Multiple sequence alignment - TraesCS3D01G168000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G168000 chr3D 100.000 6283 0 0 1 6283 142482631 142476349 0.000000e+00 11603
1 TraesCS3D01G168000 chr3D 97.665 257 5 1 343 598 206620540 206620796 2.080000e-119 440
2 TraesCS3D01G168000 chr3D 97.233 253 7 0 343 595 144329994 144330246 4.500000e-116 429
3 TraesCS3D01G168000 chr3D 97.590 83 2 0 595 677 304580995 304580913 6.570000e-30 143
4 TraesCS3D01G168000 chr3D 95.506 89 3 1 595 683 469481311 469481224 2.360000e-29 141
5 TraesCS3D01G168000 chr3A 95.208 3339 117 18 2954 6283 161449459 161446155 0.000000e+00 5240
6 TraesCS3D01G168000 chr3A 92.443 2329 108 28 677 2959 161451842 161449536 0.000000e+00 3264
7 TraesCS3D01G168000 chr3A 94.509 346 11 6 1 342 161452183 161451842 1.550000e-145 527
8 TraesCS3D01G168000 chr3B 95.960 2822 96 11 3465 6276 204284543 204281730 0.000000e+00 4564
9 TraesCS3D01G168000 chr3B 94.084 2823 111 28 677 3468 204287422 204284625 0.000000e+00 4237
10 TraesCS3D01G168000 chr3B 96.784 342 5 2 1 342 204287757 204287422 3.290000e-157 566
11 TraesCS3D01G168000 chrUn 97.244 254 6 1 343 596 91678842 91679094 4.500000e-116 429
12 TraesCS3D01G168000 chrUn 74.863 366 54 25 1475 1813 322770293 322769939 1.420000e-26 132
13 TraesCS3D01G168000 chr5D 96.887 257 6 2 343 598 376126832 376127087 4.500000e-116 429
14 TraesCS3D01G168000 chr5D 97.590 83 2 0 595 677 56555510 56555428 6.570000e-30 143
15 TraesCS3D01G168000 chr5D 97.590 83 2 0 595 677 246228098 246228016 6.570000e-30 143
16 TraesCS3D01G168000 chr1B 96.887 257 7 1 343 598 203026060 203026316 4.500000e-116 429
17 TraesCS3D01G168000 chr7A 96.484 256 9 0 343 598 317005432 317005177 2.090000e-114 424
18 TraesCS3D01G168000 chr6D 96.498 257 7 2 343 598 193622931 193623186 2.090000e-114 424
19 TraesCS3D01G168000 chr6D 85.143 175 25 1 1463 1637 466238540 466238713 1.800000e-40 178
20 TraesCS3D01G168000 chr6D 96.512 86 3 0 592 677 376814680 376814765 6.570000e-30 143
21 TraesCS3D01G168000 chr4D 96.498 257 8 1 343 598 333454337 333454593 2.090000e-114 424
22 TraesCS3D01G168000 chr2D 96.498 257 8 1 343 598 157448443 157448699 2.090000e-114 424
23 TraesCS3D01G168000 chr2D 96.629 89 3 0 595 683 393583181 393583093 1.410000e-31 148
24 TraesCS3D01G168000 chr6B 96.552 87 2 1 595 680 676536183 676536269 6.570000e-30 143
25 TraesCS3D01G168000 chr6B 86.325 117 12 2 1687 1799 6815486 6815370 2.380000e-24 124
26 TraesCS3D01G168000 chr5A 94.505 91 4 1 595 685 444897960 444897871 8.490000e-29 139
27 TraesCS3D01G168000 chr1D 94.505 91 4 1 595 685 397213077 397213166 8.490000e-29 139
28 TraesCS3D01G168000 chr6A 82.258 124 18 2 1687 1806 2263611 2263488 3.100000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G168000 chr3D 142476349 142482631 6282 True 11603.000000 11603 100.000000 1 6283 1 chr3D.!!$R1 6282
1 TraesCS3D01G168000 chr3A 161446155 161452183 6028 True 3010.333333 5240 94.053333 1 6283 3 chr3A.!!$R1 6282
2 TraesCS3D01G168000 chr3B 204281730 204287757 6027 True 3122.333333 4564 95.609333 1 6276 3 chr3B.!!$R1 6275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 368 0.036732 GGAGTGTCATGCCCACTTGA 59.963 55.000 16.03 0.00 43.00 3.02 F
403 406 0.168128 GGAGCGTTTGATTTCACGGG 59.832 55.000 0.00 0.00 36.88 5.28 F
1341 1364 0.251297 CCCATCTCACACAGCCCAAA 60.251 55.000 0.00 0.00 0.00 3.28 F
1724 1756 1.446966 GAGCTTCTGCGTGGAGTCC 60.447 63.158 0.73 0.73 45.42 3.85 F
2598 2655 2.119495 TGACTGAGGCTCCTAATTCCC 58.881 52.381 12.86 0.00 0.00 3.97 F
3094 3237 0.038599 ATGATGCTGACCTGCCAACA 59.961 50.000 0.00 0.00 0.00 3.33 F
3682 3910 0.179000 AGGAACTGCTCCCGCATTAG 59.821 55.000 0.00 0.00 46.81 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 1462 0.336737 GGAGGAGGAGGAAGAGTGGA 59.663 60.000 0.00 0.0 0.00 4.02 R
1434 1463 0.689412 GGGAGGAGGAGGAAGAGTGG 60.689 65.000 0.00 0.0 0.00 4.00 R
2583 2640 1.755384 CGGGGGAATTAGGAGCCTC 59.245 63.158 0.00 0.0 0.00 4.70 R
2795 2852 2.238898 GGGGGCTCAAACAGTACACTAT 59.761 50.000 0.00 0.0 0.00 2.12 R
4514 4742 1.005340 CAGCCGTCTCAGCAATCTTC 58.995 55.000 0.00 0.0 0.00 2.87 R
4649 4877 0.391927 GCGGTACCAACATACCAGCA 60.392 55.000 13.54 0.0 44.36 4.41 R
5494 5724 0.752743 TTGCCAGCTTGTTCTGCACT 60.753 50.000 0.00 0.0 32.87 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
341 344 9.499479 CTAGATATCTGATGGCTACAAAATGTT 57.501 33.333 15.79 0.00 0.00 2.71
342 345 8.162878 AGATATCTGATGGCTACAAAATGTTG 57.837 34.615 3.89 0.00 40.84 3.33
343 346 7.994911 AGATATCTGATGGCTACAAAATGTTGA 59.005 33.333 3.89 0.00 38.20 3.18
344 347 8.701908 ATATCTGATGGCTACAAAATGTTGAT 57.298 30.769 1.62 0.00 38.20 2.57
345 348 6.839124 TCTGATGGCTACAAAATGTTGATT 57.161 33.333 1.62 0.00 38.20 2.57
346 349 6.623486 TCTGATGGCTACAAAATGTTGATTG 58.377 36.000 1.62 0.00 38.20 2.67
347 350 5.722263 TGATGGCTACAAAATGTTGATTGG 58.278 37.500 1.62 0.00 38.20 3.16
348 351 5.479724 TGATGGCTACAAAATGTTGATTGGA 59.520 36.000 1.62 0.00 38.20 3.53
349 352 5.389859 TGGCTACAAAATGTTGATTGGAG 57.610 39.130 1.62 0.00 39.92 3.86
350 353 4.832266 TGGCTACAAAATGTTGATTGGAGT 59.168 37.500 1.62 0.00 39.28 3.85
351 354 5.163513 GGCTACAAAATGTTGATTGGAGTG 58.836 41.667 1.62 0.00 39.28 3.51
352 355 5.278957 GGCTACAAAATGTTGATTGGAGTGT 60.279 40.000 1.62 0.00 39.28 3.55
353 356 5.858581 GCTACAAAATGTTGATTGGAGTGTC 59.141 40.000 1.62 0.00 39.28 3.67
354 357 5.850557 ACAAAATGTTGATTGGAGTGTCA 57.149 34.783 1.62 0.00 38.20 3.58
355 358 6.409524 ACAAAATGTTGATTGGAGTGTCAT 57.590 33.333 1.62 0.00 38.20 3.06
356 359 6.218019 ACAAAATGTTGATTGGAGTGTCATG 58.782 36.000 1.62 0.00 38.20 3.07
357 360 4.445452 AATGTTGATTGGAGTGTCATGC 57.555 40.909 0.00 0.00 0.00 4.06
358 361 2.161855 TGTTGATTGGAGTGTCATGCC 58.838 47.619 0.00 0.00 0.00 4.40
359 362 1.474077 GTTGATTGGAGTGTCATGCCC 59.526 52.381 0.00 0.00 0.00 5.36
360 363 0.697658 TGATTGGAGTGTCATGCCCA 59.302 50.000 0.00 0.00 0.00 5.36
361 364 1.098050 GATTGGAGTGTCATGCCCAC 58.902 55.000 7.12 7.12 0.00 4.61
362 365 0.700564 ATTGGAGTGTCATGCCCACT 59.299 50.000 15.18 15.18 45.52 4.00
363 366 0.478072 TTGGAGTGTCATGCCCACTT 59.522 50.000 16.03 4.09 43.00 3.16
364 367 0.250858 TGGAGTGTCATGCCCACTTG 60.251 55.000 16.03 0.00 43.00 3.16
365 368 0.036732 GGAGTGTCATGCCCACTTGA 59.963 55.000 16.03 0.00 43.00 3.02
366 369 1.545428 GGAGTGTCATGCCCACTTGAA 60.545 52.381 16.03 0.00 43.00 2.69
367 370 2.440409 GAGTGTCATGCCCACTTGAAT 58.560 47.619 16.03 0.00 43.00 2.57
368 371 2.421424 GAGTGTCATGCCCACTTGAATC 59.579 50.000 16.03 3.62 43.00 2.52
369 372 1.474077 GTGTCATGCCCACTTGAATCC 59.526 52.381 7.78 0.00 32.30 3.01
370 373 1.355381 TGTCATGCCCACTTGAATCCT 59.645 47.619 0.00 0.00 32.30 3.24
371 374 2.575735 TGTCATGCCCACTTGAATCCTA 59.424 45.455 0.00 0.00 32.30 2.94
372 375 3.202818 TGTCATGCCCACTTGAATCCTAT 59.797 43.478 0.00 0.00 32.30 2.57
373 376 4.411869 TGTCATGCCCACTTGAATCCTATA 59.588 41.667 0.00 0.00 32.30 1.31
374 377 4.999950 GTCATGCCCACTTGAATCCTATAG 59.000 45.833 0.00 0.00 32.30 1.31
375 378 4.042062 TCATGCCCACTTGAATCCTATAGG 59.958 45.833 13.07 13.07 0.00 2.57
389 392 3.764434 TCCTATAGGATTAGCAAGGAGCG 59.236 47.826 18.00 0.00 43.89 5.03
390 393 3.511934 CCTATAGGATTAGCAAGGAGCGT 59.488 47.826 14.11 0.00 43.24 5.07
391 394 4.021016 CCTATAGGATTAGCAAGGAGCGTT 60.021 45.833 14.11 0.00 43.24 4.84
392 395 5.511545 CCTATAGGATTAGCAAGGAGCGTTT 60.512 44.000 14.11 0.00 43.24 3.60
393 396 7.506111 CCTATAGGATTAGCAAGGAGCGTTTG 61.506 46.154 14.11 0.00 43.24 2.93
394 397 9.564474 CCTATAGGATTAGCAAGGAGCGTTTGA 62.564 44.444 14.11 0.00 43.24 2.69
399 402 2.704725 GCAAGGAGCGTTTGATTTCA 57.295 45.000 2.68 0.00 0.00 2.69
400 403 2.319472 GCAAGGAGCGTTTGATTTCAC 58.681 47.619 2.68 0.00 0.00 3.18
401 404 2.574322 CAAGGAGCGTTTGATTTCACG 58.426 47.619 0.00 0.00 39.49 4.35
402 405 1.156736 AGGAGCGTTTGATTTCACGG 58.843 50.000 0.00 0.00 36.88 4.94
403 406 0.168128 GGAGCGTTTGATTTCACGGG 59.832 55.000 0.00 0.00 36.88 5.28
404 407 1.153353 GAGCGTTTGATTTCACGGGA 58.847 50.000 0.00 0.00 36.88 5.14
405 408 1.533731 GAGCGTTTGATTTCACGGGAA 59.466 47.619 0.00 0.00 36.88 3.97
406 409 1.950909 AGCGTTTGATTTCACGGGAAA 59.049 42.857 16.48 16.48 46.36 3.13
407 410 2.359531 AGCGTTTGATTTCACGGGAAAA 59.640 40.909 18.20 0.00 45.52 2.29
408 411 2.724174 GCGTTTGATTTCACGGGAAAAG 59.276 45.455 18.20 5.92 45.52 2.27
409 412 2.724174 CGTTTGATTTCACGGGAAAAGC 59.276 45.455 18.20 12.74 45.52 3.51
410 413 3.712187 GTTTGATTTCACGGGAAAAGCA 58.288 40.909 18.20 15.23 45.52 3.91
411 414 4.116238 GTTTGATTTCACGGGAAAAGCAA 58.884 39.130 18.20 19.92 45.52 3.91
412 415 4.392921 TTGATTTCACGGGAAAAGCAAA 57.607 36.364 18.20 6.51 45.52 3.68
413 416 3.976169 TGATTTCACGGGAAAAGCAAAG 58.024 40.909 18.20 0.00 45.52 2.77
414 417 2.880963 TTTCACGGGAAAAGCAAAGG 57.119 45.000 11.17 0.00 39.96 3.11
415 418 2.060050 TTCACGGGAAAAGCAAAGGA 57.940 45.000 0.00 0.00 0.00 3.36
416 419 2.060050 TCACGGGAAAAGCAAAGGAA 57.940 45.000 0.00 0.00 0.00 3.36
417 420 2.593026 TCACGGGAAAAGCAAAGGAAT 58.407 42.857 0.00 0.00 0.00 3.01
418 421 2.962421 TCACGGGAAAAGCAAAGGAATT 59.038 40.909 0.00 0.00 0.00 2.17
419 422 3.059166 CACGGGAAAAGCAAAGGAATTG 58.941 45.455 0.00 0.00 42.21 2.32
420 423 2.698274 ACGGGAAAAGCAAAGGAATTGT 59.302 40.909 0.00 0.00 41.32 2.71
421 424 3.892588 ACGGGAAAAGCAAAGGAATTGTA 59.107 39.130 0.00 0.00 41.32 2.41
422 425 4.342665 ACGGGAAAAGCAAAGGAATTGTAA 59.657 37.500 0.00 0.00 41.32 2.41
423 426 5.163395 ACGGGAAAAGCAAAGGAATTGTAAA 60.163 36.000 0.00 0.00 41.32 2.01
424 427 5.755861 CGGGAAAAGCAAAGGAATTGTAAAA 59.244 36.000 0.00 0.00 41.32 1.52
425 428 6.258947 CGGGAAAAGCAAAGGAATTGTAAAAA 59.741 34.615 0.00 0.00 41.32 1.94
426 429 7.518211 CGGGAAAAGCAAAGGAATTGTAAAAAG 60.518 37.037 0.00 0.00 41.32 2.27
427 430 7.497579 GGGAAAAGCAAAGGAATTGTAAAAAGA 59.502 33.333 0.00 0.00 41.32 2.52
428 431 8.551205 GGAAAAGCAAAGGAATTGTAAAAAGAG 58.449 33.333 0.00 0.00 41.32 2.85
429 432 8.437360 AAAAGCAAAGGAATTGTAAAAAGAGG 57.563 30.769 0.00 0.00 41.32 3.69
430 433 6.731292 AGCAAAGGAATTGTAAAAAGAGGT 57.269 33.333 0.00 0.00 41.32 3.85
431 434 7.124573 AGCAAAGGAATTGTAAAAAGAGGTT 57.875 32.000 0.00 0.00 41.32 3.50
432 435 8.245195 AGCAAAGGAATTGTAAAAAGAGGTTA 57.755 30.769 0.00 0.00 41.32 2.85
433 436 8.360390 AGCAAAGGAATTGTAAAAAGAGGTTAG 58.640 33.333 0.00 0.00 41.32 2.34
434 437 8.357402 GCAAAGGAATTGTAAAAAGAGGTTAGA 58.643 33.333 0.00 0.00 41.32 2.10
438 441 9.025041 AGGAATTGTAAAAAGAGGTTAGAATGG 57.975 33.333 0.00 0.00 28.18 3.16
439 442 9.020731 GGAATTGTAAAAAGAGGTTAGAATGGA 57.979 33.333 0.00 0.00 28.18 3.41
442 445 8.934023 TTGTAAAAAGAGGTTAGAATGGATGT 57.066 30.769 0.00 0.00 0.00 3.06
443 446 8.934023 TGTAAAAAGAGGTTAGAATGGATGTT 57.066 30.769 0.00 0.00 0.00 2.71
447 450 9.981460 AAAAAGAGGTTAGAATGGATGTTAGAT 57.019 29.630 0.00 0.00 0.00 1.98
448 451 9.981460 AAAAGAGGTTAGAATGGATGTTAGATT 57.019 29.630 0.00 0.00 0.00 2.40
449 452 9.981460 AAAGAGGTTAGAATGGATGTTAGATTT 57.019 29.630 0.00 0.00 0.00 2.17
450 453 9.620259 AAGAGGTTAGAATGGATGTTAGATTTC 57.380 33.333 0.00 0.00 0.00 2.17
451 454 8.214364 AGAGGTTAGAATGGATGTTAGATTTCC 58.786 37.037 0.00 0.00 0.00 3.13
452 455 8.107196 AGGTTAGAATGGATGTTAGATTTCCT 57.893 34.615 0.00 0.00 0.00 3.36
453 456 9.225682 AGGTTAGAATGGATGTTAGATTTCCTA 57.774 33.333 0.00 0.00 0.00 2.94
472 475 8.698973 TTTCCTATGAAATGTGGTACAAAAGA 57.301 30.769 0.00 0.00 36.20 2.52
473 476 8.877864 TTCCTATGAAATGTGGTACAAAAGAT 57.122 30.769 0.00 0.00 44.16 2.40
474 477 8.877864 TCCTATGAAATGTGGTACAAAAGATT 57.122 30.769 0.00 0.00 44.16 2.40
475 478 8.956426 TCCTATGAAATGTGGTACAAAAGATTC 58.044 33.333 0.00 0.00 44.16 2.52
476 479 8.190784 CCTATGAAATGTGGTACAAAAGATTCC 58.809 37.037 0.00 0.00 44.16 3.01
477 480 6.968263 TGAAATGTGGTACAAAAGATTCCA 57.032 33.333 0.00 0.00 44.16 3.53
478 481 7.537596 TGAAATGTGGTACAAAAGATTCCAT 57.462 32.000 0.00 0.00 44.16 3.41
479 482 7.961351 TGAAATGTGGTACAAAAGATTCCATT 58.039 30.769 0.00 0.00 44.16 3.16
480 483 7.871973 TGAAATGTGGTACAAAAGATTCCATTG 59.128 33.333 0.00 0.00 44.16 2.82
481 484 5.720371 TGTGGTACAAAAGATTCCATTGG 57.280 39.130 0.00 0.00 44.16 3.16
482 485 5.389520 TGTGGTACAAAAGATTCCATTGGA 58.610 37.500 0.00 0.00 44.16 3.53
483 486 5.835819 TGTGGTACAAAAGATTCCATTGGAA 59.164 36.000 20.09 20.09 43.81 3.53
484 487 6.325028 TGTGGTACAAAAGATTCCATTGGAAA 59.675 34.615 21.52 6.17 43.15 3.13
485 488 7.147655 TGTGGTACAAAAGATTCCATTGGAAAA 60.148 33.333 21.52 0.44 43.15 2.29
486 489 7.713073 GTGGTACAAAAGATTCCATTGGAAAAA 59.287 33.333 21.52 0.00 43.15 1.94
487 490 8.435982 TGGTACAAAAGATTCCATTGGAAAAAT 58.564 29.630 21.52 5.98 39.85 1.82
488 491 9.283768 GGTACAAAAGATTCCATTGGAAAAATT 57.716 29.630 21.52 13.26 45.41 1.82
490 493 8.394971 ACAAAAGATTCCATTGGAAAAATTCC 57.605 30.769 21.52 2.12 45.41 3.01
505 508 7.445121 GGAAAAATTCCTATGGGATTCAATCC 58.555 38.462 8.06 8.06 46.57 3.01
506 509 7.290948 GGAAAAATTCCTATGGGATTCAATCCT 59.709 37.037 16.37 0.00 46.41 3.24
522 525 8.827832 ATTCAATCCTATGAATCAAAGGACAA 57.172 30.769 0.00 0.00 44.64 3.18
523 526 8.648698 TTCAATCCTATGAATCAAAGGACAAA 57.351 30.769 0.00 0.00 42.08 2.83
524 527 8.055279 TCAATCCTATGAATCAAAGGACAAAC 57.945 34.615 0.00 0.00 42.08 2.93
525 528 6.683974 ATCCTATGAATCAAAGGACAAACG 57.316 37.500 0.00 0.00 42.08 3.60
526 529 5.556915 TCCTATGAATCAAAGGACAAACGT 58.443 37.500 0.00 0.00 34.46 3.99
527 530 6.703319 TCCTATGAATCAAAGGACAAACGTA 58.297 36.000 0.00 0.00 34.46 3.57
528 531 6.816640 TCCTATGAATCAAAGGACAAACGTAG 59.183 38.462 0.00 0.00 34.46 3.51
529 532 5.880054 ATGAATCAAAGGACAAACGTAGG 57.120 39.130 0.00 0.00 0.00 3.18
530 533 4.963373 TGAATCAAAGGACAAACGTAGGA 58.037 39.130 0.00 0.00 0.00 2.94
531 534 5.369833 TGAATCAAAGGACAAACGTAGGAA 58.630 37.500 0.00 0.00 0.00 3.36
532 535 5.823570 TGAATCAAAGGACAAACGTAGGAAA 59.176 36.000 0.00 0.00 0.00 3.13
533 536 6.319152 TGAATCAAAGGACAAACGTAGGAAAA 59.681 34.615 0.00 0.00 0.00 2.29
534 537 6.894339 ATCAAAGGACAAACGTAGGAAAAT 57.106 33.333 0.00 0.00 0.00 1.82
535 538 6.702716 TCAAAGGACAAACGTAGGAAAATT 57.297 33.333 0.00 0.00 0.00 1.82
536 539 7.102847 TCAAAGGACAAACGTAGGAAAATTT 57.897 32.000 0.00 0.00 0.00 1.82
537 540 7.548967 TCAAAGGACAAACGTAGGAAAATTTT 58.451 30.769 2.28 2.28 0.00 1.82
538 541 7.703197 TCAAAGGACAAACGTAGGAAAATTTTC 59.297 33.333 20.51 20.51 36.46 2.29
539 542 6.702716 AGGACAAACGTAGGAAAATTTTCA 57.297 33.333 27.53 9.63 38.92 2.69
540 543 7.102847 AGGACAAACGTAGGAAAATTTTCAA 57.897 32.000 27.53 15.09 38.92 2.69
541 544 7.548967 AGGACAAACGTAGGAAAATTTTCAAA 58.451 30.769 27.53 14.78 38.92 2.69
542 545 7.704899 AGGACAAACGTAGGAAAATTTTCAAAG 59.295 33.333 27.53 19.65 38.92 2.77
543 546 7.042992 GGACAAACGTAGGAAAATTTTCAAAGG 60.043 37.037 27.53 21.34 38.92 3.11
544 547 7.548967 ACAAACGTAGGAAAATTTTCAAAGGA 58.451 30.769 27.53 8.74 38.92 3.36
545 548 8.201464 ACAAACGTAGGAAAATTTTCAAAGGAT 58.799 29.630 27.53 14.30 38.92 3.24
546 549 9.040939 CAAACGTAGGAAAATTTTCAAAGGATT 57.959 29.630 27.53 18.08 38.92 3.01
547 550 9.607988 AAACGTAGGAAAATTTTCAAAGGATTT 57.392 25.926 27.53 17.78 40.26 2.17
548 551 8.812147 ACGTAGGAAAATTTTCAAAGGATTTC 57.188 30.769 27.53 10.57 35.03 2.17
549 552 8.417884 ACGTAGGAAAATTTTCAAAGGATTTCA 58.582 29.630 27.53 2.40 35.03 2.69
550 553 9.255304 CGTAGGAAAATTTTCAAAGGATTTCAA 57.745 29.630 27.53 1.48 35.03 2.69
553 556 9.288576 AGGAAAATTTTCAAAGGATTTCAATCC 57.711 29.630 27.53 10.23 45.15 3.01
571 574 9.989296 TTTCAATCCTCCAAAAATCCTATAGAA 57.011 29.630 0.00 0.00 0.00 2.10
575 578 9.593565 AATCCTCCAAAAATCCTATAGAATTCC 57.406 33.333 0.00 0.00 0.00 3.01
576 579 7.526918 TCCTCCAAAAATCCTATAGAATTCCC 58.473 38.462 0.00 0.00 0.00 3.97
577 580 7.353595 TCCTCCAAAAATCCTATAGAATTCCCT 59.646 37.037 0.00 0.00 0.00 4.20
578 581 8.007153 CCTCCAAAAATCCTATAGAATTCCCTT 58.993 37.037 0.00 0.00 0.00 3.95
579 582 8.766994 TCCAAAAATCCTATAGAATTCCCTTG 57.233 34.615 0.00 0.00 0.00 3.61
580 583 8.565239 TCCAAAAATCCTATAGAATTCCCTTGA 58.435 33.333 0.00 0.00 0.00 3.02
581 584 9.200817 CCAAAAATCCTATAGAATTCCCTTGAA 57.799 33.333 0.00 0.00 34.33 2.69
587 590 9.804977 ATCCTATAGAATTCCCTTGAATCAAAG 57.195 33.333 0.00 0.00 40.34 2.77
588 591 8.220559 TCCTATAGAATTCCCTTGAATCAAAGG 58.779 37.037 4.27 4.27 45.48 3.11
597 600 3.549794 CTTGAATCAAAGGAGCCCTAGG 58.450 50.000 0.06 0.06 31.13 3.02
598 601 2.845659 TGAATCAAAGGAGCCCTAGGA 58.154 47.619 11.48 0.00 31.13 2.94
599 602 3.189606 TGAATCAAAGGAGCCCTAGGAA 58.810 45.455 11.48 0.00 31.13 3.36
600 603 3.788142 TGAATCAAAGGAGCCCTAGGAAT 59.212 43.478 11.48 0.00 31.13 3.01
601 604 4.230502 TGAATCAAAGGAGCCCTAGGAATT 59.769 41.667 11.48 0.00 31.13 2.17
602 605 3.652057 TCAAAGGAGCCCTAGGAATTG 57.348 47.619 11.48 6.14 31.13 2.32
603 606 3.189606 TCAAAGGAGCCCTAGGAATTGA 58.810 45.455 11.48 8.32 31.13 2.57
604 607 3.200825 TCAAAGGAGCCCTAGGAATTGAG 59.799 47.826 11.48 0.00 31.13 3.02
605 608 2.877154 AGGAGCCCTAGGAATTGAGA 57.123 50.000 11.48 0.00 28.47 3.27
606 609 3.359110 AGGAGCCCTAGGAATTGAGAT 57.641 47.619 11.48 0.00 28.47 2.75
607 610 2.978278 AGGAGCCCTAGGAATTGAGATG 59.022 50.000 11.48 0.00 28.47 2.90
608 611 2.039613 GGAGCCCTAGGAATTGAGATGG 59.960 54.545 11.48 0.00 0.00 3.51
609 612 2.975489 GAGCCCTAGGAATTGAGATGGA 59.025 50.000 11.48 0.00 0.00 3.41
610 613 3.586618 GAGCCCTAGGAATTGAGATGGAT 59.413 47.826 11.48 0.00 0.00 3.41
611 614 3.330110 AGCCCTAGGAATTGAGATGGATG 59.670 47.826 11.48 0.00 0.00 3.51
612 615 3.073650 GCCCTAGGAATTGAGATGGATGT 59.926 47.826 11.48 0.00 0.00 3.06
613 616 4.805609 GCCCTAGGAATTGAGATGGATGTC 60.806 50.000 11.48 0.00 0.00 3.06
614 617 4.349048 CCCTAGGAATTGAGATGGATGTCA 59.651 45.833 11.48 0.00 0.00 3.58
615 618 5.013913 CCCTAGGAATTGAGATGGATGTCAT 59.986 44.000 11.48 0.00 39.13 3.06
625 628 4.686191 GATGGATGTCATCTCACTTCCT 57.314 45.455 12.54 0.00 46.59 3.36
626 629 5.798125 GATGGATGTCATCTCACTTCCTA 57.202 43.478 12.54 0.00 46.59 2.94
627 630 6.357579 GATGGATGTCATCTCACTTCCTAT 57.642 41.667 12.54 0.00 46.59 2.57
628 631 5.541953 TGGATGTCATCTCACTTCCTATG 57.458 43.478 12.54 0.00 40.02 2.23
629 632 5.211201 TGGATGTCATCTCACTTCCTATGA 58.789 41.667 12.54 0.00 40.02 2.15
630 633 5.842874 TGGATGTCATCTCACTTCCTATGAT 59.157 40.000 12.54 0.00 40.02 2.45
631 634 6.328410 TGGATGTCATCTCACTTCCTATGATT 59.672 38.462 12.54 0.00 40.02 2.57
632 635 7.147426 TGGATGTCATCTCACTTCCTATGATTT 60.147 37.037 12.54 0.00 40.02 2.17
633 636 7.718753 GGATGTCATCTCACTTCCTATGATTTT 59.281 37.037 12.54 0.00 37.54 1.82
634 637 8.674263 ATGTCATCTCACTTCCTATGATTTTC 57.326 34.615 0.00 0.00 31.49 2.29
635 638 7.855375 TGTCATCTCACTTCCTATGATTTTCT 58.145 34.615 0.00 0.00 31.49 2.52
636 639 8.324306 TGTCATCTCACTTCCTATGATTTTCTT 58.676 33.333 0.00 0.00 31.49 2.52
637 640 9.823647 GTCATCTCACTTCCTATGATTTTCTTA 57.176 33.333 0.00 0.00 31.49 2.10
641 644 9.838339 TCTCACTTCCTATGATTTTCTTATTCC 57.162 33.333 0.00 0.00 0.00 3.01
642 645 9.844257 CTCACTTCCTATGATTTTCTTATTCCT 57.156 33.333 0.00 0.00 0.00 3.36
670 673 8.539117 AAAATTCCTATCCTATGAACCAAAGG 57.461 34.615 0.00 0.00 0.00 3.11
671 674 7.465900 AATTCCTATCCTATGAACCAAAGGA 57.534 36.000 0.00 0.00 43.38 3.36
672 675 6.500589 TTCCTATCCTATGAACCAAAGGAG 57.499 41.667 0.00 0.00 42.53 3.69
673 676 4.907875 TCCTATCCTATGAACCAAAGGAGG 59.092 45.833 0.00 0.00 42.53 4.30
674 677 3.584733 ATCCTATGAACCAAAGGAGGC 57.415 47.619 0.00 0.00 42.53 4.70
675 678 1.564348 TCCTATGAACCAAAGGAGGCC 59.436 52.381 0.00 0.00 34.46 5.19
721 724 2.983296 AGGGGAACATAGCTCTAGCAT 58.017 47.619 4.54 0.00 45.16 3.79
748 754 4.820897 GGATCAATTTGACCCCTCAAAAC 58.179 43.478 0.00 0.00 46.99 2.43
777 783 5.333111 CCACCGTTTTTGTTTTCGTTTTCAA 60.333 36.000 0.00 0.00 0.00 2.69
793 799 1.643310 TCAATTGAAAGGGGGCCTTG 58.357 50.000 5.45 0.00 43.92 3.61
795 801 1.200760 AATTGAAAGGGGGCCTTGCC 61.201 55.000 0.84 0.00 43.92 4.52
809 818 3.251004 GGCCTTGCCGATTTAACTAGATG 59.749 47.826 0.00 0.00 39.62 2.90
837 846 9.578576 AATGATAGTATTACCAACATCTGCAAT 57.421 29.630 0.00 0.00 0.00 3.56
860 869 4.539152 GCAAACACACTCCATGCG 57.461 55.556 0.00 0.00 0.00 4.73
861 870 1.730547 GCAAACACACTCCATGCGC 60.731 57.895 0.00 0.00 0.00 6.09
896 905 5.652891 TCTCGCTTCTTATCCTACCATATCC 59.347 44.000 0.00 0.00 0.00 2.59
897 906 5.580998 TCGCTTCTTATCCTACCATATCCT 58.419 41.667 0.00 0.00 0.00 3.24
898 907 6.728411 TCGCTTCTTATCCTACCATATCCTA 58.272 40.000 0.00 0.00 0.00 2.94
899 908 6.602406 TCGCTTCTTATCCTACCATATCCTAC 59.398 42.308 0.00 0.00 0.00 3.18
900 909 6.377429 CGCTTCTTATCCTACCATATCCTACA 59.623 42.308 0.00 0.00 0.00 2.74
901 910 7.548967 GCTTCTTATCCTACCATATCCTACAC 58.451 42.308 0.00 0.00 0.00 2.90
909 918 8.228353 TCCTACCATATCCTACACTACAGTAT 57.772 38.462 0.00 0.00 0.00 2.12
989 1006 7.915508 TCAATAGAAATTACGAATGCAACGAT 58.084 30.769 20.22 9.32 34.70 3.73
1066 1083 1.573108 ATCACCTTCACCCTCATCGT 58.427 50.000 0.00 0.00 0.00 3.73
1074 1091 3.770040 CCCTCATCGTGACCGCCA 61.770 66.667 0.00 0.00 0.00 5.69
1140 1157 2.989840 CGATGAATCCGTAGATGAAGGC 59.010 50.000 0.00 0.00 31.29 4.35
1234 1254 2.488347 CGAGGGGAAACAAAAGGGAGAA 60.488 50.000 0.00 0.00 0.00 2.87
1235 1255 3.157881 GAGGGGAAACAAAAGGGAGAAG 58.842 50.000 0.00 0.00 0.00 2.85
1236 1256 2.789399 AGGGGAAACAAAAGGGAGAAGA 59.211 45.455 0.00 0.00 0.00 2.87
1239 1259 4.470602 GGGAAACAAAAGGGAGAAGAGAA 58.529 43.478 0.00 0.00 0.00 2.87
1240 1260 4.520874 GGGAAACAAAAGGGAGAAGAGAAG 59.479 45.833 0.00 0.00 0.00 2.85
1241 1261 4.520874 GGAAACAAAAGGGAGAAGAGAAGG 59.479 45.833 0.00 0.00 0.00 3.46
1242 1262 5.377478 GAAACAAAAGGGAGAAGAGAAGGA 58.623 41.667 0.00 0.00 0.00 3.36
1243 1263 5.590976 AACAAAAGGGAGAAGAGAAGGAT 57.409 39.130 0.00 0.00 0.00 3.24
1244 1264 4.916183 ACAAAAGGGAGAAGAGAAGGATG 58.084 43.478 0.00 0.00 0.00 3.51
1246 1266 2.566708 AGGGAGAAGAGAAGGATGCT 57.433 50.000 0.00 0.00 0.00 3.79
1247 1267 2.844369 AGGGAGAAGAGAAGGATGCTT 58.156 47.619 0.00 0.00 0.00 3.91
1248 1268 2.771372 AGGGAGAAGAGAAGGATGCTTC 59.229 50.000 18.49 18.49 38.58 3.86
1249 1269 2.482839 GGGAGAAGAGAAGGATGCTTCG 60.483 54.545 19.75 0.00 42.07 3.79
1250 1270 2.428890 GGAGAAGAGAAGGATGCTTCGA 59.571 50.000 19.75 0.00 42.07 3.71
1252 1272 2.430332 AGAAGAGAAGGATGCTTCGAGG 59.570 50.000 19.75 0.00 42.07 4.63
1253 1273 1.859302 AGAGAAGGATGCTTCGAGGT 58.141 50.000 19.75 3.82 38.31 3.85
1254 1274 3.019799 AGAGAAGGATGCTTCGAGGTA 57.980 47.619 19.75 0.00 38.31 3.08
1309 1332 1.910671 TGGGCTACCCTCAACGTTTAT 59.089 47.619 0.00 0.00 45.70 1.40
1316 1339 1.006832 CCTCAACGTTTATGAGCCCG 58.993 55.000 9.75 0.00 42.36 6.13
1341 1364 0.251297 CCCATCTCACACAGCCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
1361 1384 3.356529 AAAGAAATGGACCGAGCAGAT 57.643 42.857 0.00 0.00 0.00 2.90
1399 1428 2.650322 TGGTTCCTTCTGTTTGTGACC 58.350 47.619 0.00 0.00 0.00 4.02
1421 1450 3.093278 CGCAAGCTAGCCGGAAAG 58.907 61.111 12.13 1.46 0.00 2.62
1423 1452 3.093278 CAAGCTAGCCGGAAAGCG 58.907 61.111 19.18 6.04 43.63 4.68
1424 1453 2.125106 AAGCTAGCCGGAAAGCGG 60.125 61.111 19.18 0.00 43.63 5.52
1425 1454 2.656069 AAGCTAGCCGGAAAGCGGA 61.656 57.895 19.18 0.00 43.63 5.54
1426 1455 2.125269 GCTAGCCGGAAAGCGGAA 60.125 61.111 5.05 0.00 38.01 4.30
1427 1456 1.743995 GCTAGCCGGAAAGCGGAAA 60.744 57.895 5.05 0.00 38.01 3.13
1439 1468 4.573162 CGGAAACCGTCTCCACTC 57.427 61.111 1.80 0.00 42.73 3.51
1440 1469 1.965219 CGGAAACCGTCTCCACTCT 59.035 57.895 1.80 0.00 42.73 3.24
1671 1703 6.355397 CAGATGTGGACTGATGATTGTAAC 57.645 41.667 0.00 0.00 37.54 2.50
1724 1756 1.446966 GAGCTTCTGCGTGGAGTCC 60.447 63.158 0.73 0.73 45.42 3.85
1918 1951 6.795114 GTGTTACGGTGTAATTCAGACAAATG 59.205 38.462 0.00 0.00 0.00 2.32
2023 2077 3.346315 TCCCAGTGTGCATAAGAACATG 58.654 45.455 0.00 0.00 35.24 3.21
2388 2445 7.691213 TGTTATGTCCCTTACAATCTTAACCA 58.309 34.615 0.00 0.00 42.70 3.67
2439 2496 2.258013 TGCTGCCGTGCCAACTTAC 61.258 57.895 0.00 0.00 0.00 2.34
2493 2550 4.525100 TCCCTACACCTTTTAAAACCATGC 59.475 41.667 0.00 0.00 0.00 4.06
2583 2640 7.162082 AGGATTTCCTGTAAACTTAGTGACTG 58.838 38.462 0.00 0.00 46.55 3.51
2598 2655 2.119495 TGACTGAGGCTCCTAATTCCC 58.881 52.381 12.86 0.00 0.00 3.97
2930 2989 7.080353 TCGTTCATATCGTAGAGAAACTGAA 57.920 36.000 0.00 0.00 43.63 3.02
3041 3184 8.729529 ATTCGTATAACTATCGTGATGAGTTG 57.270 34.615 11.56 0.00 35.17 3.16
3094 3237 0.038599 ATGATGCTGACCTGCCAACA 59.961 50.000 0.00 0.00 0.00 3.33
3330 3473 9.294030 CAAAATGAATACTATGCTTGACCTTTC 57.706 33.333 0.00 0.00 0.00 2.62
3336 3479 4.360563 ACTATGCTTGACCTTTCGTATCG 58.639 43.478 0.00 0.00 0.00 2.92
3350 3493 4.471157 TCGTATCGGTTTGTTTGGTTTC 57.529 40.909 0.00 0.00 0.00 2.78
3360 3503 3.988379 TGTTTGGTTTCTCAGCATGAC 57.012 42.857 0.00 0.00 42.56 3.06
3406 3549 2.875296 TCTTTTACTGGCAATGTGGCT 58.125 42.857 3.34 0.00 44.10 4.75
3523 3751 6.266558 ACACTGGAAAAATATTTACACAGGCA 59.733 34.615 20.61 6.21 34.37 4.75
3643 3871 6.659242 TCTGTCAGTACTTGTCTGTATCATCA 59.341 38.462 0.00 0.00 34.86 3.07
3668 3896 3.581770 AGGTAGTCACTTTGGGTAGGAAC 59.418 47.826 0.00 0.00 0.00 3.62
3682 3910 0.179000 AGGAACTGCTCCCGCATTAG 59.821 55.000 0.00 0.00 46.81 1.73
3687 3915 1.442526 CTGCTCCCGCATTAGCTTGG 61.443 60.000 0.00 0.00 46.74 3.61
3739 3967 1.616374 GGGTGGCTCGATTTGGAAAAA 59.384 47.619 0.00 0.00 0.00 1.94
3953 4181 5.193679 GGAATGTAGTTACTTGCCTTCCAT 58.806 41.667 13.86 0.00 0.00 3.41
3977 4205 2.205022 TTGCTTTGGCTACTGCTGAT 57.795 45.000 0.00 0.00 39.59 2.90
4019 4247 4.700213 GCCATAAGGAAGAAAGCTACACAA 59.300 41.667 0.00 0.00 36.89 3.33
4110 4338 3.204827 CCAAGGGCGCCGAGAATG 61.205 66.667 22.54 13.91 0.00 2.67
4129 4357 1.907739 CCGATCCAGCTTCTCCCAA 59.092 57.895 0.00 0.00 0.00 4.12
4154 4382 3.733684 GCTCTTTGCCGACAAGTTTTTCA 60.734 43.478 0.00 0.00 37.04 2.69
4232 4460 3.347216 GCTTATGAACATGGACAGTGGT 58.653 45.455 0.00 0.00 0.00 4.16
4244 4472 0.753262 ACAGTGGTGAGGTGAGTGTC 59.247 55.000 0.00 0.00 0.00 3.67
4253 4481 2.225267 TGAGGTGAGTGTCAGGTATCCA 60.225 50.000 0.00 0.00 0.00 3.41
4286 4514 1.162181 GCATGAGCTCAGCGGCATTA 61.162 55.000 22.96 0.00 37.91 1.90
4322 4550 2.203394 ACACCACAGGCAGCAAGG 60.203 61.111 0.00 0.00 0.00 3.61
4570 4798 1.813859 CAACCGAGACATAGCCCGA 59.186 57.895 0.00 0.00 0.00 5.14
4605 4833 3.937706 CAGAAAGATCTTGTTCCTGCGAT 59.062 43.478 9.17 0.00 32.03 4.58
4649 4877 8.031277 GCTGTTTGTTTATCTGAATTTCCATCT 58.969 33.333 0.00 0.00 0.00 2.90
5047 5276 3.048602 CCCACACCGACGAGACTT 58.951 61.111 0.00 0.00 0.00 3.01
5167 5396 0.106819 AGGATGCCCACATGAAGCTC 60.107 55.000 0.00 0.00 36.35 4.09
5225 5454 1.959710 AAGGAGGGGAGGAGAGAAAC 58.040 55.000 0.00 0.00 0.00 2.78
5234 5463 4.079730 GGGGAGGAGAGAAACCAATAATGT 60.080 45.833 0.00 0.00 0.00 2.71
5235 5464 4.884164 GGGAGGAGAGAAACCAATAATGTG 59.116 45.833 0.00 0.00 0.00 3.21
5456 5686 3.744940 AGACATGGAAATGGTGGTGAT 57.255 42.857 0.00 0.00 0.00 3.06
5470 5700 3.578282 GGTGGTGATTCTTGGTTGGAAAT 59.422 43.478 0.00 0.00 0.00 2.17
5471 5701 4.559153 GTGGTGATTCTTGGTTGGAAATG 58.441 43.478 0.00 0.00 0.00 2.32
5472 5702 3.577848 TGGTGATTCTTGGTTGGAAATGG 59.422 43.478 0.00 0.00 0.00 3.16
5473 5703 3.055891 GGTGATTCTTGGTTGGAAATGGG 60.056 47.826 0.00 0.00 0.00 4.00
5512 5742 1.152902 AGTGCAGAACAAGCTGGCA 60.153 52.632 0.00 0.00 36.41 4.92
5692 5923 2.834549 TGAGCAAAAACCTGGTGGAAAA 59.165 40.909 0.00 0.00 37.04 2.29
5693 5924 3.454082 TGAGCAAAAACCTGGTGGAAAAT 59.546 39.130 0.00 0.00 37.04 1.82
5694 5925 4.651503 TGAGCAAAAACCTGGTGGAAAATA 59.348 37.500 0.00 0.00 37.04 1.40
5695 5926 5.213891 AGCAAAAACCTGGTGGAAAATAG 57.786 39.130 0.00 0.00 37.04 1.73
5700 5931 1.094785 CCTGGTGGAAAATAGCGTGG 58.905 55.000 0.00 0.00 34.57 4.94
5861 6096 2.408704 CCACGACTTGATCACGAAGAAC 59.591 50.000 10.77 0.00 0.00 3.01
5873 6108 1.219393 GAAGAACCCGAGGAGGCTG 59.781 63.158 0.00 0.00 39.21 4.85
6233 6471 6.701145 TTTTAACTGTCACCAACATAAGCA 57.299 33.333 0.00 0.00 37.23 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 176 7.501225 GGTCACTTGCTTAGGCCTTTTATTATA 59.499 37.037 12.58 0.00 37.74 0.98
176 177 6.321435 GGTCACTTGCTTAGGCCTTTTATTAT 59.679 38.462 12.58 0.00 37.74 1.28
177 178 5.650703 GGTCACTTGCTTAGGCCTTTTATTA 59.349 40.000 12.58 0.00 37.74 0.98
253 255 3.433306 TGGTAGCTGCCATACAAGTTT 57.567 42.857 20.78 0.00 32.81 2.66
341 344 0.697658 TGGGCATGACACTCCAATCA 59.302 50.000 0.00 0.00 0.00 2.57
342 345 1.098050 GTGGGCATGACACTCCAATC 58.902 55.000 0.00 0.00 35.98 2.67
343 346 0.700564 AGTGGGCATGACACTCCAAT 59.299 50.000 15.28 3.01 45.50 3.16
344 347 2.154139 AGTGGGCATGACACTCCAA 58.846 52.632 15.28 0.00 45.50 3.53
345 348 3.905454 AGTGGGCATGACACTCCA 58.095 55.556 15.28 3.54 45.50 3.86
349 352 1.474077 GGATTCAAGTGGGCATGACAC 59.526 52.381 0.00 6.89 39.10 3.67
350 353 1.355381 AGGATTCAAGTGGGCATGACA 59.645 47.619 0.00 0.00 0.00 3.58
351 354 2.134789 AGGATTCAAGTGGGCATGAC 57.865 50.000 0.00 0.00 0.00 3.06
352 355 4.042062 CCTATAGGATTCAAGTGGGCATGA 59.958 45.833 14.11 0.00 37.39 3.07
353 356 4.042062 TCCTATAGGATTCAAGTGGGCATG 59.958 45.833 18.00 0.00 39.78 4.06
354 357 4.242811 TCCTATAGGATTCAAGTGGGCAT 58.757 43.478 18.00 0.00 39.78 4.40
355 358 3.664320 TCCTATAGGATTCAAGTGGGCA 58.336 45.455 18.00 0.00 39.78 5.36
366 369 5.948742 GCTCCTTGCTAATCCTATAGGAT 57.051 43.478 26.04 26.04 46.91 3.24
367 370 3.764434 CGCTCCTTGCTAATCCTATAGGA 59.236 47.826 23.76 23.76 43.81 2.94
368 371 3.511934 ACGCTCCTTGCTAATCCTATAGG 59.488 47.826 13.07 13.07 40.11 2.57
369 372 4.792521 ACGCTCCTTGCTAATCCTATAG 57.207 45.455 0.00 0.00 40.11 1.31
370 373 5.069914 TCAAACGCTCCTTGCTAATCCTATA 59.930 40.000 0.00 0.00 40.11 1.31
371 374 4.130118 CAAACGCTCCTTGCTAATCCTAT 58.870 43.478 0.00 0.00 40.11 2.57
372 375 3.196901 TCAAACGCTCCTTGCTAATCCTA 59.803 43.478 0.00 0.00 40.11 2.94
373 376 2.027192 TCAAACGCTCCTTGCTAATCCT 60.027 45.455 0.00 0.00 40.11 3.24
374 377 2.356135 TCAAACGCTCCTTGCTAATCC 58.644 47.619 0.00 0.00 40.11 3.01
375 378 4.622701 AATCAAACGCTCCTTGCTAATC 57.377 40.909 0.00 0.00 40.11 1.75
376 379 4.458989 TGAAATCAAACGCTCCTTGCTAAT 59.541 37.500 0.00 0.00 40.11 1.73
377 380 3.818210 TGAAATCAAACGCTCCTTGCTAA 59.182 39.130 0.00 0.00 40.11 3.09
378 381 3.188460 GTGAAATCAAACGCTCCTTGCTA 59.812 43.478 0.00 0.00 40.11 3.49
379 382 2.030805 GTGAAATCAAACGCTCCTTGCT 60.031 45.455 0.00 0.00 40.11 3.91
380 383 2.319472 GTGAAATCAAACGCTCCTTGC 58.681 47.619 0.00 0.00 38.57 4.01
381 384 2.574322 CGTGAAATCAAACGCTCCTTG 58.426 47.619 0.00 0.00 32.40 3.61
382 385 1.535462 CCGTGAAATCAAACGCTCCTT 59.465 47.619 0.00 0.00 38.46 3.36
383 386 1.156736 CCGTGAAATCAAACGCTCCT 58.843 50.000 0.00 0.00 38.46 3.69
384 387 0.168128 CCCGTGAAATCAAACGCTCC 59.832 55.000 0.00 0.00 38.46 4.70
385 388 1.153353 TCCCGTGAAATCAAACGCTC 58.847 50.000 0.00 0.00 38.46 5.03
386 389 1.600023 TTCCCGTGAAATCAAACGCT 58.400 45.000 0.00 0.00 38.46 5.07
387 390 2.409152 TTTCCCGTGAAATCAAACGC 57.591 45.000 0.00 0.00 38.46 4.84
388 391 2.724174 GCTTTTCCCGTGAAATCAAACG 59.276 45.455 0.00 0.00 40.08 3.60
389 392 3.712187 TGCTTTTCCCGTGAAATCAAAC 58.288 40.909 0.00 0.00 40.08 2.93
390 393 4.392921 TTGCTTTTCCCGTGAAATCAAA 57.607 36.364 0.00 0.00 40.08 2.69
391 394 4.367450 CTTTGCTTTTCCCGTGAAATCAA 58.633 39.130 0.00 0.00 40.08 2.57
392 395 3.243704 CCTTTGCTTTTCCCGTGAAATCA 60.244 43.478 0.00 0.00 40.08 2.57
393 396 3.005367 TCCTTTGCTTTTCCCGTGAAATC 59.995 43.478 0.00 0.00 40.08 2.17
394 397 2.962421 TCCTTTGCTTTTCCCGTGAAAT 59.038 40.909 0.00 0.00 40.08 2.17
395 398 2.379972 TCCTTTGCTTTTCCCGTGAAA 58.620 42.857 0.00 0.00 38.69 2.69
396 399 2.060050 TCCTTTGCTTTTCCCGTGAA 57.940 45.000 0.00 0.00 0.00 3.18
397 400 2.060050 TTCCTTTGCTTTTCCCGTGA 57.940 45.000 0.00 0.00 0.00 4.35
398 401 3.059166 CAATTCCTTTGCTTTTCCCGTG 58.941 45.455 0.00 0.00 0.00 4.94
399 402 2.698274 ACAATTCCTTTGCTTTTCCCGT 59.302 40.909 0.00 0.00 39.03 5.28
400 403 3.385193 ACAATTCCTTTGCTTTTCCCG 57.615 42.857 0.00 0.00 39.03 5.14
401 404 7.497579 TCTTTTTACAATTCCTTTGCTTTTCCC 59.502 33.333 0.00 0.00 39.03 3.97
402 405 8.432110 TCTTTTTACAATTCCTTTGCTTTTCC 57.568 30.769 0.00 0.00 39.03 3.13
403 406 8.551205 CCTCTTTTTACAATTCCTTTGCTTTTC 58.449 33.333 0.00 0.00 39.03 2.29
404 407 8.046708 ACCTCTTTTTACAATTCCTTTGCTTTT 58.953 29.630 0.00 0.00 39.03 2.27
405 408 7.564793 ACCTCTTTTTACAATTCCTTTGCTTT 58.435 30.769 0.00 0.00 39.03 3.51
406 409 7.124573 ACCTCTTTTTACAATTCCTTTGCTT 57.875 32.000 0.00 0.00 39.03 3.91
407 410 6.731292 ACCTCTTTTTACAATTCCTTTGCT 57.269 33.333 0.00 0.00 39.03 3.91
408 411 8.357402 TCTAACCTCTTTTTACAATTCCTTTGC 58.643 33.333 0.00 0.00 39.03 3.68
412 415 9.025041 CCATTCTAACCTCTTTTTACAATTCCT 57.975 33.333 0.00 0.00 0.00 3.36
413 416 9.020731 TCCATTCTAACCTCTTTTTACAATTCC 57.979 33.333 0.00 0.00 0.00 3.01
416 419 9.533831 ACATCCATTCTAACCTCTTTTTACAAT 57.466 29.630 0.00 0.00 0.00 2.71
417 420 8.934023 ACATCCATTCTAACCTCTTTTTACAA 57.066 30.769 0.00 0.00 0.00 2.41
418 421 8.934023 AACATCCATTCTAACCTCTTTTTACA 57.066 30.769 0.00 0.00 0.00 2.41
421 424 9.981460 ATCTAACATCCATTCTAACCTCTTTTT 57.019 29.630 0.00 0.00 0.00 1.94
422 425 9.981460 AATCTAACATCCATTCTAACCTCTTTT 57.019 29.630 0.00 0.00 0.00 2.27
423 426 9.981460 AAATCTAACATCCATTCTAACCTCTTT 57.019 29.630 0.00 0.00 0.00 2.52
424 427 9.620259 GAAATCTAACATCCATTCTAACCTCTT 57.380 33.333 0.00 0.00 0.00 2.85
425 428 8.214364 GGAAATCTAACATCCATTCTAACCTCT 58.786 37.037 0.00 0.00 33.30 3.69
426 429 8.214364 AGGAAATCTAACATCCATTCTAACCTC 58.786 37.037 0.00 0.00 35.62 3.85
427 430 8.107196 AGGAAATCTAACATCCATTCTAACCT 57.893 34.615 0.00 0.00 35.62 3.50
447 450 8.698973 TCTTTTGTACCACATTTCATAGGAAA 57.301 30.769 4.85 4.85 46.36 3.13
448 451 8.877864 ATCTTTTGTACCACATTTCATAGGAA 57.122 30.769 0.00 0.00 0.00 3.36
449 452 8.877864 AATCTTTTGTACCACATTTCATAGGA 57.122 30.769 0.00 0.00 0.00 2.94
450 453 8.190784 GGAATCTTTTGTACCACATTTCATAGG 58.809 37.037 0.00 0.00 0.00 2.57
451 454 8.739039 TGGAATCTTTTGTACCACATTTCATAG 58.261 33.333 0.00 0.00 0.00 2.23
452 455 8.642935 TGGAATCTTTTGTACCACATTTCATA 57.357 30.769 0.00 0.00 0.00 2.15
453 456 7.537596 TGGAATCTTTTGTACCACATTTCAT 57.462 32.000 0.00 0.00 0.00 2.57
454 457 6.968263 TGGAATCTTTTGTACCACATTTCA 57.032 33.333 0.00 0.00 0.00 2.69
455 458 7.331687 CCAATGGAATCTTTTGTACCACATTTC 59.668 37.037 0.00 0.00 33.38 2.17
456 459 7.016072 TCCAATGGAATCTTTTGTACCACATTT 59.984 33.333 0.00 0.00 33.38 2.32
457 460 6.496565 TCCAATGGAATCTTTTGTACCACATT 59.503 34.615 0.00 0.00 33.38 2.71
458 461 6.015918 TCCAATGGAATCTTTTGTACCACAT 58.984 36.000 0.00 0.00 33.38 3.21
459 462 5.389520 TCCAATGGAATCTTTTGTACCACA 58.610 37.500 0.00 0.00 33.38 4.17
460 463 5.975693 TCCAATGGAATCTTTTGTACCAC 57.024 39.130 0.00 0.00 33.38 4.16
461 464 6.985653 TTTCCAATGGAATCTTTTGTACCA 57.014 33.333 16.30 0.00 41.71 3.25
462 465 8.846943 ATTTTTCCAATGGAATCTTTTGTACC 57.153 30.769 16.30 0.00 41.71 3.34
497 500 8.827832 TTGTCCTTTGATTCATAGGATTGAAT 57.172 30.769 23.34 0.00 46.39 2.57
498 501 8.522830 GTTTGTCCTTTGATTCATAGGATTGAA 58.477 33.333 23.34 16.51 41.93 2.69
499 502 7.148255 CGTTTGTCCTTTGATTCATAGGATTGA 60.148 37.037 23.34 12.78 41.93 2.57
500 503 6.968904 CGTTTGTCCTTTGATTCATAGGATTG 59.031 38.462 23.34 11.50 41.93 2.67
501 504 6.659242 ACGTTTGTCCTTTGATTCATAGGATT 59.341 34.615 23.34 6.76 41.93 3.01
502 505 6.180472 ACGTTTGTCCTTTGATTCATAGGAT 58.820 36.000 23.34 8.45 41.93 3.24
503 506 5.556915 ACGTTTGTCCTTTGATTCATAGGA 58.443 37.500 18.57 18.57 38.81 2.94
504 507 5.880054 ACGTTTGTCCTTTGATTCATAGG 57.120 39.130 14.95 14.95 34.61 2.57
505 508 6.816640 TCCTACGTTTGTCCTTTGATTCATAG 59.183 38.462 0.00 0.00 0.00 2.23
506 509 6.703319 TCCTACGTTTGTCCTTTGATTCATA 58.297 36.000 0.00 0.00 0.00 2.15
507 510 5.556915 TCCTACGTTTGTCCTTTGATTCAT 58.443 37.500 0.00 0.00 0.00 2.57
508 511 4.963373 TCCTACGTTTGTCCTTTGATTCA 58.037 39.130 0.00 0.00 0.00 2.57
509 512 5.934935 TTCCTACGTTTGTCCTTTGATTC 57.065 39.130 0.00 0.00 0.00 2.52
510 513 6.702716 TTTTCCTACGTTTGTCCTTTGATT 57.297 33.333 0.00 0.00 0.00 2.57
511 514 6.894339 ATTTTCCTACGTTTGTCCTTTGAT 57.106 33.333 0.00 0.00 0.00 2.57
512 515 6.702716 AATTTTCCTACGTTTGTCCTTTGA 57.297 33.333 0.00 0.00 0.00 2.69
513 516 7.489757 TGAAAATTTTCCTACGTTTGTCCTTTG 59.510 33.333 24.51 0.00 36.36 2.77
514 517 7.548967 TGAAAATTTTCCTACGTTTGTCCTTT 58.451 30.769 24.51 0.00 36.36 3.11
515 518 7.102847 TGAAAATTTTCCTACGTTTGTCCTT 57.897 32.000 24.51 0.00 36.36 3.36
516 519 6.702716 TGAAAATTTTCCTACGTTTGTCCT 57.297 33.333 24.51 0.00 36.36 3.85
517 520 7.042992 CCTTTGAAAATTTTCCTACGTTTGTCC 60.043 37.037 24.51 0.27 36.36 4.02
518 521 7.703197 TCCTTTGAAAATTTTCCTACGTTTGTC 59.297 33.333 24.51 0.41 36.36 3.18
519 522 7.548967 TCCTTTGAAAATTTTCCTACGTTTGT 58.451 30.769 24.51 0.00 36.36 2.83
520 523 7.995463 TCCTTTGAAAATTTTCCTACGTTTG 57.005 32.000 24.51 8.22 36.36 2.93
521 524 9.607988 AAATCCTTTGAAAATTTTCCTACGTTT 57.392 25.926 24.51 15.85 36.36 3.60
522 525 9.256477 GAAATCCTTTGAAAATTTTCCTACGTT 57.744 29.630 24.51 11.95 36.36 3.99
523 526 8.417884 TGAAATCCTTTGAAAATTTTCCTACGT 58.582 29.630 24.51 7.10 36.36 3.57
524 527 8.810652 TGAAATCCTTTGAAAATTTTCCTACG 57.189 30.769 24.51 12.19 36.36 3.51
545 548 9.989296 TTCTATAGGATTTTTGGAGGATTGAAA 57.011 29.630 0.00 0.00 0.00 2.69
549 552 9.593565 GGAATTCTATAGGATTTTTGGAGGATT 57.406 33.333 7.72 0.00 0.00 3.01
550 553 8.173412 GGGAATTCTATAGGATTTTTGGAGGAT 58.827 37.037 7.72 0.00 0.00 3.24
551 554 7.353595 AGGGAATTCTATAGGATTTTTGGAGGA 59.646 37.037 7.72 0.00 0.00 3.71
552 555 7.530435 AGGGAATTCTATAGGATTTTTGGAGG 58.470 38.462 7.72 0.00 0.00 4.30
553 556 8.854117 CAAGGGAATTCTATAGGATTTTTGGAG 58.146 37.037 7.72 0.00 0.00 3.86
554 557 8.565239 TCAAGGGAATTCTATAGGATTTTTGGA 58.435 33.333 7.72 1.01 0.00 3.53
555 558 8.766994 TCAAGGGAATTCTATAGGATTTTTGG 57.233 34.615 7.72 0.00 0.00 3.28
561 564 9.804977 CTTTGATTCAAGGGAATTCTATAGGAT 57.195 33.333 5.23 0.00 43.69 3.24
562 565 8.220559 CCTTTGATTCAAGGGAATTCTATAGGA 58.779 37.037 19.97 0.00 42.20 2.94
563 566 8.220559 TCCTTTGATTCAAGGGAATTCTATAGG 58.779 37.037 23.66 11.92 44.61 2.57
564 567 9.282569 CTCCTTTGATTCAAGGGAATTCTATAG 57.717 37.037 25.17 11.53 46.30 1.31
565 568 7.721399 GCTCCTTTGATTCAAGGGAATTCTATA 59.279 37.037 25.17 6.47 46.30 1.31
566 569 6.548993 GCTCCTTTGATTCAAGGGAATTCTAT 59.451 38.462 25.17 0.00 46.30 1.98
567 570 5.888161 GCTCCTTTGATTCAAGGGAATTCTA 59.112 40.000 25.17 7.67 46.30 2.10
568 571 4.708909 GCTCCTTTGATTCAAGGGAATTCT 59.291 41.667 25.17 0.00 46.30 2.40
569 572 4.142071 GGCTCCTTTGATTCAAGGGAATTC 60.142 45.833 25.17 17.95 46.30 2.17
570 573 3.771479 GGCTCCTTTGATTCAAGGGAATT 59.229 43.478 25.17 0.00 46.30 2.17
571 574 3.369175 GGCTCCTTTGATTCAAGGGAAT 58.631 45.455 25.17 0.00 46.30 3.01
572 575 2.557452 GGGCTCCTTTGATTCAAGGGAA 60.557 50.000 25.17 13.03 46.30 3.97
573 576 1.005924 GGGCTCCTTTGATTCAAGGGA 59.994 52.381 24.09 24.09 45.21 4.20
574 577 1.006400 AGGGCTCCTTTGATTCAAGGG 59.994 52.381 18.89 18.89 41.18 3.95
575 578 2.521547 AGGGCTCCTTTGATTCAAGG 57.478 50.000 1.69 1.69 0.00 3.61
576 579 3.200825 TCCTAGGGCTCCTTTGATTCAAG 59.799 47.826 9.46 0.00 34.61 3.02
577 580 3.189606 TCCTAGGGCTCCTTTGATTCAA 58.810 45.455 9.46 0.00 34.61 2.69
578 581 2.845659 TCCTAGGGCTCCTTTGATTCA 58.154 47.619 9.46 0.00 34.61 2.57
579 582 3.933861 TTCCTAGGGCTCCTTTGATTC 57.066 47.619 9.46 0.00 34.61 2.52
580 583 4.230502 TCAATTCCTAGGGCTCCTTTGATT 59.769 41.667 9.46 0.00 34.61 2.57
581 584 3.788142 TCAATTCCTAGGGCTCCTTTGAT 59.212 43.478 9.46 0.00 34.61 2.57
582 585 3.189606 TCAATTCCTAGGGCTCCTTTGA 58.810 45.455 9.46 6.86 34.61 2.69
583 586 3.200825 TCTCAATTCCTAGGGCTCCTTTG 59.799 47.826 9.46 4.70 34.61 2.77
584 587 3.464828 TCTCAATTCCTAGGGCTCCTTT 58.535 45.455 9.46 0.00 34.61 3.11
585 588 3.136641 TCTCAATTCCTAGGGCTCCTT 57.863 47.619 9.46 0.00 34.61 3.36
586 589 2.877154 TCTCAATTCCTAGGGCTCCT 57.123 50.000 9.46 0.00 37.71 3.69
587 590 2.039613 CCATCTCAATTCCTAGGGCTCC 59.960 54.545 9.46 0.00 0.00 4.70
588 591 2.975489 TCCATCTCAATTCCTAGGGCTC 59.025 50.000 9.46 0.00 0.00 4.70
589 592 3.066208 TCCATCTCAATTCCTAGGGCT 57.934 47.619 9.46 0.00 0.00 5.19
590 593 3.073650 ACATCCATCTCAATTCCTAGGGC 59.926 47.826 9.46 0.00 0.00 5.19
591 594 4.349048 TGACATCCATCTCAATTCCTAGGG 59.651 45.833 9.46 0.00 0.00 3.53
592 595 5.557576 TGACATCCATCTCAATTCCTAGG 57.442 43.478 0.82 0.82 0.00 3.02
605 608 5.842874 TCATAGGAAGTGAGATGACATCCAT 59.157 40.000 11.92 0.00 36.38 3.41
606 609 5.211201 TCATAGGAAGTGAGATGACATCCA 58.789 41.667 11.92 7.11 36.38 3.41
607 610 5.798125 TCATAGGAAGTGAGATGACATCC 57.202 43.478 11.92 4.61 34.50 3.51
608 611 8.674263 AAAATCATAGGAAGTGAGATGACATC 57.326 34.615 7.39 7.39 31.41 3.06
609 612 8.492782 AGAAAATCATAGGAAGTGAGATGACAT 58.507 33.333 0.00 0.00 31.41 3.06
610 613 7.855375 AGAAAATCATAGGAAGTGAGATGACA 58.145 34.615 0.00 0.00 31.41 3.58
611 614 8.729805 AAGAAAATCATAGGAAGTGAGATGAC 57.270 34.615 0.00 0.00 31.41 3.06
615 618 9.838339 GGAATAAGAAAATCATAGGAAGTGAGA 57.162 33.333 0.00 0.00 0.00 3.27
616 619 9.844257 AGGAATAAGAAAATCATAGGAAGTGAG 57.156 33.333 0.00 0.00 0.00 3.51
644 647 9.640952 CCTTTGGTTCATAGGATAGGAATTTTA 57.359 33.333 0.00 0.00 43.72 1.52
645 648 8.343787 TCCTTTGGTTCATAGGATAGGAATTTT 58.656 33.333 3.54 0.00 43.72 1.82
646 649 7.882755 TCCTTTGGTTCATAGGATAGGAATTT 58.117 34.615 3.54 0.00 43.72 1.82
647 650 7.421853 CCTCCTTTGGTTCATAGGATAGGAATT 60.422 40.741 7.38 0.00 43.72 2.17
648 651 6.044871 CCTCCTTTGGTTCATAGGATAGGAAT 59.955 42.308 7.38 0.00 43.72 3.01
649 652 5.369699 CCTCCTTTGGTTCATAGGATAGGAA 59.630 44.000 7.38 0.00 39.94 3.36
650 653 4.907875 CCTCCTTTGGTTCATAGGATAGGA 59.092 45.833 7.38 0.00 39.94 2.94
651 654 4.505742 GCCTCCTTTGGTTCATAGGATAGG 60.506 50.000 7.38 7.57 39.94 2.57
652 655 4.505742 GGCCTCCTTTGGTTCATAGGATAG 60.506 50.000 0.00 4.66 39.94 2.08
653 656 3.394606 GGCCTCCTTTGGTTCATAGGATA 59.605 47.826 0.00 0.00 39.94 2.59
654 657 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
655 658 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
656 659 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
657 660 4.164221 TCTTAGGCCTCCTTTGGTTCATAG 59.836 45.833 9.68 0.00 34.61 2.23
658 661 4.108570 TCTTAGGCCTCCTTTGGTTCATA 58.891 43.478 9.68 0.00 34.61 2.15
659 662 2.919602 TCTTAGGCCTCCTTTGGTTCAT 59.080 45.455 9.68 0.00 34.61 2.57
660 663 2.344592 TCTTAGGCCTCCTTTGGTTCA 58.655 47.619 9.68 0.00 34.61 3.18
661 664 3.282885 CATCTTAGGCCTCCTTTGGTTC 58.717 50.000 9.68 0.00 34.61 3.62
662 665 2.649816 ACATCTTAGGCCTCCTTTGGTT 59.350 45.455 9.68 0.00 34.61 3.67
663 666 2.279173 ACATCTTAGGCCTCCTTTGGT 58.721 47.619 9.68 0.00 34.61 3.67
664 667 3.282885 GAACATCTTAGGCCTCCTTTGG 58.717 50.000 9.68 0.00 34.61 3.28
665 668 3.282885 GGAACATCTTAGGCCTCCTTTG 58.717 50.000 9.68 6.31 34.61 2.77
666 669 2.242452 GGGAACATCTTAGGCCTCCTTT 59.758 50.000 9.68 0.00 34.61 3.11
667 670 1.847088 GGGAACATCTTAGGCCTCCTT 59.153 52.381 9.68 0.00 34.61 3.36
668 671 1.512735 GGGAACATCTTAGGCCTCCT 58.487 55.000 9.68 0.00 37.71 3.69
669 672 0.474614 GGGGAACATCTTAGGCCTCC 59.525 60.000 9.68 0.46 0.00 4.30
670 673 0.474614 GGGGGAACATCTTAGGCCTC 59.525 60.000 9.68 0.00 0.00 4.70
671 674 0.253630 TGGGGGAACATCTTAGGCCT 60.254 55.000 11.78 11.78 0.00 5.19
672 675 0.629058 TTGGGGGAACATCTTAGGCC 59.371 55.000 0.00 0.00 0.00 5.19
673 676 1.685180 GGTTGGGGGAACATCTTAGGC 60.685 57.143 0.00 0.00 36.12 3.93
674 677 1.923148 AGGTTGGGGGAACATCTTAGG 59.077 52.381 0.00 0.00 36.12 2.69
675 678 2.357154 CCAGGTTGGGGGAACATCTTAG 60.357 54.545 0.00 0.00 36.12 2.18
746 752 3.945981 AACAAAAACGGTGGAGTTGTT 57.054 38.095 0.00 0.00 37.53 2.83
748 754 3.302170 CGAAAACAAAAACGGTGGAGTTG 59.698 43.478 0.00 0.00 34.14 3.16
777 783 1.613332 GGCAAGGCCCCCTTTCAAT 60.613 57.895 0.00 0.00 41.69 2.57
792 798 9.208022 CTATCATTTCATCTAGTTAAATCGGCA 57.792 33.333 0.00 0.00 0.00 5.69
793 799 9.209175 ACTATCATTTCATCTAGTTAAATCGGC 57.791 33.333 0.00 0.00 0.00 5.54
809 818 9.056005 TGCAGATGTTGGTAATACTATCATTTC 57.944 33.333 2.60 0.00 0.00 2.17
837 846 1.308783 TGGAGTGTGTTTGCGTGCAA 61.309 50.000 2.58 2.58 0.00 4.08
849 858 1.073025 TTTCCTGCGCATGGAGTGT 59.927 52.632 22.12 0.00 34.76 3.55
860 869 1.195674 GAAGCGAGAACTGTTTCCTGC 59.804 52.381 0.00 0.00 34.22 4.85
861 870 2.760374 AGAAGCGAGAACTGTTTCCTG 58.240 47.619 0.00 0.00 31.28 3.86
896 905 9.278978 AGTCATCATACTCATACTGTAGTGTAG 57.721 37.037 0.00 0.00 0.00 2.74
898 907 9.800572 ATAGTCATCATACTCATACTGTAGTGT 57.199 33.333 0.00 0.00 0.00 3.55
909 918 6.721208 TGCATCCAGTATAGTCATCATACTCA 59.279 38.462 0.00 0.00 37.15 3.41
1083 1100 3.496309 CTTGTGGAGTGCCCTGCCA 62.496 63.158 0.00 0.00 35.38 4.92
1096 1113 1.148157 CTCTGCCGCGTATCCTTGTG 61.148 60.000 4.92 0.00 0.00 3.33
1097 1114 1.141881 CTCTGCCGCGTATCCTTGT 59.858 57.895 4.92 0.00 0.00 3.16
1140 1157 3.131478 CAAAACCCTAGCCCCGCG 61.131 66.667 0.00 0.00 0.00 6.46
1234 1254 1.859302 ACCTCGAAGCATCCTTCTCT 58.141 50.000 0.00 0.00 44.24 3.10
1235 1255 3.802948 TTACCTCGAAGCATCCTTCTC 57.197 47.619 0.00 0.00 44.24 2.87
1236 1256 4.508662 CTTTTACCTCGAAGCATCCTTCT 58.491 43.478 0.00 0.00 44.24 2.85
1239 1259 2.572104 ACCTTTTACCTCGAAGCATCCT 59.428 45.455 0.00 0.00 0.00 3.24
1240 1260 2.937149 GACCTTTTACCTCGAAGCATCC 59.063 50.000 0.00 0.00 0.00 3.51
1241 1261 2.603560 CGACCTTTTACCTCGAAGCATC 59.396 50.000 0.00 0.00 0.00 3.91
1242 1262 2.618053 CGACCTTTTACCTCGAAGCAT 58.382 47.619 0.00 0.00 0.00 3.79
1243 1263 1.337447 CCGACCTTTTACCTCGAAGCA 60.337 52.381 0.00 0.00 0.00 3.91
1244 1264 1.356938 CCGACCTTTTACCTCGAAGC 58.643 55.000 0.00 0.00 0.00 3.86
1246 1266 0.388907 CGCCGACCTTTTACCTCGAA 60.389 55.000 0.00 0.00 0.00 3.71
1247 1267 1.213537 CGCCGACCTTTTACCTCGA 59.786 57.895 0.00 0.00 0.00 4.04
1248 1268 1.808390 CCGCCGACCTTTTACCTCG 60.808 63.158 0.00 0.00 0.00 4.63
1249 1269 2.104859 GCCGCCGACCTTTTACCTC 61.105 63.158 0.00 0.00 0.00 3.85
1250 1270 2.046604 GCCGCCGACCTTTTACCT 60.047 61.111 0.00 0.00 0.00 3.08
1316 1339 0.962356 CTGTGTGAGATGGGCCCAAC 60.962 60.000 32.58 28.02 0.00 3.77
1341 1364 2.859165 TCTGCTCGGTCCATTTCTTT 57.141 45.000 0.00 0.00 0.00 2.52
1361 1384 2.311542 ACCAATGTGGGCCTTTCATAGA 59.688 45.455 4.53 0.00 43.37 1.98
1423 1452 1.337917 GGAAGAGTGGAGACGGTTTCC 60.338 57.143 10.63 10.63 35.20 3.13
1424 1453 1.619332 AGGAAGAGTGGAGACGGTTTC 59.381 52.381 0.00 0.00 0.00 2.78
1425 1454 1.619332 GAGGAAGAGTGGAGACGGTTT 59.381 52.381 0.00 0.00 0.00 3.27
1426 1455 1.258676 GAGGAAGAGTGGAGACGGTT 58.741 55.000 0.00 0.00 0.00 4.44
1427 1456 0.612453 GGAGGAAGAGTGGAGACGGT 60.612 60.000 0.00 0.00 0.00 4.83
1430 1459 1.006639 AGGAGGAGGAAGAGTGGAGAC 59.993 57.143 0.00 0.00 0.00 3.36
1433 1462 0.336737 GGAGGAGGAGGAAGAGTGGA 59.663 60.000 0.00 0.00 0.00 4.02
1434 1463 0.689412 GGGAGGAGGAGGAAGAGTGG 60.689 65.000 0.00 0.00 0.00 4.00
1435 1464 1.040339 CGGGAGGAGGAGGAAGAGTG 61.040 65.000 0.00 0.00 0.00 3.51
1436 1465 1.308326 CGGGAGGAGGAGGAAGAGT 59.692 63.158 0.00 0.00 0.00 3.24
1437 1466 0.753848 GACGGGAGGAGGAGGAAGAG 60.754 65.000 0.00 0.00 0.00 2.85
1438 1467 1.215679 AGACGGGAGGAGGAGGAAGA 61.216 60.000 0.00 0.00 0.00 2.87
1439 1468 0.753848 GAGACGGGAGGAGGAGGAAG 60.754 65.000 0.00 0.00 0.00 3.46
1440 1469 1.306970 GAGACGGGAGGAGGAGGAA 59.693 63.158 0.00 0.00 0.00 3.36
1671 1703 2.720750 GCACAACGAACAACGCCG 60.721 61.111 0.00 0.00 46.94 6.46
1918 1951 4.759782 AGGAACACTACTGACATATGTGC 58.240 43.478 14.43 5.76 32.49 4.57
2023 2077 4.246458 CAAGACTAAGGTAGTGCAAGTCC 58.754 47.826 8.48 2.13 39.59 3.85
2386 2443 1.886542 GGAGCAAGGTTTGGTAGTTGG 59.113 52.381 0.00 0.00 42.23 3.77
2388 2445 2.174854 ACTGGAGCAAGGTTTGGTAGTT 59.825 45.455 0.00 0.00 42.23 2.24
2583 2640 1.755384 CGGGGGAATTAGGAGCCTC 59.245 63.158 0.00 0.00 0.00 4.70
2731 2788 6.963049 TGTCCGCTTAGAACTTTTAGATTC 57.037 37.500 0.00 0.00 0.00 2.52
2795 2852 2.238898 GGGGGCTCAAACAGTACACTAT 59.761 50.000 0.00 0.00 0.00 2.12
2959 3020 5.390387 TGCTACTTTTCCAGGGTGTTTTAT 58.610 37.500 0.00 0.00 0.00 1.40
2960 3021 4.794334 TGCTACTTTTCCAGGGTGTTTTA 58.206 39.130 0.00 0.00 0.00 1.52
2961 3022 3.637769 TGCTACTTTTCCAGGGTGTTTT 58.362 40.909 0.00 0.00 0.00 2.43
3041 3184 8.863049 CAATTTCAGCTGTTATCCAACAATAAC 58.137 33.333 14.67 0.00 43.92 1.89
3094 3237 4.806952 AGACTAGTAATCTCCTGGCTCT 57.193 45.455 0.00 0.00 0.00 4.09
3218 3361 6.381133 GGTTAATGAAGATGAAGGTGGGAAAT 59.619 38.462 0.00 0.00 0.00 2.17
3330 3473 4.024725 TGAGAAACCAAACAAACCGATACG 60.025 41.667 0.00 0.00 0.00 3.06
3336 3479 3.518634 TGCTGAGAAACCAAACAAACC 57.481 42.857 0.00 0.00 0.00 3.27
3350 3493 2.414994 AATCACCAGGTCATGCTGAG 57.585 50.000 2.22 0.00 27.09 3.35
3360 3503 3.193479 GGAACAGGCTTTTAATCACCAGG 59.807 47.826 0.00 0.00 0.00 4.45
3406 3549 6.211184 AGGATCAAAATATGCTTGACACCAAA 59.789 34.615 17.95 0.00 35.70 3.28
3539 3767 4.717877 ACACATGTGAATTCCTTGAGTCA 58.282 39.130 31.94 0.00 0.00 3.41
3614 3842 7.814587 TGATACAGACAAGTACTGACAGAAATG 59.185 37.037 10.08 5.25 38.55 2.32
3643 3871 3.775316 CCTACCCAAAGTGACTACCTCAT 59.225 47.826 0.00 0.00 0.00 2.90
3682 3910 3.876274 TGTCTAGTCATCAGACCAAGC 57.124 47.619 0.38 0.00 46.15 4.01
3687 3915 6.682746 TGAAGTTCTTGTCTAGTCATCAGAC 58.317 40.000 4.17 0.00 45.31 3.51
3953 4181 2.958355 AGCAGTAGCCAAAGCAAAGAAA 59.042 40.909 0.00 0.00 43.56 2.52
3977 4205 1.550072 GCCTTTTGCTTGGATTGCCTA 59.450 47.619 0.00 0.00 36.87 3.93
4110 4338 2.110006 GGGAGAAGCTGGATCGGC 59.890 66.667 0.00 1.67 35.73 5.54
4154 4382 1.543429 CCGCTTGTCTTCCTGTCCTTT 60.543 52.381 0.00 0.00 0.00 3.11
4232 4460 2.225267 TGGATACCTGACACTCACCTCA 60.225 50.000 0.00 0.00 0.00 3.86
4244 4472 4.808414 TGACTTCAAGACTGGATACCTG 57.192 45.455 0.00 0.00 0.00 4.00
4253 4481 3.008330 GCTCATGCATGACTTCAAGACT 58.992 45.455 25.42 0.00 39.41 3.24
4286 4514 4.400251 GGTGTCATGTTGATGATCATTGGT 59.600 41.667 10.14 0.00 40.78 3.67
4514 4742 1.005340 CAGCCGTCTCAGCAATCTTC 58.995 55.000 0.00 0.00 0.00 2.87
4570 4798 4.282195 AGATCTTTCTGAACGAAGGACTGT 59.718 41.667 0.47 0.00 40.07 3.55
4605 4833 2.783828 GCTCTTAGCTACGATGAGCA 57.216 50.000 21.93 0.00 46.41 4.26
4649 4877 0.391927 GCGGTACCAACATACCAGCA 60.392 55.000 13.54 0.00 44.36 4.41
4685 4913 2.878406 CAACCACTTCCACAAGAATCGT 59.122 45.455 0.00 0.00 32.82 3.73
4816 5044 8.304596 TCGTACTTATCAGATGTTTCAGTCTTT 58.695 33.333 0.00 0.00 0.00 2.52
5047 5276 4.312443 AGTTTTACTTCGATTTCTCCGCA 58.688 39.130 0.00 0.00 0.00 5.69
5167 5396 1.047002 TGTCCAAAGCCATTGTTGGG 58.953 50.000 2.77 0.00 43.82 4.12
5225 5454 6.767524 TGTAAGCTTAACCCACATTATTGG 57.232 37.500 7.99 0.00 36.26 3.16
5234 5463 1.881324 GCCGTTTGTAAGCTTAACCCA 59.119 47.619 7.99 0.00 0.00 4.51
5235 5464 1.881324 TGCCGTTTGTAAGCTTAACCC 59.119 47.619 7.99 0.00 0.00 4.11
5383 5612 3.273434 TGTTTGGCAGCTCATGATACTC 58.727 45.455 0.00 0.00 0.00 2.59
5432 5662 3.321682 CACCACCATTTCCATGTCTTTGT 59.678 43.478 0.00 0.00 0.00 2.83
5456 5686 3.386402 GTGAACCCATTTCCAACCAAGAA 59.614 43.478 0.00 0.00 32.58 2.52
5470 5700 2.429930 CTGCGGAAGGTGAACCCA 59.570 61.111 0.00 0.00 36.42 4.51
5471 5701 3.056328 GCTGCGGAAGGTGAACCC 61.056 66.667 0.00 0.00 36.42 4.11
5472 5702 3.423154 CGCTGCGGAAGGTGAACC 61.423 66.667 15.40 0.00 0.00 3.62
5494 5724 0.752743 TTGCCAGCTTGTTCTGCACT 60.753 50.000 0.00 0.00 32.87 4.40
5512 5742 2.657237 CTCGGCCTCGTCACCTTT 59.343 61.111 0.00 0.00 37.69 3.11
5593 5823 2.649034 GAGACGGTGGCGAAGTCA 59.351 61.111 7.99 0.00 43.93 3.41
5669 5899 1.064017 TCCACCAGGTTTTTGCTCAGT 60.064 47.619 0.00 0.00 35.89 3.41
5873 6108 1.495951 GACGTTCAACATCGTGGCC 59.504 57.895 0.00 0.00 40.39 5.36
6015 6250 3.515316 CTGTGGAGGTGGCGTTCGT 62.515 63.158 0.00 0.00 0.00 3.85
6116 6354 2.568090 GCAAACATGGCTCCCGTG 59.432 61.111 0.00 2.02 45.34 4.94
6233 6471 7.067008 AGACATGTTACGGCTATAAAAAGCAAT 59.933 33.333 0.00 0.00 44.64 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.