
3165 3800 5.212194 CAAAAACAATGTTCGGAATCTCGT 58.788 37.500 0.00 0.00 0.00 4.18
3213 3848 1.096967 CAACCGGCATATGCAGCTGA 61.097 55.000 28.07 2.70 44.36 4.26
3231 3866 1.973515 TGAGTTCATCAGGTGTCAGCT 59.026 47.619 0.00 0.00 32.77 4.24
3237 3872 3.388497 TCAGGTGTCAGCTGATCCT 57.612 52.632 26.87 27.01 46.53 3.24
3238 3873 0.900421 TCAGGTGTCAGCTGATCCTG 59.100 55.000 37.65 37.65 46.53 3.86
3306 3942 3.862264 GCCTTCATTTTTCTTCTGCCACC 60.862 47.826 0.00 0.00 0.00 4.61
3308 3944 2.582052 TCATTTTTCTTCTGCCACCGT 58.418 42.857 0.00 0.00 0.00 4.83
3322 3958 2.819595 CCGTTGTGCCCGATGAGG 60.820 66.667 0.00 0.00 40.63 3.86
3329 3965 2.356793 GCCCGATGAGGCGATGAG 60.357 66.667 0.00 0.00 44.57 2.90
3342 3978 2.827800 CGATGAGCATCCATGGTAGT 57.172 50.000 12.58 0.00 38.85 2.73
3343 3979 3.942130 CGATGAGCATCCATGGTAGTA 57.058 47.619 12.58 0.00 38.85 1.82
3344 3980 3.842820 CGATGAGCATCCATGGTAGTAG 58.157 50.000 12.58 0.00 38.85 2.57
3345 3981 3.256879 CGATGAGCATCCATGGTAGTAGT 59.743 47.826 12.58 0.00 38.85 2.73
3346 3982 4.459337 CGATGAGCATCCATGGTAGTAGTA 59.541 45.833 12.58 0.00 38.85 1.82
3347 3983 5.392487 CGATGAGCATCCATGGTAGTAGTAG 60.392 48.000 12.58 0.00 38.85 2.57
3348 3984 5.061721 TGAGCATCCATGGTAGTAGTAGA 57.938 43.478 12.58 0.00 38.85 2.59
3349 3985 5.454966 TGAGCATCCATGGTAGTAGTAGAA 58.545 41.667 12.58 0.00 38.85 2.10
3350 3986 6.077993 TGAGCATCCATGGTAGTAGTAGAAT 58.922 40.000 12.58 0.00 38.85 2.40
3351 3987 7.238710 TGAGCATCCATGGTAGTAGTAGAATA 58.761 38.462 12.58 0.00 38.85 1.75
3352 3988 7.394641 TGAGCATCCATGGTAGTAGTAGAATAG 59.605 40.741 12.58 0.00 38.85 1.73
3353 3989 7.471041 AGCATCCATGGTAGTAGTAGAATAGA 58.529 38.462 12.58 0.00 36.64 1.98
3354 3990 7.950684 AGCATCCATGGTAGTAGTAGAATAGAA 59.049 37.037 12.58 0.00 36.64 2.10
3355 3991 8.754080 GCATCCATGGTAGTAGTAGAATAGAAT 58.246 37.037 12.58 0.00 0.00 2.40
3357 3993 8.123639 TCCATGGTAGTAGTAGAATAGAATGC 57.876 38.462 12.58 0.00 0.00 3.56
3358 3994 7.728532 TCCATGGTAGTAGTAGAATAGAATGCA 59.271 37.037 12.58 0.00 0.00 3.96
3359 3995 7.815068 CCATGGTAGTAGTAGAATAGAATGCAC 59.185 40.741 2.57 0.00 0.00 4.57
3360 3996 6.967135 TGGTAGTAGTAGAATAGAATGCACG 58.033 40.000 0.00 0.00 0.00 5.34
3361 3997 6.016527 TGGTAGTAGTAGAATAGAATGCACGG 60.017 42.308 0.00 0.00 0.00 4.94
3362 3998 5.455056 AGTAGTAGAATAGAATGCACGGG 57.545 43.478 0.00 0.00 0.00 5.28
3363 3999 3.753294 AGTAGAATAGAATGCACGGGG 57.247 47.619 0.00 0.00 0.00 5.73
3364 4000 2.368875 AGTAGAATAGAATGCACGGGGG 59.631 50.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.250116 ACTGCTCCTCGTTGATGATATC 57.750 45.455 0.00 0.00 0.00 1.63
1 2 4.343526 AGAACTGCTCCTCGTTGATGATAT 59.656 41.667 0.00 0.00 0.00 1.63
2 3 3.701542 AGAACTGCTCCTCGTTGATGATA 59.298 43.478 0.00 0.00 0.00 2.15
3 4 2.499289 AGAACTGCTCCTCGTTGATGAT 59.501 45.455 0.00 0.00 0.00 2.45
4 5 1.895798 AGAACTGCTCCTCGTTGATGA 59.104 47.619 0.00 0.00 0.00 2.92
5 6 2.376808 AGAACTGCTCCTCGTTGATG 57.623 50.000 0.00 0.00 0.00 3.07
6 7 2.672478 CGAAGAACTGCTCCTCGTTGAT 60.672 50.000 0.00 0.00 33.98 2.57
7 8 1.335964 CGAAGAACTGCTCCTCGTTGA 60.336 52.381 0.00 0.00 33.98 3.18
8 9 1.063806 CGAAGAACTGCTCCTCGTTG 58.936 55.000 0.00 0.00 33.98 4.10
9 10 0.667792 GCGAAGAACTGCTCCTCGTT 60.668 55.000 1.62 0.00 39.71 3.85
10 11 1.080434 GCGAAGAACTGCTCCTCGT 60.080 57.895 1.62 0.00 39.71 4.18
11 12 1.807573 GGCGAAGAACTGCTCCTCG 60.808 63.158 0.00 0.00 40.38 4.63
12 13 1.807573 CGGCGAAGAACTGCTCCTC 60.808 63.158 0.00 0.00 0.00 3.71
13 14 2.219325 CTCGGCGAAGAACTGCTCCT 62.219 60.000 12.13 0.00 0.00 3.69
14 15 1.807573 CTCGGCGAAGAACTGCTCC 60.808 63.158 12.13 0.00 0.00 4.70
15 16 0.800300 CTCTCGGCGAAGAACTGCTC 60.800 60.000 12.13 0.00 0.00 4.26
16 17 1.214062 CTCTCGGCGAAGAACTGCT 59.786 57.895 12.13 0.00 0.00 4.24
17 18 1.807573 CCTCTCGGCGAAGAACTGC 60.808 63.158 12.13 0.00 0.00 4.40
18 19 0.179150 CTCCTCTCGGCGAAGAACTG 60.179 60.000 12.13 0.00 0.00 3.16
19 20 1.316706 CCTCCTCTCGGCGAAGAACT 61.317 60.000 12.13 0.00 0.00 3.01
20 21 1.139947 CCTCCTCTCGGCGAAGAAC 59.860 63.158 12.13 0.00 0.00 3.01
21 22 2.052690 CCCTCCTCTCGGCGAAGAA 61.053 63.158 12.13 0.00 0.00 2.52
22 23 2.440430 CCCTCCTCTCGGCGAAGA 60.440 66.667 12.13 9.82 0.00 2.87
23 24 4.214327 GCCCTCCTCTCGGCGAAG 62.214 72.222 12.13 11.25 34.94 3.79
28 29 4.507916 TCTCCGCCCTCCTCTCGG 62.508 72.222 0.00 0.00 44.16 4.63
29 30 2.904866 CTCTCCGCCCTCCTCTCG 60.905 72.222 0.00 0.00 0.00 4.04
30 31 2.520741 CCTCTCCGCCCTCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
31 32 2.581726 CTTCCTCTCCGCCCTCCTCT 62.582 65.000 0.00 0.00 0.00 3.69
32 33 2.042843 TTCCTCTCCGCCCTCCTC 60.043 66.667 0.00 0.00 0.00 3.71
33 34 2.042435 CTTCCTCTCCGCCCTCCT 60.042 66.667 0.00 0.00 0.00 3.69
34 35 3.157949 CCTTCCTCTCCGCCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
35 36 2.042843 TCCTTCCTCTCCGCCCTC 60.043 66.667 0.00 0.00 0.00 4.30
36 37 2.042435 CTCCTTCCTCTCCGCCCT 60.042 66.667 0.00 0.00 0.00 5.19
37 38 1.681486 CTTCTCCTTCCTCTCCGCCC 61.681 65.000 0.00 0.00 0.00 6.13
38 39 0.684805 TCTTCTCCTTCCTCTCCGCC 60.685 60.000 0.00 0.00 0.00 6.13
39 40 0.744281 CTCTTCTCCTTCCTCTCCGC 59.256 60.000 0.00 0.00 0.00 5.54
40 41 1.064314 TCCTCTTCTCCTTCCTCTCCG 60.064 57.143 0.00 0.00 0.00 4.63
41 42 2.838637 TCCTCTTCTCCTTCCTCTCC 57.161 55.000 0.00 0.00 0.00 3.71
42 43 3.031013 CCTTCCTCTTCTCCTTCCTCTC 58.969 54.545 0.00 0.00 0.00 3.20
43 44 2.657459 TCCTTCCTCTTCTCCTTCCTCT 59.343 50.000 0.00 0.00 0.00 3.69
44 45 3.031013 CTCCTTCCTCTTCTCCTTCCTC 58.969 54.545 0.00 0.00 0.00 3.71
45 46 2.892301 GCTCCTTCCTCTTCTCCTTCCT 60.892 54.545 0.00 0.00 0.00 3.36
46 47 1.484653 GCTCCTTCCTCTTCTCCTTCC 59.515 57.143 0.00 0.00 0.00 3.46
47 48 1.136110 CGCTCCTTCCTCTTCTCCTTC 59.864 57.143 0.00 0.00 0.00 3.46
48 49 1.190643 CGCTCCTTCCTCTTCTCCTT 58.809 55.000 0.00 0.00 0.00 3.36
49 50 0.333312 TCGCTCCTTCCTCTTCTCCT 59.667 55.000 0.00 0.00 0.00 3.69
50 51 0.744281 CTCGCTCCTTCCTCTTCTCC 59.256 60.000 0.00 0.00 0.00 3.71
51 52 0.102300 GCTCGCTCCTTCCTCTTCTC 59.898 60.000 0.00 0.00 0.00 2.87
52 53 1.326951 GGCTCGCTCCTTCCTCTTCT 61.327 60.000 0.00 0.00 0.00 2.85
53 54 1.142965 GGCTCGCTCCTTCCTCTTC 59.857 63.158 0.00 0.00 0.00 2.87
54 55 2.716017 CGGCTCGCTCCTTCCTCTT 61.716 63.158 0.00 0.00 0.00 2.85
55 56 3.144193 CGGCTCGCTCCTTCCTCT 61.144 66.667 0.00 0.00 0.00 3.69
72 73 1.951631 GCTTGTCCTCGCGATAGGC 60.952 63.158 10.36 6.60 36.51 3.93
73 74 4.327885 GCTTGTCCTCGCGATAGG 57.672 61.111 10.36 9.00 38.06 2.57
79 80 2.733593 ACGTTCGCTTGTCCTCGC 60.734 61.111 0.00 0.00 0.00 5.03
80 81 2.372690 CCACGTTCGCTTGTCCTCG 61.373 63.158 0.00 0.00 0.00 4.63
81 82 0.599204 TTCCACGTTCGCTTGTCCTC 60.599 55.000 0.00 0.00 0.00 3.71
82 83 0.600255 CTTCCACGTTCGCTTGTCCT 60.600 55.000 0.00 0.00 0.00 3.85
83 84 1.566018 CCTTCCACGTTCGCTTGTCC 61.566 60.000 0.00 0.00 0.00 4.02
84 85 1.860078 CCTTCCACGTTCGCTTGTC 59.140 57.895 0.00 0.00 0.00 3.18
85 86 2.251642 GCCTTCCACGTTCGCTTGT 61.252 57.895 0.00 0.00 0.00 3.16
86 87 2.556287 GCCTTCCACGTTCGCTTG 59.444 61.111 0.00 0.00 0.00 4.01
87 88 3.041940 CGCCTTCCACGTTCGCTT 61.042 61.111 0.00 0.00 0.00 4.68
90 91 3.110178 GACCGCCTTCCACGTTCG 61.110 66.667 0.00 0.00 0.00 3.95
91 92 3.110178 CGACCGCCTTCCACGTTC 61.110 66.667 0.00 0.00 0.00 3.95
94 95 3.636313 TTAGCGACCGCCTTCCACG 62.636 63.158 11.03 0.00 43.17 4.94
95 96 0.743345 ATTTAGCGACCGCCTTCCAC 60.743 55.000 11.03 0.00 43.17 4.02
96 97 0.825410 TATTTAGCGACCGCCTTCCA 59.175 50.000 11.03 0.00 43.17 3.53
97 98 1.215244 GTATTTAGCGACCGCCTTCC 58.785 55.000 11.03 0.00 43.17 3.46
98 99 1.930567 TGTATTTAGCGACCGCCTTC 58.069 50.000 11.03 0.00 43.17 3.46
99 100 2.004733 GTTGTATTTAGCGACCGCCTT 58.995 47.619 11.03 0.00 43.17 4.35
100 101 1.066716 TGTTGTATTTAGCGACCGCCT 60.067 47.619 11.03 1.54 43.17 5.52
101 102 1.361793 TGTTGTATTTAGCGACCGCC 58.638 50.000 11.03 0.00 43.17 6.13
102 103 2.286184 CCATGTTGTATTTAGCGACCGC 60.286 50.000 6.25 6.25 42.33 5.68
103 104 2.286184 GCCATGTTGTATTTAGCGACCG 60.286 50.000 0.00 0.00 0.00 4.79
104 105 2.286184 CGCCATGTTGTATTTAGCGACC 60.286 50.000 0.00 0.00 44.51 4.79
105 106 2.849502 GCGCCATGTTGTATTTAGCGAC 60.850 50.000 10.65 0.31 44.51 5.19
106 107 1.329292 GCGCCATGTTGTATTTAGCGA 59.671 47.619 10.65 0.00 44.51 4.93
107 108 1.330521 AGCGCCATGTTGTATTTAGCG 59.669 47.619 2.29 0.00 44.54 4.26
108 109 3.058914 CCTAGCGCCATGTTGTATTTAGC 60.059 47.826 2.29 0.00 0.00 3.09
109 110 4.377021 TCCTAGCGCCATGTTGTATTTAG 58.623 43.478 2.29 0.00 0.00 1.85
110 111 4.100344 TCTCCTAGCGCCATGTTGTATTTA 59.900 41.667 2.29 0.00 0.00 1.40
111 112 3.118408 TCTCCTAGCGCCATGTTGTATTT 60.118 43.478 2.29 0.00 0.00 1.40
112 113 2.434336 TCTCCTAGCGCCATGTTGTATT 59.566 45.455 2.29 0.00 0.00 1.89
113 114 2.039418 TCTCCTAGCGCCATGTTGTAT 58.961 47.619 2.29 0.00 0.00 2.29
114 115 1.480789 TCTCCTAGCGCCATGTTGTA 58.519 50.000 2.29 0.00 0.00 2.41
115 116 0.833287 ATCTCCTAGCGCCATGTTGT 59.167 50.000 2.29 0.00 0.00 3.32
116 117 1.224075 CATCTCCTAGCGCCATGTTG 58.776 55.000 2.29 0.00 0.00 3.33
117 118 0.833287 ACATCTCCTAGCGCCATGTT 59.167 50.000 2.29 0.00 0.00 2.71
118 119 0.105593 CACATCTCCTAGCGCCATGT 59.894 55.000 2.29 0.04 0.00 3.21
119 120 0.105593 ACACATCTCCTAGCGCCATG 59.894 55.000 2.29 0.00 0.00 3.66
120 121 0.390860 GACACATCTCCTAGCGCCAT 59.609 55.000 2.29 0.00 0.00 4.40
121 122 1.816537 GACACATCTCCTAGCGCCA 59.183 57.895 2.29 0.00 0.00 5.69
122 123 1.299468 CGACACATCTCCTAGCGCC 60.299 63.158 2.29 0.00 0.00 6.53
123 124 0.592754 GACGACACATCTCCTAGCGC 60.593 60.000 0.00 0.00 0.00 5.92
124 125 0.029567 GGACGACACATCTCCTAGCG 59.970 60.000 0.00 0.00 0.00 4.26
125 126 1.066303 CAGGACGACACATCTCCTAGC 59.934 57.143 0.00 0.00 33.32 3.42
126 127 1.678627 CCAGGACGACACATCTCCTAG 59.321 57.143 0.00 0.00 33.32 3.02
127 128 1.685180 CCCAGGACGACACATCTCCTA 60.685 57.143 0.00 0.00 33.32 2.94
128 129 0.972983 CCCAGGACGACACATCTCCT 60.973 60.000 0.00 0.00 34.58 3.69
129 130 0.970937 TCCCAGGACGACACATCTCC 60.971 60.000 0.00 0.00 0.00 3.71
130 131 0.173708 GTCCCAGGACGACACATCTC 59.826 60.000 0.05 0.00 35.30 2.75
131 132 2.277858 GTCCCAGGACGACACATCT 58.722 57.895 0.05 0.00 35.30 2.90
132 133 4.913126 GTCCCAGGACGACACATC 57.087 61.111 0.05 0.00 35.30 3.06
137 138 3.450115 CGGGAGTCCCAGGACGAC 61.450 72.222 28.08 9.34 45.83 4.34
145 146 4.267503 GATCGTCGCGGGAGTCCC 62.268 72.222 19.37 19.37 41.09 4.46
146 147 4.609247 CGATCGTCGCGGGAGTCC 62.609 72.222 6.13 0.00 31.14 3.85
147 148 4.609247 CCGATCGTCGCGGGAGTC 62.609 72.222 15.09 0.87 44.87 3.36
153 154 2.202570 AAGGAACCGATCGTCGCG 60.203 61.111 15.09 0.00 38.82 5.87
154 155 1.153901 TCAAGGAACCGATCGTCGC 60.154 57.895 15.09 2.05 38.82 5.19
155 156 1.132199 CGTCAAGGAACCGATCGTCG 61.132 60.000 15.09 1.70 40.07 5.12
156 157 1.411493 GCGTCAAGGAACCGATCGTC 61.411 60.000 15.09 5.74 0.00 4.20
157 158 1.445582 GCGTCAAGGAACCGATCGT 60.446 57.895 15.09 0.00 0.00 3.73
158 159 2.165301 GGCGTCAAGGAACCGATCG 61.165 63.158 8.51 8.51 0.00 3.69
159 160 0.458669 TAGGCGTCAAGGAACCGATC 59.541 55.000 0.00 0.00 0.00 3.69
160 161 1.120530 ATAGGCGTCAAGGAACCGAT 58.879 50.000 0.00 0.00 0.00 4.18
161 162 0.174845 CATAGGCGTCAAGGAACCGA 59.825 55.000 0.00 0.00 0.00 4.69
162 163 1.429148 GCATAGGCGTCAAGGAACCG 61.429 60.000 0.00 0.00 0.00 4.44
163 164 2.394604 GCATAGGCGTCAAGGAACC 58.605 57.895 0.00 0.00 0.00 3.62
174 175 1.929836 CTCAGACGTTTGAGCATAGGC 59.070 52.381 21.52 0.00 38.28 3.93
175 176 2.166459 TCCTCAGACGTTTGAGCATAGG 59.834 50.000 26.31 15.74 42.58 2.57
176 177 3.443037 CTCCTCAGACGTTTGAGCATAG 58.557 50.000 26.31 18.98 42.58 2.23
177 178 2.166459 CCTCCTCAGACGTTTGAGCATA 59.834 50.000 26.31 14.64 42.58 3.14
178 179 1.066573 CCTCCTCAGACGTTTGAGCAT 60.067 52.381 26.31 0.00 42.58 3.79
179 180 0.318441 CCTCCTCAGACGTTTGAGCA 59.682 55.000 26.31 14.41 42.58 4.26
180 181 0.603569 TCCTCCTCAGACGTTTGAGC 59.396 55.000 26.31 0.00 42.58 4.26
181 182 1.613925 TGTCCTCCTCAGACGTTTGAG 59.386 52.381 25.12 25.12 43.35 3.02
182 183 1.699730 TGTCCTCCTCAGACGTTTGA 58.300 50.000 8.66 8.66 37.04 2.69
183 184 2.029020 TGATGTCCTCCTCAGACGTTTG 60.029 50.000 0.00 0.00 37.04 2.93
184 185 2.248248 TGATGTCCTCCTCAGACGTTT 58.752 47.619 0.00 0.00 37.04 3.60
185 186 1.924731 TGATGTCCTCCTCAGACGTT 58.075 50.000 0.00 0.00 37.04 3.99
186 187 2.028130 GATGATGTCCTCCTCAGACGT 58.972 52.381 0.00 0.00 37.04 4.34
187 188 1.001924 CGATGATGTCCTCCTCAGACG 60.002 57.143 0.00 0.00 37.04 4.18
188 189 2.293122 CTCGATGATGTCCTCCTCAGAC 59.707 54.545 0.00 0.00 34.72 3.51
189 190 2.173569 TCTCGATGATGTCCTCCTCAGA 59.826 50.000 0.00 0.00 0.00 3.27
190 191 2.293122 GTCTCGATGATGTCCTCCTCAG 59.707 54.545 0.00 0.00 0.00 3.35
191 192 2.302260 GTCTCGATGATGTCCTCCTCA 58.698 52.381 0.00 0.00 0.00 3.86
192 193 2.293122 CTGTCTCGATGATGTCCTCCTC 59.707 54.545 0.00 0.00 0.00 3.71
193 194 2.092158 TCTGTCTCGATGATGTCCTCCT 60.092 50.000 0.00 0.00 0.00 3.69
194 195 2.293122 CTCTGTCTCGATGATGTCCTCC 59.707 54.545 0.00 0.00 0.00 4.30
195 196 2.948979 ACTCTGTCTCGATGATGTCCTC 59.051 50.000 0.00 0.00 0.00 3.71
196 197 2.948979 GACTCTGTCTCGATGATGTCCT 59.051 50.000 0.00 0.00 0.00 3.85
197 198 2.034053 GGACTCTGTCTCGATGATGTCC 59.966 54.545 0.00 0.00 36.42 4.02
198 199 2.286713 CGGACTCTGTCTCGATGATGTC 60.287 54.545 0.00 0.00 31.51 3.06
199 200 1.673400 CGGACTCTGTCTCGATGATGT 59.327 52.381 0.00 0.00 31.51 3.06
200 201 1.943340 TCGGACTCTGTCTCGATGATG 59.057 52.381 0.00 0.00 33.17 3.07
201 202 2.217750 CTCGGACTCTGTCTCGATGAT 58.782 52.381 10.08 0.00 35.80 2.45
202 203 1.066071 ACTCGGACTCTGTCTCGATGA 60.066 52.381 10.08 0.00 35.80 2.92
203 204 1.329292 GACTCGGACTCTGTCTCGATG 59.671 57.143 10.08 8.08 35.80 3.84
204 205 1.066071 TGACTCGGACTCTGTCTCGAT 60.066 52.381 10.08 4.04 35.80 3.59
205 206 0.320697 TGACTCGGACTCTGTCTCGA 59.679 55.000 9.54 9.54 35.36 4.04
206 207 0.724549 CTGACTCGGACTCTGTCTCG 59.275 60.000 0.00 0.00 32.47 4.04
207 208 2.006888 CTCTGACTCGGACTCTGTCTC 58.993 57.143 0.00 0.00 32.47 3.36
208 209 1.626321 TCTCTGACTCGGACTCTGTCT 59.374 52.381 0.00 0.00 32.47 3.41
209 210 2.102070 TCTCTGACTCGGACTCTGTC 57.898 55.000 0.00 0.00 0.00 3.51
210 211 2.570415 TTCTCTGACTCGGACTCTGT 57.430 50.000 0.00 0.00 0.00 3.41
211 212 3.013219 TCATTCTCTGACTCGGACTCTG 58.987 50.000 0.00 0.00 0.00 3.35
212 213 3.358111 TCATTCTCTGACTCGGACTCT 57.642 47.619 0.00 0.00 0.00 3.24
222 223 6.408035 AGAACTACTACTCGTCATTCTCTGA 58.592 40.000 0.00 0.00 28.81 3.27
223 224 6.671614 AGAACTACTACTCGTCATTCTCTG 57.328 41.667 0.00 0.00 28.81 3.35
224 225 7.988599 ACATAGAACTACTACTCGTCATTCTCT 59.011 37.037 0.00 0.00 33.98 3.10
225 226 8.065407 CACATAGAACTACTACTCGTCATTCTC 58.935 40.741 0.00 0.00 33.98 2.87
226 227 7.769507 TCACATAGAACTACTACTCGTCATTCT 59.230 37.037 0.00 0.00 35.38 2.40
227 228 7.917597 TCACATAGAACTACTACTCGTCATTC 58.082 38.462 0.00 0.00 33.62 2.67
228 229 7.769507 TCTCACATAGAACTACTACTCGTCATT 59.230 37.037 0.00 0.00 33.62 2.57
229 230 7.273712 TCTCACATAGAACTACTACTCGTCAT 58.726 38.462 0.00 0.00 33.62 3.06
230 231 6.637657 TCTCACATAGAACTACTACTCGTCA 58.362 40.000 0.00 0.00 33.62 4.35
231 232 6.757947 ACTCTCACATAGAACTACTACTCGTC 59.242 42.308 0.00 0.00 32.46 4.20
232 233 6.642430 ACTCTCACATAGAACTACTACTCGT 58.358 40.000 0.00 0.00 32.46 4.18
233 234 8.705134 CATACTCTCACATAGAACTACTACTCG 58.295 40.741 0.00 0.00 32.46 4.18
234 235 9.550406 ACATACTCTCACATAGAACTACTACTC 57.450 37.037 0.00 0.00 32.46 2.59
242 243 9.900710 CCTACAATACATACTCTCACATAGAAC 57.099 37.037 0.00 0.00 32.46 3.01
243 244 9.862149 TCCTACAATACATACTCTCACATAGAA 57.138 33.333 0.00 0.00 32.46 2.10
244 245 9.508642 CTCCTACAATACATACTCTCACATAGA 57.491 37.037 0.00 0.00 0.00 1.98
245 246 9.508642 TCTCCTACAATACATACTCTCACATAG 57.491 37.037 0.00 0.00 0.00 2.23
246 247 9.862149 TTCTCCTACAATACATACTCTCACATA 57.138 33.333 0.00 0.00 0.00 2.29
247 248 8.768501 TTCTCCTACAATACATACTCTCACAT 57.231 34.615 0.00 0.00 0.00 3.21
248 249 8.053355 TCTTCTCCTACAATACATACTCTCACA 58.947 37.037 0.00 0.00 0.00 3.58
249 250 8.347035 GTCTTCTCCTACAATACATACTCTCAC 58.653 40.741 0.00 0.00 0.00 3.51
250 251 8.275758 AGTCTTCTCCTACAATACATACTCTCA 58.724 37.037 0.00 0.00 0.00 3.27
251 252 8.685838 AGTCTTCTCCTACAATACATACTCTC 57.314 38.462 0.00 0.00 0.00 3.20
252 253 9.787435 CTAGTCTTCTCCTACAATACATACTCT 57.213 37.037 0.00 0.00 0.00 3.24
253 254 9.781633 TCTAGTCTTCTCCTACAATACATACTC 57.218 37.037 0.00 0.00 0.00 2.59
265 266 9.926158 CGTACATATAGTTCTAGTCTTCTCCTA 57.074 37.037 0.00 0.00 0.00 2.94
266 267 7.388500 GCGTACATATAGTTCTAGTCTTCTCCT 59.612 40.741 0.00 0.00 0.00 3.69
267 268 7.520686 GCGTACATATAGTTCTAGTCTTCTCC 58.479 42.308 0.00 0.00 0.00 3.71
268 269 7.228840 CGCGTACATATAGTTCTAGTCTTCTC 58.771 42.308 0.00 0.00 0.00 2.87
269 270 6.147492 CCGCGTACATATAGTTCTAGTCTTCT 59.853 42.308 4.92 0.00 0.00 2.85
270 271 6.073331 ACCGCGTACATATAGTTCTAGTCTTC 60.073 42.308 4.92 0.00 0.00 2.87
271 272 5.762218 ACCGCGTACATATAGTTCTAGTCTT 59.238 40.000 4.92 0.00 0.00 3.01
272 273 5.303971 ACCGCGTACATATAGTTCTAGTCT 58.696 41.667 4.92 0.00 0.00 3.24
273 274 5.604010 ACCGCGTACATATAGTTCTAGTC 57.396 43.478 4.92 0.00 0.00 2.59
274 275 5.762218 AGAACCGCGTACATATAGTTCTAGT 59.238 40.000 17.55 0.00 41.46 2.57
275 276 6.238610 AGAACCGCGTACATATAGTTCTAG 57.761 41.667 17.55 0.00 41.46 2.43
276 277 7.201470 CGATAGAACCGCGTACATATAGTTCTA 60.201 40.741 23.08 23.08 45.61 2.10
277 278 6.401903 CGATAGAACCGCGTACATATAGTTCT 60.402 42.308 21.02 21.02 44.41 3.01
278 279 5.731723 CGATAGAACCGCGTACATATAGTTC 59.268 44.000 4.92 8.89 39.76 3.01
279 280 5.180117 ACGATAGAACCGCGTACATATAGTT 59.820 40.000 4.92 0.00 36.37 2.24
280 281 4.692625 ACGATAGAACCGCGTACATATAGT 59.307 41.667 4.92 2.24 36.37 2.12
281 282 5.213913 ACGATAGAACCGCGTACATATAG 57.786 43.478 4.92 1.61 36.37 1.31
282 283 6.099341 TCTACGATAGAACCGCGTACATATA 58.901 40.000 4.92 0.00 39.24 0.86
283 284 4.931601 TCTACGATAGAACCGCGTACATAT 59.068 41.667 4.92 0.00 39.24 1.78
284 285 4.306600 TCTACGATAGAACCGCGTACATA 58.693 43.478 4.92 0.00 39.24 2.29
285 286 3.133691 TCTACGATAGAACCGCGTACAT 58.866 45.455 4.92 0.00 39.24 2.29
286 287 2.549926 TCTACGATAGAACCGCGTACA 58.450 47.619 4.92 0.00 39.24 2.90
287 288 3.592381 TTCTACGATAGAACCGCGTAC 57.408 47.619 4.92 0.00 39.73 3.67
317 318 9.073475 GTCTTCTCCTACAATACATAGTCTCAT 57.927 37.037 0.00 0.00 0.00 2.90
318 319 8.275758 AGTCTTCTCCTACAATACATAGTCTCA 58.724 37.037 0.00 0.00 0.00 3.27
319 320 8.685838 AGTCTTCTCCTACAATACATAGTCTC 57.314 38.462 0.00 0.00 0.00 3.36
320 321 8.908903 CAAGTCTTCTCCTACAATACATAGTCT 58.091 37.037 0.00 0.00 0.00 3.24
321 322 8.904834 TCAAGTCTTCTCCTACAATACATAGTC 58.095 37.037 0.00 0.00 0.00 2.59
322 323 8.824756 TCAAGTCTTCTCCTACAATACATAGT 57.175 34.615 0.00 0.00 0.00 2.12
323 324 9.522804 GTTCAAGTCTTCTCCTACAATACATAG 57.477 37.037 0.00 0.00 0.00 2.23
324 325 9.256228 AGTTCAAGTCTTCTCCTACAATACATA 57.744 33.333 0.00 0.00 0.00 2.29
325 326 8.140112 AGTTCAAGTCTTCTCCTACAATACAT 57.860 34.615 0.00 0.00 0.00 2.29
326 327 7.540474 AGTTCAAGTCTTCTCCTACAATACA 57.460 36.000 0.00 0.00 0.00 2.29
327 328 9.522804 CATAGTTCAAGTCTTCTCCTACAATAC 57.477 37.037 0.00 0.00 0.00 1.89
328 329 9.256228 ACATAGTTCAAGTCTTCTCCTACAATA 57.744 33.333 0.00 0.00 0.00 1.90
329 330 8.140112 ACATAGTTCAAGTCTTCTCCTACAAT 57.860 34.615 0.00 0.00 0.00 2.71
330 331 7.540474 ACATAGTTCAAGTCTTCTCCTACAA 57.460 36.000 0.00 0.00 0.00 2.41
331 332 7.668469 TGTACATAGTTCAAGTCTTCTCCTACA 59.332 37.037 0.00 0.00 0.00 2.74
332 333 8.053026 TGTACATAGTTCAAGTCTTCTCCTAC 57.947 38.462 0.00 0.00 0.00 3.18
333 334 8.645814 TTGTACATAGTTCAAGTCTTCTCCTA 57.354 34.615 0.00 0.00 0.00 2.94
334 335 7.540474 TTGTACATAGTTCAAGTCTTCTCCT 57.460 36.000 0.00 0.00 0.00 3.69
335 336 8.603242 TTTTGTACATAGTTCAAGTCTTCTCC 57.397 34.615 0.00 0.00 0.00 3.71
343 344 9.507280 CCAGCAATATTTTGTACATAGTTCAAG 57.493 33.333 0.00 0.00 35.17 3.02
344 345 9.237187 TCCAGCAATATTTTGTACATAGTTCAA 57.763 29.630 0.00 0.00 35.17 2.69
345 346 8.800370 TCCAGCAATATTTTGTACATAGTTCA 57.200 30.769 0.00 0.00 35.17 3.18
346 347 7.857885 GCTCCAGCAATATTTTGTACATAGTTC 59.142 37.037 0.00 0.00 41.59 3.01
347 348 7.467267 CGCTCCAGCAATATTTTGTACATAGTT 60.467 37.037 0.00 0.00 42.21 2.24
348 349 6.017934 CGCTCCAGCAATATTTTGTACATAGT 60.018 38.462 0.00 0.00 42.21 2.12
349 350 6.202762 TCGCTCCAGCAATATTTTGTACATAG 59.797 38.462 0.00 0.00 42.21 2.23
350 351 6.018262 GTCGCTCCAGCAATATTTTGTACATA 60.018 38.462 0.00 0.00 42.21 2.29
351 352 4.881273 TCGCTCCAGCAATATTTTGTACAT 59.119 37.500 0.00 0.00 42.21 2.29
352 353 4.094294 GTCGCTCCAGCAATATTTTGTACA 59.906 41.667 0.00 0.00 42.21 2.90
353 354 4.332819 AGTCGCTCCAGCAATATTTTGTAC 59.667 41.667 0.00 0.00 42.21 2.90
354 355 4.513442 AGTCGCTCCAGCAATATTTTGTA 58.487 39.130 0.00 0.00 42.21 2.41
355 356 3.347216 AGTCGCTCCAGCAATATTTTGT 58.653 40.909 0.00 0.00 42.21 2.83
356 357 3.544834 CGAGTCGCTCCAGCAATATTTTG 60.545 47.826 0.00 0.00 42.21 2.44
357 358 2.609459 CGAGTCGCTCCAGCAATATTTT 59.391 45.455 0.00 0.00 42.21 1.82
358 359 2.205074 CGAGTCGCTCCAGCAATATTT 58.795 47.619 0.00 0.00 42.21 1.40
359 360 1.539065 CCGAGTCGCTCCAGCAATATT 60.539 52.381 7.12 0.00 42.21 1.28
360 361 0.032678 CCGAGTCGCTCCAGCAATAT 59.967 55.000 7.12 0.00 42.21 1.28
361 362 1.437573 CCGAGTCGCTCCAGCAATA 59.562 57.895 7.12 0.00 42.21 1.90
362 363 2.185350 CCGAGTCGCTCCAGCAAT 59.815 61.111 7.12 0.00 42.21 3.56
363 364 4.069232 CCCGAGTCGCTCCAGCAA 62.069 66.667 7.12 0.00 42.21 3.91
373 374 1.702491 AAATAAAGCGCGCCCGAGTC 61.702 55.000 30.33 0.00 36.29 3.36
374 375 1.303091 AAAATAAAGCGCGCCCGAGT 61.303 50.000 30.33 9.43 36.29 4.18
375 376 0.861450 CAAAATAAAGCGCGCCCGAG 60.861 55.000 30.33 6.01 36.29 4.63
376 377 1.135731 CAAAATAAAGCGCGCCCGA 59.864 52.632 30.33 13.77 36.29 5.14
377 378 2.504653 GCAAAATAAAGCGCGCCCG 61.505 57.895 30.33 8.37 37.57 6.13
378 379 3.383861 GCAAAATAAAGCGCGCCC 58.616 55.556 30.33 0.16 0.00 6.13
384 385 2.164663 GGCCGCCGCAAAATAAAGC 61.165 57.895 0.00 0.00 36.38 3.51
385 386 1.871789 CGGCCGCCGCAAAATAAAG 60.872 57.895 20.79 0.00 41.17 1.85
386 387 2.179517 CGGCCGCCGCAAAATAAA 59.820 55.556 20.79 0.00 41.17 1.40
414 415 3.764810 TTTTGTGCTTGGCGGTGCG 62.765 57.895 0.00 0.00 0.00 5.34
415 416 2.105930 TTTTGTGCTTGGCGGTGC 59.894 55.556 0.00 0.00 0.00 5.01
416 417 1.591327 GGTTTTGTGCTTGGCGGTG 60.591 57.895 0.00 0.00 0.00 4.94
417 418 1.756561 AGGTTTTGTGCTTGGCGGT 60.757 52.632 0.00 0.00 0.00 5.68
418 419 1.300080 CAGGTTTTGTGCTTGGCGG 60.300 57.895 0.00 0.00 0.00 6.13
419 420 1.300080 CCAGGTTTTGTGCTTGGCG 60.300 57.895 0.00 0.00 0.00 5.69
420 421 4.756630 CCAGGTTTTGTGCTTGGC 57.243 55.556 0.00 0.00 0.00 4.52
421 422 0.032540 GAGCCAGGTTTTGTGCTTGG 59.967 55.000 0.00 0.00 34.69 3.61
422 423 0.746063 TGAGCCAGGTTTTGTGCTTG 59.254 50.000 0.00 0.00 34.69 4.01
423 424 0.746659 GTGAGCCAGGTTTTGTGCTT 59.253 50.000 0.00 0.00 34.69 3.91
424 425 1.109323 GGTGAGCCAGGTTTTGTGCT 61.109 55.000 0.00 0.00 36.44 4.40
425 426 1.363807 GGTGAGCCAGGTTTTGTGC 59.636 57.895 0.00 0.00 34.09 4.57
426 427 1.795170 CGGGTGAGCCAGGTTTTGTG 61.795 60.000 0.08 0.00 36.17 3.33
427 428 1.528309 CGGGTGAGCCAGGTTTTGT 60.528 57.895 0.08 0.00 36.17 2.83
428 429 1.228124 TCGGGTGAGCCAGGTTTTG 60.228 57.895 0.08 0.00 36.17 2.44
429 430 1.228154 GTCGGGTGAGCCAGGTTTT 60.228 57.895 0.08 0.00 36.17 2.43
430 431 2.430367 GTCGGGTGAGCCAGGTTT 59.570 61.111 0.08 0.00 36.17 3.27
431 432 4.003788 CGTCGGGTGAGCCAGGTT 62.004 66.667 0.08 0.00 36.17 3.50
444 445 1.567504 AAAATCAGGATACCGCGTCG 58.432 50.000 4.92 0.00 37.17 5.12
445 446 3.059800 GCTAAAAATCAGGATACCGCGTC 60.060 47.826 4.92 0.00 37.17 5.19
446 447 2.870411 GCTAAAAATCAGGATACCGCGT 59.130 45.455 4.92 0.00 37.17 6.01
447 448 2.096909 CGCTAAAAATCAGGATACCGCG 60.097 50.000 0.00 0.00 37.17 6.46
448 449 2.349532 GCGCTAAAAATCAGGATACCGC 60.350 50.000 0.00 0.00 37.17 5.68
449 450 2.096909 CGCGCTAAAAATCAGGATACCG 60.097 50.000 5.56 0.00 37.17 4.02
450 451 2.223377 CCGCGCTAAAAATCAGGATACC 59.777 50.000 5.56 0.00 37.17 2.73
451 452 2.349532 GCCGCGCTAAAAATCAGGATAC 60.350 50.000 5.56 0.00 0.00 2.24
452 453 1.871039 GCCGCGCTAAAAATCAGGATA 59.129 47.619 5.56 0.00 0.00 2.59
453 454 0.663153 GCCGCGCTAAAAATCAGGAT 59.337 50.000 5.56 0.00 0.00 3.24
454 455 0.392461 AGCCGCGCTAAAAATCAGGA 60.392 50.000 5.56 0.00 36.99 3.86
455 456 0.248215 CAGCCGCGCTAAAAATCAGG 60.248 55.000 5.56 0.00 36.40 3.86
456 457 0.447801 ACAGCCGCGCTAAAAATCAG 59.552 50.000 5.56 0.00 36.40 2.90
457 458 0.878416 AACAGCCGCGCTAAAAATCA 59.122 45.000 5.56 0.00 36.40 2.57
458 459 1.259316 CAACAGCCGCGCTAAAAATC 58.741 50.000 5.56 0.00 36.40 2.17
459 460 0.109319 CCAACAGCCGCGCTAAAAAT 60.109 50.000 5.56 0.00 36.40 1.82
460 461 1.167155 TCCAACAGCCGCGCTAAAAA 61.167 50.000 5.56 0.00 36.40 1.94
461 462 1.573829 CTCCAACAGCCGCGCTAAAA 61.574 55.000 5.56 0.00 36.40 1.52
462 463 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
463 464 2.434185 CTCCAACAGCCGCGCTAA 60.434 61.111 5.56 0.00 36.40 3.09
464 465 3.356639 CTCTCCAACAGCCGCGCTA 62.357 63.158 5.56 0.00 36.40 4.26
465 466 4.749310 CTCTCCAACAGCCGCGCT 62.749 66.667 5.56 0.00 40.77 5.92
468 469 2.317149 ATAGCCTCTCCAACAGCCGC 62.317 60.000 0.00 0.00 0.00 6.53
469 470 1.040646 TATAGCCTCTCCAACAGCCG 58.959 55.000 0.00 0.00 0.00 5.52
470 471 2.170607 TGTTATAGCCTCTCCAACAGCC 59.829 50.000 0.00 0.00 0.00 4.85
471 472 3.543680 TGTTATAGCCTCTCCAACAGC 57.456 47.619 0.00 0.00 0.00 4.40
472 473 7.055667 TCTAATGTTATAGCCTCTCCAACAG 57.944 40.000 0.00 0.00 33.04 3.16
473 474 6.611642 ACTCTAATGTTATAGCCTCTCCAACA 59.388 38.462 0.00 0.00 33.96 3.33
474 475 7.056844 ACTCTAATGTTATAGCCTCTCCAAC 57.943 40.000 0.00 0.00 0.00 3.77
475 476 8.639761 GTTACTCTAATGTTATAGCCTCTCCAA 58.360 37.037 0.00 0.00 0.00 3.53
476 477 7.783119 TGTTACTCTAATGTTATAGCCTCTCCA 59.217 37.037 0.00 0.00 0.00 3.86
477 478 8.179509 TGTTACTCTAATGTTATAGCCTCTCC 57.820 38.462 0.00 0.00 0.00 3.71
481 482 9.057089 GCAATTGTTACTCTAATGTTATAGCCT 57.943 33.333 7.40 0.00 0.00 4.58
482 483 8.290325 GGCAATTGTTACTCTAATGTTATAGCC 58.710 37.037 7.40 0.00 0.00 3.93
483 484 8.009974 CGGCAATTGTTACTCTAATGTTATAGC 58.990 37.037 7.40 0.00 0.00 2.97
484 485 8.495949 CCGGCAATTGTTACTCTAATGTTATAG 58.504 37.037 7.40 0.00 0.00 1.31
485 486 7.041644 GCCGGCAATTGTTACTCTAATGTTATA 60.042 37.037 24.80 0.00 0.00 0.98
486 487 6.238648 GCCGGCAATTGTTACTCTAATGTTAT 60.239 38.462 24.80 0.00 0.00 1.89
560 562 2.009774 GTGATTGCTATCGTTGTGGCT 58.990 47.619 3.70 0.00 33.23 4.75
561 563 1.737236 TGTGATTGCTATCGTTGTGGC 59.263 47.619 3.70 0.00 33.23 5.01
562 564 4.621068 ATTGTGATTGCTATCGTTGTGG 57.379 40.909 3.70 0.00 33.23 4.17
563 565 7.374228 GTCATAATTGTGATTGCTATCGTTGTG 59.626 37.037 8.23 5.21 33.23 3.33
564 566 7.280876 AGTCATAATTGTGATTGCTATCGTTGT 59.719 33.333 8.23 0.00 33.23 3.32
565 567 7.633621 AGTCATAATTGTGATTGCTATCGTTG 58.366 34.615 8.23 0.00 33.23 4.10
566 568 7.041780 GGAGTCATAATTGTGATTGCTATCGTT 60.042 37.037 8.23 0.00 33.23 3.85
567 569 6.425114 GGAGTCATAATTGTGATTGCTATCGT 59.575 38.462 8.23 0.00 33.23 3.73
568 570 6.128445 GGGAGTCATAATTGTGATTGCTATCG 60.128 42.308 15.98 0.00 33.23 2.92
569 571 6.150140 GGGGAGTCATAATTGTGATTGCTATC 59.850 42.308 15.98 0.76 0.00 2.08
570 572 6.006449 GGGGAGTCATAATTGTGATTGCTAT 58.994 40.000 15.98 0.00 0.00 2.97
571 573 5.376625 GGGGAGTCATAATTGTGATTGCTA 58.623 41.667 15.98 0.00 0.00 3.49
572 574 4.210331 GGGGAGTCATAATTGTGATTGCT 58.790 43.478 15.98 6.39 0.00 3.91
573 575 3.319122 GGGGGAGTCATAATTGTGATTGC 59.681 47.826 8.23 9.19 0.00 3.56
592 594 1.000359 GACTGATTGGGGTTGGGGG 60.000 63.158 0.00 0.00 0.00 5.40
621 623 2.796593 TCTGATGATTGCGTTATGCTCG 59.203 45.455 0.00 0.00 46.63 5.03
622 624 3.059325 GGTCTGATGATTGCGTTATGCTC 60.059 47.826 0.00 0.00 46.63 4.26
623 625 2.874701 GGTCTGATGATTGCGTTATGCT 59.125 45.455 0.00 0.00 46.63 3.79
624 626 2.348872 CGGTCTGATGATTGCGTTATGC 60.349 50.000 0.00 0.00 46.70 3.14
625 627 3.060272 GTCGGTCTGATGATTGCGTTATG 60.060 47.826 0.00 0.00 0.00 1.90
626 628 3.123804 GTCGGTCTGATGATTGCGTTAT 58.876 45.455 0.00 0.00 0.00 1.89
627 629 2.536365 GTCGGTCTGATGATTGCGTTA 58.464 47.619 0.00 0.00 0.00 3.18
1599 1963 2.809010 GAGCGGTAGTGCCTCTCC 59.191 66.667 6.00 0.00 41.95 3.71
1639 2003 1.480954 AGGCATTGGAGTTCGTATCGT 59.519 47.619 0.00 0.00 0.00 3.73
1640 2004 2.128035 GAGGCATTGGAGTTCGTATCG 58.872 52.381 0.00 0.00 0.00 2.92
1641 2005 3.179443 TGAGGCATTGGAGTTCGTATC 57.821 47.619 0.00 0.00 0.00 2.24
1642 2006 3.845781 ATGAGGCATTGGAGTTCGTAT 57.154 42.857 0.00 0.00 0.00 3.06
1658 2022 0.242286 CGATGAGGGACGCCTATGAG 59.758 60.000 0.00 0.00 0.00 2.90
1667 2031 1.674221 GCTGATATGGCGATGAGGGAC 60.674 57.143 0.00 0.00 0.00 4.46
1708 2074 1.127701 GCTCAGAGCATTCGATCGAC 58.872 55.000 19.26 6.71 41.89 4.20
1752 2124 0.179121 AACAGCACGTCAGTTCGTCA 60.179 50.000 0.00 0.00 42.27 4.35
1894 2266 1.602888 CCTGCAGGCTGCTCTTGTT 60.603 57.895 36.50 0.00 45.31 2.83
2047 2419 0.468029 CTCTTGTGGGGCTTGTTGGT 60.468 55.000 0.00 0.00 0.00 3.67
2138 2513 0.815213 GCTATTGCTGGTGCCGATGA 60.815 55.000 0.00 0.00 38.71 2.92
2403 2794 0.459759 GTAGAAGCGTAGGTGTGGCC 60.460 60.000 0.00 0.00 39.47 5.36
2455 2846 1.877165 GGCGTAGTAGCGTGGCTTC 60.877 63.158 0.00 0.00 40.44 3.86
2457 2848 3.834799 GGGCGTAGTAGCGTGGCT 61.835 66.667 0.00 0.00 43.41 4.75
2510 2905 3.217017 CGGATCTTCGGCGGAGGA 61.217 66.667 16.51 8.54 32.32 3.71
2545 2940 3.306088 GCACTGAACTGAACAGCTACCTA 60.306 47.826 1.46 0.00 38.74 3.08
2546 2941 2.548920 GCACTGAACTGAACAGCTACCT 60.549 50.000 1.46 0.00 38.74 3.08
2547 2942 1.801178 GCACTGAACTGAACAGCTACC 59.199 52.381 1.46 0.00 38.74 3.18
2548 2943 2.734079 GAGCACTGAACTGAACAGCTAC 59.266 50.000 1.46 0.00 38.74 3.58
2549 2944 2.630098 AGAGCACTGAACTGAACAGCTA 59.370 45.455 1.46 0.00 38.74 3.32
2550 2945 1.415659 AGAGCACTGAACTGAACAGCT 59.584 47.619 1.46 0.00 38.74 4.24
2551 2946 1.797635 GAGAGCACTGAACTGAACAGC 59.202 52.381 1.46 0.00 38.74 4.40
2552 2947 2.411904 GGAGAGCACTGAACTGAACAG 58.588 52.381 0.00 0.00 40.68 3.16
2553 2948 1.070758 GGGAGAGCACTGAACTGAACA 59.929 52.381 0.00 0.00 0.00 3.18
2554 2949 1.609320 GGGGAGAGCACTGAACTGAAC 60.609 57.143 0.00 0.00 0.00 3.18
2556 2951 0.178921 AGGGGAGAGCACTGAACTGA 60.179 55.000 0.00 0.00 0.00 3.41
2557 2952 0.036577 CAGGGGAGAGCACTGAACTG 60.037 60.000 0.00 0.00 34.21 3.16
2558 2953 1.197430 CCAGGGGAGAGCACTGAACT 61.197 60.000 0.00 0.00 34.21 3.01
2596 2993 3.054434 AGGGTTCGATGATTTCCACATGA 60.054 43.478 0.00 0.00 0.00 3.07
2753 3363 8.918961 AGTGAGAGTGACTAGAAATTTTATCG 57.081 34.615 0.00 0.00 0.00 2.92
2757 3367 7.039923 TCGGTAGTGAGAGTGACTAGAAATTTT 60.040 37.037 0.00 0.00 0.00 1.82
2776 3394 2.235402 ACGTGGATGGAAATTCGGTAGT 59.765 45.455 0.00 0.00 0.00 2.73
2822 3440 1.201414 CACCTGCGACAAAATAACCCC 59.799 52.381 0.00 0.00 0.00 4.95
2824 3442 2.095415 GGTCACCTGCGACAAAATAACC 60.095 50.000 0.00 0.00 37.66 2.85
2838 3457 0.613777 GGACTCCATTTCGGTCACCT 59.386 55.000 0.00 0.00 35.57 4.00
2864 3483 4.657013 ACCCCAGCTAAGAAAAGAAAGAG 58.343 43.478 0.00 0.00 0.00 2.85
2900 3525 1.334243 GCTACTACCTCTACGTGCCAG 59.666 57.143 0.00 0.00 0.00 4.85
2913 3542 4.201724 CGCTTCCAAATTGTCTGCTACTAC 60.202 45.833 0.00 0.00 0.00 2.73
2914 3543 3.932710 CGCTTCCAAATTGTCTGCTACTA 59.067 43.478 0.00 0.00 0.00 1.82
2915 3544 2.744202 CGCTTCCAAATTGTCTGCTACT 59.256 45.455 0.00 0.00 0.00 2.57
2935 3564 1.083489 TACCAGCGGCATTTTCTTCG 58.917 50.000 1.45 0.00 0.00 3.79
2962 3594 0.528924 TATCCTGCGTTGCGTGTAGT 59.471 50.000 0.00 0.00 0.00 2.73
3039 3671 0.581529 GCTACGCGCTGCATTATTGA 59.418 50.000 17.16 0.00 35.14 2.57
3059 3691 4.527583 CCCTCCTGCTGCTCGCTC 62.528 72.222 0.00 0.00 40.11 5.03
3138 3773 1.069358 TCCGAACATTGTTTTTGGCCC 59.931 47.619 0.00 0.00 0.00 5.80
3163 3798 1.531912 CTACTTACGCCGAACTGACG 58.468 55.000 0.00 0.00 0.00 4.35
3165 3800 0.179181 CGCTACTTACGCCGAACTGA 60.179 55.000 0.00 0.00 0.00 3.41
3213 3848 1.973515 TCAGCTGACACCTGATGAACT 59.026 47.619 13.74 0.00 34.49 3.01
3231 3866 2.996249 GAGTTGCTCCATCAGGATCA 57.004 50.000 0.00 0.00 44.70 2.92
3285 3921 3.612479 CGGTGGCAGAAGAAAAATGAAGG 60.612 47.826 0.00 0.00 0.00 3.46
3322 3958 1.270518 ACTACCATGGATGCTCATCGC 60.271 52.381 21.47 0.00 38.69 4.58
3323 3959 2.827800 ACTACCATGGATGCTCATCG 57.172 50.000 21.47 0.00 38.69 3.84
3324 3960 4.881019 ACTACTACCATGGATGCTCATC 57.119 45.455 21.47 1.35 37.11 2.92
3325 3961 5.645201 TCTACTACTACCATGGATGCTCAT 58.355 41.667 21.47 0.00 0.00 2.90
3326 3962 5.061721 TCTACTACTACCATGGATGCTCA 57.938 43.478 21.47 0.00 0.00 4.26
3327 3963 6.597832 ATTCTACTACTACCATGGATGCTC 57.402 41.667 21.47 0.00 0.00 4.26
3328 3964 7.471041 TCTATTCTACTACTACCATGGATGCT 58.529 38.462 21.47 0.00 0.00 3.79
3329 3965 7.704578 TCTATTCTACTACTACCATGGATGC 57.295 40.000 21.47 0.00 0.00 3.91
3331 3967 8.754080 GCATTCTATTCTACTACTACCATGGAT 58.246 37.037 21.47 5.32 0.00 3.41
3332 3968 7.728532 TGCATTCTATTCTACTACTACCATGGA 59.271 37.037 21.47 0.67 0.00 3.41
3333 3969 7.815068 GTGCATTCTATTCTACTACTACCATGG 59.185 40.741 11.19 11.19 0.00 3.66
3334 3970 7.539022 CGTGCATTCTATTCTACTACTACCATG 59.461 40.741 0.00 0.00 0.00 3.66
3335 3971 7.309255 CCGTGCATTCTATTCTACTACTACCAT 60.309 40.741 0.00 0.00 0.00 3.55
3336 3972 6.016527 CCGTGCATTCTATTCTACTACTACCA 60.017 42.308 0.00 0.00 0.00 3.25
3337 3973 6.380190 CCGTGCATTCTATTCTACTACTACC 58.620 44.000 0.00 0.00 0.00 3.18
3338 3974 6.380190 CCCGTGCATTCTATTCTACTACTAC 58.620 44.000 0.00 0.00 0.00 2.73
3339 3975 5.475909 CCCCGTGCATTCTATTCTACTACTA 59.524 44.000 0.00 0.00 0.00 1.82
3340 3976 4.281182 CCCCGTGCATTCTATTCTACTACT 59.719 45.833 0.00 0.00 0.00 2.57
3341 3977 4.557205 CCCCGTGCATTCTATTCTACTAC 58.443 47.826 0.00 0.00 0.00 2.73
3342 3978 3.576982 CCCCCGTGCATTCTATTCTACTA 59.423 47.826 0.00 0.00 0.00 1.82
3343 3979 2.368875 CCCCCGTGCATTCTATTCTACT 59.631 50.000 0.00 0.00 0.00 2.57
3344 3980 2.767505 CCCCCGTGCATTCTATTCTAC 58.232 52.381 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.