Multiple sequence alignment - TraesCS3D01G168300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G168300 chr3D 100.000 2942 0 0 1 2942 142999197 142996256 0.000000e+00 5433.0
1 TraesCS3D01G168300 chr3D 85.901 766 95 7 1006 1763 360691468 360692228 0.000000e+00 804.0
2 TraesCS3D01G168300 chr3D 86.901 710 87 4 1064 1770 141410645 141411351 0.000000e+00 791.0
3 TraesCS3D01G168300 chr3D 86.969 706 83 6 1064 1763 147335983 147335281 0.000000e+00 785.0
4 TraesCS3D01G168300 chr3D 86.827 706 84 6 1064 1763 149205119 149205821 0.000000e+00 780.0
5 TraesCS3D01G168300 chr3D 93.575 358 22 1 2585 2942 142879674 142879318 1.550000e-147 532.0
6 TraesCS3D01G168300 chr3A 89.606 2588 160 48 50 2587 162753148 162750620 0.000000e+00 3188.0
7 TraesCS3D01G168300 chr3A 87.518 705 78 7 1064 1763 159832044 159832743 0.000000e+00 806.0
8 TraesCS3D01G168300 chr3A 86.846 707 82 8 1064 1763 166923477 166924179 0.000000e+00 780.0
9 TraesCS3D01G168300 chr3B 90.973 2127 111 29 1 2076 204849324 204847228 0.000000e+00 2789.0
10 TraesCS3D01G168300 chr3B 86.288 722 90 7 1048 1763 221912499 221913217 0.000000e+00 776.0
11 TraesCS3D01G168300 chr1D 95.265 359 16 1 2585 2942 407666120 407665762 4.260000e-158 568.0
12 TraesCS3D01G168300 chr1D 94.429 359 19 1 2585 2942 178501011 178501369 4.290000e-153 551.0
13 TraesCS3D01G168300 chr1D 94.134 358 20 1 2585 2942 356130194 356129838 7.170000e-151 544.0
14 TraesCS3D01G168300 chr7D 95.198 354 17 0 2584 2937 294054615 294054968 7.120000e-156 560.0
15 TraesCS3D01G168300 chr4D 94.429 359 20 0 2584 2942 306010858 306011216 1.190000e-153 553.0
16 TraesCS3D01G168300 chr6D 94.398 357 19 1 2585 2940 174387461 174387817 5.540000e-152 547.0
17 TraesCS3D01G168300 chr4B 93.370 362 24 0 2581 2942 525180640 525181001 1.200000e-148 536.0
18 TraesCS3D01G168300 chr2D 93.593 359 22 1 2585 2942 285400148 285400506 4.320000e-148 534.0
19 TraesCS3D01G168300 chr1A 100.000 28 0 0 1754 1781 66175820 66175847 5.000000e-03 52.8
20 TraesCS3D01G168300 chr1A 100.000 28 0 0 1754 1781 544042465 544042492 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G168300 chr3D 142996256 142999197 2941 True 5433 5433 100.000 1 2942 1 chr3D.!!$R2 2941
1 TraesCS3D01G168300 chr3D 360691468 360692228 760 False 804 804 85.901 1006 1763 1 chr3D.!!$F3 757
2 TraesCS3D01G168300 chr3D 141410645 141411351 706 False 791 791 86.901 1064 1770 1 chr3D.!!$F1 706
3 TraesCS3D01G168300 chr3D 147335281 147335983 702 True 785 785 86.969 1064 1763 1 chr3D.!!$R3 699
4 TraesCS3D01G168300 chr3D 149205119 149205821 702 False 780 780 86.827 1064 1763 1 chr3D.!!$F2 699
5 TraesCS3D01G168300 chr3A 162750620 162753148 2528 True 3188 3188 89.606 50 2587 1 chr3A.!!$R1 2537
6 TraesCS3D01G168300 chr3A 159832044 159832743 699 False 806 806 87.518 1064 1763 1 chr3A.!!$F1 699
7 TraesCS3D01G168300 chr3A 166923477 166924179 702 False 780 780 86.846 1064 1763 1 chr3A.!!$F2 699
8 TraesCS3D01G168300 chr3B 204847228 204849324 2096 True 2789 2789 90.973 1 2076 1 chr3B.!!$R1 2075
9 TraesCS3D01G168300 chr3B 221912499 221913217 718 False 776 776 86.288 1048 1763 1 chr3B.!!$F1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 890 0.025001 CTGCGCCAACGATTACGAAG 59.975 55.0 4.18 0.0 43.93 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2744 2834 0.093026 GTGCTCGATCGGTTGAAACG 59.907 55.0 16.41 0.0 0.0 3.6 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 235 2.186903 CAGCGCCGACCTACCAAT 59.813 61.111 2.29 0.00 0.00 3.16
233 236 1.449601 CAGCGCCGACCTACCAATT 60.450 57.895 2.29 0.00 0.00 2.32
285 313 5.299279 CAGAGAAACCAAAGTCTAAGCCAAA 59.701 40.000 0.00 0.00 0.00 3.28
301 329 1.898574 AAAGTCGCAAGCACCCAGG 60.899 57.895 0.00 0.00 37.18 4.45
307 335 2.594303 CAAGCACCCAGGCGTTCA 60.594 61.111 0.00 0.00 39.27 3.18
310 338 4.643387 GCACCCAGGCGTTCAGGT 62.643 66.667 0.00 0.00 0.00 4.00
532 570 3.620300 TTCCGCAGCGTCCTACGTG 62.620 63.158 15.05 0.00 44.73 4.49
557 595 2.533942 GCGTGTGCGAATTTGAAAGTTT 59.466 40.909 0.00 0.00 41.33 2.66
574 612 6.488683 TGAAAGTTTGGAACTATGTCCGAAAT 59.511 34.615 0.00 0.00 41.78 2.17
606 646 2.159626 CGGTTGGTAAATAACGCTGTGG 60.160 50.000 0.00 0.00 0.00 4.17
633 673 2.343758 GAACTGCCAGCACCGAGA 59.656 61.111 0.00 0.00 0.00 4.04
634 674 1.739562 GAACTGCCAGCACCGAGAG 60.740 63.158 0.00 0.00 0.00 3.20
794 842 1.003839 TCATGAGGTCGGTTGCCAC 60.004 57.895 0.00 0.00 0.00 5.01
837 890 0.025001 CTGCGCCAACGATTACGAAG 59.975 55.000 4.18 0.00 43.93 3.79
946 999 4.216257 CACACTGATTCAATCCCGAGTTTT 59.784 41.667 0.00 0.00 0.00 2.43
955 1008 1.375523 CCCGAGTTTTCCCGGTCTG 60.376 63.158 0.00 0.00 43.93 3.51
1004 1057 2.100991 GCACGCAGCTTACATGGC 59.899 61.111 0.00 0.00 41.15 4.40
1074 1131 1.801332 CCATGAGCTGCAGCAAGAC 59.199 57.895 38.24 25.09 45.16 3.01
1263 1320 1.374758 GTTCTGCAGGGACCTCACG 60.375 63.158 15.13 0.00 0.00 4.35
1371 1429 1.905512 GGTAGGGACCAAGCGATGT 59.094 57.895 0.00 0.00 46.12 3.06
1431 1489 2.034879 CCGCACCATGCTCGAGTTT 61.035 57.895 15.13 0.00 42.25 2.66
1493 1551 1.452833 GCTGGATCAACCTGAGGGC 60.453 63.158 2.38 0.00 39.52 5.19
1494 1552 1.919600 GCTGGATCAACCTGAGGGCT 61.920 60.000 2.38 0.00 39.52 5.19
1943 2023 4.452455 GCTGTTAGTGTGTAGCAACTGAAT 59.548 41.667 0.00 0.00 36.24 2.57
1974 2054 7.962373 CACGACATGAGTCTGAGATTCTATATC 59.038 40.741 6.53 0.00 42.73 1.63
1991 2071 7.187244 TCTATATCGACTAGCATAATACGGC 57.813 40.000 0.00 0.00 0.00 5.68
1998 2078 0.528901 AGCATAATACGGCGCGTTGA 60.529 50.000 6.90 0.00 41.54 3.18
2003 2083 1.222766 AATACGGCGCGTTGACAACA 61.223 50.000 18.09 0.00 41.54 3.33
2012 2092 3.042189 CGCGTTGACAACAATGTTTGAT 58.958 40.909 18.09 0.00 42.84 2.57
2018 2098 6.402017 GTTGACAACAATGTTTGATGAAACG 58.598 36.000 13.52 0.00 43.92 3.60
2022 2102 6.096036 ACAACAATGTTTGATGAAACGAACA 58.904 32.000 3.29 0.00 43.92 3.18
2029 2109 6.202937 TGTTTGATGAAACGAACAATGTACC 58.797 36.000 3.29 0.00 43.92 3.34
2043 2123 7.462856 CGAACAATGTACCGACTCTTCAAATAG 60.463 40.741 2.65 0.00 0.00 1.73
2081 2164 8.484799 TCTTTATTTTACTATATGCAGCGTTCG 58.515 33.333 0.00 0.00 0.00 3.95
2082 2165 4.446857 TTTTACTATATGCAGCGTTCGC 57.553 40.909 9.24 9.24 0.00 4.70
2083 2166 2.785713 TACTATATGCAGCGTTCGCA 57.214 45.000 18.95 0.00 44.94 5.10
2084 2167 1.934589 ACTATATGCAGCGTTCGCAA 58.065 45.000 18.95 5.00 43.84 4.85
2085 2168 2.483876 ACTATATGCAGCGTTCGCAAT 58.516 42.857 18.95 11.44 43.84 3.56
2086 2169 2.872245 ACTATATGCAGCGTTCGCAATT 59.128 40.909 18.95 4.01 43.84 2.32
2087 2170 2.849880 ATATGCAGCGTTCGCAATTT 57.150 40.000 18.95 4.34 43.84 1.82
2088 2171 2.627863 TATGCAGCGTTCGCAATTTT 57.372 40.000 18.95 3.05 43.84 1.82
2129 2212 5.643421 AGGGCAATCTAGAATCAGACATT 57.357 39.130 0.00 0.00 0.00 2.71
2132 2221 7.753630 AGGGCAATCTAGAATCAGACATTATT 58.246 34.615 0.00 0.00 0.00 1.40
2145 2234 5.458779 TCAGACATTATTAGTCGCATGTTCG 59.541 40.000 0.00 0.00 40.84 3.95
2149 2238 6.837992 ACATTATTAGTCGCATGTTCGTTTT 58.162 32.000 0.00 0.00 0.00 2.43
2154 2243 6.656314 TTAGTCGCATGTTCGTTTTCATAT 57.344 33.333 0.00 0.00 0.00 1.78
2157 2246 6.040247 AGTCGCATGTTCGTTTTCATATAGA 58.960 36.000 0.00 0.00 0.00 1.98
2193 2282 7.592938 TGTTAAATGAACAATGAAGCCACTAG 58.407 34.615 0.00 0.00 45.23 2.57
2236 2325 8.969260 ATGCAGAAGAGTGATAATTATGAACA 57.031 30.769 1.78 0.00 0.00 3.18
2237 2326 8.969260 TGCAGAAGAGTGATAATTATGAACAT 57.031 30.769 1.78 0.00 0.00 2.71
2238 2327 9.049523 TGCAGAAGAGTGATAATTATGAACATC 57.950 33.333 1.78 2.59 0.00 3.06
2302 2391 7.948034 ATCCTTTATTTATTTTGTCCGGACA 57.052 32.000 33.23 33.23 39.98 4.02
2330 2419 1.958205 CGAGCTCATTCATCCGGCC 60.958 63.158 15.40 0.00 0.00 6.13
2333 2422 0.465097 AGCTCATTCATCCGGCCTTG 60.465 55.000 0.00 0.00 0.00 3.61
2336 2425 0.461870 TCATTCATCCGGCCTTGACG 60.462 55.000 0.00 0.00 0.00 4.35
2400 2489 0.463833 CCGAGGGGTTCTATTGTGGC 60.464 60.000 0.00 0.00 0.00 5.01
2417 2506 4.084265 CAGCATGCCACCAAGACA 57.916 55.556 15.66 0.00 0.00 3.41
2438 2527 5.181009 ACATAACATGTGTCATGTCAGAGG 58.819 41.667 14.36 0.54 43.01 3.69
2474 2563 3.055458 AGCTCCTTTGTTAGAGGCTCTTC 60.055 47.826 24.13 16.21 34.17 2.87
2475 2564 3.307059 GCTCCTTTGTTAGAGGCTCTTCA 60.307 47.826 24.13 18.56 34.17 3.02
2494 2583 0.721718 AATTAGTTCAGCACGCTCGC 59.278 50.000 0.00 0.00 0.00 5.03
2495 2584 0.389817 ATTAGTTCAGCACGCTCGCA 60.390 50.000 0.00 0.00 0.00 5.10
2496 2585 0.389817 TTAGTTCAGCACGCTCGCAT 60.390 50.000 0.00 0.00 0.00 4.73
2523 2612 3.907894 TCAAAAACATCGCCCAACTAC 57.092 42.857 0.00 0.00 0.00 2.73
2524 2613 2.554893 TCAAAAACATCGCCCAACTACC 59.445 45.455 0.00 0.00 0.00 3.18
2566 2656 8.789825 AATGTAATAATGCATGCCAAAGAAAA 57.210 26.923 16.68 0.00 31.74 2.29
2567 2657 8.789825 ATGTAATAATGCATGCCAAAGAAAAA 57.210 26.923 16.68 0.00 30.01 1.94
2578 2668 5.558818 TGCCAAAGAAAAATATGCATGGTT 58.441 33.333 10.16 1.02 0.00 3.67
2579 2669 5.642919 TGCCAAAGAAAAATATGCATGGTTC 59.357 36.000 10.16 7.34 0.00 3.62
2580 2670 5.642919 GCCAAAGAAAAATATGCATGGTTCA 59.357 36.000 10.16 0.00 0.00 3.18
2581 2671 6.316890 GCCAAAGAAAAATATGCATGGTTCAT 59.683 34.615 10.16 0.00 0.00 2.57
2582 2672 7.466320 GCCAAAGAAAAATATGCATGGTTCATC 60.466 37.037 10.16 6.51 0.00 2.92
2583 2673 7.549842 CCAAAGAAAAATATGCATGGTTCATCA 59.450 33.333 10.16 0.00 0.00 3.07
2584 2674 9.104965 CAAAGAAAAATATGCATGGTTCATCAT 57.895 29.630 10.16 0.00 0.00 2.45
2585 2675 8.657074 AAGAAAAATATGCATGGTTCATCATG 57.343 30.769 10.16 0.00 45.26 3.07
2586 2676 7.788026 AGAAAAATATGCATGGTTCATCATGT 58.212 30.769 10.16 0.00 44.54 3.21
2587 2677 8.262227 AGAAAAATATGCATGGTTCATCATGTT 58.738 29.630 10.16 0.00 44.54 2.71
2588 2678 7.780008 AAAATATGCATGGTTCATCATGTTG 57.220 32.000 10.16 0.00 44.54 3.33
2589 2679 3.812156 ATGCATGGTTCATCATGTTGG 57.188 42.857 0.00 0.00 44.54 3.77
2590 2680 1.826096 TGCATGGTTCATCATGTTGGG 59.174 47.619 3.98 0.00 44.54 4.12
2591 2681 2.101783 GCATGGTTCATCATGTTGGGA 58.898 47.619 3.98 0.00 44.54 4.37
2592 2682 2.496871 GCATGGTTCATCATGTTGGGAA 59.503 45.455 3.98 0.00 44.54 3.97
2593 2683 3.055963 GCATGGTTCATCATGTTGGGAAA 60.056 43.478 3.98 0.00 44.54 3.13
2594 2684 4.497300 CATGGTTCATCATGTTGGGAAAC 58.503 43.478 3.98 1.95 39.56 2.78
2595 2685 2.556189 TGGTTCATCATGTTGGGAAACG 59.444 45.455 3.98 0.00 29.66 3.60
2596 2686 2.556622 GGTTCATCATGTTGGGAAACGT 59.443 45.455 3.98 0.00 0.00 3.99
2597 2687 3.005367 GGTTCATCATGTTGGGAAACGTT 59.995 43.478 0.00 0.00 0.00 3.99
2598 2688 3.913548 TCATCATGTTGGGAAACGTTG 57.086 42.857 0.00 0.00 0.00 4.10
2599 2689 2.030363 TCATCATGTTGGGAAACGTTGC 60.030 45.455 0.00 0.00 0.00 4.17
2600 2690 1.393603 TCATGTTGGGAAACGTTGCA 58.606 45.000 8.91 0.00 0.00 4.08
2601 2691 1.959985 TCATGTTGGGAAACGTTGCAT 59.040 42.857 8.91 1.35 0.00 3.96
2602 2692 2.060284 CATGTTGGGAAACGTTGCATG 58.940 47.619 8.91 9.51 0.00 4.06
2603 2693 0.387202 TGTTGGGAAACGTTGCATGG 59.613 50.000 8.91 0.00 0.00 3.66
2604 2694 0.671251 GTTGGGAAACGTTGCATGGA 59.329 50.000 8.91 0.00 0.00 3.41
2605 2695 1.067821 GTTGGGAAACGTTGCATGGAA 59.932 47.619 8.91 0.00 0.00 3.53
2606 2696 1.403814 TGGGAAACGTTGCATGGAAA 58.596 45.000 8.91 0.00 0.00 3.13
2607 2697 1.757118 TGGGAAACGTTGCATGGAAAA 59.243 42.857 8.91 0.00 0.00 2.29
2608 2698 2.131972 GGGAAACGTTGCATGGAAAAC 58.868 47.619 8.91 0.00 0.00 2.43
2609 2699 2.482142 GGGAAACGTTGCATGGAAAACA 60.482 45.455 8.91 0.00 0.00 2.83
2610 2700 3.190874 GGAAACGTTGCATGGAAAACAA 58.809 40.909 8.91 0.00 0.00 2.83
2611 2701 3.619038 GGAAACGTTGCATGGAAAACAAA 59.381 39.130 8.91 0.00 0.00 2.83
2612 2702 4.093556 GGAAACGTTGCATGGAAAACAAAA 59.906 37.500 8.91 0.00 0.00 2.44
2613 2703 5.390991 GGAAACGTTGCATGGAAAACAAAAA 60.391 36.000 8.91 0.00 0.00 1.94
2635 2725 6.560253 AAAAATTCTACTCACACGCAAGAT 57.440 33.333 0.00 0.00 43.62 2.40
2636 2726 5.786401 AAATTCTACTCACACGCAAGATC 57.214 39.130 0.00 0.00 43.62 2.75
2637 2727 4.727507 ATTCTACTCACACGCAAGATCT 57.272 40.909 0.00 0.00 43.62 2.75
2638 2728 5.836821 ATTCTACTCACACGCAAGATCTA 57.163 39.130 0.00 0.00 43.62 1.98
2639 2729 5.836821 TTCTACTCACACGCAAGATCTAT 57.163 39.130 0.00 0.00 43.62 1.98
2640 2730 5.425577 TCTACTCACACGCAAGATCTATC 57.574 43.478 0.00 0.00 43.62 2.08
2641 2731 3.444703 ACTCACACGCAAGATCTATCC 57.555 47.619 0.00 0.00 43.62 2.59
2642 2732 2.760650 ACTCACACGCAAGATCTATCCA 59.239 45.455 0.00 0.00 43.62 3.41
2643 2733 3.386078 ACTCACACGCAAGATCTATCCAT 59.614 43.478 0.00 0.00 43.62 3.41
2644 2734 4.584743 ACTCACACGCAAGATCTATCCATA 59.415 41.667 0.00 0.00 43.62 2.74
2645 2735 5.126396 TCACACGCAAGATCTATCCATAG 57.874 43.478 0.00 0.00 43.62 2.23
2646 2736 4.827284 TCACACGCAAGATCTATCCATAGA 59.173 41.667 0.00 0.00 41.66 1.98
2647 2737 5.048434 TCACACGCAAGATCTATCCATAGAG 60.048 44.000 0.00 0.00 41.10 2.43
2648 2738 5.048434 CACACGCAAGATCTATCCATAGAGA 60.048 44.000 0.00 0.00 41.10 3.10
2649 2739 5.714333 ACACGCAAGATCTATCCATAGAGAT 59.286 40.000 0.00 0.00 41.10 2.75
2650 2740 6.035217 CACGCAAGATCTATCCATAGAGATG 58.965 44.000 0.00 3.16 41.10 2.90
2651 2741 5.042593 CGCAAGATCTATCCATAGAGATGC 58.957 45.833 14.90 14.90 42.20 3.91
2652 2742 5.393896 CGCAAGATCTATCCATAGAGATGCA 60.394 44.000 20.09 0.00 42.20 3.96
2653 2743 6.584488 GCAAGATCTATCCATAGAGATGCAT 58.416 40.000 17.65 0.00 42.20 3.96
2654 2744 7.469732 CGCAAGATCTATCCATAGAGATGCATA 60.470 40.741 20.09 0.00 42.20 3.14
2655 2745 7.868922 GCAAGATCTATCCATAGAGATGCATAG 59.131 40.741 17.65 0.00 42.20 2.23
2656 2746 7.528996 AGATCTATCCATAGAGATGCATAGC 57.471 40.000 0.00 0.00 42.20 2.97
2657 2747 7.068061 AGATCTATCCATAGAGATGCATAGCA 58.932 38.462 0.00 0.00 42.20 3.49
2658 2748 7.564292 AGATCTATCCATAGAGATGCATAGCAA 59.436 37.037 0.00 0.00 41.38 3.91
2659 2749 6.871844 TCTATCCATAGAGATGCATAGCAAC 58.128 40.000 0.00 0.00 34.82 4.17
2660 2750 3.917988 TCCATAGAGATGCATAGCAACG 58.082 45.455 0.00 0.00 43.62 4.10
2661 2751 3.573967 TCCATAGAGATGCATAGCAACGA 59.426 43.478 0.00 0.00 43.62 3.85
2662 2752 3.925299 CCATAGAGATGCATAGCAACGAG 59.075 47.826 0.00 0.00 43.62 4.18
2663 2753 4.321527 CCATAGAGATGCATAGCAACGAGA 60.322 45.833 0.00 0.00 43.62 4.04
2664 2754 3.367992 AGAGATGCATAGCAACGAGAG 57.632 47.619 0.00 0.00 43.62 3.20
2665 2755 2.035704 AGAGATGCATAGCAACGAGAGG 59.964 50.000 0.00 0.00 43.62 3.69
2666 2756 1.069823 AGATGCATAGCAACGAGAGGG 59.930 52.381 0.00 0.00 43.62 4.30
2667 2757 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
2668 2758 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
2669 2759 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
2670 2760 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
2671 2761 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
2672 2762 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2673 2763 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2674 2764 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2675 2765 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
2676 2766 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
2677 2767 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
2678 2768 0.322997 CGAGAGGGGAGAGTGTGTCT 60.323 60.000 0.00 0.00 38.71 3.41
2679 2769 1.065345 CGAGAGGGGAGAGTGTGTCTA 60.065 57.143 0.00 0.00 34.71 2.59
2680 2770 2.371306 GAGAGGGGAGAGTGTGTCTAC 58.629 57.143 0.00 0.00 34.71 2.59
2681 2771 1.096416 GAGGGGAGAGTGTGTCTACG 58.904 60.000 0.00 0.00 36.91 3.51
2682 2772 0.404812 AGGGGAGAGTGTGTCTACGT 59.595 55.000 0.00 0.00 36.91 3.57
2683 2773 1.632409 AGGGGAGAGTGTGTCTACGTA 59.368 52.381 0.00 0.00 36.91 3.57
2684 2774 1.742268 GGGGAGAGTGTGTCTACGTAC 59.258 57.143 0.00 0.00 36.91 3.67
2685 2775 1.742268 GGGAGAGTGTGTCTACGTACC 59.258 57.143 0.00 0.00 36.91 3.34
2686 2776 1.742268 GGAGAGTGTGTCTACGTACCC 59.258 57.143 0.00 0.00 34.71 3.69
2687 2777 2.617532 GGAGAGTGTGTCTACGTACCCT 60.618 54.545 0.00 0.00 34.71 4.34
2688 2778 2.677337 GAGAGTGTGTCTACGTACCCTC 59.323 54.545 0.00 0.00 34.71 4.30
2689 2779 1.396301 GAGTGTGTCTACGTACCCTCG 59.604 57.143 0.00 0.00 0.00 4.63
2690 2780 1.160137 GTGTGTCTACGTACCCTCGT 58.840 55.000 0.00 0.00 45.97 4.18
2691 2781 2.028112 AGTGTGTCTACGTACCCTCGTA 60.028 50.000 0.00 0.00 43.80 3.43
2697 2787 3.944476 ACGTACCCTCGTAGACTGT 57.056 52.632 0.00 0.00 42.35 3.55
2699 2789 3.334583 ACGTACCCTCGTAGACTGTAA 57.665 47.619 0.00 0.00 42.35 2.41
2700 2790 3.265791 ACGTACCCTCGTAGACTGTAAG 58.734 50.000 0.00 0.00 42.35 2.34
2701 2791 2.031437 CGTACCCTCGTAGACTGTAAGC 59.969 54.545 0.00 0.00 37.60 3.09
2702 2792 1.093159 ACCCTCGTAGACTGTAAGCG 58.907 55.000 0.00 0.00 37.60 4.68
2703 2793 0.381089 CCCTCGTAGACTGTAAGCGG 59.619 60.000 0.00 0.00 37.60 5.52
2704 2794 1.376543 CCTCGTAGACTGTAAGCGGA 58.623 55.000 0.00 0.00 37.60 5.54
2705 2795 1.741706 CCTCGTAGACTGTAAGCGGAA 59.258 52.381 0.00 0.00 37.60 4.30
2706 2796 2.223294 CCTCGTAGACTGTAAGCGGAAG 60.223 54.545 0.00 0.00 37.60 3.46
2720 2810 1.673760 CGGAAGCATTTGACAACACG 58.326 50.000 0.00 0.00 0.00 4.49
2721 2811 1.662876 CGGAAGCATTTGACAACACGG 60.663 52.381 0.00 0.00 0.00 4.94
2722 2812 1.336755 GGAAGCATTTGACAACACGGT 59.663 47.619 0.00 0.00 0.00 4.83
2723 2813 2.223711 GGAAGCATTTGACAACACGGTT 60.224 45.455 0.00 0.00 0.00 4.44
2724 2814 2.490328 AGCATTTGACAACACGGTTG 57.510 45.000 13.18 13.18 0.00 3.77
2725 2815 2.020720 AGCATTTGACAACACGGTTGA 58.979 42.857 19.38 2.26 0.00 3.18
2726 2816 2.622942 AGCATTTGACAACACGGTTGAT 59.377 40.909 19.38 7.37 0.00 2.57
2727 2817 2.725723 GCATTTGACAACACGGTTGATG 59.274 45.455 19.38 13.97 0.00 3.07
2728 2818 3.795150 GCATTTGACAACACGGTTGATGT 60.795 43.478 19.38 6.26 41.19 3.06
2729 2819 4.555708 GCATTTGACAACACGGTTGATGTA 60.556 41.667 19.38 6.41 38.76 2.29
2730 2820 4.804608 TTTGACAACACGGTTGATGTAG 57.195 40.909 19.38 0.00 38.76 2.74
2731 2821 3.462483 TGACAACACGGTTGATGTAGT 57.538 42.857 19.38 0.86 38.76 2.73
2732 2822 3.386486 TGACAACACGGTTGATGTAGTC 58.614 45.455 19.38 8.85 38.76 2.59
2733 2823 2.400399 ACAACACGGTTGATGTAGTCG 58.600 47.619 19.38 0.00 37.00 4.18
2734 2824 2.034939 ACAACACGGTTGATGTAGTCGA 59.965 45.455 19.38 0.00 37.00 4.20
2735 2825 3.054166 CAACACGGTTGATGTAGTCGAA 58.946 45.455 10.21 0.00 0.00 3.71
2736 2826 2.669364 ACACGGTTGATGTAGTCGAAC 58.331 47.619 0.00 0.00 0.00 3.95
2737 2827 2.295349 ACACGGTTGATGTAGTCGAACT 59.705 45.455 0.00 0.00 0.00 3.01
2738 2828 3.243636 ACACGGTTGATGTAGTCGAACTT 60.244 43.478 0.00 0.00 0.00 2.66
2739 2829 3.364023 CACGGTTGATGTAGTCGAACTTC 59.636 47.826 0.00 0.00 0.00 3.01
2740 2830 3.255149 ACGGTTGATGTAGTCGAACTTCT 59.745 43.478 0.00 0.00 0.00 2.85
2741 2831 4.235360 CGGTTGATGTAGTCGAACTTCTT 58.765 43.478 0.00 0.00 0.00 2.52
2742 2832 4.323868 CGGTTGATGTAGTCGAACTTCTTC 59.676 45.833 0.00 0.00 0.00 2.87
2751 2841 2.638628 CGAACTTCTTCGCGTTTCAA 57.361 45.000 5.77 0.00 42.72 2.69
2752 2842 2.287079 CGAACTTCTTCGCGTTTCAAC 58.713 47.619 5.77 0.00 42.72 3.18
2753 2843 2.636519 GAACTTCTTCGCGTTTCAACC 58.363 47.619 5.77 0.00 0.00 3.77
2754 2844 0.580104 ACTTCTTCGCGTTTCAACCG 59.420 50.000 5.77 0.00 0.00 4.44
2755 2845 0.856641 CTTCTTCGCGTTTCAACCGA 59.143 50.000 5.77 0.81 32.53 4.69
2756 2846 1.459592 CTTCTTCGCGTTTCAACCGAT 59.540 47.619 5.77 0.00 33.76 4.18
2757 2847 1.065358 TCTTCGCGTTTCAACCGATC 58.935 50.000 5.77 0.00 33.76 3.69
2758 2848 0.246757 CTTCGCGTTTCAACCGATCG 60.247 55.000 8.51 8.51 33.76 3.69
2759 2849 0.663867 TTCGCGTTTCAACCGATCGA 60.664 50.000 18.66 0.00 33.76 3.59
2760 2850 1.068832 TCGCGTTTCAACCGATCGAG 61.069 55.000 18.66 9.42 30.53 4.04
2761 2851 1.058903 GCGTTTCAACCGATCGAGC 59.941 57.895 18.66 5.01 0.00 5.03
2762 2852 1.623081 GCGTTTCAACCGATCGAGCA 61.623 55.000 18.66 0.00 0.00 4.26
2763 2853 0.093026 CGTTTCAACCGATCGAGCAC 59.907 55.000 18.66 3.41 0.00 4.40
2764 2854 0.442699 GTTTCAACCGATCGAGCACC 59.557 55.000 18.66 0.00 0.00 5.01
2765 2855 1.011968 TTTCAACCGATCGAGCACCG 61.012 55.000 18.66 0.27 40.25 4.94
2773 2863 2.174107 TCGAGCACCGAACGTACG 59.826 61.111 15.01 15.01 45.43 3.67
2780 2870 2.505557 CCGAACGTACGGCACCTC 60.506 66.667 21.06 6.84 46.20 3.85
2781 2871 2.505557 CGAACGTACGGCACCTCC 60.506 66.667 21.06 0.00 0.00 4.30
2790 2880 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
2791 2881 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
2792 2882 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
2793 2883 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2794 2884 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2795 2885 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2796 2886 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2797 2887 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2798 2888 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2799 2889 1.557443 CCGAGTTCAGCACACGTTCC 61.557 60.000 0.00 0.00 37.75 3.62
2800 2890 1.853319 GAGTTCAGCACACGTTCCG 59.147 57.895 0.00 0.00 0.00 4.30
2801 2891 2.159272 GAGTTCAGCACACGTTCCGC 62.159 60.000 0.00 0.00 0.00 5.54
2802 2892 2.108157 TTCAGCACACGTTCCGCT 59.892 55.556 0.00 0.00 36.10 5.52
2803 2893 1.954146 TTCAGCACACGTTCCGCTC 60.954 57.895 0.29 0.00 32.48 5.03
2804 2894 3.767230 CAGCACACGTTCCGCTCG 61.767 66.667 0.29 0.00 32.48 5.03
2805 2895 3.973516 AGCACACGTTCCGCTCGA 61.974 61.111 0.00 0.00 0.00 4.04
2806 2896 2.809601 GCACACGTTCCGCTCGAT 60.810 61.111 0.00 0.00 0.00 3.59
2807 2897 3.071459 GCACACGTTCCGCTCGATG 62.071 63.158 0.00 0.00 0.00 3.84
2808 2898 1.443702 CACACGTTCCGCTCGATGA 60.444 57.895 0.00 0.00 0.00 2.92
2809 2899 1.443872 ACACGTTCCGCTCGATGAC 60.444 57.895 0.00 0.00 0.00 3.06
2810 2900 2.202440 ACGTTCCGCTCGATGACG 60.202 61.111 0.00 9.24 39.43 4.35
2811 2901 2.202440 CGTTCCGCTCGATGACGT 60.202 61.111 0.00 0.00 40.69 4.34
2812 2902 2.215604 CGTTCCGCTCGATGACGTC 61.216 63.158 9.11 9.11 40.69 4.34
2813 2903 1.872679 GTTCCGCTCGATGACGTCC 60.873 63.158 14.12 0.00 40.69 4.79
2814 2904 2.044555 TTCCGCTCGATGACGTCCT 61.045 57.895 14.12 2.19 40.69 3.85
2815 2905 1.989966 TTCCGCTCGATGACGTCCTC 61.990 60.000 14.12 12.10 40.69 3.71
2816 2906 2.024871 CGCTCGATGACGTCCTCC 59.975 66.667 14.12 0.86 40.69 4.30
2817 2907 2.024871 GCTCGATGACGTCCTCCG 59.975 66.667 14.12 13.42 44.03 4.63
2818 2908 2.024871 CTCGATGACGTCCTCCGC 59.975 66.667 14.12 0.00 41.42 5.54
2819 2909 3.471244 CTCGATGACGTCCTCCGCC 62.471 68.421 14.12 0.00 41.42 6.13
2820 2910 3.518998 CGATGACGTCCTCCGCCT 61.519 66.667 14.12 0.00 41.42 5.52
2821 2911 2.893398 GATGACGTCCTCCGCCTT 59.107 61.111 14.12 0.00 41.42 4.35
2822 2912 1.227002 GATGACGTCCTCCGCCTTC 60.227 63.158 14.12 0.00 41.42 3.46
2823 2913 1.668101 GATGACGTCCTCCGCCTTCT 61.668 60.000 14.12 0.00 41.42 2.85
2824 2914 1.258445 ATGACGTCCTCCGCCTTCTT 61.258 55.000 14.12 0.00 41.42 2.52
2825 2915 1.446272 GACGTCCTCCGCCTTCTTG 60.446 63.158 3.51 0.00 41.42 3.02
2826 2916 1.874345 GACGTCCTCCGCCTTCTTGA 61.874 60.000 3.51 0.00 41.42 3.02
2827 2917 1.258445 ACGTCCTCCGCCTTCTTGAT 61.258 55.000 0.00 0.00 41.42 2.57
2828 2918 0.528684 CGTCCTCCGCCTTCTTGATC 60.529 60.000 0.00 0.00 0.00 2.92
2829 2919 0.179070 GTCCTCCGCCTTCTTGATCC 60.179 60.000 0.00 0.00 0.00 3.36
2830 2920 0.617535 TCCTCCGCCTTCTTGATCCA 60.618 55.000 0.00 0.00 0.00 3.41
2831 2921 0.179062 CCTCCGCCTTCTTGATCCAG 60.179 60.000 0.00 0.00 0.00 3.86
2832 2922 0.813210 CTCCGCCTTCTTGATCCAGC 60.813 60.000 0.00 0.00 0.00 4.85
2833 2923 1.078214 CCGCCTTCTTGATCCAGCA 60.078 57.895 0.00 0.00 0.00 4.41
2834 2924 0.677731 CCGCCTTCTTGATCCAGCAA 60.678 55.000 0.00 0.00 0.00 3.91
2835 2925 0.731417 CGCCTTCTTGATCCAGCAAG 59.269 55.000 0.00 0.00 45.10 4.01
2839 2929 3.840831 TCTTGATCCAGCAAGACGG 57.159 52.632 3.12 0.00 46.73 4.79
2840 2930 0.391661 TCTTGATCCAGCAAGACGGC 60.392 55.000 3.12 0.00 46.73 5.68
2841 2931 1.699656 CTTGATCCAGCAAGACGGCG 61.700 60.000 4.80 4.80 46.31 6.46
2842 2932 2.166130 TTGATCCAGCAAGACGGCGA 62.166 55.000 16.62 0.00 39.27 5.54
2843 2933 1.880340 GATCCAGCAAGACGGCGAG 60.880 63.158 16.62 0.95 39.27 5.03
2844 2934 3.376935 ATCCAGCAAGACGGCGAGG 62.377 63.158 16.62 3.52 39.27 4.63
2845 2935 4.379243 CCAGCAAGACGGCGAGGT 62.379 66.667 16.62 2.83 39.27 3.85
2846 2936 2.571757 CAGCAAGACGGCGAGGTA 59.428 61.111 16.62 0.00 39.27 3.08
2847 2937 1.517257 CAGCAAGACGGCGAGGTAG 60.517 63.158 16.62 0.00 39.27 3.18
2848 2938 1.977544 AGCAAGACGGCGAGGTAGT 60.978 57.895 16.62 0.00 39.27 2.73
2849 2939 1.805945 GCAAGACGGCGAGGTAGTG 60.806 63.158 16.62 3.63 0.00 2.74
2850 2940 1.153823 CAAGACGGCGAGGTAGTGG 60.154 63.158 16.62 0.00 0.00 4.00
2851 2941 1.303888 AAGACGGCGAGGTAGTGGA 60.304 57.895 16.62 0.00 0.00 4.02
2852 2942 0.683504 AAGACGGCGAGGTAGTGGAT 60.684 55.000 16.62 0.00 0.00 3.41
2853 2943 1.065928 GACGGCGAGGTAGTGGATG 59.934 63.158 16.62 0.00 0.00 3.51
2854 2944 1.379443 ACGGCGAGGTAGTGGATGA 60.379 57.895 16.62 0.00 0.00 2.92
2855 2945 1.360551 CGGCGAGGTAGTGGATGAG 59.639 63.158 0.00 0.00 0.00 2.90
2856 2946 1.384989 CGGCGAGGTAGTGGATGAGT 61.385 60.000 0.00 0.00 0.00 3.41
2857 2947 0.824759 GGCGAGGTAGTGGATGAGTT 59.175 55.000 0.00 0.00 0.00 3.01
2858 2948 1.202428 GGCGAGGTAGTGGATGAGTTC 60.202 57.143 0.00 0.00 0.00 3.01
2859 2949 1.202428 GCGAGGTAGTGGATGAGTTCC 60.202 57.143 0.00 0.00 45.69 3.62
2866 2956 2.268920 GGATGAGTTCCGGCAGCA 59.731 61.111 0.00 0.00 33.93 4.41
2867 2957 2.109126 GGATGAGTTCCGGCAGCAC 61.109 63.158 0.00 0.00 33.93 4.40
2868 2958 2.434884 ATGAGTTCCGGCAGCACG 60.435 61.111 0.00 0.00 0.00 5.34
2869 2959 2.835701 GATGAGTTCCGGCAGCACGA 62.836 60.000 0.00 0.00 35.47 4.35
2870 2960 3.112709 GAGTTCCGGCAGCACGAC 61.113 66.667 0.00 0.00 35.47 4.34
2888 2978 3.118454 GGCGTGGTGACGGTGATG 61.118 66.667 0.00 0.00 46.20 3.07
2889 2979 3.118454 GCGTGGTGACGGTGATGG 61.118 66.667 0.00 0.00 46.20 3.51
2890 2980 2.342279 CGTGGTGACGGTGATGGT 59.658 61.111 0.00 0.00 42.18 3.55
2891 2981 2.027073 CGTGGTGACGGTGATGGTG 61.027 63.158 0.00 0.00 42.18 4.17
2892 2982 1.369692 GTGGTGACGGTGATGGTGA 59.630 57.895 0.00 0.00 0.00 4.02
2893 2983 0.250124 GTGGTGACGGTGATGGTGAA 60.250 55.000 0.00 0.00 0.00 3.18
2894 2984 0.034756 TGGTGACGGTGATGGTGAAG 59.965 55.000 0.00 0.00 0.00 3.02
2895 2985 1.298859 GGTGACGGTGATGGTGAAGC 61.299 60.000 0.00 0.00 0.00 3.86
2896 2986 0.320771 GTGACGGTGATGGTGAAGCT 60.321 55.000 0.00 0.00 0.00 3.74
2897 2987 1.067142 GTGACGGTGATGGTGAAGCTA 60.067 52.381 0.00 0.00 0.00 3.32
2898 2988 1.831106 TGACGGTGATGGTGAAGCTAT 59.169 47.619 0.00 0.00 0.00 2.97
2899 2989 2.159099 TGACGGTGATGGTGAAGCTATC 60.159 50.000 0.00 0.00 35.86 2.08
2900 2990 2.101582 GACGGTGATGGTGAAGCTATCT 59.898 50.000 0.00 0.00 36.23 1.98
2901 2991 2.101582 ACGGTGATGGTGAAGCTATCTC 59.898 50.000 0.00 0.00 36.23 2.75
2902 2992 2.546795 CGGTGATGGTGAAGCTATCTCC 60.547 54.545 4.96 4.96 42.02 3.71
2903 2993 2.224402 GGTGATGGTGAAGCTATCTCCC 60.224 54.545 11.80 6.47 40.59 4.30
2904 2994 2.050144 TGATGGTGAAGCTATCTCCCC 58.950 52.381 11.80 0.00 40.35 4.81
2905 2995 2.050144 GATGGTGAAGCTATCTCCCCA 58.950 52.381 11.80 3.32 40.35 4.96
2906 2996 1.500474 TGGTGAAGCTATCTCCCCAG 58.500 55.000 11.80 0.00 40.35 4.45
2907 2997 0.761802 GGTGAAGCTATCTCCCCAGG 59.238 60.000 0.00 0.00 35.97 4.45
2908 2998 0.761802 GTGAAGCTATCTCCCCAGGG 59.238 60.000 0.00 0.00 0.00 4.45
2909 2999 1.056700 TGAAGCTATCTCCCCAGGGC 61.057 60.000 0.00 0.00 34.68 5.19
2910 3000 0.766288 GAAGCTATCTCCCCAGGGCT 60.766 60.000 0.00 0.00 34.68 5.19
2911 3001 0.327964 AAGCTATCTCCCCAGGGCTT 60.328 55.000 0.00 0.00 35.57 4.35
2912 3002 0.766288 AGCTATCTCCCCAGGGCTTC 60.766 60.000 0.00 0.00 34.68 3.86
2913 3003 1.056700 GCTATCTCCCCAGGGCTTCA 61.057 60.000 0.00 0.00 34.68 3.02
2914 3004 0.761802 CTATCTCCCCAGGGCTTCAC 59.238 60.000 0.00 0.00 34.68 3.18
2915 3005 0.694444 TATCTCCCCAGGGCTTCACC 60.694 60.000 0.00 0.00 37.93 4.02
2916 3006 2.498820 ATCTCCCCAGGGCTTCACCT 62.499 60.000 0.00 0.00 43.08 4.00
2917 3007 1.306997 CTCCCCAGGGCTTCACCTA 60.307 63.158 0.00 0.00 39.34 3.08
2918 3008 0.914417 CTCCCCAGGGCTTCACCTAA 60.914 60.000 0.00 0.00 39.34 2.69
2919 3009 0.914417 TCCCCAGGGCTTCACCTAAG 60.914 60.000 0.00 0.00 39.34 2.18
2933 3023 7.772332 CTTCACCTAAGCACTACGAAAATAT 57.228 36.000 0.00 0.00 0.00 1.28
2934 3024 7.534085 TTCACCTAAGCACTACGAAAATATG 57.466 36.000 0.00 0.00 0.00 1.78
2935 3025 6.869695 TCACCTAAGCACTACGAAAATATGA 58.130 36.000 0.00 0.00 0.00 2.15
2936 3026 6.755141 TCACCTAAGCACTACGAAAATATGAC 59.245 38.462 0.00 0.00 0.00 3.06
2937 3027 6.018994 CACCTAAGCACTACGAAAATATGACC 60.019 42.308 0.00 0.00 0.00 4.02
2938 3028 5.175126 CCTAAGCACTACGAAAATATGACCG 59.825 44.000 0.00 0.00 0.00 4.79
2939 3029 3.454375 AGCACTACGAAAATATGACCGG 58.546 45.455 0.00 0.00 0.00 5.28
2940 3030 2.542595 GCACTACGAAAATATGACCGGG 59.457 50.000 6.32 0.00 0.00 5.73
2941 3031 3.128349 CACTACGAAAATATGACCGGGG 58.872 50.000 6.32 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.728471 ACGAGAGGCCAGAAATATGATATG 58.272 41.667 5.01 0.00 0.00 1.78
18 19 1.293498 GCTGAACGAGAGGCCAGAA 59.707 57.895 5.01 0.00 36.98 3.02
74 77 4.764172 CTCAATTGTCCTTCTGGAGTAGG 58.236 47.826 5.13 0.00 44.16 3.18
252 257 0.320771 TGGTTTCTCTGCTTCGGCTC 60.321 55.000 0.00 0.00 42.37 4.70
301 329 2.126346 GCATGCCAACCTGAACGC 60.126 61.111 6.36 0.00 0.00 4.84
302 330 0.457166 CATGCATGCCAACCTGAACG 60.457 55.000 14.93 0.00 0.00 3.95
307 335 1.380785 CCCTCATGCATGCCAACCT 60.381 57.895 22.25 0.00 0.00 3.50
310 338 1.755395 GCTCCCTCATGCATGCCAA 60.755 57.895 22.25 3.99 0.00 4.52
347 382 4.899239 CTGGATCCTCGGGTGCGC 62.899 72.222 14.23 0.00 0.00 6.09
532 570 1.729131 CAAATTCGCACACGCACCC 60.729 57.895 0.00 0.00 39.84 4.61
547 585 5.823570 TCGGACATAGTTCCAAACTTTCAAA 59.176 36.000 0.00 0.00 42.81 2.69
549 587 4.963373 TCGGACATAGTTCCAAACTTTCA 58.037 39.130 0.00 0.00 42.81 2.69
551 589 6.348213 CGATTTCGGACATAGTTCCAAACTTT 60.348 38.462 0.00 0.00 38.09 2.66
557 595 4.459390 TTCGATTTCGGACATAGTTCCA 57.541 40.909 0.00 0.00 40.29 3.53
606 646 1.129437 GCTGGCAGTTCGAGTTCAATC 59.871 52.381 17.16 0.00 0.00 2.67
824 872 4.738252 TCGGATTCATCTTCGTAATCGTTG 59.262 41.667 0.00 0.00 38.33 4.10
837 890 1.801178 GGAGGCGAAATCGGATTCATC 59.199 52.381 3.28 0.00 40.23 2.92
946 999 2.747686 GCAAACTCCAGACCGGGA 59.252 61.111 6.32 0.00 34.36 5.14
955 1008 2.174319 GGATCGCCTCGCAAACTCC 61.174 63.158 0.00 0.00 0.00 3.85
993 1046 1.889105 CGCCATCGCCATGTAAGCT 60.889 57.895 0.00 0.00 0.00 3.74
1004 1057 3.417224 CCATGATCGGCGCCATCG 61.417 66.667 28.98 13.22 39.07 3.84
1074 1131 3.189287 CCACCACCAAGAAGAAATCGAAG 59.811 47.826 0.00 0.00 0.00 3.79
1263 1320 2.122989 TCCTCCTGCCGGATACCC 60.123 66.667 5.05 0.00 39.01 3.69
1266 1323 1.826921 GACGTCCTCCTGCCGGATA 60.827 63.158 5.05 0.00 39.01 2.59
1347 1404 2.608368 TTGGTCCCTACCCCCGTG 60.608 66.667 0.00 0.00 46.16 4.94
1355 1413 1.904771 CCACATCGCTTGGTCCCTA 59.095 57.895 0.00 0.00 0.00 3.53
1431 1489 2.032528 CCCTTGAAGCGGCACTCA 59.967 61.111 1.45 1.26 0.00 3.41
1772 1845 2.511373 TGCTTATGTGAGGCGGCG 60.511 61.111 0.51 0.51 0.00 6.46
1776 1849 1.709147 CGCAGGTGCTTATGTGAGGC 61.709 60.000 0.00 0.00 39.32 4.70
1777 1850 2.387309 CGCAGGTGCTTATGTGAGG 58.613 57.895 0.00 0.00 39.32 3.86
1974 2054 0.982673 GCGCCGTATTATGCTAGTCG 59.017 55.000 0.00 0.00 0.00 4.18
1991 2071 2.445316 TCAAACATTGTTGTCAACGCG 58.555 42.857 3.53 3.53 36.33 6.01
1998 2078 6.096036 TGTTCGTTTCATCAAACATTGTTGT 58.904 32.000 2.13 0.00 41.94 3.32
2003 2083 7.381139 GGTACATTGTTCGTTTCATCAAACATT 59.619 33.333 0.00 0.00 41.94 2.71
2012 2092 3.719924 AGTCGGTACATTGTTCGTTTCA 58.280 40.909 0.00 0.00 0.00 2.69
2018 2098 5.917541 TTTGAAGAGTCGGTACATTGTTC 57.082 39.130 0.00 0.00 0.00 3.18
2022 2102 9.886132 AATTACTATTTGAAGAGTCGGTACATT 57.114 29.630 0.00 0.00 32.00 2.71
2094 2177 8.379428 TCTAGATTGCCCTATTCTGCATATAA 57.621 34.615 0.00 0.00 37.33 0.98
2101 2184 6.873076 GTCTGATTCTAGATTGCCCTATTCTG 59.127 42.308 0.00 0.00 0.00 3.02
2113 2196 8.797438 TGCGACTAATAATGTCTGATTCTAGAT 58.203 33.333 0.00 0.00 32.70 1.98
2129 2212 6.656314 ATGAAAACGAACATGCGACTAATA 57.344 33.333 0.00 0.00 34.83 0.98
2132 2221 7.197703 TCTATATGAAAACGAACATGCGACTA 58.802 34.615 0.00 0.00 34.83 2.59
2173 2262 5.316167 TGTCTAGTGGCTTCATTGTTCATT 58.684 37.500 0.00 0.00 0.00 2.57
2297 2386 3.907927 CTCGACTAGCTCTTGTCCG 57.092 57.895 0.00 0.00 32.94 4.79
2310 2399 1.218230 GCCGGATGAATGAGCTCGAC 61.218 60.000 5.05 3.50 0.00 4.20
2318 2407 2.016961 CGTCAAGGCCGGATGAATG 58.983 57.895 5.05 0.00 0.00 2.67
2333 2422 3.833649 TATAACACCATGCCGCCCGTC 62.834 57.143 0.00 0.00 0.00 4.79
2336 2425 2.327228 GTATAACACCATGCCGCCC 58.673 57.895 0.00 0.00 0.00 6.13
2382 2471 0.251916 TGCCACAATAGAACCCCTCG 59.748 55.000 0.00 0.00 0.00 4.63
2400 2489 1.753930 TATGTCTTGGTGGCATGCTG 58.246 50.000 18.92 1.68 41.68 4.41
2417 2506 4.080695 AGCCTCTGACATGACACATGTTAT 60.081 41.667 16.58 0.00 31.52 1.89
2451 2540 3.714144 AGAGCCTCTAACAAAGGAGCTA 58.286 45.455 0.00 0.00 35.07 3.32
2452 2541 2.545810 AGAGCCTCTAACAAAGGAGCT 58.454 47.619 0.00 0.00 36.88 4.09
2456 2545 6.881602 ACTAATTGAAGAGCCTCTAACAAAGG 59.118 38.462 14.89 11.25 36.95 3.11
2464 2553 4.019860 TGCTGAACTAATTGAAGAGCCTCT 60.020 41.667 0.00 0.00 0.00 3.69
2474 2563 1.527793 GCGAGCGTGCTGAACTAATTG 60.528 52.381 0.00 0.00 0.00 2.32
2475 2564 0.721718 GCGAGCGTGCTGAACTAATT 59.278 50.000 0.00 0.00 0.00 1.40
2494 2583 5.215160 GGGCGATGTTTTTGATAAGCTATG 58.785 41.667 0.00 0.00 0.00 2.23
2495 2584 4.887071 TGGGCGATGTTTTTGATAAGCTAT 59.113 37.500 0.00 0.00 0.00 2.97
2496 2585 4.265893 TGGGCGATGTTTTTGATAAGCTA 58.734 39.130 0.00 0.00 0.00 3.32
2499 2588 5.059404 AGTTGGGCGATGTTTTTGATAAG 57.941 39.130 0.00 0.00 0.00 1.73
2506 2595 2.579410 AGGTAGTTGGGCGATGTTTT 57.421 45.000 0.00 0.00 0.00 2.43
2566 2656 5.221561 CCCAACATGATGAACCATGCATATT 60.222 40.000 4.25 0.00 45.79 1.28
2567 2657 4.282449 CCCAACATGATGAACCATGCATAT 59.718 41.667 4.25 0.00 45.79 1.78
2578 2668 2.030363 GCAACGTTTCCCAACATGATGA 60.030 45.455 4.25 0.00 32.54 2.92
2579 2669 2.288091 TGCAACGTTTCCCAACATGATG 60.288 45.455 0.00 0.00 32.54 3.07
2580 2670 1.959985 TGCAACGTTTCCCAACATGAT 59.040 42.857 0.00 0.00 32.54 2.45
2581 2671 1.393603 TGCAACGTTTCCCAACATGA 58.606 45.000 0.00 0.00 32.54 3.07
2582 2672 2.060284 CATGCAACGTTTCCCAACATG 58.940 47.619 0.00 2.69 32.54 3.21
2583 2673 1.000731 CCATGCAACGTTTCCCAACAT 59.999 47.619 0.00 0.00 32.54 2.71
2584 2674 0.387202 CCATGCAACGTTTCCCAACA 59.613 50.000 0.00 0.00 32.54 3.33
2585 2675 0.671251 TCCATGCAACGTTTCCCAAC 59.329 50.000 0.00 0.00 0.00 3.77
2586 2676 1.403814 TTCCATGCAACGTTTCCCAA 58.596 45.000 0.00 0.00 0.00 4.12
2587 2677 1.403814 TTTCCATGCAACGTTTCCCA 58.596 45.000 0.00 0.00 0.00 4.37
2588 2678 2.131972 GTTTTCCATGCAACGTTTCCC 58.868 47.619 0.00 0.00 0.00 3.97
2589 2679 2.815478 TGTTTTCCATGCAACGTTTCC 58.185 42.857 0.00 0.00 0.00 3.13
2590 2680 4.849111 TTTGTTTTCCATGCAACGTTTC 57.151 36.364 0.00 0.00 0.00 2.78
2591 2681 5.613358 TTTTTGTTTTCCATGCAACGTTT 57.387 30.435 0.00 0.00 0.00 3.60
2612 2702 6.428159 AGATCTTGCGTGTGAGTAGAATTTTT 59.572 34.615 0.00 0.00 0.00 1.94
2613 2703 5.934625 AGATCTTGCGTGTGAGTAGAATTTT 59.065 36.000 0.00 0.00 0.00 1.82
2614 2704 5.482908 AGATCTTGCGTGTGAGTAGAATTT 58.517 37.500 0.00 0.00 0.00 1.82
2615 2705 5.078411 AGATCTTGCGTGTGAGTAGAATT 57.922 39.130 0.00 0.00 0.00 2.17
2616 2706 4.727507 AGATCTTGCGTGTGAGTAGAAT 57.272 40.909 0.00 0.00 0.00 2.40
2617 2707 5.221067 GGATAGATCTTGCGTGTGAGTAGAA 60.221 44.000 0.00 0.00 0.00 2.10
2618 2708 4.276183 GGATAGATCTTGCGTGTGAGTAGA 59.724 45.833 0.00 0.00 0.00 2.59
2619 2709 4.036852 TGGATAGATCTTGCGTGTGAGTAG 59.963 45.833 0.00 0.00 0.00 2.57
2620 2710 3.951680 TGGATAGATCTTGCGTGTGAGTA 59.048 43.478 0.00 0.00 0.00 2.59
2621 2711 2.760650 TGGATAGATCTTGCGTGTGAGT 59.239 45.455 0.00 0.00 0.00 3.41
2622 2712 3.443099 TGGATAGATCTTGCGTGTGAG 57.557 47.619 0.00 0.00 0.00 3.51
2623 2713 4.827284 TCTATGGATAGATCTTGCGTGTGA 59.173 41.667 0.00 0.00 34.63 3.58
2624 2714 5.048434 TCTCTATGGATAGATCTTGCGTGTG 60.048 44.000 0.00 0.00 38.60 3.82
2625 2715 5.073428 TCTCTATGGATAGATCTTGCGTGT 58.927 41.667 0.00 0.00 38.60 4.49
2626 2716 5.635417 TCTCTATGGATAGATCTTGCGTG 57.365 43.478 0.00 0.00 38.60 5.34
2627 2717 5.394005 GCATCTCTATGGATAGATCTTGCGT 60.394 44.000 0.00 0.00 38.60 5.24
2628 2718 5.042593 GCATCTCTATGGATAGATCTTGCG 58.957 45.833 0.00 0.00 38.60 4.85
2629 2719 5.975282 TGCATCTCTATGGATAGATCTTGC 58.025 41.667 0.00 0.11 38.60 4.01
2637 2727 5.418840 TCGTTGCTATGCATCTCTATGGATA 59.581 40.000 0.19 0.00 41.85 2.59
2638 2728 4.221482 TCGTTGCTATGCATCTCTATGGAT 59.779 41.667 0.19 0.00 45.18 3.41
2639 2729 3.573967 TCGTTGCTATGCATCTCTATGGA 59.426 43.478 0.19 0.00 38.76 3.41
2640 2730 3.917988 TCGTTGCTATGCATCTCTATGG 58.082 45.455 0.19 0.00 38.76 2.74
2641 2731 4.802999 TCTCGTTGCTATGCATCTCTATG 58.197 43.478 0.19 0.00 38.76 2.23
2642 2732 4.082300 CCTCTCGTTGCTATGCATCTCTAT 60.082 45.833 0.19 0.00 38.76 1.98
2643 2733 3.254411 CCTCTCGTTGCTATGCATCTCTA 59.746 47.826 0.19 0.00 38.76 2.43
2644 2734 2.035704 CCTCTCGTTGCTATGCATCTCT 59.964 50.000 0.19 0.00 38.76 3.10
2645 2735 2.402305 CCTCTCGTTGCTATGCATCTC 58.598 52.381 0.19 0.00 38.76 2.75
2646 2736 1.069823 CCCTCTCGTTGCTATGCATCT 59.930 52.381 0.19 0.00 38.76 2.90
2647 2737 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
2648 2738 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
2649 2739 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
2650 2740 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
2651 2741 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
2652 2742 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2653 2743 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2654 2744 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
2655 2745 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2656 2746 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
2657 2747 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
2658 2748 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
2659 2749 0.322997 AGACACACTCTCCCCTCTCG 60.323 60.000 0.00 0.00 0.00 4.04
2660 2750 2.371306 GTAGACACACTCTCCCCTCTC 58.629 57.143 0.00 0.00 0.00 3.20
2661 2751 1.340211 CGTAGACACACTCTCCCCTCT 60.340 57.143 0.00 0.00 0.00 3.69
2662 2752 1.096416 CGTAGACACACTCTCCCCTC 58.904 60.000 0.00 0.00 0.00 4.30
2663 2753 0.404812 ACGTAGACACACTCTCCCCT 59.595 55.000 0.00 0.00 0.00 4.79
2664 2754 1.742268 GTACGTAGACACACTCTCCCC 59.258 57.143 0.00 0.00 0.00 4.81
2665 2755 1.742268 GGTACGTAGACACACTCTCCC 59.258 57.143 0.00 0.00 0.00 4.30
2666 2756 1.742268 GGGTACGTAGACACACTCTCC 59.258 57.143 0.00 0.00 0.00 3.71
2667 2757 2.677337 GAGGGTACGTAGACACACTCTC 59.323 54.545 10.55 4.79 41.06 3.20
2668 2758 2.709213 GAGGGTACGTAGACACACTCT 58.291 52.381 10.55 0.00 41.06 3.24
2669 2759 1.396301 CGAGGGTACGTAGACACACTC 59.604 57.143 8.17 8.17 40.93 3.51
2670 2760 1.271054 ACGAGGGTACGTAGACACACT 60.271 52.381 0.00 0.00 44.72 3.55
2671 2761 1.160137 ACGAGGGTACGTAGACACAC 58.840 55.000 0.00 0.00 44.72 3.82
2672 2762 2.760634 TACGAGGGTACGTAGACACA 57.239 50.000 0.00 0.00 44.72 3.72
2678 2768 4.433615 CTTACAGTCTACGAGGGTACGTA 58.566 47.826 0.00 0.00 44.72 3.57
2680 2770 2.031437 GCTTACAGTCTACGAGGGTACG 59.969 54.545 0.00 0.00 39.31 3.67
2681 2771 2.031437 CGCTTACAGTCTACGAGGGTAC 59.969 54.545 0.00 0.00 0.00 3.34
2682 2772 2.283298 CGCTTACAGTCTACGAGGGTA 58.717 52.381 0.00 0.00 0.00 3.69
2683 2773 1.093159 CGCTTACAGTCTACGAGGGT 58.907 55.000 0.00 0.00 0.00 4.34
2684 2774 0.381089 CCGCTTACAGTCTACGAGGG 59.619 60.000 0.00 0.00 0.00 4.30
2685 2775 1.376543 TCCGCTTACAGTCTACGAGG 58.623 55.000 0.00 0.00 0.00 4.63
2686 2776 2.791849 GCTTCCGCTTACAGTCTACGAG 60.792 54.545 0.00 0.00 0.00 4.18
2687 2777 1.131883 GCTTCCGCTTACAGTCTACGA 59.868 52.381 0.00 0.00 0.00 3.43
2688 2778 1.135489 TGCTTCCGCTTACAGTCTACG 60.135 52.381 0.00 0.00 36.97 3.51
2689 2779 2.649331 TGCTTCCGCTTACAGTCTAC 57.351 50.000 0.00 0.00 36.97 2.59
2690 2780 3.887621 AATGCTTCCGCTTACAGTCTA 57.112 42.857 0.00 0.00 36.97 2.59
2691 2781 2.744202 CAAATGCTTCCGCTTACAGTCT 59.256 45.455 0.00 0.00 36.97 3.24
2692 2782 2.742053 TCAAATGCTTCCGCTTACAGTC 59.258 45.455 0.00 0.00 36.97 3.51
2693 2783 2.484264 GTCAAATGCTTCCGCTTACAGT 59.516 45.455 0.00 0.00 36.97 3.55
2694 2784 2.483877 TGTCAAATGCTTCCGCTTACAG 59.516 45.455 0.00 0.00 36.97 2.74
2695 2785 2.499197 TGTCAAATGCTTCCGCTTACA 58.501 42.857 0.00 0.00 36.97 2.41
2696 2786 3.234386 GTTGTCAAATGCTTCCGCTTAC 58.766 45.455 0.00 0.00 36.97 2.34
2697 2787 2.881513 TGTTGTCAAATGCTTCCGCTTA 59.118 40.909 0.00 0.00 36.97 3.09
2698 2788 1.680735 TGTTGTCAAATGCTTCCGCTT 59.319 42.857 0.00 0.00 36.97 4.68
2699 2789 1.001378 GTGTTGTCAAATGCTTCCGCT 60.001 47.619 0.00 0.00 36.97 5.52
2700 2790 1.408422 GTGTTGTCAAATGCTTCCGC 58.592 50.000 0.00 0.00 0.00 5.54
2701 2791 1.662876 CCGTGTTGTCAAATGCTTCCG 60.663 52.381 0.00 0.00 0.00 4.30
2702 2792 1.336755 ACCGTGTTGTCAAATGCTTCC 59.663 47.619 0.00 0.00 0.00 3.46
2703 2793 2.774439 ACCGTGTTGTCAAATGCTTC 57.226 45.000 0.00 0.00 0.00 3.86
2704 2794 2.425312 TCAACCGTGTTGTCAAATGCTT 59.575 40.909 13.95 0.00 0.00 3.91
2705 2795 2.020720 TCAACCGTGTTGTCAAATGCT 58.979 42.857 13.95 0.00 0.00 3.79
2706 2796 2.483583 TCAACCGTGTTGTCAAATGC 57.516 45.000 13.95 0.00 0.00 3.56
2707 2797 3.963665 ACATCAACCGTGTTGTCAAATG 58.036 40.909 13.95 12.45 33.28 2.32
2708 2798 4.819630 ACTACATCAACCGTGTTGTCAAAT 59.180 37.500 13.95 1.52 38.39 2.32
2709 2799 4.193090 ACTACATCAACCGTGTTGTCAAA 58.807 39.130 13.95 0.00 38.39 2.69
2710 2800 3.799366 ACTACATCAACCGTGTTGTCAA 58.201 40.909 13.95 0.00 38.39 3.18
2711 2801 3.386486 GACTACATCAACCGTGTTGTCA 58.614 45.455 13.95 0.40 45.34 3.58
2712 2802 2.407361 CGACTACATCAACCGTGTTGTC 59.593 50.000 13.95 10.65 43.80 3.18
2713 2803 2.034939 TCGACTACATCAACCGTGTTGT 59.965 45.455 13.95 5.99 40.15 3.32
2714 2804 2.668250 TCGACTACATCAACCGTGTTG 58.332 47.619 9.65 9.65 0.00 3.33
2715 2805 3.054878 GTTCGACTACATCAACCGTGTT 58.945 45.455 0.00 0.00 0.00 3.32
2716 2806 2.295349 AGTTCGACTACATCAACCGTGT 59.705 45.455 0.00 0.00 0.00 4.49
2717 2807 2.942710 AGTTCGACTACATCAACCGTG 58.057 47.619 0.00 0.00 0.00 4.94
2718 2808 3.255149 AGAAGTTCGACTACATCAACCGT 59.745 43.478 0.00 0.00 0.00 4.83
2719 2809 3.834610 AGAAGTTCGACTACATCAACCG 58.165 45.455 0.00 0.00 0.00 4.44
2720 2810 5.765072 GAAGAAGTTCGACTACATCAACC 57.235 43.478 0.00 0.00 0.00 3.77
2733 2823 2.636519 GGTTGAAACGCGAAGAAGTTC 58.363 47.619 15.93 6.78 0.00 3.01
2734 2824 1.004292 CGGTTGAAACGCGAAGAAGTT 60.004 47.619 15.93 0.00 0.00 2.66
2735 2825 0.580104 CGGTTGAAACGCGAAGAAGT 59.420 50.000 15.93 0.00 0.00 3.01
2736 2826 0.856641 TCGGTTGAAACGCGAAGAAG 59.143 50.000 15.93 0.00 31.84 2.85
2737 2827 1.458064 GATCGGTTGAAACGCGAAGAA 59.542 47.619 15.93 0.00 36.03 2.52
2738 2828 1.065358 GATCGGTTGAAACGCGAAGA 58.935 50.000 15.93 0.00 36.03 2.87
2739 2829 0.246757 CGATCGGTTGAAACGCGAAG 60.247 55.000 15.93 0.00 36.03 3.79
2740 2830 0.663867 TCGATCGGTTGAAACGCGAA 60.664 50.000 15.93 0.00 36.03 4.70
2741 2831 1.068832 CTCGATCGGTTGAAACGCGA 61.069 55.000 15.93 1.00 36.54 5.87
2742 2832 1.340465 CTCGATCGGTTGAAACGCG 59.660 57.895 16.41 3.53 0.00 6.01
2743 2833 1.058903 GCTCGATCGGTTGAAACGC 59.941 57.895 16.41 2.03 0.00 4.84
2744 2834 0.093026 GTGCTCGATCGGTTGAAACG 59.907 55.000 16.41 0.00 0.00 3.60
2745 2835 0.442699 GGTGCTCGATCGGTTGAAAC 59.557 55.000 16.41 5.61 0.00 2.78
2746 2836 1.011968 CGGTGCTCGATCGGTTGAAA 61.012 55.000 16.41 0.00 42.43 2.69
2747 2837 1.445410 CGGTGCTCGATCGGTTGAA 60.445 57.895 16.41 0.00 42.43 2.69
2748 2838 2.180769 CGGTGCTCGATCGGTTGA 59.819 61.111 16.41 0.00 42.43 3.18
2749 2839 2.180769 TCGGTGCTCGATCGGTTG 59.819 61.111 16.41 7.26 43.74 3.77
2757 2847 2.872925 CCGTACGTTCGGTGCTCG 60.873 66.667 23.71 0.00 44.77 5.03
2764 2854 2.505557 GGAGGTGCCGTACGTTCG 60.506 66.667 15.21 7.68 0.00 3.95
2773 2863 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2774 2864 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
2775 2865 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
2776 2866 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2777 2867 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2778 2868 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2795 2885 1.872679 GGACGTCATCGAGCGGAAC 60.873 63.158 18.91 0.00 40.62 3.62
2796 2886 1.989966 GAGGACGTCATCGAGCGGAA 61.990 60.000 18.91 0.00 40.62 4.30
2797 2887 2.437895 AGGACGTCATCGAGCGGA 60.438 61.111 18.91 0.00 40.62 5.54
2798 2888 2.024871 GAGGACGTCATCGAGCGG 59.975 66.667 18.91 0.00 40.62 5.52
2799 2889 2.024871 GGAGGACGTCATCGAGCG 59.975 66.667 22.49 5.48 40.62 5.03
2800 2890 2.024871 CGGAGGACGTCATCGAGC 59.975 66.667 22.49 9.22 40.62 5.03
2801 2891 2.024871 GCGGAGGACGTCATCGAG 59.975 66.667 22.49 19.17 46.52 4.04
2808 2898 1.258445 ATCAAGAAGGCGGAGGACGT 61.258 55.000 0.00 0.00 46.52 4.34
2810 2900 0.179070 GGATCAAGAAGGCGGAGGAC 60.179 60.000 0.00 0.00 0.00 3.85
2811 2901 0.617535 TGGATCAAGAAGGCGGAGGA 60.618 55.000 0.00 0.00 0.00 3.71
2812 2902 0.179062 CTGGATCAAGAAGGCGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
2813 2903 0.813210 GCTGGATCAAGAAGGCGGAG 60.813 60.000 0.00 0.00 0.00 4.63
2814 2904 1.221840 GCTGGATCAAGAAGGCGGA 59.778 57.895 0.00 0.00 0.00 5.54
2815 2905 0.677731 TTGCTGGATCAAGAAGGCGG 60.678 55.000 0.00 0.00 0.00 6.13
2816 2906 0.731417 CTTGCTGGATCAAGAAGGCG 59.269 55.000 0.00 0.00 44.61 5.52
2817 2907 2.119801 TCTTGCTGGATCAAGAAGGC 57.880 50.000 0.00 0.00 46.56 4.35
2822 2912 1.699656 CGCCGTCTTGCTGGATCAAG 61.700 60.000 0.00 0.00 43.53 3.02
2823 2913 1.741401 CGCCGTCTTGCTGGATCAA 60.741 57.895 0.00 0.00 0.00 2.57
2824 2914 2.125552 CGCCGTCTTGCTGGATCA 60.126 61.111 0.00 0.00 0.00 2.92
2825 2915 1.880340 CTCGCCGTCTTGCTGGATC 60.880 63.158 0.00 0.00 0.00 3.36
2826 2916 2.185350 CTCGCCGTCTTGCTGGAT 59.815 61.111 0.00 0.00 0.00 3.41
2827 2917 4.069232 CCTCGCCGTCTTGCTGGA 62.069 66.667 0.00 0.00 0.00 3.86
2828 2918 2.890847 CTACCTCGCCGTCTTGCTGG 62.891 65.000 0.00 0.00 0.00 4.85
2829 2919 1.517257 CTACCTCGCCGTCTTGCTG 60.517 63.158 0.00 0.00 0.00 4.41
2830 2920 1.977544 ACTACCTCGCCGTCTTGCT 60.978 57.895 0.00 0.00 0.00 3.91
2831 2921 1.805945 CACTACCTCGCCGTCTTGC 60.806 63.158 0.00 0.00 0.00 4.01
2832 2922 1.153823 CCACTACCTCGCCGTCTTG 60.154 63.158 0.00 0.00 0.00 3.02
2833 2923 0.683504 ATCCACTACCTCGCCGTCTT 60.684 55.000 0.00 0.00 0.00 3.01
2834 2924 1.076923 ATCCACTACCTCGCCGTCT 60.077 57.895 0.00 0.00 0.00 4.18
2835 2925 1.065928 CATCCACTACCTCGCCGTC 59.934 63.158 0.00 0.00 0.00 4.79
2836 2926 1.379443 TCATCCACTACCTCGCCGT 60.379 57.895 0.00 0.00 0.00 5.68
2837 2927 1.360551 CTCATCCACTACCTCGCCG 59.639 63.158 0.00 0.00 0.00 6.46
2838 2928 0.824759 AACTCATCCACTACCTCGCC 59.175 55.000 0.00 0.00 0.00 5.54
2839 2929 2.211353 GAACTCATCCACTACCTCGC 57.789 55.000 0.00 0.00 0.00 5.03
2849 2939 2.109126 GTGCTGCCGGAACTCATCC 61.109 63.158 5.05 0.00 45.57 3.51
2850 2940 2.456119 CGTGCTGCCGGAACTCATC 61.456 63.158 5.05 0.00 0.00 2.92
2851 2941 2.434884 CGTGCTGCCGGAACTCAT 60.435 61.111 5.05 0.00 0.00 2.90
2852 2942 3.611674 TCGTGCTGCCGGAACTCA 61.612 61.111 5.05 0.00 0.00 3.41
2853 2943 3.112709 GTCGTGCTGCCGGAACTC 61.113 66.667 5.05 0.00 0.00 3.01
2870 2960 4.735132 ATCACCGTCACCACGCCG 62.735 66.667 0.00 0.00 45.29 6.46
2871 2961 3.118454 CATCACCGTCACCACGCC 61.118 66.667 0.00 0.00 45.29 5.68
2872 2962 3.118454 CCATCACCGTCACCACGC 61.118 66.667 0.00 0.00 45.29 5.34
2873 2963 2.027073 CACCATCACCGTCACCACG 61.027 63.158 0.00 0.00 46.29 4.94
2874 2964 0.250124 TTCACCATCACCGTCACCAC 60.250 55.000 0.00 0.00 0.00 4.16
2875 2965 0.034756 CTTCACCATCACCGTCACCA 59.965 55.000 0.00 0.00 0.00 4.17
2876 2966 1.298859 GCTTCACCATCACCGTCACC 61.299 60.000 0.00 0.00 0.00 4.02
2877 2967 0.320771 AGCTTCACCATCACCGTCAC 60.321 55.000 0.00 0.00 0.00 3.67
2878 2968 1.262417 TAGCTTCACCATCACCGTCA 58.738 50.000 0.00 0.00 0.00 4.35
2879 2969 2.101582 AGATAGCTTCACCATCACCGTC 59.898 50.000 0.00 0.00 0.00 4.79
2880 2970 2.101582 GAGATAGCTTCACCATCACCGT 59.898 50.000 0.00 0.00 0.00 4.83
2881 2971 2.546795 GGAGATAGCTTCACCATCACCG 60.547 54.545 0.00 0.00 35.34 4.94
2882 2972 2.224402 GGGAGATAGCTTCACCATCACC 60.224 54.545 0.00 0.00 36.86 4.02
2883 2973 2.224402 GGGGAGATAGCTTCACCATCAC 60.224 54.545 0.00 0.00 36.86 3.06
2884 2974 2.050144 GGGGAGATAGCTTCACCATCA 58.950 52.381 0.00 0.00 36.86 3.07
2885 2975 2.038295 CTGGGGAGATAGCTTCACCATC 59.962 54.545 8.33 0.00 36.86 3.51
2886 2976 2.053244 CTGGGGAGATAGCTTCACCAT 58.947 52.381 8.33 0.00 36.86 3.55
2887 2977 1.500474 CTGGGGAGATAGCTTCACCA 58.500 55.000 7.64 7.64 36.86 4.17
2888 2978 0.761802 CCTGGGGAGATAGCTTCACC 59.238 60.000 0.00 0.00 34.56 4.02
2889 2979 0.761802 CCCTGGGGAGATAGCTTCAC 59.238 60.000 4.27 0.00 37.50 3.18
2890 2980 1.056700 GCCCTGGGGAGATAGCTTCA 61.057 60.000 16.03 0.00 37.50 3.02
2891 2981 0.766288 AGCCCTGGGGAGATAGCTTC 60.766 60.000 16.03 0.00 37.50 3.86
2892 2982 0.327964 AAGCCCTGGGGAGATAGCTT 60.328 55.000 16.03 6.57 37.50 3.74
2893 2983 0.766288 GAAGCCCTGGGGAGATAGCT 60.766 60.000 16.03 0.00 37.50 3.32
2894 2984 1.056700 TGAAGCCCTGGGGAGATAGC 61.057 60.000 16.03 0.00 37.50 2.97
2895 2985 0.761802 GTGAAGCCCTGGGGAGATAG 59.238 60.000 16.03 0.00 37.50 2.08
2896 2986 0.694444 GGTGAAGCCCTGGGGAGATA 60.694 60.000 16.03 0.00 37.50 1.98
2897 2987 2.003548 GGTGAAGCCCTGGGGAGAT 61.004 63.158 16.03 0.00 37.50 2.75
2898 2988 1.821966 TAGGTGAAGCCCTGGGGAGA 61.822 60.000 16.03 0.00 38.26 3.71
2899 2989 0.914417 TTAGGTGAAGCCCTGGGGAG 60.914 60.000 16.03 0.00 38.26 4.30
2900 2990 0.914417 CTTAGGTGAAGCCCTGGGGA 60.914 60.000 16.03 0.00 38.26 4.81
2901 2991 1.609783 CTTAGGTGAAGCCCTGGGG 59.390 63.158 16.03 4.75 38.26 4.96
2909 2999 7.491372 TCATATTTTCGTAGTGCTTAGGTGAAG 59.509 37.037 0.00 0.00 38.30 3.02
2910 3000 7.277098 GTCATATTTTCGTAGTGCTTAGGTGAA 59.723 37.037 0.00 0.00 0.00 3.18
2911 3001 6.755141 GTCATATTTTCGTAGTGCTTAGGTGA 59.245 38.462 0.00 0.00 0.00 4.02
2912 3002 6.018994 GGTCATATTTTCGTAGTGCTTAGGTG 60.019 42.308 0.00 0.00 0.00 4.00
2913 3003 6.047231 GGTCATATTTTCGTAGTGCTTAGGT 58.953 40.000 0.00 0.00 0.00 3.08
2914 3004 5.175126 CGGTCATATTTTCGTAGTGCTTAGG 59.825 44.000 0.00 0.00 0.00 2.69
2915 3005 5.175126 CCGGTCATATTTTCGTAGTGCTTAG 59.825 44.000 0.00 0.00 0.00 2.18
2916 3006 5.045215 CCGGTCATATTTTCGTAGTGCTTA 58.955 41.667 0.00 0.00 0.00 3.09
2917 3007 3.869246 CCGGTCATATTTTCGTAGTGCTT 59.131 43.478 0.00 0.00 0.00 3.91
2918 3008 3.454375 CCGGTCATATTTTCGTAGTGCT 58.546 45.455 0.00 0.00 0.00 4.40
2919 3009 2.542595 CCCGGTCATATTTTCGTAGTGC 59.457 50.000 0.00 0.00 0.00 4.40
2920 3010 3.128349 CCCCGGTCATATTTTCGTAGTG 58.872 50.000 0.00 0.00 0.00 2.74
2921 3011 3.464111 CCCCGGTCATATTTTCGTAGT 57.536 47.619 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.