Multiple sequence alignment - TraesCS3D01G169200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G169200 chr3D 100.000 9808 0 0 1 9808 145202515 145192708 0.000000e+00 18113.0
1 TraesCS3D01G169200 chr3D 97.515 3179 73 4 4730 7905 38502379 38505554 0.000000e+00 5428.0
2 TraesCS3D01G169200 chr3D 97.563 2052 20 5 834 2878 144779374 144781402 0.000000e+00 3485.0
3 TraesCS3D01G169200 chr3D 94.190 568 21 4 3152 3714 144781400 144781960 0.000000e+00 856.0
4 TraesCS3D01G169200 chr3D 96.985 398 8 3 3794 4189 144781957 144782352 0.000000e+00 665.0
5 TraesCS3D01G169200 chr3D 95.745 94 3 1 4180 4273 144787026 144787118 6.140000e-32 150.0
6 TraesCS3D01G169200 chr3D 91.837 98 6 2 3705 3800 428058621 428058524 1.720000e-27 135.0
7 TraesCS3D01G169200 chr3D 96.053 76 3 0 769 844 144759535 144759610 3.720000e-24 124.0
8 TraesCS3D01G169200 chr3D 84.211 95 11 3 4291 4384 570533244 570533153 1.360000e-13 89.8
9 TraesCS3D01G169200 chr2D 97.738 3183 64 4 4725 7905 106332700 106329524 0.000000e+00 5472.0
10 TraesCS3D01G169200 chr2D 83.797 611 81 11 9211 9808 69406578 69407183 1.850000e-156 564.0
11 TraesCS3D01G169200 chr2D 89.051 137 8 1 4496 4625 140632148 140632012 7.880000e-36 163.0
12 TraesCS3D01G169200 chr2D 91.089 101 8 1 4495 4594 551340064 551339964 1.720000e-27 135.0
13 TraesCS3D01G169200 chr5B 97.790 3168 64 4 4740 7905 452128526 452125363 0.000000e+00 5457.0
14 TraesCS3D01G169200 chr5B 95.683 278 10 2 2875 3152 320411186 320410911 6.990000e-121 446.0
15 TraesCS3D01G169200 chr5B 94.982 279 14 0 2875 3153 675427291 675427013 1.170000e-118 438.0
16 TraesCS3D01G169200 chr5B 94.444 90 4 1 3709 3798 12859162 12859250 4.780000e-28 137.0
17 TraesCS3D01G169200 chr5B 91.753 97 8 0 4496 4592 85905192 85905096 1.720000e-27 135.0
18 TraesCS3D01G169200 chr5B 92.473 93 7 0 4502 4594 85905091 85904999 6.180000e-27 134.0
19 TraesCS3D01G169200 chr5B 92.553 94 5 2 4502 4594 537600136 537600044 6.180000e-27 134.0
20 TraesCS3D01G169200 chr7A 97.612 3183 69 5 4725 7905 109351959 109348782 0.000000e+00 5450.0
21 TraesCS3D01G169200 chr7A 90.358 1286 81 15 8521 9800 727010625 727009377 0.000000e+00 1648.0
22 TraesCS3D01G169200 chr7A 94.737 285 12 1 2873 3154 291809780 291810064 3.250000e-119 440.0
23 TraesCS3D01G169200 chr7A 81.662 349 25 17 7906 8217 727011129 727010783 4.550000e-63 254.0
24 TraesCS3D01G169200 chr7A 85.098 255 26 6 4496 4739 727011356 727011103 5.880000e-62 250.0
25 TraesCS3D01G169200 chr7A 89.524 105 11 0 4490 4594 239891868 239891972 6.180000e-27 134.0
26 TraesCS3D01G169200 chr1A 97.549 3182 74 2 4725 7905 517045162 517048340 0.000000e+00 5441.0
27 TraesCS3D01G169200 chr1A 94.891 274 13 1 2875 3148 263624411 263624683 2.530000e-115 427.0
28 TraesCS3D01G169200 chr1A 94.265 279 14 2 2875 3152 564527656 564527933 9.100000e-115 425.0
29 TraesCS3D01G169200 chr1A 93.929 280 17 0 2873 3152 53021987 53022266 3.270000e-114 424.0
30 TraesCS3D01G169200 chr3B 97.547 3180 73 3 4728 7905 341950076 341953252 0.000000e+00 5435.0
31 TraesCS3D01G169200 chr3B 97.484 3180 75 3 4728 7905 419557428 419560604 0.000000e+00 5424.0
32 TraesCS3D01G169200 chr3B 94.656 2882 99 30 16 2878 205466482 205463637 0.000000e+00 4418.0
33 TraesCS3D01G169200 chr3B 91.791 1547 60 32 1 1514 205693071 205691559 0.000000e+00 2091.0
34 TraesCS3D01G169200 chr3B 96.667 720 18 3 2163 2878 205686215 205685498 0.000000e+00 1192.0
35 TraesCS3D01G169200 chr3B 93.040 704 28 10 3796 4497 205684932 205684248 0.000000e+00 1009.0
36 TraesCS3D01G169200 chr3B 96.996 566 16 1 3152 3716 205463639 205463074 0.000000e+00 950.0
37 TraesCS3D01G169200 chr3B 94.561 570 25 4 3152 3716 205685500 205684932 0.000000e+00 876.0
38 TraesCS3D01G169200 chr3B 91.797 512 19 9 3988 4497 205462954 205462464 0.000000e+00 691.0
39 TraesCS3D01G169200 chr3B 81.426 603 95 9 8614 9215 807284104 807283518 2.480000e-130 477.0
40 TraesCS3D01G169200 chr3B 75.364 893 157 34 8771 9649 697086657 697087500 1.200000e-98 372.0
41 TraesCS3D01G169200 chr3B 98.291 117 0 2 3796 3910 205463074 205462958 4.640000e-48 204.0
42 TraesCS3D01G169200 chr3B 90.196 102 10 0 3703 3804 229298779 229298678 6.180000e-27 134.0
43 TraesCS3D01G169200 chr4B 97.517 3181 73 4 4725 7903 295676234 295679410 0.000000e+00 5432.0
44 TraesCS3D01G169200 chr4B 94.306 281 14 2 2874 3153 406347682 406347403 7.040000e-116 429.0
45 TraesCS3D01G169200 chr4B 94.245 278 16 0 2875 3152 629372481 629372758 9.100000e-115 425.0
46 TraesCS3D01G169200 chr4B 90.000 100 10 0 4495 4594 286779728 286779629 7.990000e-26 130.0
47 TraesCS3D01G169200 chr3A 97.456 3184 74 5 4725 7905 387485593 387488772 0.000000e+00 5424.0
48 TraesCS3D01G169200 chr6D 86.899 1977 128 40 7906 9808 304096147 304094228 0.000000e+00 2095.0
49 TraesCS3D01G169200 chr6D 89.086 1356 92 21 7906 9215 2812317 2813662 0.000000e+00 1633.0
50 TraesCS3D01G169200 chr6D 94.526 274 13 2 2877 3150 467827172 467827443 1.180000e-113 422.0
51 TraesCS3D01G169200 chr6D 92.657 286 18 2 2867 3150 262233710 262233426 9.170000e-110 409.0
52 TraesCS3D01G169200 chr6D 84.190 253 20 10 4495 4733 2812091 2812337 2.760000e-55 228.0
53 TraesCS3D01G169200 chr6D 83.203 256 24 14 4496 4739 304096369 304096121 5.970000e-52 217.0
54 TraesCS3D01G169200 chr6D 95.349 86 4 0 3712 3797 142846312 142846397 4.780000e-28 137.0
55 TraesCS3D01G169200 chr6D 91.837 98 6 2 3705 3800 93317720 93317817 1.720000e-27 135.0
56 TraesCS3D01G169200 chr6D 90.816 98 7 2 3705 3800 48061878 48061781 7.990000e-26 130.0
57 TraesCS3D01G169200 chr6D 90.816 98 7 2 3705 3800 115754574 115754477 7.990000e-26 130.0
58 TraesCS3D01G169200 chr6D 94.118 85 5 0 3713 3797 465043922 465043838 7.990000e-26 130.0
59 TraesCS3D01G169200 chr6D 91.954 87 7 0 3713 3799 448576987 448577073 1.340000e-23 122.0
60 TraesCS3D01G169200 chr6D 90.323 93 7 2 3706 3797 7477804 7477713 4.810000e-23 121.0
61 TraesCS3D01G169200 chr6D 91.011 89 7 1 3709 3797 95724061 95724148 1.730000e-22 119.0
62 TraesCS3D01G169200 chr6D 91.765 85 7 0 3713 3797 129710133 129710217 1.730000e-22 119.0
63 TraesCS3D01G169200 chr6D 91.860 86 6 1 3712 3797 388132059 388131975 1.730000e-22 119.0
64 TraesCS3D01G169200 chr6D 89.130 92 10 0 3713 3804 95724148 95724057 2.240000e-21 115.0
65 TraesCS3D01G169200 chrUn 90.054 1287 84 15 8521 9800 83682368 83681119 0.000000e+00 1628.0
66 TraesCS3D01G169200 chrUn 91.736 484 29 6 8521 8999 373599957 373600434 0.000000e+00 662.0
67 TraesCS3D01G169200 chrUn 91.736 484 29 6 8521 8999 399826286 399825809 0.000000e+00 662.0
68 TraesCS3D01G169200 chrUn 95.668 277 12 0 2875 3151 34631121 34630845 6.990000e-121 446.0
69 TraesCS3D01G169200 chrUn 94.585 277 15 0 2874 3150 87032935 87033211 7.040000e-116 429.0
70 TraesCS3D01G169200 chrUn 94.585 277 15 0 2874 3150 445906443 445906719 7.040000e-116 429.0
71 TraesCS3D01G169200 chrUn 94.545 275 13 2 2878 3151 348465502 348465229 3.270000e-114 424.0
72 TraesCS3D01G169200 chrUn 92.466 292 17 4 2870 3158 40187385 40187674 7.090000e-111 412.0
73 TraesCS3D01G169200 chrUn 93.214 280 17 2 2877 3155 62222262 62222540 2.550000e-110 411.0
74 TraesCS3D01G169200 chrUn 93.141 277 18 1 2875 3150 63609296 63609020 1.190000e-108 405.0
75 TraesCS3D01G169200 chrUn 92.832 279 18 2 2877 3154 34137546 34137269 4.270000e-108 403.0
76 TraesCS3D01G169200 chrUn 92.473 279 19 2 2875 3152 31310967 31310690 1.980000e-106 398.0
77 TraesCS3D01G169200 chrUn 88.073 218 14 5 8010 8217 83682741 83682526 2.120000e-61 248.0
78 TraesCS3D01G169200 chrUn 88.073 218 14 5 8010 8217 373599584 373599799 2.120000e-61 248.0
79 TraesCS3D01G169200 chrUn 88.073 218 14 5 8010 8217 399826659 399826444 2.120000e-61 248.0
80 TraesCS3D01G169200 chrUn 90.909 99 9 0 4496 4594 333352024 333351926 6.180000e-27 134.0
81 TraesCS3D01G169200 chrUn 88.298 94 10 1 3705 3797 12516546 12516639 2.900000e-20 111.0
82 TraesCS3D01G169200 chrUn 88.043 92 10 1 3713 3804 71667174 71667084 3.750000e-19 108.0
83 TraesCS3D01G169200 chrUn 89.535 86 6 2 3713 3798 65789075 65789157 1.350000e-18 106.0
84 TraesCS3D01G169200 chrUn 88.636 88 7 2 3710 3797 65789159 65789075 4.850000e-18 104.0
85 TraesCS3D01G169200 chrUn 86.667 90 10 2 3713 3801 222975854 222975766 2.250000e-16 99.0
86 TraesCS3D01G169200 chrUn 85.567 97 10 4 3704 3798 242405202 242405296 2.250000e-16 99.0
87 TraesCS3D01G169200 chrUn 86.667 90 10 2 3713 3801 303647988 303647900 2.250000e-16 99.0
88 TraesCS3D01G169200 chrUn 86.667 90 8 4 3713 3800 100547552 100547465 8.110000e-16 97.1
89 TraesCS3D01G169200 chrUn 85.263 95 13 1 3713 3806 108327677 108327583 8.110000e-16 97.1
90 TraesCS3D01G169200 chrUn 84.536 97 12 3 3701 3797 222975761 222975854 1.050000e-14 93.5
91 TraesCS3D01G169200 chrUn 85.882 85 12 0 3713 3797 81299914 81299998 3.770000e-14 91.6
92 TraesCS3D01G169200 chrUn 87.013 77 10 0 4309 4385 19597661 19597585 4.880000e-13 87.9
93 TraesCS3D01G169200 chr6B 86.259 1259 97 29 7906 9095 469771317 469770066 0.000000e+00 1297.0
94 TraesCS3D01G169200 chr6B 88.483 712 47 7 9098 9808 469769758 469769081 0.000000e+00 828.0
95 TraesCS3D01G169200 chr6B 96.350 274 10 0 2877 3150 226389852 226390125 1.500000e-122 451.0
96 TraesCS3D01G169200 chr6B 95.018 281 14 0 2875 3155 478751571 478751291 9.040000e-120 442.0
97 TraesCS3D01G169200 chr6B 83.529 255 24 10 4496 4739 469771538 469771291 1.280000e-53 222.0
98 TraesCS3D01G169200 chr6B 77.193 399 53 23 8978 9372 416094221 416093857 2.160000e-46 198.0
99 TraesCS3D01G169200 chr6B 90.909 99 9 0 4496 4594 24968313 24968411 6.180000e-27 134.0
100 TraesCS3D01G169200 chr6B 84.946 93 10 3 4291 4382 93341442 93341531 3.770000e-14 91.6
101 TraesCS3D01G169200 chr4D 96.429 280 10 0 2875 3154 437030171 437030450 6.940000e-126 462.0
102 TraesCS3D01G169200 chr4D 96.350 274 10 0 2877 3150 52629621 52629348 1.500000e-122 451.0
103 TraesCS3D01G169200 chr4D 93.885 278 15 2 2875 3152 464998113 464998388 1.520000e-112 418.0
104 TraesCS3D01G169200 chr4D 95.349 86 4 0 3713 3798 492602152 492602237 4.780000e-28 137.0
105 TraesCS3D01G169200 chr4D 91.837 98 6 2 3705 3800 50531352 50531449 1.720000e-27 135.0
106 TraesCS3D01G169200 chr4D 91.837 98 6 2 3705 3800 53611781 53611878 1.720000e-27 135.0
107 TraesCS3D01G169200 chr4D 90.816 98 7 2 3705 3800 31895457 31895554 7.990000e-26 130.0
108 TraesCS3D01G169200 chr2B 96.679 271 9 0 2877 3147 160951596 160951866 1.500000e-122 451.0
109 TraesCS3D01G169200 chr2B 95.390 282 12 1 2873 3154 714072473 714072753 1.940000e-121 448.0
110 TraesCS3D01G169200 chr2B 95.324 278 13 0 2877 3154 25353545 25353822 9.040000e-120 442.0
111 TraesCS3D01G169200 chr2B 92.079 101 7 1 4495 4594 62379470 62379570 3.690000e-29 141.0
112 TraesCS3D01G169200 chr7D 95.324 278 12 1 2875 3152 282878110 282878386 3.250000e-119 440.0
113 TraesCS3D01G169200 chr7D 85.039 254 30 5 8753 9003 429580181 429579933 1.640000e-62 252.0
114 TraesCS3D01G169200 chr7D 91.837 98 6 2 3705 3800 194988615 194988518 1.720000e-27 135.0
115 TraesCS3D01G169200 chr7D 90.909 99 9 0 4496 4594 541955349 541955251 6.180000e-27 134.0
116 TraesCS3D01G169200 chr6A 95.324 278 12 1 2875 3152 531702033 531702309 3.250000e-119 440.0
117 TraesCS3D01G169200 chr6A 94.624 279 13 2 2875 3152 2175085 2174808 1.960000e-116 431.0
118 TraesCS3D01G169200 chr6A 93.471 291 14 5 2861 3150 373666870 373666584 2.530000e-115 427.0
119 TraesCS3D01G169200 chr1B 94.662 281 14 1 2872 3152 354582729 354583008 1.510000e-117 435.0
120 TraesCS3D01G169200 chr1B 89.796 98 10 0 4497 4594 6499125 6499222 1.030000e-24 126.0
121 TraesCS3D01G169200 chr4A 96.591 88 2 1 3711 3798 743181470 743181556 2.850000e-30 145.0
122 TraesCS3D01G169200 chr4A 96.591 88 2 1 3711 3798 743224615 743224701 2.850000e-30 145.0
123 TraesCS3D01G169200 chr1D 94.624 93 5 0 4502 4594 21882337 21882245 2.850000e-30 145.0
124 TraesCS3D01G169200 chr1D 91.837 98 6 2 3705 3800 381152680 381152583 1.720000e-27 135.0
125 TraesCS3D01G169200 chr5D 91.837 98 6 2 3705 3800 211772174 211772077 1.720000e-27 135.0
126 TraesCS3D01G169200 chr5D 90.909 99 9 0 4496 4594 412585932 412586030 6.180000e-27 134.0
127 TraesCS3D01G169200 chr5D 84.615 117 10 7 4486 4594 559368703 559368587 1.040000e-19 110.0
128 TraesCS3D01G169200 chr5D 87.097 93 6 2 4502 4594 70201439 70201353 6.270000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G169200 chr3D 145192708 145202515 9807 True 18113.000000 18113 100.000000 1 9808 1 chr3D.!!$R1 9807
1 TraesCS3D01G169200 chr3D 38502379 38505554 3175 False 5428.000000 5428 97.515000 4730 7905 1 chr3D.!!$F1 3175
2 TraesCS3D01G169200 chr3D 144779374 144782352 2978 False 1668.666667 3485 96.246000 834 4189 3 chr3D.!!$F4 3355
3 TraesCS3D01G169200 chr2D 106329524 106332700 3176 True 5472.000000 5472 97.738000 4725 7905 1 chr2D.!!$R1 3180
4 TraesCS3D01G169200 chr2D 69406578 69407183 605 False 564.000000 564 83.797000 9211 9808 1 chr2D.!!$F1 597
5 TraesCS3D01G169200 chr5B 452125363 452128526 3163 True 5457.000000 5457 97.790000 4740 7905 1 chr5B.!!$R2 3165
6 TraesCS3D01G169200 chr7A 109348782 109351959 3177 True 5450.000000 5450 97.612000 4725 7905 1 chr7A.!!$R1 3180
7 TraesCS3D01G169200 chr7A 727009377 727011356 1979 True 717.333333 1648 85.706000 4496 9800 3 chr7A.!!$R2 5304
8 TraesCS3D01G169200 chr1A 517045162 517048340 3178 False 5441.000000 5441 97.549000 4725 7905 1 chr1A.!!$F3 3180
9 TraesCS3D01G169200 chr3B 341950076 341953252 3176 False 5435.000000 5435 97.547000 4728 7905 1 chr3B.!!$F1 3177
10 TraesCS3D01G169200 chr3B 419557428 419560604 3176 False 5424.000000 5424 97.484000 4728 7905 1 chr3B.!!$F2 3177
11 TraesCS3D01G169200 chr3B 205691559 205693071 1512 True 2091.000000 2091 91.791000 1 1514 1 chr3B.!!$R1 1513
12 TraesCS3D01G169200 chr3B 205462464 205466482 4018 True 1565.750000 4418 95.435000 16 4497 4 chr3B.!!$R4 4481
13 TraesCS3D01G169200 chr3B 205684248 205686215 1967 True 1025.666667 1192 94.756000 2163 4497 3 chr3B.!!$R5 2334
14 TraesCS3D01G169200 chr3B 807283518 807284104 586 True 477.000000 477 81.426000 8614 9215 1 chr3B.!!$R3 601
15 TraesCS3D01G169200 chr3B 697086657 697087500 843 False 372.000000 372 75.364000 8771 9649 1 chr3B.!!$F3 878
16 TraesCS3D01G169200 chr4B 295676234 295679410 3176 False 5432.000000 5432 97.517000 4725 7903 1 chr4B.!!$F1 3178
17 TraesCS3D01G169200 chr3A 387485593 387488772 3179 False 5424.000000 5424 97.456000 4725 7905 1 chr3A.!!$F1 3180
18 TraesCS3D01G169200 chr6D 304094228 304096369 2141 True 1156.000000 2095 85.051000 4496 9808 2 chr6D.!!$R8 5312
19 TraesCS3D01G169200 chr6D 2812091 2813662 1571 False 930.500000 1633 86.638000 4495 9215 2 chr6D.!!$F7 4720
20 TraesCS3D01G169200 chrUn 83681119 83682741 1622 True 938.000000 1628 89.063500 8010 9800 2 chrUn.!!$R14 1790
21 TraesCS3D01G169200 chrUn 373599584 373600434 850 False 455.000000 662 89.904500 8010 8999 2 chrUn.!!$F10 989
22 TraesCS3D01G169200 chrUn 399825809 399826659 850 True 455.000000 662 89.904500 8010 8999 2 chrUn.!!$R15 989
23 TraesCS3D01G169200 chr6B 469769081 469771538 2457 True 782.333333 1297 86.090333 4496 9808 3 chr6B.!!$R3 5312

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
890 948 0.105778 CTTCCCCTCTCCGCTGAATC 59.894 60.000 0.00 0.00 0.00 2.52 F
933 991 1.011333 GACCTTCCTCTCGAGTCTCG 58.989 60.000 16.33 16.33 42.10 4.04 F
2895 2960 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40 F
3526 3592 1.005924 CCAAATGAGTACCAGGGGCTT 59.994 52.381 0.00 0.00 0.00 4.35 F
3660 3726 2.037902 TCGTATCACTGGCTCCACAAAA 59.962 45.455 0.00 0.00 0.00 2.44 F
4673 4766 1.076332 CTTTCGCCTTCCGTAACTGG 58.924 55.000 0.00 0.00 38.35 4.00 F
5663 5758 0.036388 TAAGGGCTCAAAGCTGACCG 60.036 55.000 0.00 0.00 41.99 4.79 F
5787 5882 1.187087 TTGCCGGGACTTTGTGTTTT 58.813 45.000 2.18 0.00 0.00 2.43 F
7530 7626 0.032515 TATCCTCCACCTCCTTCGCA 60.033 55.000 0.00 0.00 0.00 5.10 F
7968 8075 0.758685 CCCGCTCCTCTCTTGATCCT 60.759 60.000 0.00 0.00 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2876 2941 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19 R
2928 2993 1.099689 CGAGTTCTCTCTCCTCCACC 58.900 60.000 0.00 0.00 38.45 4.61 R
3781 3851 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37 R
4354 4426 1.137872 ACGAGTGGATGGAAGATGCTC 59.862 52.381 0.00 0.00 0.00 4.26 R
4699 4794 1.278127 CCAGAGTAACCGTGGTCCATT 59.722 52.381 0.00 0.00 0.00 3.16 R
6270 6366 0.109319 GTTTTGTGCGGCGAATCCAT 60.109 50.000 12.98 0.00 34.01 3.41 R
6740 6836 0.174845 CATTCGTAAGGTGGCCTCGA 59.825 55.000 3.32 2.02 30.89 4.04 R
7680 7777 1.207085 GACTCGACGAGTGCGAAGT 59.793 57.895 33.68 9.37 43.53 3.01 R
8356 8556 0.039798 GTGTGTGTGCCATCTTGCAG 60.040 55.000 0.00 0.00 43.02 4.41 R
9554 10103 1.797025 GTGGAACTGGAGTACACTGC 58.203 55.000 0.00 0.00 34.93 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 232 7.759433 ACTCAAAAACTGTTCAACCATGTAAAG 59.241 33.333 0.00 0.00 0.00 1.85
259 286 4.485163 GACTCAATTTTTGGTTCATCGGG 58.515 43.478 0.00 0.00 0.00 5.14
263 290 5.675538 TCAATTTTTGGTTCATCGGGTTTT 58.324 33.333 0.00 0.00 0.00 2.43
387 414 9.949174 AAAAAGTGTCCATTGAATTAAAAATGC 57.051 25.926 3.53 0.00 33.34 3.56
392 419 6.925718 TGTCCATTGAATTAAAAATGCGTTCA 59.074 30.769 0.00 0.00 33.34 3.18
459 487 4.600692 AATGTTCATCGGATCGGATACA 57.399 40.909 14.73 15.83 0.00 2.29
545 577 9.697250 TGTTCGCTAAAATTAGAAATATGTTCG 57.303 29.630 4.39 0.00 32.47 3.95
637 669 3.703001 AGAACTTGTTGTGATCCCGAT 57.297 42.857 0.00 0.00 0.00 4.18
640 672 4.827284 AGAACTTGTTGTGATCCCGATTTT 59.173 37.500 0.00 0.00 0.00 1.82
831 887 1.068121 CAGAAAGGAACTCCCACCCT 58.932 55.000 0.00 0.00 38.49 4.34
832 888 2.158066 TCAGAAAGGAACTCCCACCCTA 60.158 50.000 0.00 0.00 38.49 3.53
883 941 1.147153 GGCATTCTTCCCCTCTCCG 59.853 63.158 0.00 0.00 0.00 4.63
888 946 0.544357 TTCTTCCCCTCTCCGCTGAA 60.544 55.000 0.00 0.00 0.00 3.02
889 947 0.325671 TCTTCCCCTCTCCGCTGAAT 60.326 55.000 0.00 0.00 0.00 2.57
890 948 0.105778 CTTCCCCTCTCCGCTGAATC 59.894 60.000 0.00 0.00 0.00 2.52
931 989 2.413310 GAGACCTTCCTCTCGAGTCT 57.587 55.000 13.13 6.63 40.40 3.24
932 990 2.285977 GAGACCTTCCTCTCGAGTCTC 58.714 57.143 13.13 12.15 44.62 3.36
933 991 1.011333 GACCTTCCTCTCGAGTCTCG 58.989 60.000 16.33 16.33 42.10 4.04
942 1000 2.453843 TCGAGTCTCGAGACGAACC 58.546 57.895 33.59 23.46 44.82 3.62
943 1001 1.018226 TCGAGTCTCGAGACGAACCC 61.018 60.000 33.59 21.44 44.82 4.11
944 1002 3.372905 TCGAGTCTCGAGACGAACCCT 62.373 57.143 33.59 19.32 44.82 4.34
945 1003 4.041840 TCGAGTCTCGAGACGAACCCTA 62.042 54.545 33.59 16.78 44.82 3.53
946 1004 5.826014 TCGAGTCTCGAGACGAACCCTAG 62.826 56.522 33.59 18.69 44.82 3.02
947 1005 2.021355 GTCTCGAGACGAACCCTAGA 57.979 55.000 28.46 0.00 34.74 2.43
948 1006 2.563702 GTCTCGAGACGAACCCTAGAT 58.436 52.381 28.46 0.00 34.74 1.98
949 1007 2.545106 GTCTCGAGACGAACCCTAGATC 59.455 54.545 28.46 2.45 34.74 2.75
1056 1114 3.535962 GAGCTCTCCCGCCCTCAG 61.536 72.222 6.43 0.00 0.00 3.35
1347 1405 1.497161 CCCCCTTCGTTGGAGATAGT 58.503 55.000 0.00 0.00 0.00 2.12
1992 2051 5.111989 TCTGCTTTCACTATCACAGTATGC 58.888 41.667 0.00 0.00 42.53 3.14
2048 2107 5.539574 TGAAATGTTTCACCATGGAAGACAT 59.460 36.000 21.47 18.36 41.88 3.06
2504 2569 5.883503 TCAACGAAGTAAGGTGTTTTGTT 57.116 34.783 0.00 0.00 45.00 2.83
2594 2659 6.416750 GTGAACTGTGGTTTACTATGCAAAAC 59.583 38.462 3.58 3.58 38.42 2.43
2828 2893 4.576463 CGGCTAATAAAAGGAAGTCATGCT 59.424 41.667 0.00 0.00 0.00 3.79
2835 2900 5.596836 AAAAGGAAGTCATGCTGTTGAAA 57.403 34.783 0.00 0.00 0.00 2.69
2842 2907 9.193806 AGGAAGTCATGCTGTTGAAATATATTT 57.806 29.630 10.51 10.51 0.00 1.40
2887 2952 7.768807 AAAAATTACTGTAAGGGCATGTACA 57.231 32.000 0.00 0.00 39.30 2.90
2888 2953 7.768807 AAAATTACTGTAAGGGCATGTACAA 57.231 32.000 0.00 0.00 39.30 2.41
2889 2954 7.954666 AAATTACTGTAAGGGCATGTACAAT 57.045 32.000 0.00 0.00 39.30 2.71
2890 2955 6.942532 ATTACTGTAAGGGCATGTACAATG 57.057 37.500 0.00 0.12 39.30 2.82
2891 2956 3.620488 ACTGTAAGGGCATGTACAATGG 58.380 45.455 0.00 0.00 39.30 3.16
2892 2957 3.010138 ACTGTAAGGGCATGTACAATGGT 59.990 43.478 0.00 0.00 39.30 3.55
2893 2958 3.351740 TGTAAGGGCATGTACAATGGTG 58.648 45.455 0.00 0.00 0.00 4.17
2894 2959 1.185315 AAGGGCATGTACAATGGTGC 58.815 50.000 10.12 10.12 36.88 5.01
2895 2960 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
2896 2961 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
2897 2962 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
2898 2963 2.958355 GGGCATGTACAATGGTGCTATT 59.042 45.455 16.47 0.00 37.70 1.73
2899 2964 3.384467 GGGCATGTACAATGGTGCTATTT 59.616 43.478 16.47 0.00 37.70 1.40
2900 2965 4.141959 GGGCATGTACAATGGTGCTATTTT 60.142 41.667 16.47 0.00 37.70 1.82
2901 2966 5.068460 GGGCATGTACAATGGTGCTATTTTA 59.932 40.000 16.47 0.00 37.70 1.52
2902 2967 6.208644 GGCATGTACAATGGTGCTATTTTAG 58.791 40.000 16.47 0.00 37.70 1.85
2903 2968 6.208644 GCATGTACAATGGTGCTATTTTAGG 58.791 40.000 11.12 0.00 34.85 2.69
2904 2969 6.039270 GCATGTACAATGGTGCTATTTTAGGA 59.961 38.462 11.12 0.00 34.85 2.94
2905 2970 7.642669 CATGTACAATGGTGCTATTTTAGGAG 58.357 38.462 0.00 0.00 0.00 3.69
2906 2971 6.717289 TGTACAATGGTGCTATTTTAGGAGT 58.283 36.000 0.00 0.00 0.00 3.85
2907 2972 6.597672 TGTACAATGGTGCTATTTTAGGAGTG 59.402 38.462 0.00 0.00 0.00 3.51
2908 2973 5.815581 ACAATGGTGCTATTTTAGGAGTGA 58.184 37.500 0.00 0.00 0.00 3.41
2909 2974 5.648092 ACAATGGTGCTATTTTAGGAGTGAC 59.352 40.000 0.00 0.00 0.00 3.67
2910 2975 4.901197 TGGTGCTATTTTAGGAGTGACA 57.099 40.909 0.00 0.00 0.00 3.58
2911 2976 4.575885 TGGTGCTATTTTAGGAGTGACAC 58.424 43.478 0.00 0.00 0.00 3.67
2912 2977 3.617263 GGTGCTATTTTAGGAGTGACACG 59.383 47.826 0.00 0.00 0.00 4.49
2913 2978 4.243270 GTGCTATTTTAGGAGTGACACGT 58.757 43.478 0.00 0.00 0.00 4.49
2914 2979 5.404946 GTGCTATTTTAGGAGTGACACGTA 58.595 41.667 0.00 0.00 0.00 3.57
2915 2980 5.515626 GTGCTATTTTAGGAGTGACACGTAG 59.484 44.000 0.00 0.00 0.00 3.51
2916 2981 5.041940 GCTATTTTAGGAGTGACACGTAGG 58.958 45.833 0.00 0.00 0.00 3.18
2917 2982 5.163581 GCTATTTTAGGAGTGACACGTAGGA 60.164 44.000 0.00 0.00 0.00 2.94
2918 2983 5.934402 ATTTTAGGAGTGACACGTAGGAT 57.066 39.130 0.00 0.00 0.00 3.24
2919 2984 7.255381 GCTATTTTAGGAGTGACACGTAGGATA 60.255 40.741 0.00 0.00 0.00 2.59
2920 2985 6.839124 TTTTAGGAGTGACACGTAGGATAA 57.161 37.500 0.00 0.00 0.00 1.75
2921 2986 6.839124 TTTAGGAGTGACACGTAGGATAAA 57.161 37.500 0.00 0.00 0.00 1.40
2922 2987 7.414222 TTTAGGAGTGACACGTAGGATAAAT 57.586 36.000 0.00 0.00 0.00 1.40
2923 2988 5.263968 AGGAGTGACACGTAGGATAAATG 57.736 43.478 0.00 0.00 0.00 2.32
2924 2989 4.954202 AGGAGTGACACGTAGGATAAATGA 59.046 41.667 0.00 0.00 0.00 2.57
2925 2990 5.598830 AGGAGTGACACGTAGGATAAATGAT 59.401 40.000 0.00 0.00 0.00 2.45
2926 2991 5.692204 GGAGTGACACGTAGGATAAATGATG 59.308 44.000 0.00 0.00 0.00 3.07
2927 2992 6.461092 GGAGTGACACGTAGGATAAATGATGA 60.461 42.308 0.00 0.00 0.00 2.92
2928 2993 6.507900 AGTGACACGTAGGATAAATGATGAG 58.492 40.000 0.00 0.00 0.00 2.90
2929 2994 5.692204 GTGACACGTAGGATAAATGATGAGG 59.308 44.000 0.00 0.00 0.00 3.86
2930 2995 5.362717 TGACACGTAGGATAAATGATGAGGT 59.637 40.000 0.00 0.00 0.00 3.85
2931 2996 5.601662 ACACGTAGGATAAATGATGAGGTG 58.398 41.667 0.00 0.00 0.00 4.00
2932 2997 4.991056 CACGTAGGATAAATGATGAGGTGG 59.009 45.833 0.00 0.00 0.00 4.61
2933 2998 4.899457 ACGTAGGATAAATGATGAGGTGGA 59.101 41.667 0.00 0.00 0.00 4.02
2934 2999 5.011125 ACGTAGGATAAATGATGAGGTGGAG 59.989 44.000 0.00 0.00 0.00 3.86
2935 3000 4.989875 AGGATAAATGATGAGGTGGAGG 57.010 45.455 0.00 0.00 0.00 4.30
2936 3001 4.570926 AGGATAAATGATGAGGTGGAGGA 58.429 43.478 0.00 0.00 0.00 3.71
2937 3002 4.596643 AGGATAAATGATGAGGTGGAGGAG 59.403 45.833 0.00 0.00 0.00 3.69
2938 3003 4.594920 GGATAAATGATGAGGTGGAGGAGA 59.405 45.833 0.00 0.00 0.00 3.71
2939 3004 5.279910 GGATAAATGATGAGGTGGAGGAGAG 60.280 48.000 0.00 0.00 0.00 3.20
2940 3005 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
2941 3006 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
2942 3007 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
2943 3008 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
2944 3009 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
2945 3010 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
2946 3011 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
2947 3012 1.099689 GGTGGAGGAGAGAGAACTCG 58.900 60.000 0.00 0.00 46.64 4.18
2948 3013 1.614850 GGTGGAGGAGAGAGAACTCGT 60.615 57.143 0.00 0.00 46.64 4.18
2949 3014 2.355920 GGTGGAGGAGAGAGAACTCGTA 60.356 54.545 0.00 0.00 46.64 3.43
2950 3015 3.345414 GTGGAGGAGAGAGAACTCGTAA 58.655 50.000 0.00 0.00 46.64 3.18
2951 3016 3.375922 GTGGAGGAGAGAGAACTCGTAAG 59.624 52.174 0.00 0.00 46.64 2.34
2952 3017 3.263681 TGGAGGAGAGAGAACTCGTAAGA 59.736 47.826 0.00 0.00 46.64 2.10
2968 3033 5.270812 CGTAAGAAAAGGCTTGTCTTCTC 57.729 43.478 30.86 23.31 43.02 2.87
2969 3034 4.991687 CGTAAGAAAAGGCTTGTCTTCTCT 59.008 41.667 30.86 14.05 43.02 3.10
2970 3035 5.467063 CGTAAGAAAAGGCTTGTCTTCTCTT 59.533 40.000 30.86 18.21 37.66 2.85
2971 3036 6.645415 CGTAAGAAAAGGCTTGTCTTCTCTTA 59.355 38.462 30.86 14.34 36.06 2.10
2972 3037 7.332182 CGTAAGAAAAGGCTTGTCTTCTCTTAT 59.668 37.037 30.86 12.37 38.09 1.73
2973 3038 9.004717 GTAAGAAAAGGCTTGTCTTCTCTTATT 57.995 33.333 30.86 11.70 38.09 1.40
2974 3039 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
2975 3040 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
2976 3041 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
2977 3042 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
2978 3043 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
3012 3077 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
3013 3078 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
3014 3079 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
3015 3080 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
3016 3081 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
3017 3082 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
3018 3083 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
3019 3084 5.419542 TCTTAGCACAATATGTCTCACCAC 58.580 41.667 0.00 0.00 0.00 4.16
3020 3085 2.621338 AGCACAATATGTCTCACCACG 58.379 47.619 0.00 0.00 0.00 4.94
3021 3086 2.028112 AGCACAATATGTCTCACCACGT 60.028 45.455 0.00 0.00 0.00 4.49
3022 3087 2.742053 GCACAATATGTCTCACCACGTT 59.258 45.455 0.00 0.00 0.00 3.99
3023 3088 3.188460 GCACAATATGTCTCACCACGTTT 59.812 43.478 0.00 0.00 0.00 3.60
3024 3089 4.320202 GCACAATATGTCTCACCACGTTTT 60.320 41.667 0.00 0.00 0.00 2.43
3025 3090 5.757886 CACAATATGTCTCACCACGTTTTT 58.242 37.500 0.00 0.00 0.00 1.94
3026 3091 6.566942 GCACAATATGTCTCACCACGTTTTTA 60.567 38.462 0.00 0.00 0.00 1.52
3027 3092 7.015289 CACAATATGTCTCACCACGTTTTTAG 58.985 38.462 0.00 0.00 0.00 1.85
3028 3093 6.148811 ACAATATGTCTCACCACGTTTTTAGG 59.851 38.462 0.00 0.00 0.00 2.69
3029 3094 3.823281 TGTCTCACCACGTTTTTAGGA 57.177 42.857 0.00 0.00 0.00 2.94
3030 3095 4.139859 TGTCTCACCACGTTTTTAGGAA 57.860 40.909 0.00 0.00 0.00 3.36
3031 3096 4.710324 TGTCTCACCACGTTTTTAGGAAT 58.290 39.130 0.00 0.00 0.00 3.01
3032 3097 5.856156 TGTCTCACCACGTTTTTAGGAATA 58.144 37.500 0.00 0.00 0.00 1.75
3033 3098 5.929992 TGTCTCACCACGTTTTTAGGAATAG 59.070 40.000 0.00 0.00 0.00 1.73
3034 3099 4.933400 TCTCACCACGTTTTTAGGAATAGC 59.067 41.667 0.00 0.00 0.00 2.97
3035 3100 4.901868 TCACCACGTTTTTAGGAATAGCT 58.098 39.130 0.00 0.00 0.00 3.32
3036 3101 6.040209 TCACCACGTTTTTAGGAATAGCTA 57.960 37.500 0.00 0.00 0.00 3.32
3037 3102 6.103997 TCACCACGTTTTTAGGAATAGCTAG 58.896 40.000 0.00 0.00 0.00 3.42
3038 3103 5.873164 CACCACGTTTTTAGGAATAGCTAGT 59.127 40.000 0.00 0.00 0.00 2.57
3039 3104 6.370718 CACCACGTTTTTAGGAATAGCTAGTT 59.629 38.462 0.00 0.00 0.00 2.24
3040 3105 7.546667 CACCACGTTTTTAGGAATAGCTAGTTA 59.453 37.037 0.00 0.00 0.00 2.24
3041 3106 8.262933 ACCACGTTTTTAGGAATAGCTAGTTAT 58.737 33.333 0.00 0.00 0.00 1.89
3042 3107 9.106070 CCACGTTTTTAGGAATAGCTAGTTATT 57.894 33.333 11.22 11.22 0.00 1.40
3043 3108 9.916397 CACGTTTTTAGGAATAGCTAGTTATTG 57.084 33.333 15.66 2.20 0.00 1.90
3044 3109 9.880157 ACGTTTTTAGGAATAGCTAGTTATTGA 57.120 29.630 15.66 0.00 0.00 2.57
3053 3118 9.157104 GGAATAGCTAGTTATTGAAGATAAGGC 57.843 37.037 15.66 0.00 0.00 4.35
3054 3119 9.936759 GAATAGCTAGTTATTGAAGATAAGGCT 57.063 33.333 15.66 0.00 0.00 4.58
3058 3123 9.148879 AGCTAGTTATTGAAGATAAGGCTAAGA 57.851 33.333 0.00 0.00 0.00 2.10
3059 3124 9.765795 GCTAGTTATTGAAGATAAGGCTAAGAA 57.234 33.333 0.00 0.00 0.00 2.52
3065 3130 7.865706 TTGAAGATAAGGCTAAGAAATGACC 57.134 36.000 0.00 0.00 0.00 4.02
3066 3131 7.200434 TGAAGATAAGGCTAAGAAATGACCT 57.800 36.000 0.00 0.00 0.00 3.85
3067 3132 8.319057 TGAAGATAAGGCTAAGAAATGACCTA 57.681 34.615 0.00 0.00 0.00 3.08
3068 3133 8.938883 TGAAGATAAGGCTAAGAAATGACCTAT 58.061 33.333 0.00 0.00 0.00 2.57
3069 3134 9.785982 GAAGATAAGGCTAAGAAATGACCTATT 57.214 33.333 0.00 0.00 0.00 1.73
3070 3135 9.566432 AAGATAAGGCTAAGAAATGACCTATTG 57.434 33.333 0.00 0.00 0.00 1.90
3071 3136 8.718656 AGATAAGGCTAAGAAATGACCTATTGT 58.281 33.333 0.00 0.00 0.00 2.71
3072 3137 9.998106 GATAAGGCTAAGAAATGACCTATTGTA 57.002 33.333 0.00 0.00 0.00 2.41
3074 3139 7.676683 AGGCTAAGAAATGACCTATTGTAGA 57.323 36.000 0.00 0.00 0.00 2.59
3075 3140 7.501844 AGGCTAAGAAATGACCTATTGTAGAC 58.498 38.462 0.00 0.00 0.00 2.59
3076 3141 7.125811 AGGCTAAGAAATGACCTATTGTAGACA 59.874 37.037 0.00 0.00 0.00 3.41
3077 3142 7.934120 GGCTAAGAAATGACCTATTGTAGACAT 59.066 37.037 0.00 0.00 0.00 3.06
3078 3143 8.983724 GCTAAGAAATGACCTATTGTAGACATC 58.016 37.037 0.00 0.00 0.00 3.06
3081 3146 9.965902 AAGAAATGACCTATTGTAGACATCTTT 57.034 29.630 0.00 0.00 0.00 2.52
3082 3147 9.965902 AGAAATGACCTATTGTAGACATCTTTT 57.034 29.630 0.00 0.00 0.00 2.27
3108 3173 9.844790 TTTTGACATCTCTAAATTACATGCAAG 57.155 29.630 0.00 0.00 0.00 4.01
3109 3174 8.791327 TTGACATCTCTAAATTACATGCAAGA 57.209 30.769 0.00 0.00 0.00 3.02
3110 3175 8.201554 TGACATCTCTAAATTACATGCAAGAC 57.798 34.615 0.00 0.00 0.00 3.01
3111 3176 8.043113 TGACATCTCTAAATTACATGCAAGACT 58.957 33.333 0.00 0.00 0.00 3.24
3112 3177 8.798859 ACATCTCTAAATTACATGCAAGACTT 57.201 30.769 0.00 0.00 0.00 3.01
3113 3178 9.890629 ACATCTCTAAATTACATGCAAGACTTA 57.109 29.630 0.00 0.00 0.00 2.24
3126 3191 9.757227 ACATGCAAGACTTAAGATAAGACTATC 57.243 33.333 10.09 0.00 35.10 2.08
3127 3192 9.979578 CATGCAAGACTTAAGATAAGACTATCT 57.020 33.333 10.09 0.00 45.21 1.98
3145 3210 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
3146 3211 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
3147 3212 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
3148 3213 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
3149 3214 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
3150 3215 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
3465 3531 5.474876 AGGTTGGAAGAAAATGAACTAGCAG 59.525 40.000 0.00 0.00 0.00 4.24
3526 3592 1.005924 CCAAATGAGTACCAGGGGCTT 59.994 52.381 0.00 0.00 0.00 4.35
3649 3715 5.050769 GCCTATCAACATGTTCGTATCACTG 60.051 44.000 8.48 0.00 0.00 3.66
3660 3726 2.037902 TCGTATCACTGGCTCCACAAAA 59.962 45.455 0.00 0.00 0.00 2.44
3697 3767 7.807433 TGAATCAACTTTTATTGTGGTCAATCG 59.193 33.333 0.00 0.00 42.45 3.34
3715 3785 6.373216 GTCAATCGGAGCTGATAGATAGTACT 59.627 42.308 0.00 0.00 0.00 2.73
3716 3786 6.596106 TCAATCGGAGCTGATAGATAGTACTC 59.404 42.308 0.00 0.00 0.00 2.59
3717 3787 4.834534 TCGGAGCTGATAGATAGTACTCC 58.165 47.826 0.00 0.00 39.06 3.85
3718 3788 3.942748 CGGAGCTGATAGATAGTACTCCC 59.057 52.174 0.00 0.00 39.23 4.30
3719 3789 4.323945 CGGAGCTGATAGATAGTACTCCCT 60.324 50.000 0.00 0.00 39.23 4.20
3720 3790 5.190677 GGAGCTGATAGATAGTACTCCCTC 58.809 50.000 0.00 0.00 36.95 4.30
3721 3791 5.045140 GGAGCTGATAGATAGTACTCCCTCT 60.045 48.000 0.00 3.21 36.95 3.69
3722 3792 5.815581 AGCTGATAGATAGTACTCCCTCTG 58.184 45.833 0.00 0.00 0.00 3.35
3723 3793 5.312178 AGCTGATAGATAGTACTCCCTCTGT 59.688 44.000 0.00 0.00 0.00 3.41
3724 3794 5.646360 GCTGATAGATAGTACTCCCTCTGTC 59.354 48.000 0.00 8.91 0.00 3.51
3725 3795 6.521770 GCTGATAGATAGTACTCCCTCTGTCT 60.522 46.154 18.80 5.62 36.44 3.41
3726 3796 7.011499 TGATAGATAGTACTCCCTCTGTCTC 57.989 44.000 18.80 11.39 34.79 3.36
3727 3797 6.559157 TGATAGATAGTACTCCCTCTGTCTCA 59.441 42.308 18.80 12.89 34.79 3.27
3728 3798 5.922960 AGATAGTACTCCCTCTGTCTCAT 57.077 43.478 0.00 0.00 28.66 2.90
3729 3799 8.688222 ATAGATAGTACTCCCTCTGTCTCATA 57.312 38.462 0.00 0.00 34.79 2.15
3730 3800 7.395525 AGATAGTACTCCCTCTGTCTCATAA 57.604 40.000 0.00 0.00 28.66 1.90
3731 3801 7.995663 AGATAGTACTCCCTCTGTCTCATAAT 58.004 38.462 0.00 0.00 28.66 1.28
3732 3802 9.118367 AGATAGTACTCCCTCTGTCTCATAATA 57.882 37.037 0.00 0.00 28.66 0.98
3733 3803 9.914834 GATAGTACTCCCTCTGTCTCATAATAT 57.085 37.037 0.00 0.00 0.00 1.28
3736 3806 9.747898 AGTACTCCCTCTGTCTCATAATATAAG 57.252 37.037 0.00 0.00 0.00 1.73
3737 3807 9.742144 GTACTCCCTCTGTCTCATAATATAAGA 57.258 37.037 0.00 0.00 0.00 2.10
3739 3809 9.836179 ACTCCCTCTGTCTCATAATATAAGAAT 57.164 33.333 0.00 0.00 0.00 2.40
3741 3811 9.040259 TCCCTCTGTCTCATAATATAAGAATGG 57.960 37.037 0.00 0.00 0.00 3.16
3742 3812 8.820831 CCCTCTGTCTCATAATATAAGAATGGT 58.179 37.037 0.00 0.00 0.00 3.55
3760 3830 8.409358 AGAATGGTTTTCAAACTATGTTAGCT 57.591 30.769 2.38 0.00 38.87 3.32
3761 3831 8.860088 AGAATGGTTTTCAAACTATGTTAGCTT 58.140 29.630 0.00 0.00 38.87 3.74
3762 3832 8.816640 AATGGTTTTCAAACTATGTTAGCTTG 57.183 30.769 0.00 0.00 38.87 4.01
3763 3833 7.575414 TGGTTTTCAAACTATGTTAGCTTGA 57.425 32.000 0.00 0.00 38.65 3.02
3764 3834 8.001881 TGGTTTTCAAACTATGTTAGCTTGAA 57.998 30.769 8.34 8.34 44.52 2.69
3769 3839 8.555166 TTCAAACTATGTTAGCTTGAAAAACG 57.445 30.769 9.50 0.00 43.75 3.60
3770 3840 7.699566 TCAAACTATGTTAGCTTGAAAAACGT 58.300 30.769 0.00 0.00 37.79 3.99
3771 3841 8.185505 TCAAACTATGTTAGCTTGAAAAACGTT 58.814 29.630 0.00 0.00 37.79 3.99
3772 3842 8.469125 CAAACTATGTTAGCTTGAAAAACGTTC 58.531 33.333 0.00 0.00 34.61 3.95
3773 3843 7.492352 ACTATGTTAGCTTGAAAAACGTTCT 57.508 32.000 0.00 0.00 0.00 3.01
3774 3844 7.927048 ACTATGTTAGCTTGAAAAACGTTCTT 58.073 30.769 0.00 0.00 0.00 2.52
3775 3845 9.048446 ACTATGTTAGCTTGAAAAACGTTCTTA 57.952 29.630 0.00 0.00 0.00 2.10
3784 3854 9.233232 GCTTGAAAAACGTTCTTATATTATGGG 57.767 33.333 0.00 0.00 0.00 4.00
3787 3857 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3788 3858 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3789 3859 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3790 3860 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3791 3861 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3792 3862 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3793 3863 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3794 3864 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4059 4131 3.715628 AACTTTGATTCGTTTGCTGCT 57.284 38.095 0.00 0.00 0.00 4.24
4182 4254 5.760743 GCAGATAGAAGAAACCAGGAATACC 59.239 44.000 0.00 0.00 0.00 2.73
4247 4319 4.245660 GCATTGGAAAAGCTTACCTTTCC 58.754 43.478 17.32 17.32 42.82 3.13
4280 4352 9.139174 CTTTGGACCAATTGATGTATTTTGTAC 57.861 33.333 7.99 0.00 0.00 2.90
4303 4375 6.784031 ACAACAGGATTTCCTCTTCATAACT 58.216 36.000 0.00 0.00 46.65 2.24
4304 4376 7.918076 ACAACAGGATTTCCTCTTCATAACTA 58.082 34.615 0.00 0.00 46.65 2.24
4305 4377 8.043710 ACAACAGGATTTCCTCTTCATAACTAG 58.956 37.037 0.00 0.00 46.65 2.57
4319 4391 8.746530 TCTTCATAACTAGTAGTAACCAGGTTG 58.253 37.037 15.82 0.00 0.00 3.77
4346 4418 5.978814 TCCTTAATCAACAGAGGAAGTAGC 58.021 41.667 0.00 0.00 35.45 3.58
4347 4419 5.721960 TCCTTAATCAACAGAGGAAGTAGCT 59.278 40.000 0.00 0.00 35.45 3.32
4348 4420 6.045955 CCTTAATCAACAGAGGAAGTAGCTC 58.954 44.000 0.00 0.00 0.00 4.09
4349 4421 6.351371 CCTTAATCAACAGAGGAAGTAGCTCA 60.351 42.308 0.00 0.00 0.00 4.26
4350 4422 3.944055 TCAACAGAGGAAGTAGCTCAC 57.056 47.619 0.00 0.00 0.00 3.51
4351 4423 3.501349 TCAACAGAGGAAGTAGCTCACT 58.499 45.455 0.00 0.00 40.05 3.41
4352 4424 4.663334 TCAACAGAGGAAGTAGCTCACTA 58.337 43.478 0.00 0.00 36.04 2.74
4353 4425 4.702612 TCAACAGAGGAAGTAGCTCACTAG 59.297 45.833 0.00 0.00 36.04 2.57
4354 4426 3.626930 ACAGAGGAAGTAGCTCACTAGG 58.373 50.000 0.00 0.00 36.04 3.02
4355 4427 3.267291 ACAGAGGAAGTAGCTCACTAGGA 59.733 47.826 0.00 0.00 36.04 2.94
4356 4428 3.882888 CAGAGGAAGTAGCTCACTAGGAG 59.117 52.174 0.00 0.00 46.93 3.69
4367 4439 4.255833 CTCACTAGGAGCATCTTCCATC 57.744 50.000 0.00 0.00 39.84 3.51
4368 4440 2.968574 TCACTAGGAGCATCTTCCATCC 59.031 50.000 0.00 0.00 39.84 3.51
4369 4441 2.702478 CACTAGGAGCATCTTCCATCCA 59.298 50.000 0.00 0.00 39.84 3.41
4370 4442 2.703007 ACTAGGAGCATCTTCCATCCAC 59.297 50.000 0.00 0.00 39.84 4.02
4371 4443 1.890552 AGGAGCATCTTCCATCCACT 58.109 50.000 0.00 0.00 39.84 4.00
4372 4444 1.767681 AGGAGCATCTTCCATCCACTC 59.232 52.381 0.00 0.00 39.84 3.51
4373 4445 1.539929 GGAGCATCTTCCATCCACTCG 60.540 57.143 0.00 0.00 37.20 4.18
4408 4492 3.425193 GTGGCTAATTCGTTTGCAACAAG 59.575 43.478 0.00 0.00 30.35 3.16
4470 4554 1.755380 ACTCAACCGCCACTCTATACC 59.245 52.381 0.00 0.00 0.00 2.73
4634 4727 1.393597 CTTTCGCGTGTAGTCGTCGG 61.394 60.000 5.77 0.00 33.79 4.79
4673 4766 1.076332 CTTTCGCCTTCCGTAACTGG 58.924 55.000 0.00 0.00 38.35 4.00
4679 4772 1.810030 CTTCCGTAACTGGCGAGGC 60.810 63.158 0.00 0.00 0.00 4.70
4680 4773 2.227089 CTTCCGTAACTGGCGAGGCT 62.227 60.000 0.00 0.00 0.00 4.58
4683 4778 1.215647 CGTAACTGGCGAGGCTCTT 59.784 57.895 13.50 1.95 0.00 2.85
4686 4781 2.152016 GTAACTGGCGAGGCTCTTTTT 58.848 47.619 13.50 1.39 0.00 1.94
4717 4812 2.253610 TCAATGGACCACGGTTACTCT 58.746 47.619 0.00 0.00 0.00 3.24
4718 4813 2.028476 TCAATGGACCACGGTTACTCTG 60.028 50.000 0.00 0.00 0.00 3.35
4719 4814 0.902531 ATGGACCACGGTTACTCTGG 59.097 55.000 0.00 0.00 0.00 3.86
4720 4815 0.178955 TGGACCACGGTTACTCTGGA 60.179 55.000 5.98 0.00 0.00 3.86
4721 4816 1.192428 GGACCACGGTTACTCTGGAT 58.808 55.000 5.98 0.00 0.00 3.41
4722 4817 1.553704 GGACCACGGTTACTCTGGATT 59.446 52.381 5.98 0.00 0.00 3.01
4723 4818 2.418334 GGACCACGGTTACTCTGGATTC 60.418 54.545 5.98 0.00 0.00 2.52
4996 5091 1.537397 ACTGGAGCTTCTGGAGGCA 60.537 57.895 3.68 0.00 35.69 4.75
4999 5094 0.911045 TGGAGCTTCTGGAGGCATGA 60.911 55.000 0.00 0.00 35.69 3.07
5139 5234 4.274214 CACATCCATCTCAACATACGCATT 59.726 41.667 0.00 0.00 0.00 3.56
5302 5397 0.611618 TTGGCGCCACTTCATCCATT 60.612 50.000 32.95 0.00 0.00 3.16
5663 5758 0.036388 TAAGGGCTCAAAGCTGACCG 60.036 55.000 0.00 0.00 41.99 4.79
5699 5794 2.364324 TCTTAATCGGGAAGTCATCGGG 59.636 50.000 0.00 0.00 0.00 5.14
5787 5882 1.187087 TTGCCGGGACTTTGTGTTTT 58.813 45.000 2.18 0.00 0.00 2.43
5837 5932 6.295349 CGTGGTATCTTATCATAGGCCTTCTT 60.295 42.308 12.58 0.00 0.00 2.52
5889 5984 6.269769 CCTTCTTTTGCTCCCTATATCTCTCT 59.730 42.308 0.00 0.00 0.00 3.10
5958 6053 6.705381 CAGGCATGAAACCAAACTGATTTTTA 59.295 34.615 0.00 0.00 0.00 1.52
5972 6067 5.090652 TGATTTTTAGTCACGCTTGTCAC 57.909 39.130 0.00 0.00 0.00 3.67
6270 6366 1.930251 CCTCCTTCACCTCAGACTCA 58.070 55.000 0.00 0.00 0.00 3.41
6320 6416 3.099905 TCTCATCAAAGGAGTCGTCCAT 58.900 45.455 0.00 0.00 46.80 3.41
6350 6446 4.202305 GGTAGAACTCTCATTCTCCCCATG 60.202 50.000 0.00 0.00 39.65 3.66
6388 6484 1.344763 ACTCCCGCCATCTATGCTTAC 59.655 52.381 0.00 0.00 0.00 2.34
6606 6702 5.440234 TCGCCATCTTGTACTTCTCTATC 57.560 43.478 0.00 0.00 0.00 2.08
6639 6735 3.848377 TCCTATCCAGGTATAGGCGTCTA 59.152 47.826 15.42 0.00 45.62 2.59
6740 6836 3.257627 TGGACACTCCAAACTCCCT 57.742 52.632 0.00 0.00 45.00 4.20
6760 6856 0.108329 CGAGGCCACCTTACGAATGT 60.108 55.000 5.01 0.00 31.76 2.71
6806 6902 2.378634 CCGCATCCCCTCCTTCCTT 61.379 63.158 0.00 0.00 0.00 3.36
6927 7023 0.734942 GGACACGAATCCGAAAGCGA 60.735 55.000 0.00 0.00 40.82 4.93
6934 7030 2.156891 CGAATCCGAAAGCGAAAGTCAA 59.843 45.455 0.00 0.00 40.82 3.18
7017 7113 2.480416 CGCACGCCTATCTTCTCTTCTT 60.480 50.000 0.00 0.00 0.00 2.52
7048 7144 9.950496 GGATAATAAAATCAATCTGGCTAGAGA 57.050 33.333 5.82 0.00 36.14 3.10
7530 7626 0.032515 TATCCTCCACCTCCTTCGCA 60.033 55.000 0.00 0.00 0.00 5.10
7635 7732 1.268899 CGTGTCAGAGACCCTACGTTT 59.731 52.381 0.00 0.00 29.25 3.60
7715 7812 3.596214 GAGTCAAATGCGAAGACCCTTA 58.404 45.455 0.00 0.00 32.82 2.69
7912 8012 1.949465 GGTTACGCCCCATTACTCTG 58.051 55.000 0.00 0.00 0.00 3.35
7946 8053 7.524717 ACAATAAAAATCCACTAACAGCTGT 57.475 32.000 15.25 15.25 0.00 4.40
7962 8069 1.698506 CTGTATCCCGCTCCTCTCTT 58.301 55.000 0.00 0.00 0.00 2.85
7968 8075 0.758685 CCCGCTCCTCTCTTGATCCT 60.759 60.000 0.00 0.00 0.00 3.24
7970 8077 1.068434 CCGCTCCTCTCTTGATCCTTC 59.932 57.143 0.00 0.00 0.00 3.46
8006 8113 2.873472 CACGTCCTTATCTACTCTCGCT 59.127 50.000 0.00 0.00 0.00 4.93
8109 8236 2.558554 TAGGTCTTCGCGCTTGGCTC 62.559 60.000 5.56 0.00 40.44 4.70
8114 8241 4.656117 TCGCGCTTGGCTCGACAA 62.656 61.111 5.56 0.00 40.80 3.18
8126 8263 1.895020 CTCGACAACCCCCGGATTGA 61.895 60.000 16.89 0.00 0.00 2.57
8172 8313 3.747708 GCCTACCCACATGATTCCCTAAC 60.748 52.174 0.00 0.00 0.00 2.34
8176 8317 2.170607 CCCACATGATTCCCTAACGAGT 59.829 50.000 0.00 0.00 0.00 4.18
8177 8318 3.370527 CCCACATGATTCCCTAACGAGTT 60.371 47.826 0.00 0.00 0.00 3.01
8178 8319 3.871594 CCACATGATTCCCTAACGAGTTC 59.128 47.826 0.00 0.00 0.00 3.01
8234 8397 1.210234 TGACGGCTGATGGATGAACAT 59.790 47.619 0.00 0.00 0.00 2.71
8243 8414 4.788679 TGATGGATGAACATGATTGCTCT 58.211 39.130 0.00 0.00 0.00 4.09
8246 8417 3.285484 GGATGAACATGATTGCTCTGGT 58.715 45.455 0.00 0.00 0.00 4.00
8261 8432 1.968493 TCTGGTCGTGGCTTTAGTCTT 59.032 47.619 0.00 0.00 0.00 3.01
8267 8438 1.508632 GTGGCTTTAGTCTTGCGTGA 58.491 50.000 0.00 0.00 0.00 4.35
8271 8442 3.194755 TGGCTTTAGTCTTGCGTGAGATA 59.805 43.478 0.00 0.00 0.00 1.98
8291 8468 2.421739 GCTGTATGGGCGGACGAT 59.578 61.111 0.00 0.00 0.00 3.73
8352 8552 2.427453 ACCATGTCTTACTCTACTGCCG 59.573 50.000 0.00 0.00 0.00 5.69
8353 8553 2.688446 CCATGTCTTACTCTACTGCCGA 59.312 50.000 0.00 0.00 0.00 5.54
8354 8554 3.243234 CCATGTCTTACTCTACTGCCGAG 60.243 52.174 0.00 0.00 34.70 4.63
8355 8555 2.366533 TGTCTTACTCTACTGCCGAGG 58.633 52.381 0.00 0.00 32.83 4.63
8356 8556 1.065851 GTCTTACTCTACTGCCGAGGC 59.934 57.143 7.26 7.26 42.35 4.70
8357 8557 1.064611 TCTTACTCTACTGCCGAGGCT 60.065 52.381 15.75 0.00 42.51 4.58
8358 8558 1.066303 CTTACTCTACTGCCGAGGCTG 59.934 57.143 17.63 17.63 44.06 4.85
8359 8559 1.384989 TACTCTACTGCCGAGGCTGC 61.385 60.000 18.87 0.00 42.60 5.25
8360 8560 2.679996 TCTACTGCCGAGGCTGCA 60.680 61.111 18.87 7.26 42.60 4.41
8361 8561 2.230994 CTCTACTGCCGAGGCTGCAA 62.231 60.000 18.87 8.31 42.60 4.08
8381 8583 4.742274 TGGCACACACACGAGTAC 57.258 55.556 0.00 0.00 0.00 2.73
8446 8648 2.604914 GCCTGTTGATGATAGACACACG 59.395 50.000 0.00 0.00 0.00 4.49
8462 8664 2.416547 CACACGTTCATCCATCTTCACC 59.583 50.000 0.00 0.00 0.00 4.02
8476 8678 3.077556 CACCGGCCCTAGCAGTCT 61.078 66.667 0.00 0.00 42.56 3.24
8486 8688 1.343075 CCTAGCAGTCTTCCTACCCCA 60.343 57.143 0.00 0.00 0.00 4.96
8507 8709 4.457496 CCCGGCGATCACAGCTGT 62.457 66.667 15.25 15.25 39.23 4.40
8513 8715 2.377004 CGATCACAGCTGTCGCATT 58.623 52.632 18.64 0.00 39.10 3.56
8574 8780 2.787473 ATCCACAAGAGCCGATTCAA 57.213 45.000 0.00 0.00 0.00 2.69
8772 8979 7.285172 GGTACCCTTTTGTTTTACCTCAAACTA 59.715 37.037 0.00 0.00 37.51 2.24
8787 8994 6.321181 ACCTCAAACTAAATCTTTGTGCAGAA 59.679 34.615 0.00 0.00 31.63 3.02
8862 9074 9.325198 AGATAATAGAGACTAGATACTGCATCG 57.675 37.037 0.00 0.00 38.81 3.84
8866 9078 4.041075 AGAGACTAGATACTGCATCGGAGA 59.959 45.833 0.00 0.00 45.75 3.71
8965 9193 4.804139 CACAACCTCTACACCGAATGTATC 59.196 45.833 0.67 0.00 43.01 2.24
8995 9223 7.442666 TGGTCAACAAATTTTGGGTATAAAAGC 59.557 33.333 13.42 1.52 33.49 3.51
9105 9640 5.496556 TGGATATTGTGTTCTAACCCACAG 58.503 41.667 0.00 0.00 42.11 3.66
9119 9654 1.679139 CCACAGAAGGCAGTTCACAA 58.321 50.000 1.32 0.00 37.67 3.33
9221 9756 4.201657 TCTGACATAATCCCATGCAACTG 58.798 43.478 0.00 0.00 0.00 3.16
9225 9760 3.696051 ACATAATCCCATGCAACTGTGAC 59.304 43.478 0.00 0.00 0.00 3.67
9228 9763 3.650281 ATCCCATGCAACTGTGACATA 57.350 42.857 0.00 0.00 0.00 2.29
9455 9996 8.985315 AGGCTTATTGATCATTATGTCTTTCA 57.015 30.769 10.29 0.00 0.00 2.69
9487 10028 7.572523 TGGTAGGATAGAAATTGAAGCATTG 57.427 36.000 0.00 0.00 0.00 2.82
9620 10170 3.285290 TTCCTCAAACCCCTCTTCCTA 57.715 47.619 0.00 0.00 0.00 2.94
9646 10203 9.570468 AAGATTGCTCATTATCATATTGTGTCT 57.430 29.630 0.00 0.00 0.00 3.41
9647 10204 9.570468 AGATTGCTCATTATCATATTGTGTCTT 57.430 29.630 0.00 0.00 0.00 3.01
9648 10205 9.608617 GATTGCTCATTATCATATTGTGTCTTG 57.391 33.333 0.00 0.00 0.00 3.02
9663 10220 5.784177 TGTGTCTTGAGGTCTCATAAACTC 58.216 41.667 1.16 3.31 39.64 3.01
9677 10234 8.279103 GTCTCATAAACTCTATTTGTAGCATGC 58.721 37.037 10.51 10.51 0.00 4.06
9678 10235 7.442364 TCTCATAAACTCTATTTGTAGCATGCC 59.558 37.037 15.66 0.00 0.00 4.40
9729 10286 7.174426 ACACTCTAAACCCTAATTGTGCTTTAC 59.826 37.037 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 201 7.117667 ACATGGTTGAACAGTTTTTGAGTTTTC 59.882 33.333 0.00 0.00 0.00 2.29
189 214 7.920151 TGAACATTTCTTTACATGGTTGAACAG 59.080 33.333 0.00 0.00 0.00 3.16
206 232 9.962759 GACATTATTTGCATTCTTGAACATTTC 57.037 29.630 0.00 0.00 0.00 2.17
289 316 6.417930 TGAACATATTCTTAGTTCGATGAGCG 59.582 38.462 0.00 0.00 43.36 5.03
346 373 8.040132 TGGACACTTTTTGAGTTTGATGAAAAT 58.960 29.630 0.00 0.00 36.10 1.82
523 555 9.916397 AGAACGAACATATTTCTAATTTTAGCG 57.084 29.630 0.00 0.00 0.00 4.26
616 648 4.819105 ATCGGGATCACAACAAGTTCTA 57.181 40.909 0.00 0.00 0.00 2.10
724 779 3.090532 ACAATCCTCCGGGAGCCC 61.091 66.667 18.91 0.00 45.86 5.19
734 789 0.976641 TCGGCAACAGAGACAATCCT 59.023 50.000 0.00 0.00 0.00 3.24
883 941 8.752766 TCTTTTCTTTTTGATGATGATTCAGC 57.247 30.769 0.00 0.00 38.77 4.26
888 946 9.403110 CTCGTTTCTTTTCTTTTTGATGATGAT 57.597 29.630 0.00 0.00 0.00 2.45
889 947 8.620416 TCTCGTTTCTTTTCTTTTTGATGATGA 58.380 29.630 0.00 0.00 0.00 2.92
890 948 8.685536 GTCTCGTTTCTTTTCTTTTTGATGATG 58.314 33.333 0.00 0.00 0.00 3.07
929 987 2.485124 GGATCTAGGGTTCGTCTCGAGA 60.485 54.545 12.08 12.08 37.14 4.04
930 988 1.874872 GGATCTAGGGTTCGTCTCGAG 59.125 57.143 5.93 5.93 37.14 4.04
931 989 1.809271 CGGATCTAGGGTTCGTCTCGA 60.809 57.143 0.00 0.00 0.00 4.04
932 990 0.587285 CGGATCTAGGGTTCGTCTCG 59.413 60.000 0.00 0.00 0.00 4.04
933 991 1.964552 TCGGATCTAGGGTTCGTCTC 58.035 55.000 0.00 0.00 0.00 3.36
934 992 2.022934 GTTCGGATCTAGGGTTCGTCT 58.977 52.381 0.00 0.00 0.00 4.18
935 993 1.066757 GGTTCGGATCTAGGGTTCGTC 59.933 57.143 0.00 0.00 0.00 4.20
936 994 1.109609 GGTTCGGATCTAGGGTTCGT 58.890 55.000 0.00 0.00 0.00 3.85
937 995 0.388294 GGGTTCGGATCTAGGGTTCG 59.612 60.000 0.00 0.00 0.00 3.95
938 996 1.790818 AGGGTTCGGATCTAGGGTTC 58.209 55.000 0.00 0.00 0.00 3.62
939 997 2.517127 TCTAGGGTTCGGATCTAGGGTT 59.483 50.000 0.00 0.00 33.31 4.11
940 998 2.141911 TCTAGGGTTCGGATCTAGGGT 58.858 52.381 0.00 0.00 33.31 4.34
941 999 2.973983 TCTAGGGTTCGGATCTAGGG 57.026 55.000 0.00 0.00 33.31 3.53
942 1000 3.358118 GGATCTAGGGTTCGGATCTAGG 58.642 54.545 0.00 0.00 36.88 3.02
943 1001 3.011119 CGGATCTAGGGTTCGGATCTAG 58.989 54.545 0.00 0.00 36.88 2.43
944 1002 2.641321 TCGGATCTAGGGTTCGGATCTA 59.359 50.000 0.00 0.00 36.88 1.98
945 1003 1.424302 TCGGATCTAGGGTTCGGATCT 59.576 52.381 0.00 0.00 36.88 2.75
946 1004 1.906990 TCGGATCTAGGGTTCGGATC 58.093 55.000 0.00 0.00 36.20 3.36
947 1005 1.962100 GTTCGGATCTAGGGTTCGGAT 59.038 52.381 0.00 0.00 0.00 4.18
948 1006 1.064166 AGTTCGGATCTAGGGTTCGGA 60.064 52.381 0.00 0.00 0.00 4.55
949 1007 1.067212 CAGTTCGGATCTAGGGTTCGG 59.933 57.143 0.00 0.00 0.00 4.30
1056 1114 2.985512 CTAGCATCACCCAGCGAGGC 62.986 65.000 0.00 0.00 40.37 4.70
1347 1405 4.202284 GGGTAATAGTAGAATGCCGGACAA 60.202 45.833 5.05 0.00 0.00 3.18
1717 1776 0.837272 CAACCACCATAGGGGACGAT 59.163 55.000 0.00 0.00 41.15 3.73
1992 2051 5.845391 TTTCCCTTAAGTTGGTGAAAGTG 57.155 39.130 0.97 0.00 0.00 3.16
2048 2107 0.767375 AAGAGCAGCCCAGAACTTGA 59.233 50.000 0.00 0.00 0.00 3.02
2504 2569 2.561858 TGATGTGCTAATTTGCCAAGCA 59.438 40.909 9.41 2.54 43.66 3.91
2594 2659 4.800993 CGTTTAGAGAGTGTCTTGCTATGG 59.199 45.833 0.00 0.00 36.64 2.74
2835 2900 9.289782 GCCTCTCCAAAGTCATAACAAATATAT 57.710 33.333 0.00 0.00 0.00 0.86
2842 2907 4.365514 TTGCCTCTCCAAAGTCATAACA 57.634 40.909 0.00 0.00 0.00 2.41
2875 2940 1.185315 GCACCATTGTACATGCCCTT 58.815 50.000 7.77 0.00 31.71 3.95
2876 2941 0.332632 AGCACCATTGTACATGCCCT 59.667 50.000 14.08 0.00 38.92 5.19
2877 2942 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
2878 2943 4.654091 AAATAGCACCATTGTACATGCC 57.346 40.909 14.08 0.00 38.92 4.40
2879 2944 6.039270 TCCTAAAATAGCACCATTGTACATGC 59.961 38.462 10.53 10.53 38.39 4.06
2880 2945 7.283127 ACTCCTAAAATAGCACCATTGTACATG 59.717 37.037 0.00 0.00 0.00 3.21
2881 2946 7.283127 CACTCCTAAAATAGCACCATTGTACAT 59.717 37.037 0.00 0.00 0.00 2.29
2882 2947 6.597672 CACTCCTAAAATAGCACCATTGTACA 59.402 38.462 0.00 0.00 0.00 2.90
2883 2948 6.821665 TCACTCCTAAAATAGCACCATTGTAC 59.178 38.462 0.00 0.00 0.00 2.90
2884 2949 6.821665 GTCACTCCTAAAATAGCACCATTGTA 59.178 38.462 0.00 0.00 0.00 2.41
2885 2950 5.648092 GTCACTCCTAAAATAGCACCATTGT 59.352 40.000 0.00 0.00 0.00 2.71
2886 2951 5.647658 TGTCACTCCTAAAATAGCACCATTG 59.352 40.000 0.00 0.00 0.00 2.82
2887 2952 5.648092 GTGTCACTCCTAAAATAGCACCATT 59.352 40.000 0.00 0.00 0.00 3.16
2888 2953 5.186198 GTGTCACTCCTAAAATAGCACCAT 58.814 41.667 0.00 0.00 0.00 3.55
2889 2954 4.575885 GTGTCACTCCTAAAATAGCACCA 58.424 43.478 0.00 0.00 0.00 4.17
2890 2955 3.617263 CGTGTCACTCCTAAAATAGCACC 59.383 47.826 0.65 0.00 0.00 5.01
2891 2956 4.243270 ACGTGTCACTCCTAAAATAGCAC 58.757 43.478 0.65 0.00 0.00 4.40
2892 2957 4.530710 ACGTGTCACTCCTAAAATAGCA 57.469 40.909 0.65 0.00 0.00 3.49
2893 2958 5.041940 CCTACGTGTCACTCCTAAAATAGC 58.958 45.833 0.00 0.00 0.00 2.97
2894 2959 6.446781 TCCTACGTGTCACTCCTAAAATAG 57.553 41.667 0.00 0.00 0.00 1.73
2895 2960 8.523915 TTATCCTACGTGTCACTCCTAAAATA 57.476 34.615 0.00 0.00 0.00 1.40
2896 2961 5.934402 ATCCTACGTGTCACTCCTAAAAT 57.066 39.130 0.00 0.00 0.00 1.82
2897 2962 6.839124 TTATCCTACGTGTCACTCCTAAAA 57.161 37.500 0.00 0.00 0.00 1.52
2898 2963 6.839124 TTTATCCTACGTGTCACTCCTAAA 57.161 37.500 0.00 0.00 0.00 1.85
2899 2964 6.604396 TCATTTATCCTACGTGTCACTCCTAA 59.396 38.462 0.00 0.00 0.00 2.69
2900 2965 6.124340 TCATTTATCCTACGTGTCACTCCTA 58.876 40.000 0.00 0.00 0.00 2.94
2901 2966 4.954202 TCATTTATCCTACGTGTCACTCCT 59.046 41.667 0.00 0.00 0.00 3.69
2902 2967 5.258456 TCATTTATCCTACGTGTCACTCC 57.742 43.478 0.00 0.00 0.00 3.85
2903 2968 6.504398 TCATCATTTATCCTACGTGTCACTC 58.496 40.000 0.00 0.00 0.00 3.51
2904 2969 6.461648 CCTCATCATTTATCCTACGTGTCACT 60.462 42.308 0.00 0.00 0.00 3.41
2905 2970 5.692204 CCTCATCATTTATCCTACGTGTCAC 59.308 44.000 0.00 0.00 0.00 3.67
2906 2971 5.362717 ACCTCATCATTTATCCTACGTGTCA 59.637 40.000 0.00 0.00 0.00 3.58
2907 2972 5.692204 CACCTCATCATTTATCCTACGTGTC 59.308 44.000 0.00 0.00 0.00 3.67
2908 2973 5.453339 CCACCTCATCATTTATCCTACGTGT 60.453 44.000 0.00 0.00 0.00 4.49
2909 2974 4.991056 CCACCTCATCATTTATCCTACGTG 59.009 45.833 0.00 0.00 0.00 4.49
2910 2975 4.899457 TCCACCTCATCATTTATCCTACGT 59.101 41.667 0.00 0.00 0.00 3.57
2911 2976 5.468540 TCCACCTCATCATTTATCCTACG 57.531 43.478 0.00 0.00 0.00 3.51
2912 2977 5.544176 TCCTCCACCTCATCATTTATCCTAC 59.456 44.000 0.00 0.00 0.00 3.18
2913 2978 5.726560 TCCTCCACCTCATCATTTATCCTA 58.273 41.667 0.00 0.00 0.00 2.94
2914 2979 4.570926 TCCTCCACCTCATCATTTATCCT 58.429 43.478 0.00 0.00 0.00 3.24
2915 2980 4.594920 TCTCCTCCACCTCATCATTTATCC 59.405 45.833 0.00 0.00 0.00 2.59
2916 2981 5.541868 TCTCTCCTCCACCTCATCATTTATC 59.458 44.000 0.00 0.00 0.00 1.75
2917 2982 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
2918 2983 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
2919 2984 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
2920 2985 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
2921 2986 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
2922 2987 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
2923 2988 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
2924 2989 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
2925 2990 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
2926 2991 2.375146 GAGTTCTCTCTCCTCCACCTC 58.625 57.143 0.00 0.00 37.68 3.85
2927 2992 1.340600 CGAGTTCTCTCTCCTCCACCT 60.341 57.143 0.00 0.00 38.45 4.00
2928 2993 1.099689 CGAGTTCTCTCTCCTCCACC 58.900 60.000 0.00 0.00 38.45 4.61
2929 2994 1.828979 ACGAGTTCTCTCTCCTCCAC 58.171 55.000 0.00 0.00 38.45 4.02
2930 2995 3.263681 TCTTACGAGTTCTCTCTCCTCCA 59.736 47.826 0.00 0.00 38.45 3.86
2931 2996 3.876341 TCTTACGAGTTCTCTCTCCTCC 58.124 50.000 0.00 0.00 38.45 4.30
2932 2997 5.883503 TTTCTTACGAGTTCTCTCTCCTC 57.116 43.478 0.00 0.00 38.45 3.71
2933 2998 5.184287 CCTTTTCTTACGAGTTCTCTCTCCT 59.816 44.000 0.00 0.00 38.45 3.69
2934 2999 5.404096 CCTTTTCTTACGAGTTCTCTCTCC 58.596 45.833 0.00 0.00 38.45 3.71
2935 3000 4.860352 GCCTTTTCTTACGAGTTCTCTCTC 59.140 45.833 0.00 0.00 38.45 3.20
2936 3001 4.525100 AGCCTTTTCTTACGAGTTCTCTCT 59.475 41.667 0.00 0.00 38.45 3.10
2937 3002 4.811908 AGCCTTTTCTTACGAGTTCTCTC 58.188 43.478 0.00 0.00 37.35 3.20
2938 3003 4.875561 AGCCTTTTCTTACGAGTTCTCT 57.124 40.909 0.00 0.00 0.00 3.10
2939 3004 4.750598 ACAAGCCTTTTCTTACGAGTTCTC 59.249 41.667 0.00 0.00 0.00 2.87
2940 3005 4.704965 ACAAGCCTTTTCTTACGAGTTCT 58.295 39.130 0.00 0.00 0.00 3.01
2941 3006 4.750598 AGACAAGCCTTTTCTTACGAGTTC 59.249 41.667 0.00 0.00 0.00 3.01
2942 3007 4.704965 AGACAAGCCTTTTCTTACGAGTT 58.295 39.130 0.00 0.00 0.00 3.01
2943 3008 4.338379 AGACAAGCCTTTTCTTACGAGT 57.662 40.909 0.00 0.00 0.00 4.18
2944 3009 4.991687 AGAAGACAAGCCTTTTCTTACGAG 59.008 41.667 5.86 0.00 29.54 4.18
2945 3010 4.957296 AGAAGACAAGCCTTTTCTTACGA 58.043 39.130 5.86 0.00 29.54 3.43
2946 3011 4.991687 AGAGAAGACAAGCCTTTTCTTACG 59.008 41.667 5.86 0.00 35.01 3.18
2947 3012 6.869315 AAGAGAAGACAAGCCTTTTCTTAC 57.131 37.500 5.86 4.42 42.29 2.34
2948 3013 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
2949 3014 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
2950 3015 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
2951 3016 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
2952 3017 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
2987 3052 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
2988 3053 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
2989 3054 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
2990 3055 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
2991 3056 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
2992 3057 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
2993 3058 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
2994 3059 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
2995 3060 5.521735 GTGGTGAGACATATTGTGCTAAGAG 59.478 44.000 0.00 0.00 0.00 2.85
2996 3061 5.419542 GTGGTGAGACATATTGTGCTAAGA 58.580 41.667 0.00 0.00 0.00 2.10
2997 3062 4.268644 CGTGGTGAGACATATTGTGCTAAG 59.731 45.833 0.00 0.00 0.00 2.18
2998 3063 4.180817 CGTGGTGAGACATATTGTGCTAA 58.819 43.478 0.00 0.00 0.00 3.09
2999 3064 3.194755 ACGTGGTGAGACATATTGTGCTA 59.805 43.478 0.00 0.00 0.00 3.49
3000 3065 2.028112 ACGTGGTGAGACATATTGTGCT 60.028 45.455 0.00 0.00 0.00 4.40
3001 3066 2.346803 ACGTGGTGAGACATATTGTGC 58.653 47.619 0.00 0.00 0.00 4.57
3002 3067 5.356882 AAAACGTGGTGAGACATATTGTG 57.643 39.130 0.00 0.00 0.00 3.33
3003 3068 6.148811 CCTAAAAACGTGGTGAGACATATTGT 59.851 38.462 0.00 0.00 0.00 2.71
3004 3069 6.370442 TCCTAAAAACGTGGTGAGACATATTG 59.630 38.462 0.00 0.00 0.00 1.90
3005 3070 6.469410 TCCTAAAAACGTGGTGAGACATATT 58.531 36.000 0.00 0.00 0.00 1.28
3006 3071 6.045072 TCCTAAAAACGTGGTGAGACATAT 57.955 37.500 0.00 0.00 0.00 1.78
3007 3072 5.471556 TCCTAAAAACGTGGTGAGACATA 57.528 39.130 0.00 0.00 0.00 2.29
3008 3073 4.345859 TCCTAAAAACGTGGTGAGACAT 57.654 40.909 0.00 0.00 0.00 3.06
3009 3074 3.823281 TCCTAAAAACGTGGTGAGACA 57.177 42.857 0.00 0.00 0.00 3.41
3010 3075 5.163884 GCTATTCCTAAAAACGTGGTGAGAC 60.164 44.000 0.00 0.00 0.00 3.36
3011 3076 4.933400 GCTATTCCTAAAAACGTGGTGAGA 59.067 41.667 0.00 0.00 0.00 3.27
3012 3077 4.935808 AGCTATTCCTAAAAACGTGGTGAG 59.064 41.667 0.00 0.00 0.00 3.51
3013 3078 4.901868 AGCTATTCCTAAAAACGTGGTGA 58.098 39.130 0.00 0.00 0.00 4.02
3014 3079 5.873164 ACTAGCTATTCCTAAAAACGTGGTG 59.127 40.000 0.00 0.00 0.00 4.17
3015 3080 6.046290 ACTAGCTATTCCTAAAAACGTGGT 57.954 37.500 0.00 0.00 0.00 4.16
3016 3081 6.980051 AACTAGCTATTCCTAAAAACGTGG 57.020 37.500 0.00 0.00 0.00 4.94
3017 3082 9.916397 CAATAACTAGCTATTCCTAAAAACGTG 57.084 33.333 0.00 0.00 0.00 4.49
3018 3083 9.880157 TCAATAACTAGCTATTCCTAAAAACGT 57.120 29.630 0.00 0.00 0.00 3.99
3027 3092 9.157104 GCCTTATCTTCAATAACTAGCTATTCC 57.843 37.037 0.00 0.00 0.00 3.01
3028 3093 9.936759 AGCCTTATCTTCAATAACTAGCTATTC 57.063 33.333 0.00 0.00 0.00 1.75
3032 3097 9.148879 TCTTAGCCTTATCTTCAATAACTAGCT 57.851 33.333 0.00 0.00 0.00 3.32
3033 3098 9.765795 TTCTTAGCCTTATCTTCAATAACTAGC 57.234 33.333 0.00 0.00 0.00 3.42
3039 3104 9.561069 GGTCATTTCTTAGCCTTATCTTCAATA 57.439 33.333 0.00 0.00 0.00 1.90
3040 3105 8.277918 AGGTCATTTCTTAGCCTTATCTTCAAT 58.722 33.333 0.00 0.00 0.00 2.57
3041 3106 7.633789 AGGTCATTTCTTAGCCTTATCTTCAA 58.366 34.615 0.00 0.00 0.00 2.69
3042 3107 7.200434 AGGTCATTTCTTAGCCTTATCTTCA 57.800 36.000 0.00 0.00 0.00 3.02
3043 3108 9.785982 AATAGGTCATTTCTTAGCCTTATCTTC 57.214 33.333 0.00 0.00 0.00 2.87
3044 3109 9.566432 CAATAGGTCATTTCTTAGCCTTATCTT 57.434 33.333 0.00 0.00 0.00 2.40
3045 3110 8.718656 ACAATAGGTCATTTCTTAGCCTTATCT 58.281 33.333 0.00 0.00 0.00 1.98
3046 3111 8.910351 ACAATAGGTCATTTCTTAGCCTTATC 57.090 34.615 0.00 0.00 0.00 1.75
3048 3113 9.209048 TCTACAATAGGTCATTTCTTAGCCTTA 57.791 33.333 0.00 0.00 0.00 2.69
3049 3114 7.988028 GTCTACAATAGGTCATTTCTTAGCCTT 59.012 37.037 0.00 0.00 0.00 4.35
3050 3115 7.125811 TGTCTACAATAGGTCATTTCTTAGCCT 59.874 37.037 0.00 0.00 0.00 4.58
3051 3116 7.272978 TGTCTACAATAGGTCATTTCTTAGCC 58.727 38.462 0.00 0.00 0.00 3.93
3052 3117 8.894768 ATGTCTACAATAGGTCATTTCTTAGC 57.105 34.615 0.00 0.00 0.00 3.09
3055 3120 9.965902 AAAGATGTCTACAATAGGTCATTTCTT 57.034 29.630 0.00 0.00 0.00 2.52
3056 3121 9.965902 AAAAGATGTCTACAATAGGTCATTTCT 57.034 29.630 0.00 0.00 0.00 2.52
3082 3147 9.844790 CTTGCATGTAATTTAGAGATGTCAAAA 57.155 29.630 0.00 0.00 0.00 2.44
3083 3148 9.230122 TCTTGCATGTAATTTAGAGATGTCAAA 57.770 29.630 0.00 0.00 0.00 2.69
3084 3149 8.668353 GTCTTGCATGTAATTTAGAGATGTCAA 58.332 33.333 0.00 0.00 0.00 3.18
3085 3150 8.043113 AGTCTTGCATGTAATTTAGAGATGTCA 58.957 33.333 0.00 0.00 0.00 3.58
3086 3151 8.430801 AGTCTTGCATGTAATTTAGAGATGTC 57.569 34.615 0.00 0.00 0.00 3.06
3087 3152 8.798859 AAGTCTTGCATGTAATTTAGAGATGT 57.201 30.769 0.00 0.00 0.00 3.06
3100 3165 9.757227 GATAGTCTTATCTTAAGTCTTGCATGT 57.243 33.333 1.63 0.00 34.16 3.21
3101 3166 9.979578 AGATAGTCTTATCTTAAGTCTTGCATG 57.020 33.333 1.63 0.00 42.67 4.06
3119 3184 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
3120 3185 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
3121 3186 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
3122 3187 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
3123 3188 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
3124 3189 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
3125 3190 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
3126 3191 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
3127 3192 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
3128 3193 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
3129 3194 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
3130 3195 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
3131 3196 4.462483 ACTTTAGGGCATGTACAATGGTTG 59.538 41.667 0.00 0.00 0.00 3.77
3132 3197 4.672899 ACTTTAGGGCATGTACAATGGTT 58.327 39.130 0.00 0.00 0.00 3.67
3133 3198 4.316025 ACTTTAGGGCATGTACAATGGT 57.684 40.909 0.00 0.00 0.00 3.55
3134 3199 5.659440 AAACTTTAGGGCATGTACAATGG 57.341 39.130 0.00 0.00 0.00 3.16
3135 3200 9.730420 GTATAAAACTTTAGGGCATGTACAATG 57.270 33.333 0.00 0.12 0.00 2.82
3136 3201 9.695155 AGTATAAAACTTTAGGGCATGTACAAT 57.305 29.630 0.00 0.00 33.35 2.71
3137 3202 9.523168 AAGTATAAAACTTTAGGGCATGTACAA 57.477 29.630 0.00 0.00 46.61 2.41
3182 3247 0.681733 GGCGGCTCTGATAGATCCAA 59.318 55.000 0.00 0.00 30.07 3.53
3183 3248 0.469892 TGGCGGCTCTGATAGATCCA 60.470 55.000 11.43 0.00 30.07 3.41
3415 3480 1.545582 CAATCAGTGGGCGGTCAAAAT 59.454 47.619 0.00 0.00 0.00 1.82
3448 3513 8.677148 TTTACAGTCTGCTAGTTCATTTTCTT 57.323 30.769 0.00 0.00 0.00 2.52
3465 3531 1.305930 CGCCCAAGCCCTTTACAGTC 61.306 60.000 0.00 0.00 34.57 3.51
3649 3715 3.565905 CTCAACATCTTTTGTGGAGCC 57.434 47.619 0.00 0.00 46.79 4.70
3689 3759 3.951775 ATCTATCAGCTCCGATTGACC 57.048 47.619 1.32 0.00 31.47 4.02
3697 3767 5.045140 AGAGGGAGTACTATCTATCAGCTCC 60.045 48.000 0.00 0.00 40.01 4.70
3715 3785 9.040259 CCATTCTTATATTATGAGACAGAGGGA 57.960 37.037 0.00 0.00 0.00 4.20
3716 3786 8.820831 ACCATTCTTATATTATGAGACAGAGGG 58.179 37.037 0.00 0.00 0.00 4.30
3734 3804 8.860088 AGCTAACATAGTTTGAAAACCATTCTT 58.140 29.630 2.34 0.00 39.71 2.52
3735 3805 8.409358 AGCTAACATAGTTTGAAAACCATTCT 57.591 30.769 2.34 0.00 39.71 2.40
3736 3806 8.915654 CAAGCTAACATAGTTTGAAAACCATTC 58.084 33.333 7.87 0.00 46.07 2.67
3737 3807 8.816640 CAAGCTAACATAGTTTGAAAACCATT 57.183 30.769 7.87 0.00 46.07 3.16
3746 3816 7.908193 ACGTTTTTCAAGCTAACATAGTTTG 57.092 32.000 7.42 7.42 45.01 2.93
3747 3817 8.403236 AGAACGTTTTTCAAGCTAACATAGTTT 58.597 29.630 0.46 0.00 0.00 2.66
3748 3818 7.927048 AGAACGTTTTTCAAGCTAACATAGTT 58.073 30.769 0.46 0.00 0.00 2.24
3749 3819 7.492352 AGAACGTTTTTCAAGCTAACATAGT 57.508 32.000 0.46 0.00 0.00 2.12
3758 3828 9.233232 CCCATAATATAAGAACGTTTTTCAAGC 57.767 33.333 7.42 0.00 0.00 4.01
3761 3831 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
3762 3832 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
3763 3833 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3764 3834 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3765 3835 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3766 3836 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3767 3837 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3768 3838 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3769 3839 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3770 3840 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3771 3841 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3772 3842 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3773 3843 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3774 3844 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3775 3845 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3776 3846 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
3777 3847 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3778 3848 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3779 3849 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3780 3850 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3781 3851 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3782 3852 0.464452 CAATGTACTCCCTCCGTCCC 59.536 60.000 0.00 0.00 0.00 4.46
3783 3853 1.192428 ACAATGTACTCCCTCCGTCC 58.808 55.000 0.00 0.00 0.00 4.79
3784 3854 2.361438 CCTACAATGTACTCCCTCCGTC 59.639 54.545 0.00 0.00 0.00 4.79
3785 3855 2.292061 ACCTACAATGTACTCCCTCCGT 60.292 50.000 0.00 0.00 0.00 4.69
3786 3856 2.385803 ACCTACAATGTACTCCCTCCG 58.614 52.381 0.00 0.00 0.00 4.63
3787 3857 4.031611 AGAACCTACAATGTACTCCCTCC 58.968 47.826 0.00 0.00 0.00 4.30
3788 3858 4.710375 TCAGAACCTACAATGTACTCCCTC 59.290 45.833 0.00 0.00 0.00 4.30
3789 3859 4.684724 TCAGAACCTACAATGTACTCCCT 58.315 43.478 0.00 0.00 0.00 4.20
3790 3860 5.046520 AGTTCAGAACCTACAATGTACTCCC 60.047 44.000 9.85 0.00 0.00 4.30
3791 3861 6.038997 AGTTCAGAACCTACAATGTACTCC 57.961 41.667 9.85 0.00 0.00 3.85
3792 3862 7.828712 ACTAGTTCAGAACCTACAATGTACTC 58.171 38.462 9.85 0.00 0.00 2.59
3793 3863 7.450634 TGACTAGTTCAGAACCTACAATGTACT 59.549 37.037 9.85 0.00 0.00 2.73
3794 3864 7.600065 TGACTAGTTCAGAACCTACAATGTAC 58.400 38.462 9.85 0.00 0.00 2.90
4059 4131 1.270826 CTTCTCGCTGAGTTCCAGACA 59.729 52.381 0.00 0.00 45.78 3.41
4182 4254 8.608844 AAGACAAGACAGACCAATACTAAAAG 57.391 34.615 0.00 0.00 0.00 2.27
4247 4319 3.142951 TCAATTGGTCCAAAGTACACCG 58.857 45.455 8.75 0.00 32.27 4.94
4303 4375 5.586877 AGGATGTCAACCTGGTTACTACTA 58.413 41.667 12.53 3.39 36.30 1.82
4304 4376 4.426704 AGGATGTCAACCTGGTTACTACT 58.573 43.478 12.53 3.57 36.30 2.57
4305 4377 4.820894 AGGATGTCAACCTGGTTACTAC 57.179 45.455 12.53 11.20 36.30 2.73
4319 4391 6.410540 ACTTCCTCTGTTGATTAAGGATGTC 58.589 40.000 0.00 0.00 40.38 3.06
4346 4418 3.006752 GGATGGAAGATGCTCCTAGTGAG 59.993 52.174 4.39 4.39 44.47 3.51
4347 4419 2.968574 GGATGGAAGATGCTCCTAGTGA 59.031 50.000 0.00 0.00 36.35 3.41
4348 4420 2.702478 TGGATGGAAGATGCTCCTAGTG 59.298 50.000 0.00 0.00 36.35 2.74
4349 4421 2.703007 GTGGATGGAAGATGCTCCTAGT 59.297 50.000 0.00 0.00 36.35 2.57
4350 4422 2.971330 AGTGGATGGAAGATGCTCCTAG 59.029 50.000 0.00 0.00 36.35 3.02
4351 4423 2.968574 GAGTGGATGGAAGATGCTCCTA 59.031 50.000 0.00 0.00 36.35 2.94
4352 4424 1.767681 GAGTGGATGGAAGATGCTCCT 59.232 52.381 0.00 0.00 36.35 3.69
4353 4425 1.539929 CGAGTGGATGGAAGATGCTCC 60.540 57.143 0.00 0.00 35.88 4.70
4354 4426 1.137872 ACGAGTGGATGGAAGATGCTC 59.862 52.381 0.00 0.00 0.00 4.26
4355 4427 1.198713 ACGAGTGGATGGAAGATGCT 58.801 50.000 0.00 0.00 0.00 3.79
4356 4428 2.029838 AACGAGTGGATGGAAGATGC 57.970 50.000 0.00 0.00 0.00 3.91
4357 4429 4.123497 TGTAACGAGTGGATGGAAGATG 57.877 45.455 0.00 0.00 0.00 2.90
4358 4430 4.819105 TTGTAACGAGTGGATGGAAGAT 57.181 40.909 0.00 0.00 0.00 2.40
4359 4431 4.610605 TTTGTAACGAGTGGATGGAAGA 57.389 40.909 0.00 0.00 0.00 2.87
4360 4432 5.334879 CCTTTTTGTAACGAGTGGATGGAAG 60.335 44.000 0.00 0.00 0.00 3.46
4361 4433 4.517453 CCTTTTTGTAACGAGTGGATGGAA 59.483 41.667 0.00 0.00 0.00 3.53
4362 4434 4.069304 CCTTTTTGTAACGAGTGGATGGA 58.931 43.478 0.00 0.00 0.00 3.41
4363 4435 3.818773 ACCTTTTTGTAACGAGTGGATGG 59.181 43.478 0.00 0.00 0.00 3.51
4364 4436 4.274950 ACACCTTTTTGTAACGAGTGGATG 59.725 41.667 0.00 0.00 0.00 3.51
4365 4437 4.274950 CACACCTTTTTGTAACGAGTGGAT 59.725 41.667 0.00 0.00 0.00 3.41
4366 4438 3.623960 CACACCTTTTTGTAACGAGTGGA 59.376 43.478 0.00 0.00 0.00 4.02
4367 4439 3.242936 CCACACCTTTTTGTAACGAGTGG 60.243 47.826 0.00 0.00 38.15 4.00
4368 4440 3.790789 GCCACACCTTTTTGTAACGAGTG 60.791 47.826 0.00 0.00 0.00 3.51
4369 4441 2.356695 GCCACACCTTTTTGTAACGAGT 59.643 45.455 0.00 0.00 0.00 4.18
4370 4442 2.616842 AGCCACACCTTTTTGTAACGAG 59.383 45.455 0.00 0.00 0.00 4.18
4371 4443 2.645802 AGCCACACCTTTTTGTAACGA 58.354 42.857 0.00 0.00 0.00 3.85
4372 4444 4.555348 TTAGCCACACCTTTTTGTAACG 57.445 40.909 0.00 0.00 0.00 3.18
4373 4445 5.627780 CGAATTAGCCACACCTTTTTGTAAC 59.372 40.000 0.00 0.00 0.00 2.50
4408 4492 2.103941 CTCTGTCCCAGGGAAGCTAATC 59.896 54.545 10.89 0.00 32.95 1.75
4456 4540 2.005370 TTAGGGGTATAGAGTGGCGG 57.995 55.000 0.00 0.00 0.00 6.13
4491 4575 9.988815 GCAACTTCCTAAGAATGATAGATTAGA 57.011 33.333 0.00 0.00 0.00 2.10
4509 4593 5.105064 TACTATGTAGTGGGAAGCAACTTCC 60.105 44.000 16.46 16.46 45.79 3.46
4519 4603 9.656323 ATGTTAAGAGAATACTATGTAGTGGGA 57.344 33.333 3.00 0.00 37.10 4.37
4530 4614 7.067494 GGACCATTTGCATGTTAAGAGAATACT 59.933 37.037 0.00 0.00 0.00 2.12
4634 4727 1.352156 CGGTCGCTTCTGTTACCAGC 61.352 60.000 0.00 0.00 38.66 4.85
4683 4778 7.209475 GTGGTCCATTGAATTGAAGAGAAAAA 58.791 34.615 0.00 0.00 0.00 1.94
4686 4781 4.455533 CGTGGTCCATTGAATTGAAGAGAA 59.544 41.667 0.00 0.00 0.00 2.87
4690 4785 2.819608 ACCGTGGTCCATTGAATTGAAG 59.180 45.455 0.00 0.00 0.00 3.02
4694 4789 4.007659 GAGTAACCGTGGTCCATTGAATT 58.992 43.478 0.00 0.00 0.00 2.17
4699 4794 1.278127 CCAGAGTAACCGTGGTCCATT 59.722 52.381 0.00 0.00 0.00 3.16
4717 4812 4.021104 TGTTGTTGTTGTTGTTGGAATCCA 60.021 37.500 0.00 0.00 0.00 3.41
4718 4813 4.499183 TGTTGTTGTTGTTGTTGGAATCC 58.501 39.130 0.00 0.00 0.00 3.01
4719 4814 5.406780 TGTTGTTGTTGTTGTTGTTGGAATC 59.593 36.000 0.00 0.00 0.00 2.52
4720 4815 5.300752 TGTTGTTGTTGTTGTTGTTGGAAT 58.699 33.333 0.00 0.00 0.00 3.01
4721 4816 4.693283 TGTTGTTGTTGTTGTTGTTGGAA 58.307 34.783 0.00 0.00 0.00 3.53
4722 4817 4.322080 TGTTGTTGTTGTTGTTGTTGGA 57.678 36.364 0.00 0.00 0.00 3.53
4723 4818 5.409643 TTTGTTGTTGTTGTTGTTGTTGG 57.590 34.783 0.00 0.00 0.00 3.77
4794 4889 3.091633 CCATGAGTTGGTTGGGAGATT 57.908 47.619 0.00 0.00 40.99 2.40
4939 5034 1.645034 CGTGCGGAGAATGTCAAGAT 58.355 50.000 0.00 0.00 0.00 2.40
4996 5091 2.961062 GGTTTGGGCATATTCAGCTCAT 59.039 45.455 0.00 0.00 43.00 2.90
4999 5094 2.530460 TGGTTTGGGCATATTCAGCT 57.470 45.000 0.00 0.00 0.00 4.24
5139 5234 2.431419 TCAACAGTTAGGTGTGACGGAA 59.569 45.455 0.00 0.00 35.97 4.30
5302 5397 2.006888 GAACCATCGAATCAAAGCCGA 58.993 47.619 0.00 0.00 36.72 5.54
5663 5758 4.624882 CGATTAAGATAGGACTGCATCAGC 59.375 45.833 0.00 0.00 42.57 4.26
5699 5794 2.060326 TCGAACAAGTGATGTCGACC 57.940 50.000 14.12 0.00 42.99 4.79
5787 5882 0.187117 TCATGTGGTGGGCCTTGAAA 59.813 50.000 4.53 0.00 35.27 2.69
5789 5884 1.074775 GTCATGTGGTGGGCCTTGA 59.925 57.895 4.53 0.00 35.27 3.02
5837 5932 5.008980 TGCATATGGTGTTCATTGACTTGA 58.991 37.500 4.56 0.00 37.30 3.02
5889 5984 7.148373 GCCATTTTCTTGGTACGACAACTTATA 60.148 37.037 0.00 0.00 39.11 0.98
5958 6053 1.683917 AGAAGAGTGACAAGCGTGACT 59.316 47.619 6.65 0.00 42.81 3.41
5972 6067 2.370281 TGAGCACCGCTTAAGAAGAG 57.630 50.000 6.67 0.00 39.88 2.85
6270 6366 0.109319 GTTTTGTGCGGCGAATCCAT 60.109 50.000 12.98 0.00 34.01 3.41
6320 6416 7.106239 GGAGAATGAGAGTTCTACCATTGAAA 58.894 38.462 0.00 0.00 38.51 2.69
6350 6446 2.987821 GAGTACTTCGACAAGCTGTTCC 59.012 50.000 0.00 0.00 32.09 3.62
6388 6484 1.203523 CTTGGTGAAGGACGAGGAGAG 59.796 57.143 0.00 0.00 0.00 3.20
6606 6702 3.176552 CTGGATAGGAGTGCAGACAAG 57.823 52.381 0.00 0.00 39.62 3.16
6639 6735 7.752686 GCGATTAAAGAGAAGAAAGATTGCTTT 59.247 33.333 0.00 0.00 46.62 3.51
6739 6835 0.460311 ATTCGTAAGGTGGCCTCGAG 59.540 55.000 5.13 5.13 32.83 4.04
6740 6836 0.174845 CATTCGTAAGGTGGCCTCGA 59.825 55.000 3.32 2.02 30.89 4.04
6760 6856 2.499693 TGTGGATGAAGATGGCGACTTA 59.500 45.455 0.00 0.00 0.00 2.24
6927 7023 2.143876 AGCTGGTGGTTGTTGACTTT 57.856 45.000 0.00 0.00 0.00 2.66
7017 7113 8.443176 AGCCAGATTGATTTTATTATCCTCTCA 58.557 33.333 0.00 0.00 0.00 3.27
7027 7123 7.718753 CCAACTCTCTAGCCAGATTGATTTTAT 59.281 37.037 0.00 0.00 0.00 1.40
7028 7124 7.050377 CCAACTCTCTAGCCAGATTGATTTTA 58.950 38.462 0.00 0.00 0.00 1.52
7029 7125 5.884792 CCAACTCTCTAGCCAGATTGATTTT 59.115 40.000 0.00 0.00 0.00 1.82
7048 7144 4.386711 GTGACTTTTAGTAGTGGCCAACT 58.613 43.478 7.24 11.82 43.40 3.16
7530 7626 4.664688 AACCAAATGGAGAGGACAGAAT 57.335 40.909 6.42 0.00 38.94 2.40
7616 7712 2.295349 TGAAACGTAGGGTCTCTGACAC 59.705 50.000 0.00 0.00 36.00 3.67
7680 7777 1.207085 GACTCGACGAGTGCGAAGT 59.793 57.895 33.68 9.37 43.53 3.01
7715 7812 3.370527 CCCGGATGTAGTGGAAAATGAGT 60.371 47.826 0.73 0.00 0.00 3.41
7849 7948 0.772384 ACCCGGTGTGGTGGAAAATA 59.228 50.000 0.00 0.00 37.20 1.40
7905 8005 8.713708 TTTTATTGTTTGGGAATCCAGAGTAA 57.286 30.769 0.09 0.00 45.04 2.24
7906 8006 8.713708 TTTTTATTGTTTGGGAATCCAGAGTA 57.286 30.769 0.09 0.00 45.04 2.59
7907 8007 7.610580 TTTTTATTGTTTGGGAATCCAGAGT 57.389 32.000 0.09 0.00 45.04 3.24
7908 8008 7.765819 GGATTTTTATTGTTTGGGAATCCAGAG 59.234 37.037 0.09 0.00 45.04 3.35
7909 8009 7.236432 TGGATTTTTATTGTTTGGGAATCCAGA 59.764 33.333 10.02 0.00 43.46 3.86
7910 8010 7.334171 GTGGATTTTTATTGTTTGGGAATCCAG 59.666 37.037 13.45 0.00 46.75 3.86
7911 8011 7.017056 AGTGGATTTTTATTGTTTGGGAATCCA 59.983 33.333 10.02 10.02 45.09 3.41
7912 8012 7.394016 AGTGGATTTTTATTGTTTGGGAATCC 58.606 34.615 0.00 0.00 40.74 3.01
7946 8053 2.520069 GATCAAGAGAGGAGCGGGATA 58.480 52.381 0.00 0.00 0.00 2.59
7962 8069 4.592351 GGAGAGATGAAGATGGAAGGATCA 59.408 45.833 0.00 0.00 0.00 2.92
7968 8075 3.099905 ACGTGGAGAGATGAAGATGGAA 58.900 45.455 0.00 0.00 0.00 3.53
7970 8077 2.223923 GGACGTGGAGAGATGAAGATGG 60.224 54.545 0.00 0.00 0.00 3.51
8109 8236 0.466543 TATCAATCCGGGGGTTGTCG 59.533 55.000 10.35 0.00 0.00 4.35
8114 8241 2.578940 TGAAACTTATCAATCCGGGGGT 59.421 45.455 0.00 0.00 0.00 4.95
8126 8263 4.046286 TGGGAGCACCATTGAAACTTAT 57.954 40.909 1.58 0.00 46.80 1.73
8147 8288 1.212935 GGAATCATGTGGGTAGGCAGT 59.787 52.381 0.00 0.00 0.00 4.40
8172 8313 2.993899 ACAATACGGCAAGAAGAACTCG 59.006 45.455 0.00 0.00 0.00 4.18
8176 8317 6.385649 AGAAAAACAATACGGCAAGAAGAA 57.614 33.333 0.00 0.00 0.00 2.52
8177 8318 6.385649 AAGAAAAACAATACGGCAAGAAGA 57.614 33.333 0.00 0.00 0.00 2.87
8178 8319 7.360361 AGTAAGAAAAACAATACGGCAAGAAG 58.640 34.615 0.00 0.00 0.00 2.85
8234 8397 1.375908 GCCACGACCAGAGCAATCA 60.376 57.895 0.00 0.00 0.00 2.57
8243 8414 1.876416 GCAAGACTAAAGCCACGACCA 60.876 52.381 0.00 0.00 0.00 4.02
8246 8417 0.032952 ACGCAAGACTAAAGCCACGA 59.967 50.000 0.00 0.00 43.62 4.35
8291 8468 1.145156 CGGCATGGGACGGAACATA 59.855 57.895 0.00 0.00 43.57 2.29
8352 8552 1.676635 TGTGCCATCTTGCAGCCTC 60.677 57.895 0.00 0.00 43.02 4.70
8353 8553 1.975407 GTGTGCCATCTTGCAGCCT 60.975 57.895 0.00 0.00 43.02 4.58
8354 8554 2.270257 TGTGTGCCATCTTGCAGCC 61.270 57.895 0.00 0.00 43.02 4.85
8355 8555 1.080974 GTGTGTGCCATCTTGCAGC 60.081 57.895 0.00 0.00 43.02 5.25
8356 8556 0.039798 GTGTGTGTGCCATCTTGCAG 60.040 55.000 0.00 0.00 43.02 4.41
8357 8557 1.784036 CGTGTGTGTGCCATCTTGCA 61.784 55.000 0.00 0.00 39.37 4.08
8358 8558 1.081906 CGTGTGTGTGCCATCTTGC 60.082 57.895 0.00 0.00 0.00 4.01
8359 8559 0.514255 CTCGTGTGTGTGCCATCTTG 59.486 55.000 0.00 0.00 0.00 3.02
8360 8560 0.106708 ACTCGTGTGTGTGCCATCTT 59.893 50.000 0.00 0.00 0.00 2.40
8361 8561 0.966179 TACTCGTGTGTGTGCCATCT 59.034 50.000 0.00 0.00 0.00 2.90
8381 8583 3.490759 GTGTGAGACGGCCATGCG 61.491 66.667 2.24 0.00 0.00 4.73
8446 8648 1.017387 GCCGGTGAAGATGGATGAAC 58.983 55.000 1.90 0.00 0.00 3.18
8462 8664 0.755698 TAGGAAGACTGCTAGGGCCG 60.756 60.000 0.00 0.00 37.74 6.13
8476 8678 3.012722 CGGGGCTTGGGGTAGGAA 61.013 66.667 0.00 0.00 0.00 3.36
8486 8688 4.473520 CTGTGATCGCCGGGGCTT 62.474 66.667 14.85 3.26 39.32 4.35
8505 8707 2.029110 TGACAGAGTCATCAATGCGACA 60.029 45.455 0.00 0.00 37.67 4.35
8507 8709 2.417787 CCTGACAGAGTCATCAATGCGA 60.418 50.000 3.32 0.00 41.94 5.10
8510 8712 3.126514 GCAACCTGACAGAGTCATCAATG 59.873 47.826 3.32 0.41 41.94 2.82
8513 8715 1.693606 TGCAACCTGACAGAGTCATCA 59.306 47.619 3.32 0.00 41.94 3.07
8574 8780 2.838202 CGTTCATATGGGGGCCTATAGT 59.162 50.000 0.84 0.00 0.00 2.12
8605 8811 6.072175 GGCATTTTTGTACAGATTACCTGACA 60.072 38.462 0.00 0.00 45.78 3.58
8772 8979 7.472334 ACCTCATTATTCTGCACAAAGATTT 57.528 32.000 0.00 0.00 0.00 2.17
8787 8994 2.546795 GCTAGCAGCACGACCTCATTAT 60.547 50.000 10.63 0.00 41.89 1.28
8882 9094 7.593644 GCATTTTCTAAAAGAACACGGTACAAT 59.406 33.333 0.00 0.00 33.26 2.71
8965 9193 7.800155 ATACCCAAAATTTGTTGACCAAAAG 57.200 32.000 4.92 0.00 45.72 2.27
9095 9324 2.224523 TGAACTGCCTTCTGTGGGTTAG 60.225 50.000 0.00 0.00 0.00 2.34
9105 9640 7.559590 AATACTATGATTGTGAACTGCCTTC 57.440 36.000 0.00 0.00 0.00 3.46
9221 9756 4.641989 AGCTTCAACATGGGATTATGTCAC 59.358 41.667 0.00 0.00 40.24 3.67
9225 9760 5.591472 TCTTCAGCTTCAACATGGGATTATG 59.409 40.000 0.00 0.00 0.00 1.90
9228 9763 4.038271 TCTTCAGCTTCAACATGGGATT 57.962 40.909 0.00 0.00 0.00 3.01
9341 9880 9.823647 CTTCATCTTGTACCATGACTTATAGTT 57.176 33.333 0.00 0.00 0.00 2.24
9357 9896 6.652481 CAGAAGAACATACACCTTCATCTTGT 59.348 38.462 0.00 0.00 38.89 3.16
9521 10062 3.739401 AAGGTAAAGATGTCCCCTTGG 57.261 47.619 0.00 0.00 34.32 3.61
9554 10103 1.797025 GTGGAACTGGAGTACACTGC 58.203 55.000 0.00 0.00 34.93 4.40
9620 10170 9.570468 AGACACAATATGATAATGAGCAATCTT 57.430 29.630 0.00 0.00 0.00 2.40
9642 10199 7.962995 ATAGAGTTTATGAGACCTCAAGACA 57.037 36.000 3.62 0.00 43.58 3.41
9643 10200 9.092876 CAAATAGAGTTTATGAGACCTCAAGAC 57.907 37.037 3.62 3.82 43.58 3.01
9644 10201 8.816894 ACAAATAGAGTTTATGAGACCTCAAGA 58.183 33.333 3.62 0.00 43.58 3.02
9647 10204 8.198109 GCTACAAATAGAGTTTATGAGACCTCA 58.802 37.037 1.83 1.83 44.59 3.86
9648 10205 8.198109 TGCTACAAATAGAGTTTATGAGACCTC 58.802 37.037 0.00 0.00 0.00 3.85
9677 10234 9.337396 TCATAGCACCAAAACTAAATATACAGG 57.663 33.333 0.00 0.00 0.00 4.00
9767 10324 7.250569 CAAACTTAAGAGAAGAGCAAACAACA 58.749 34.615 10.09 0.00 0.00 3.33
9778 10336 6.980397 ACACAAATTGGCAAACTTAAGAGAAG 59.020 34.615 10.09 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.