Multiple sequence alignment - TraesCS3D01G167400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G167400 chr3D 100.000 2661 0 0 1 2661 141657124 141659784 0.000000e+00 4915.0
1 TraesCS3D01G167400 chr3D 94.724 417 20 1 1932 2348 579244818 579244404 0.000000e+00 647.0
2 TraesCS3D01G167400 chr3D 77.928 222 46 3 242 462 96672306 96672087 4.620000e-28 135.0
3 TraesCS3D01G167400 chr3D 100.000 28 0 0 2344 2371 579235696 579235669 5.000000e-03 52.8
4 TraesCS3D01G167400 chr3A 91.930 1772 90 22 187 1930 160073646 160075392 0.000000e+00 2431.0
5 TraesCS3D01G167400 chr3A 94.366 284 12 2 2382 2661 160075380 160075663 1.460000e-117 433.0
6 TraesCS3D01G167400 chr3A 80.282 142 21 6 181 319 114543265 114543128 1.690000e-17 100.0
7 TraesCS3D01G167400 chr3B 91.555 1788 90 17 170 1929 203642137 203643891 0.000000e+00 2409.0
8 TraesCS3D01G167400 chr3B 96.429 280 10 0 2382 2661 203643880 203644159 1.870000e-126 462.0
9 TraesCS3D01G167400 chr3B 82.723 191 9 10 1 172 203639032 203639217 5.930000e-32 148.0
10 TraesCS3D01G167400 chr3B 95.122 82 4 0 1 82 344335593 344335512 2.150000e-26 130.0
11 TraesCS3D01G167400 chr1D 97.351 453 9 2 1931 2382 60212619 60213069 0.000000e+00 767.0
12 TraesCS3D01G167400 chr1D 89.024 82 8 1 1 82 419721877 419721797 1.690000e-17 100.0
13 TraesCS3D01G167400 chr6D 94.889 450 21 1 1933 2382 402361081 402361528 0.000000e+00 702.0
14 TraesCS3D01G167400 chr6B 94.481 453 21 2 1930 2382 181170073 181170521 0.000000e+00 695.0
15 TraesCS3D01G167400 chr2A 92.037 427 13 6 1956 2382 596353162 596352757 4.940000e-162 580.0
16 TraesCS3D01G167400 chr2A 80.627 351 58 9 179 521 749909332 749908984 2.030000e-66 263.0
17 TraesCS3D01G167400 chr5D 94.837 368 17 1 1929 2296 558588319 558587954 8.260000e-160 573.0
18 TraesCS3D01G167400 chr5D 96.552 319 11 0 1932 2250 9384970 9385288 1.810000e-146 529.0
19 TraesCS3D01G167400 chr5D 90.123 81 8 0 1 81 370005911 370005831 3.620000e-19 106.0
20 TraesCS3D01G167400 chr2D 95.506 356 14 1 1998 2353 57182391 57182744 3.840000e-158 568.0
21 TraesCS3D01G167400 chr2D 88.000 200 18 4 1930 2128 7966390 7966196 5.730000e-57 231.0
22 TraesCS3D01G167400 chr2D 91.463 82 7 0 1 82 49354955 49354874 2.160000e-21 113.0
23 TraesCS3D01G167400 chr2D 100.000 34 0 0 2349 2382 57191312 57191345 2.210000e-06 63.9
24 TraesCS3D01G167400 chr5B 87.151 358 19 5 2034 2384 339459096 339458759 5.380000e-102 381.0
25 TraesCS3D01G167400 chrUn 83.333 342 47 9 180 514 10264216 10263878 9.250000e-80 307.0
26 TraesCS3D01G167400 chr7D 84.345 313 40 8 174 483 138285605 138285299 5.570000e-77 298.0
27 TraesCS3D01G167400 chr5A 83.566 286 45 2 180 464 356103435 356103151 1.570000e-67 267.0
28 TraesCS3D01G167400 chr2B 80.672 357 55 11 174 521 569978950 569978599 5.650000e-67 265.0
29 TraesCS3D01G167400 chr4A 98.684 76 1 0 2307 2382 722679052 722678977 4.620000e-28 135.0
30 TraesCS3D01G167400 chr1B 90.244 82 7 1 1 82 566830070 566829990 3.620000e-19 106.0
31 TraesCS3D01G167400 chr1A 80.769 104 17 1 354 457 373786532 373786432 7.900000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G167400 chr3D 141657124 141659784 2660 False 4915.000000 4915 100.000000 1 2661 1 chr3D.!!$F1 2660
1 TraesCS3D01G167400 chr3A 160073646 160075663 2017 False 1432.000000 2431 93.148000 187 2661 2 chr3A.!!$F1 2474
2 TraesCS3D01G167400 chr3B 203639032 203644159 5127 False 1006.333333 2409 90.235667 1 2661 3 chr3B.!!$F1 2660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
903 3860 0.665068 AGTCGCGCACACGTATTCAA 60.665 50.0 8.75 0.0 42.83 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2372 5348 0.037512 CTCACAGTGACTGGAGCTGG 60.038 60.0 17.92 0.0 35.51 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 8.603898 ACCTAAAGGGGTAAGAAAAATATTGG 57.396 34.615 0.20 0.00 37.90 3.16
67 68 7.553334 ACTACATATCTAGGTTTTTCTCGCAA 58.447 34.615 0.00 0.00 0.00 4.85
83 84 7.558161 TTCTCGCAATCTGATGAACATAAAT 57.442 32.000 0.00 0.00 0.00 1.40
86 87 6.718388 TCGCAATCTGATGAACATAAATGTC 58.282 36.000 0.00 0.00 40.80 3.06
113 130 1.203237 GCCCCATTTGTTGCCCTAAT 58.797 50.000 0.00 0.00 0.00 1.73
114 131 1.559219 GCCCCATTTGTTGCCCTAATT 59.441 47.619 0.00 0.00 0.00 1.40
115 132 2.769095 GCCCCATTTGTTGCCCTAATTA 59.231 45.455 0.00 0.00 0.00 1.40
116 133 3.198853 GCCCCATTTGTTGCCCTAATTAA 59.801 43.478 0.00 0.00 0.00 1.40
172 192 9.483916 TTCGAGATTAAAAAGTGTATGTTGAGA 57.516 29.630 0.00 0.00 0.00 3.27
173 193 9.140286 TCGAGATTAAAAAGTGTATGTTGAGAG 57.860 33.333 0.00 0.00 0.00 3.20
174 194 7.900352 CGAGATTAAAAAGTGTATGTTGAGAGC 59.100 37.037 0.00 0.00 0.00 4.09
192 3134 2.746362 GAGCATCCCAAGTTGAAGTCTG 59.254 50.000 3.87 0.29 0.00 3.51
198 3140 4.163427 TCCCAAGTTGAAGTCTGAGATCT 58.837 43.478 3.87 0.00 0.00 2.75
201 3144 6.071108 TCCCAAGTTGAAGTCTGAGATCTTAG 60.071 42.308 8.20 8.20 0.00 2.18
203 3146 5.930837 AGTTGAAGTCTGAGATCTTAGGG 57.069 43.478 14.07 0.00 0.00 3.53
238 3181 2.556622 ACTTTGGGCCATTTAGAACACG 59.443 45.455 7.26 0.00 0.00 4.49
326 3269 6.708285 CATCAGTTGGATCCATAGATGATCA 58.292 40.000 29.56 8.79 34.12 2.92
526 3475 5.580691 CGGCAGTTATTGTGATCTTGAACTA 59.419 40.000 0.00 0.00 0.00 2.24
565 3514 5.824904 AGGTTATGTGAATCACTTGATGC 57.175 39.130 14.97 0.00 35.11 3.91
566 3515 5.255687 AGGTTATGTGAATCACTTGATGCA 58.744 37.500 14.97 0.00 37.75 3.96
610 3560 8.119246 TCCCTCCTTTGGAAAACAATATATTCA 58.881 33.333 0.00 0.00 39.21 2.57
781 3736 7.864108 TTCTTGAGATTTGTTGAGTTCAAGA 57.136 32.000 9.85 9.85 45.00 3.02
903 3860 0.665068 AGTCGCGCACACGTATTCAA 60.665 50.000 8.75 0.00 42.83 2.69
912 3869 3.873910 CACACGTATTCAATTCCCTCCT 58.126 45.455 0.00 0.00 0.00 3.69
969 3926 6.880484 TCTACCGAACATATTTCAGCCTAAA 58.120 36.000 0.00 0.00 0.00 1.85
976 3933 5.954335 ACATATTTCAGCCTAAACACAAGC 58.046 37.500 0.00 0.00 0.00 4.01
1265 4236 3.758973 TTCTTCGTGGCCGCCAACA 62.759 57.895 15.39 0.00 34.18 3.33
1389 4360 4.509737 GCCCGGCCGTCTCTGTAC 62.510 72.222 26.12 0.00 0.00 2.90
1390 4361 3.066190 CCCGGCCGTCTCTGTACA 61.066 66.667 26.12 0.00 0.00 2.90
1391 4362 2.490217 CCGGCCGTCTCTGTACAG 59.510 66.667 26.12 17.17 0.00 2.74
1392 4363 2.341101 CCGGCCGTCTCTGTACAGT 61.341 63.158 26.12 0.00 0.00 3.55
1393 4364 1.028330 CCGGCCGTCTCTGTACAGTA 61.028 60.000 26.12 9.43 0.00 2.74
1394 4365 1.022735 CGGCCGTCTCTGTACAGTAT 58.977 55.000 21.99 0.00 0.00 2.12
1395 4366 1.002684 CGGCCGTCTCTGTACAGTATC 60.003 57.143 21.99 12.01 0.00 2.24
1667 4638 0.666913 CATGAACAGCTAGGGCATGC 59.333 55.000 9.90 9.90 41.70 4.06
1668 4639 0.549950 ATGAACAGCTAGGGCATGCT 59.450 50.000 18.92 0.24 41.70 3.79
1823 4798 7.923414 AGTATTGCTTTGGTAGAACTAAAGG 57.077 36.000 15.00 1.42 43.94 3.11
1844 4820 3.486542 GGTTCGTCGACCTGACTATGTAC 60.487 52.174 10.58 0.00 45.87 2.90
1847 4823 3.558829 TCGTCGACCTGACTATGTACATC 59.441 47.826 12.68 0.00 45.87 3.06
1857 4833 8.321353 ACCTGACTATGTACATCAATTTGAAGA 58.679 33.333 12.68 0.00 0.00 2.87
1917 4893 6.506147 TCCATGAGACAAACAATGTTTCTTG 58.494 36.000 8.59 6.44 44.12 3.02
1918 4894 6.096705 TCCATGAGACAAACAATGTTTCTTGT 59.903 34.615 8.59 4.99 44.12 3.16
1919 4895 6.418819 CCATGAGACAAACAATGTTTCTTGTC 59.581 38.462 17.13 17.13 44.12 3.18
1920 4896 6.507958 TGAGACAAACAATGTTTCTTGTCA 57.492 33.333 23.25 17.18 46.51 3.58
1921 4897 6.321717 TGAGACAAACAATGTTTCTTGTCAC 58.678 36.000 23.25 19.18 46.51 3.67
1922 4898 6.150976 TGAGACAAACAATGTTTCTTGTCACT 59.849 34.615 23.25 10.09 46.51 3.41
1923 4899 6.324819 AGACAAACAATGTTTCTTGTCACTG 58.675 36.000 23.25 8.92 46.51 3.66
1924 4900 6.024552 ACAAACAATGTTTCTTGTCACTGT 57.975 33.333 8.59 0.00 40.06 3.55
1925 4901 5.863397 ACAAACAATGTTTCTTGTCACTGTG 59.137 36.000 8.59 0.17 40.06 3.66
1926 4902 5.895636 AACAATGTTTCTTGTCACTGTGA 57.104 34.783 6.36 6.36 38.38 3.58
1927 4903 5.490139 ACAATGTTTCTTGTCACTGTGAG 57.510 39.130 11.41 0.00 34.26 3.51
1928 4904 4.943705 ACAATGTTTCTTGTCACTGTGAGT 59.056 37.500 11.41 0.00 34.26 3.41
1929 4905 5.415701 ACAATGTTTCTTGTCACTGTGAGTT 59.584 36.000 11.41 0.00 34.26 3.01
1930 4906 6.071952 ACAATGTTTCTTGTCACTGTGAGTTT 60.072 34.615 11.41 0.00 34.26 2.66
1931 4907 5.957842 TGTTTCTTGTCACTGTGAGTTTT 57.042 34.783 11.41 0.00 0.00 2.43
1932 4908 6.325919 TGTTTCTTGTCACTGTGAGTTTTT 57.674 33.333 11.41 0.00 0.00 1.94
1963 4939 8.789825 TTGCGGGTAAAAACTTATATTACTCA 57.210 30.769 0.00 0.00 31.00 3.41
1964 4940 8.789825 TGCGGGTAAAAACTTATATTACTCAA 57.210 30.769 0.00 0.00 31.00 3.02
1965 4941 9.228949 TGCGGGTAAAAACTTATATTACTCAAA 57.771 29.630 0.00 0.00 31.00 2.69
1966 4942 9.494479 GCGGGTAAAAACTTATATTACTCAAAC 57.506 33.333 0.00 0.00 31.00 2.93
1975 4951 9.444600 AACTTATATTACTCAAACATCAACCGT 57.555 29.630 0.00 0.00 0.00 4.83
1978 4954 9.872721 TTATATTACTCAAACATCAACCGTACA 57.127 29.630 0.00 0.00 0.00 2.90
1979 4955 8.780846 ATATTACTCAAACATCAACCGTACAA 57.219 30.769 0.00 0.00 0.00 2.41
1980 4956 7.681939 ATTACTCAAACATCAACCGTACAAT 57.318 32.000 0.00 0.00 0.00 2.71
1981 4957 5.607119 ACTCAAACATCAACCGTACAATC 57.393 39.130 0.00 0.00 0.00 2.67
1982 4958 4.454504 ACTCAAACATCAACCGTACAATCC 59.545 41.667 0.00 0.00 0.00 3.01
1983 4959 4.647611 TCAAACATCAACCGTACAATCCT 58.352 39.130 0.00 0.00 0.00 3.24
1984 4960 5.067273 TCAAACATCAACCGTACAATCCTT 58.933 37.500 0.00 0.00 0.00 3.36
1985 4961 5.180492 TCAAACATCAACCGTACAATCCTTC 59.820 40.000 0.00 0.00 0.00 3.46
1986 4962 4.553330 ACATCAACCGTACAATCCTTCT 57.447 40.909 0.00 0.00 0.00 2.85
1987 4963 4.906618 ACATCAACCGTACAATCCTTCTT 58.093 39.130 0.00 0.00 0.00 2.52
1988 4964 6.045072 ACATCAACCGTACAATCCTTCTTA 57.955 37.500 0.00 0.00 0.00 2.10
1989 4965 5.873164 ACATCAACCGTACAATCCTTCTTAC 59.127 40.000 0.00 0.00 0.00 2.34
1990 4966 5.471556 TCAACCGTACAATCCTTCTTACA 57.528 39.130 0.00 0.00 0.00 2.41
1991 4967 6.045072 TCAACCGTACAATCCTTCTTACAT 57.955 37.500 0.00 0.00 0.00 2.29
1992 4968 7.172868 TCAACCGTACAATCCTTCTTACATA 57.827 36.000 0.00 0.00 0.00 2.29
1993 4969 7.613585 TCAACCGTACAATCCTTCTTACATAA 58.386 34.615 0.00 0.00 0.00 1.90
1994 4970 7.546667 TCAACCGTACAATCCTTCTTACATAAC 59.453 37.037 0.00 0.00 0.00 1.89
1995 4971 7.179076 ACCGTACAATCCTTCTTACATAACT 57.821 36.000 0.00 0.00 0.00 2.24
1996 4972 7.263496 ACCGTACAATCCTTCTTACATAACTC 58.737 38.462 0.00 0.00 0.00 3.01
1997 4973 7.093640 ACCGTACAATCCTTCTTACATAACTCA 60.094 37.037 0.00 0.00 0.00 3.41
1998 4974 7.762615 CCGTACAATCCTTCTTACATAACTCAA 59.237 37.037 0.00 0.00 0.00 3.02
1999 4975 9.314321 CGTACAATCCTTCTTACATAACTCAAT 57.686 33.333 0.00 0.00 0.00 2.57
2002 4978 9.167311 ACAATCCTTCTTACATAACTCAATGAC 57.833 33.333 0.00 0.00 0.00 3.06
2003 4979 9.388506 CAATCCTTCTTACATAACTCAATGACT 57.611 33.333 0.00 0.00 0.00 3.41
2004 4980 9.965902 AATCCTTCTTACATAACTCAATGACTT 57.034 29.630 0.00 0.00 0.00 3.01
2005 4981 9.606631 ATCCTTCTTACATAACTCAATGACTTC 57.393 33.333 0.00 0.00 0.00 3.01
2006 4982 8.816894 TCCTTCTTACATAACTCAATGACTTCT 58.183 33.333 0.00 0.00 0.00 2.85
2007 4983 9.442047 CCTTCTTACATAACTCAATGACTTCTT 57.558 33.333 0.00 0.00 0.00 2.52
2009 4985 9.996554 TTCTTACATAACTCAATGACTTCTTGA 57.003 29.630 0.00 0.00 0.00 3.02
2010 4986 9.996554 TCTTACATAACTCAATGACTTCTTGAA 57.003 29.630 0.00 0.00 32.53 2.69
2012 4988 7.678947 ACATAACTCAATGACTTCTTGAAGG 57.321 36.000 13.97 0.00 32.53 3.46
2013 4989 6.150140 ACATAACTCAATGACTTCTTGAAGGC 59.850 38.462 13.97 11.71 32.53 4.35
2014 4990 3.416156 ACTCAATGACTTCTTGAAGGCC 58.584 45.455 13.05 0.00 32.53 5.19
2015 4991 3.073650 ACTCAATGACTTCTTGAAGGCCT 59.926 43.478 13.05 0.00 32.53 5.19
2016 4992 3.415212 TCAATGACTTCTTGAAGGCCTG 58.585 45.455 5.69 10.40 29.96 4.85
2017 4993 3.072915 TCAATGACTTCTTGAAGGCCTGA 59.927 43.478 5.69 12.26 29.96 3.86
2018 4994 2.847327 TGACTTCTTGAAGGCCTGAG 57.153 50.000 5.69 5.23 0.00 3.35
2019 4995 1.271054 TGACTTCTTGAAGGCCTGAGC 60.271 52.381 5.69 0.00 38.76 4.26
2029 5005 3.051210 GCCTGAGCCCAACCAAAC 58.949 61.111 0.00 0.00 0.00 2.93
2030 5006 1.531602 GCCTGAGCCCAACCAAACT 60.532 57.895 0.00 0.00 0.00 2.66
2031 5007 0.251165 GCCTGAGCCCAACCAAACTA 60.251 55.000 0.00 0.00 0.00 2.24
2032 5008 1.534729 CCTGAGCCCAACCAAACTAC 58.465 55.000 0.00 0.00 0.00 2.73
2033 5009 1.156736 CTGAGCCCAACCAAACTACG 58.843 55.000 0.00 0.00 0.00 3.51
2034 5010 0.250553 TGAGCCCAACCAAACTACGG 60.251 55.000 0.00 0.00 0.00 4.02
2035 5011 0.250597 GAGCCCAACCAAACTACGGT 60.251 55.000 0.00 0.00 38.85 4.83
2037 5013 0.594602 GCCCAACCAAACTACGGTTC 59.405 55.000 0.00 0.00 45.06 3.62
2038 5014 1.816572 GCCCAACCAAACTACGGTTCT 60.817 52.381 0.00 0.00 45.06 3.01
2039 5015 2.550639 GCCCAACCAAACTACGGTTCTA 60.551 50.000 0.00 0.00 45.06 2.10
2040 5016 3.069289 CCCAACCAAACTACGGTTCTAC 58.931 50.000 0.00 0.00 45.06 2.59
2041 5017 3.244318 CCCAACCAAACTACGGTTCTACT 60.244 47.826 0.00 0.00 45.06 2.57
2042 5018 4.021192 CCCAACCAAACTACGGTTCTACTA 60.021 45.833 0.00 0.00 45.06 1.82
2043 5019 5.337813 CCCAACCAAACTACGGTTCTACTAT 60.338 44.000 0.00 0.00 45.06 2.12
2044 5020 5.809051 CCAACCAAACTACGGTTCTACTATC 59.191 44.000 0.00 0.00 45.06 2.08
2045 5021 6.392354 CAACCAAACTACGGTTCTACTATCA 58.608 40.000 0.00 0.00 45.06 2.15
2046 5022 6.205101 ACCAAACTACGGTTCTACTATCAG 57.795 41.667 0.00 0.00 34.14 2.90
2047 5023 5.713861 ACCAAACTACGGTTCTACTATCAGT 59.286 40.000 0.00 0.00 34.14 3.41
2048 5024 6.210185 ACCAAACTACGGTTCTACTATCAGTT 59.790 38.462 0.00 0.00 34.14 3.16
2049 5025 6.750963 CCAAACTACGGTTCTACTATCAGTTC 59.249 42.308 0.00 0.00 34.14 3.01
2050 5026 7.362747 CCAAACTACGGTTCTACTATCAGTTCT 60.363 40.741 0.00 0.00 34.14 3.01
2051 5027 8.671921 CAAACTACGGTTCTACTATCAGTTCTA 58.328 37.037 0.00 0.00 34.14 2.10
2052 5028 8.436046 AACTACGGTTCTACTATCAGTTCTAG 57.564 38.462 0.00 0.00 0.00 2.43
2053 5029 5.754543 ACGGTTCTACTATCAGTTCTAGC 57.245 43.478 0.00 0.00 0.00 3.42
2054 5030 5.191426 ACGGTTCTACTATCAGTTCTAGCA 58.809 41.667 0.00 0.00 0.00 3.49
2055 5031 5.651139 ACGGTTCTACTATCAGTTCTAGCAA 59.349 40.000 0.00 0.00 0.00 3.91
2056 5032 6.152323 ACGGTTCTACTATCAGTTCTAGCAAA 59.848 38.462 0.00 0.00 0.00 3.68
2057 5033 7.147880 ACGGTTCTACTATCAGTTCTAGCAAAT 60.148 37.037 0.00 0.00 0.00 2.32
2058 5034 7.707035 CGGTTCTACTATCAGTTCTAGCAAATT 59.293 37.037 0.00 0.00 0.00 1.82
2059 5035 9.384764 GGTTCTACTATCAGTTCTAGCAAATTT 57.615 33.333 0.00 0.00 0.00 1.82
2062 5038 9.751542 TCTACTATCAGTTCTAGCAAATTTAGC 57.248 33.333 0.00 0.00 0.00 3.09
2063 5039 9.757227 CTACTATCAGTTCTAGCAAATTTAGCT 57.243 33.333 15.97 15.97 45.77 3.32
2075 5051 7.709149 AGCAAATTTAGCTAGGAAATCACTT 57.291 32.000 11.76 0.00 41.32 3.16
2076 5052 8.807948 AGCAAATTTAGCTAGGAAATCACTTA 57.192 30.769 11.76 0.00 41.32 2.24
2077 5053 8.678199 AGCAAATTTAGCTAGGAAATCACTTAC 58.322 33.333 11.76 0.00 41.32 2.34
2078 5054 8.458843 GCAAATTTAGCTAGGAAATCACTTACA 58.541 33.333 0.00 0.00 0.00 2.41
2079 5055 9.774742 CAAATTTAGCTAGGAAATCACTTACAC 57.225 33.333 0.00 0.00 0.00 2.90
2080 5056 9.515226 AAATTTAGCTAGGAAATCACTTACACA 57.485 29.630 0.00 0.00 0.00 3.72
2081 5057 8.723942 ATTTAGCTAGGAAATCACTTACACAG 57.276 34.615 0.00 0.00 0.00 3.66
2082 5058 5.746990 AGCTAGGAAATCACTTACACAGT 57.253 39.130 0.00 0.00 35.35 3.55
2083 5059 6.115448 AGCTAGGAAATCACTTACACAGTT 57.885 37.500 0.00 0.00 30.92 3.16
2084 5060 6.166982 AGCTAGGAAATCACTTACACAGTTC 58.833 40.000 0.00 0.00 30.92 3.01
2085 5061 6.014156 AGCTAGGAAATCACTTACACAGTTCT 60.014 38.462 0.00 0.00 30.92 3.01
2086 5062 6.091441 GCTAGGAAATCACTTACACAGTTCTG 59.909 42.308 0.00 0.00 30.92 3.02
2087 5063 6.174720 AGGAAATCACTTACACAGTTCTGA 57.825 37.500 6.83 0.00 30.92 3.27
2088 5064 5.992217 AGGAAATCACTTACACAGTTCTGAC 59.008 40.000 6.83 0.00 30.92 3.51
2089 5065 5.179555 GGAAATCACTTACACAGTTCTGACC 59.820 44.000 6.83 0.00 30.92 4.02
2090 5066 4.955811 ATCACTTACACAGTTCTGACCA 57.044 40.909 6.83 0.00 30.92 4.02
2091 5067 4.054780 TCACTTACACAGTTCTGACCAC 57.945 45.455 6.83 0.00 30.92 4.16
2092 5068 2.794910 CACTTACACAGTTCTGACCACG 59.205 50.000 6.83 0.00 30.92 4.94
2093 5069 2.691526 ACTTACACAGTTCTGACCACGA 59.308 45.455 6.83 0.00 27.32 4.35
2094 5070 3.321111 ACTTACACAGTTCTGACCACGAT 59.679 43.478 6.83 0.00 27.32 3.73
2095 5071 2.910688 ACACAGTTCTGACCACGATT 57.089 45.000 6.83 0.00 0.00 3.34
2096 5072 2.483876 ACACAGTTCTGACCACGATTG 58.516 47.619 6.83 0.00 0.00 2.67
2097 5073 2.102420 ACACAGTTCTGACCACGATTGA 59.898 45.455 6.83 0.00 0.00 2.57
2098 5074 3.244215 ACACAGTTCTGACCACGATTGAT 60.244 43.478 6.83 0.00 0.00 2.57
2099 5075 4.021456 ACACAGTTCTGACCACGATTGATA 60.021 41.667 6.83 0.00 0.00 2.15
2100 5076 5.111989 CACAGTTCTGACCACGATTGATAT 58.888 41.667 6.83 0.00 0.00 1.63
2101 5077 5.006068 CACAGTTCTGACCACGATTGATATG 59.994 44.000 6.83 0.00 0.00 1.78
2102 5078 5.105351 ACAGTTCTGACCACGATTGATATGA 60.105 40.000 6.83 0.00 0.00 2.15
2103 5079 5.461407 CAGTTCTGACCACGATTGATATGAG 59.539 44.000 0.00 0.00 0.00 2.90
2104 5080 5.127845 AGTTCTGACCACGATTGATATGAGT 59.872 40.000 0.00 0.00 0.00 3.41
2105 5081 6.321435 AGTTCTGACCACGATTGATATGAGTA 59.679 38.462 0.00 0.00 0.00 2.59
2106 5082 6.709018 TCTGACCACGATTGATATGAGTAA 57.291 37.500 0.00 0.00 0.00 2.24
2107 5083 7.290110 TCTGACCACGATTGATATGAGTAAT 57.710 36.000 0.00 0.00 0.00 1.89
2108 5084 8.404107 TCTGACCACGATTGATATGAGTAATA 57.596 34.615 0.00 0.00 0.00 0.98
2109 5085 8.297426 TCTGACCACGATTGATATGAGTAATAC 58.703 37.037 0.00 0.00 0.00 1.89
2110 5086 7.947282 TGACCACGATTGATATGAGTAATACA 58.053 34.615 0.00 0.00 0.00 2.29
2111 5087 8.417884 TGACCACGATTGATATGAGTAATACAA 58.582 33.333 0.00 0.00 0.00 2.41
2112 5088 8.818141 ACCACGATTGATATGAGTAATACAAG 57.182 34.615 0.00 0.00 0.00 3.16
2113 5089 8.421784 ACCACGATTGATATGAGTAATACAAGT 58.578 33.333 0.00 0.00 0.00 3.16
2114 5090 8.916654 CCACGATTGATATGAGTAATACAAGTC 58.083 37.037 0.00 0.00 0.00 3.01
2115 5091 9.463443 CACGATTGATATGAGTAATACAAGTCA 57.537 33.333 0.00 0.00 33.47 3.41
2125 5101 8.502105 TGAGTAATACAAGTCATACGAAGAGA 57.498 34.615 0.00 0.00 0.00 3.10
2126 5102 8.396390 TGAGTAATACAAGTCATACGAAGAGAC 58.604 37.037 0.00 0.00 0.00 3.36
2127 5103 8.508883 AGTAATACAAGTCATACGAAGAGACT 57.491 34.615 0.00 0.00 43.98 3.24
2129 5105 9.224058 GTAATACAAGTCATACGAAGAGACTTC 57.776 37.037 11.99 0.00 46.47 3.01
2130 5106 5.707242 ACAAGTCATACGAAGAGACTTCA 57.293 39.130 11.20 0.00 46.47 3.02
2131 5107 6.085555 ACAAGTCATACGAAGAGACTTCAA 57.914 37.500 11.20 0.54 46.47 2.69
2132 5108 6.513180 ACAAGTCATACGAAGAGACTTCAAA 58.487 36.000 11.20 0.23 46.47 2.69
2133 5109 7.155328 ACAAGTCATACGAAGAGACTTCAAAT 58.845 34.615 11.20 2.27 46.47 2.32
2134 5110 7.116948 ACAAGTCATACGAAGAGACTTCAAATG 59.883 37.037 11.20 12.03 46.47 2.32
2135 5111 5.578727 AGTCATACGAAGAGACTTCAAATGC 59.421 40.000 11.20 9.23 39.45 3.56
2136 5112 5.348724 GTCATACGAAGAGACTTCAAATGCA 59.651 40.000 11.20 0.00 0.00 3.96
2137 5113 6.036517 GTCATACGAAGAGACTTCAAATGCAT 59.963 38.462 11.20 0.00 0.00 3.96
2138 5114 4.675190 ACGAAGAGACTTCAAATGCATG 57.325 40.909 0.00 0.00 0.00 4.06
2139 5115 4.318332 ACGAAGAGACTTCAAATGCATGA 58.682 39.130 0.00 0.00 0.00 3.07
2140 5116 4.940046 ACGAAGAGACTTCAAATGCATGAT 59.060 37.500 0.00 0.00 0.00 2.45
2141 5117 5.064452 ACGAAGAGACTTCAAATGCATGATC 59.936 40.000 0.00 0.00 0.00 2.92
2142 5118 5.293814 CGAAGAGACTTCAAATGCATGATCT 59.706 40.000 0.00 0.00 0.00 2.75
2143 5119 6.509837 CGAAGAGACTTCAAATGCATGATCTC 60.510 42.308 0.00 6.40 36.43 2.75
2144 5120 5.124645 AGAGACTTCAAATGCATGATCTCC 58.875 41.667 13.61 2.21 36.66 3.71
2145 5121 5.104444 AGAGACTTCAAATGCATGATCTCCT 60.104 40.000 13.61 2.63 36.66 3.69
2146 5122 4.882427 AGACTTCAAATGCATGATCTCCTG 59.118 41.667 0.00 0.00 0.00 3.86
2147 5123 3.380637 ACTTCAAATGCATGATCTCCTGC 59.619 43.478 0.00 8.09 38.87 4.85
2150 5126 4.970621 TGCATGATCTCCTGCACC 57.029 55.556 12.24 0.00 43.11 5.01
2151 5127 1.992844 TGCATGATCTCCTGCACCA 59.007 52.632 12.24 0.00 43.11 4.17
2152 5128 0.107361 TGCATGATCTCCTGCACCAG 60.107 55.000 12.24 0.00 43.11 4.00
2153 5129 1.445716 GCATGATCTCCTGCACCAGC 61.446 60.000 0.00 0.00 38.28 4.85
2154 5130 1.145598 ATGATCTCCTGCACCAGCG 59.854 57.895 0.00 0.00 46.23 5.18
2155 5131 2.894387 GATCTCCTGCACCAGCGC 60.894 66.667 0.00 0.00 46.23 5.92
2156 5132 4.479993 ATCTCCTGCACCAGCGCC 62.480 66.667 2.29 0.00 46.23 6.53
2163 5139 3.809775 GCACCAGCGCCGCATAAA 61.810 61.111 13.36 0.00 0.00 1.40
2164 5140 2.100216 CACCAGCGCCGCATAAAC 59.900 61.111 13.36 0.00 0.00 2.01
2165 5141 2.359354 ACCAGCGCCGCATAAACA 60.359 55.556 13.36 0.00 0.00 2.83
2166 5142 2.398554 ACCAGCGCCGCATAAACAG 61.399 57.895 13.36 0.00 0.00 3.16
2167 5143 2.106074 CCAGCGCCGCATAAACAGA 61.106 57.895 13.36 0.00 0.00 3.41
2168 5144 1.060937 CAGCGCCGCATAAACAGAC 59.939 57.895 13.36 0.00 0.00 3.51
2169 5145 2.106683 AGCGCCGCATAAACAGACC 61.107 57.895 13.36 0.00 0.00 3.85
2170 5146 2.106683 GCGCCGCATAAACAGACCT 61.107 57.895 3.15 0.00 0.00 3.85
2171 5147 1.715585 CGCCGCATAAACAGACCTG 59.284 57.895 0.00 0.00 0.00 4.00
2181 5157 3.329300 ACAGACCTGTTCATGCCAC 57.671 52.632 0.00 0.00 41.83 5.01
2182 5158 0.767375 ACAGACCTGTTCATGCCACT 59.233 50.000 0.00 0.00 41.83 4.00
2183 5159 1.162698 CAGACCTGTTCATGCCACTG 58.837 55.000 0.00 0.00 0.00 3.66
2184 5160 0.767375 AGACCTGTTCATGCCACTGT 59.233 50.000 0.00 0.00 0.00 3.55
2185 5161 1.160137 GACCTGTTCATGCCACTGTC 58.840 55.000 0.00 0.00 0.00 3.51
2186 5162 0.473755 ACCTGTTCATGCCACTGTCA 59.526 50.000 0.00 0.00 0.00 3.58
2187 5163 1.074405 ACCTGTTCATGCCACTGTCAT 59.926 47.619 0.00 0.00 0.00 3.06
2188 5164 2.165167 CCTGTTCATGCCACTGTCATT 58.835 47.619 0.00 0.00 0.00 2.57
2189 5165 2.163010 CCTGTTCATGCCACTGTCATTC 59.837 50.000 0.00 0.00 0.00 2.67
2190 5166 2.815503 CTGTTCATGCCACTGTCATTCA 59.184 45.455 0.00 0.00 0.00 2.57
2191 5167 3.220940 TGTTCATGCCACTGTCATTCAA 58.779 40.909 0.00 0.00 0.00 2.69
2192 5168 3.004629 TGTTCATGCCACTGTCATTCAAC 59.995 43.478 0.00 0.00 0.00 3.18
2193 5169 2.861274 TCATGCCACTGTCATTCAACA 58.139 42.857 0.00 0.00 0.00 3.33
2194 5170 3.423749 TCATGCCACTGTCATTCAACAT 58.576 40.909 0.00 0.00 0.00 2.71
2195 5171 3.191791 TCATGCCACTGTCATTCAACATG 59.808 43.478 0.00 0.00 35.99 3.21
2196 5172 2.585330 TGCCACTGTCATTCAACATGT 58.415 42.857 0.00 0.00 0.00 3.21
2197 5173 2.957680 TGCCACTGTCATTCAACATGTT 59.042 40.909 4.92 4.92 0.00 2.71
2198 5174 3.004629 TGCCACTGTCATTCAACATGTTC 59.995 43.478 8.48 0.00 0.00 3.18
2199 5175 3.004629 GCCACTGTCATTCAACATGTTCA 59.995 43.478 8.48 0.00 0.00 3.18
2200 5176 4.539870 CCACTGTCATTCAACATGTTCAC 58.460 43.478 8.48 1.54 0.00 3.18
2201 5177 4.539870 CACTGTCATTCAACATGTTCACC 58.460 43.478 8.48 0.00 0.00 4.02
2202 5178 3.250762 ACTGTCATTCAACATGTTCACCG 59.749 43.478 8.48 0.00 0.00 4.94
2203 5179 2.031245 TGTCATTCAACATGTTCACCGC 60.031 45.455 8.48 0.00 0.00 5.68
2204 5180 2.226437 GTCATTCAACATGTTCACCGCT 59.774 45.455 8.48 0.00 0.00 5.52
2205 5181 3.435327 GTCATTCAACATGTTCACCGCTA 59.565 43.478 8.48 0.00 0.00 4.26
2206 5182 3.684305 TCATTCAACATGTTCACCGCTAG 59.316 43.478 8.48 0.00 0.00 3.42
2207 5183 2.831685 TCAACATGTTCACCGCTAGT 57.168 45.000 8.48 0.00 0.00 2.57
2208 5184 3.945981 TCAACATGTTCACCGCTAGTA 57.054 42.857 8.48 0.00 0.00 1.82
2209 5185 4.465632 TCAACATGTTCACCGCTAGTAT 57.534 40.909 8.48 0.00 0.00 2.12
2210 5186 4.430007 TCAACATGTTCACCGCTAGTATC 58.570 43.478 8.48 0.00 0.00 2.24
2211 5187 3.079960 ACATGTTCACCGCTAGTATCG 57.920 47.619 0.00 0.00 0.00 2.92
2212 5188 2.686405 ACATGTTCACCGCTAGTATCGA 59.314 45.455 0.00 0.00 0.00 3.59
2213 5189 3.129813 ACATGTTCACCGCTAGTATCGAA 59.870 43.478 0.00 0.00 0.00 3.71
2214 5190 4.202121 ACATGTTCACCGCTAGTATCGAAT 60.202 41.667 0.00 0.00 0.00 3.34
2215 5191 3.961182 TGTTCACCGCTAGTATCGAATC 58.039 45.455 0.00 0.00 0.00 2.52
2216 5192 3.243301 TGTTCACCGCTAGTATCGAATCC 60.243 47.826 0.00 0.00 0.00 3.01
2217 5193 2.578786 TCACCGCTAGTATCGAATCCA 58.421 47.619 0.00 0.00 0.00 3.41
2218 5194 3.154710 TCACCGCTAGTATCGAATCCAT 58.845 45.455 0.00 0.00 0.00 3.41
2219 5195 3.190744 TCACCGCTAGTATCGAATCCATC 59.809 47.826 0.00 0.00 0.00 3.51
2220 5196 3.191581 CACCGCTAGTATCGAATCCATCT 59.808 47.826 0.00 0.00 0.00 2.90
2221 5197 3.440872 ACCGCTAGTATCGAATCCATCTC 59.559 47.826 0.00 0.00 0.00 2.75
2222 5198 3.440522 CCGCTAGTATCGAATCCATCTCA 59.559 47.826 0.00 0.00 0.00 3.27
2223 5199 4.082733 CCGCTAGTATCGAATCCATCTCAA 60.083 45.833 0.00 0.00 0.00 3.02
2224 5200 5.393569 CCGCTAGTATCGAATCCATCTCAAT 60.394 44.000 0.00 0.00 0.00 2.57
2225 5201 5.514559 CGCTAGTATCGAATCCATCTCAATG 59.485 44.000 0.00 0.00 0.00 2.82
2226 5202 5.290643 GCTAGTATCGAATCCATCTCAATGC 59.709 44.000 0.00 0.00 0.00 3.56
2227 5203 5.219343 AGTATCGAATCCATCTCAATGCA 57.781 39.130 0.00 0.00 0.00 3.96
2228 5204 5.614308 AGTATCGAATCCATCTCAATGCAA 58.386 37.500 0.00 0.00 0.00 4.08
2229 5205 6.057533 AGTATCGAATCCATCTCAATGCAAA 58.942 36.000 0.00 0.00 0.00 3.68
2230 5206 6.713903 AGTATCGAATCCATCTCAATGCAAAT 59.286 34.615 0.00 0.00 0.00 2.32
2231 5207 5.840243 TCGAATCCATCTCAATGCAAATT 57.160 34.783 0.00 0.00 0.00 1.82
2232 5208 5.584442 TCGAATCCATCTCAATGCAAATTG 58.416 37.500 0.00 0.00 0.00 2.32
2233 5209 4.743151 CGAATCCATCTCAATGCAAATTGG 59.257 41.667 0.00 0.00 32.65 3.16
2234 5210 4.682778 ATCCATCTCAATGCAAATTGGG 57.317 40.909 0.00 0.00 33.42 4.12
2235 5211 3.710724 TCCATCTCAATGCAAATTGGGA 58.289 40.909 5.11 5.11 44.25 4.37
2236 5212 3.702548 TCCATCTCAATGCAAATTGGGAG 59.297 43.478 8.50 1.97 43.48 4.30
2237 5213 3.702548 CCATCTCAATGCAAATTGGGAGA 59.297 43.478 8.50 6.75 43.48 3.71
2238 5214 4.344102 CCATCTCAATGCAAATTGGGAGAT 59.656 41.667 8.50 8.46 43.48 2.75
2239 5215 5.509163 CCATCTCAATGCAAATTGGGAGATC 60.509 44.000 8.50 0.00 43.48 2.75
2240 5216 3.956199 TCTCAATGCAAATTGGGAGATCC 59.044 43.478 0.00 0.00 36.21 3.36
2241 5217 2.689471 TCAATGCAAATTGGGAGATCCG 59.311 45.455 0.00 0.00 38.76 4.18
2242 5218 2.689471 CAATGCAAATTGGGAGATCCGA 59.311 45.455 0.00 0.00 38.76 4.55
2243 5219 2.505650 TGCAAATTGGGAGATCCGAA 57.494 45.000 0.00 0.00 38.11 4.30
2244 5220 2.091541 TGCAAATTGGGAGATCCGAAC 58.908 47.619 0.00 0.00 36.55 3.95
2245 5221 1.064060 GCAAATTGGGAGATCCGAACG 59.936 52.381 0.00 0.00 36.55 3.95
2246 5222 2.356135 CAAATTGGGAGATCCGAACGT 58.644 47.619 0.00 0.00 36.55 3.99
2247 5223 2.747446 CAAATTGGGAGATCCGAACGTT 59.253 45.455 0.00 0.00 36.55 3.99
2248 5224 2.024176 ATTGGGAGATCCGAACGTTG 57.976 50.000 5.00 0.00 36.55 4.10
2249 5225 0.970640 TTGGGAGATCCGAACGTTGA 59.029 50.000 5.00 0.00 38.76 3.18
2250 5226 0.970640 TGGGAGATCCGAACGTTGAA 59.029 50.000 5.00 0.00 38.76 2.69
2251 5227 1.553248 TGGGAGATCCGAACGTTGAAT 59.447 47.619 5.00 0.00 38.76 2.57
2252 5228 1.933853 GGGAGATCCGAACGTTGAATG 59.066 52.381 5.00 0.00 36.71 2.67
2253 5229 1.933853 GGAGATCCGAACGTTGAATGG 59.066 52.381 5.00 2.00 0.00 3.16
2254 5230 1.327764 GAGATCCGAACGTTGAATGGC 59.672 52.381 5.00 0.00 0.00 4.40
2255 5231 1.066143 AGATCCGAACGTTGAATGGCT 60.066 47.619 5.00 0.00 0.00 4.75
2256 5232 2.167693 AGATCCGAACGTTGAATGGCTA 59.832 45.455 5.00 0.00 0.00 3.93
2257 5233 2.004583 TCCGAACGTTGAATGGCTAG 57.995 50.000 5.00 0.00 0.00 3.42
2258 5234 1.546923 TCCGAACGTTGAATGGCTAGA 59.453 47.619 5.00 0.00 0.00 2.43
2259 5235 1.927174 CCGAACGTTGAATGGCTAGAG 59.073 52.381 5.00 0.00 0.00 2.43
2260 5236 2.416836 CCGAACGTTGAATGGCTAGAGA 60.417 50.000 5.00 0.00 0.00 3.10
2261 5237 3.448686 CGAACGTTGAATGGCTAGAGAT 58.551 45.455 5.00 0.00 0.00 2.75
2262 5238 4.499188 CCGAACGTTGAATGGCTAGAGATA 60.499 45.833 5.00 0.00 0.00 1.98
2263 5239 5.041287 CGAACGTTGAATGGCTAGAGATAA 58.959 41.667 5.00 0.00 0.00 1.75
2264 5240 5.518847 CGAACGTTGAATGGCTAGAGATAAA 59.481 40.000 5.00 0.00 0.00 1.40
2265 5241 6.508088 CGAACGTTGAATGGCTAGAGATAAAC 60.508 42.308 5.00 0.00 0.00 2.01
2266 5242 5.116882 ACGTTGAATGGCTAGAGATAAACC 58.883 41.667 0.00 0.00 0.00 3.27
2267 5243 4.511826 CGTTGAATGGCTAGAGATAAACCC 59.488 45.833 0.00 0.00 0.00 4.11
2268 5244 5.685075 CGTTGAATGGCTAGAGATAAACCCT 60.685 44.000 0.00 0.00 0.00 4.34
2269 5245 5.552870 TGAATGGCTAGAGATAAACCCTC 57.447 43.478 0.00 0.00 0.00 4.30
2270 5246 4.348168 TGAATGGCTAGAGATAAACCCTCC 59.652 45.833 0.00 0.00 0.00 4.30
2271 5247 3.414759 TGGCTAGAGATAAACCCTCCA 57.585 47.619 0.00 0.00 0.00 3.86
2272 5248 3.941629 TGGCTAGAGATAAACCCTCCAT 58.058 45.455 0.00 0.00 0.00 3.41
2273 5249 3.648067 TGGCTAGAGATAAACCCTCCATG 59.352 47.826 0.00 0.00 0.00 3.66
2274 5250 3.558109 GGCTAGAGATAAACCCTCCATGC 60.558 52.174 0.00 0.00 0.00 4.06
2275 5251 3.071602 GCTAGAGATAAACCCTCCATGCA 59.928 47.826 0.00 0.00 0.00 3.96
2276 5252 4.263243 GCTAGAGATAAACCCTCCATGCAT 60.263 45.833 0.00 0.00 0.00 3.96
2277 5253 4.096190 AGAGATAAACCCTCCATGCATG 57.904 45.455 20.19 20.19 0.00 4.06
2278 5254 2.555757 GAGATAAACCCTCCATGCATGC 59.444 50.000 21.69 11.82 0.00 4.06
2279 5255 2.091720 AGATAAACCCTCCATGCATGCA 60.092 45.455 25.04 25.04 0.00 3.96
2280 5256 1.473258 TAAACCCTCCATGCATGCAC 58.527 50.000 25.37 0.00 0.00 4.57
2281 5257 0.251922 AAACCCTCCATGCATGCACT 60.252 50.000 25.37 9.74 0.00 4.40
2282 5258 0.251922 AACCCTCCATGCATGCACTT 60.252 50.000 25.37 4.95 0.00 3.16
2283 5259 0.625316 ACCCTCCATGCATGCACTTA 59.375 50.000 25.37 10.05 0.00 2.24
2284 5260 1.216175 ACCCTCCATGCATGCACTTAT 59.784 47.619 25.37 3.57 0.00 1.73
2285 5261 2.313317 CCCTCCATGCATGCACTTATT 58.687 47.619 25.37 3.10 0.00 1.40
2286 5262 2.696707 CCCTCCATGCATGCACTTATTT 59.303 45.455 25.37 2.19 0.00 1.40
2287 5263 3.133362 CCCTCCATGCATGCACTTATTTT 59.867 43.478 25.37 1.29 0.00 1.82
2288 5264 4.383335 CCCTCCATGCATGCACTTATTTTT 60.383 41.667 25.37 0.38 0.00 1.94
2289 5265 4.807304 CCTCCATGCATGCACTTATTTTTC 59.193 41.667 25.37 0.00 0.00 2.29
2290 5266 5.394883 CCTCCATGCATGCACTTATTTTTCT 60.395 40.000 25.37 0.00 0.00 2.52
2291 5267 5.412640 TCCATGCATGCACTTATTTTTCTG 58.587 37.500 25.37 12.97 0.00 3.02
2292 5268 4.033587 CCATGCATGCACTTATTTTTCTGC 59.966 41.667 25.37 0.00 0.00 4.26
2293 5269 4.524316 TGCATGCACTTATTTTTCTGCT 57.476 36.364 18.46 0.00 0.00 4.24
2294 5270 4.885413 TGCATGCACTTATTTTTCTGCTT 58.115 34.783 18.46 0.00 0.00 3.91
2295 5271 4.925054 TGCATGCACTTATTTTTCTGCTTC 59.075 37.500 18.46 0.00 0.00 3.86
2296 5272 4.328169 GCATGCACTTATTTTTCTGCTTCC 59.672 41.667 14.21 0.00 0.00 3.46
2297 5273 5.472148 CATGCACTTATTTTTCTGCTTCCA 58.528 37.500 0.00 0.00 0.00 3.53
2298 5274 5.528043 TGCACTTATTTTTCTGCTTCCAA 57.472 34.783 0.00 0.00 0.00 3.53
2299 5275 5.531634 TGCACTTATTTTTCTGCTTCCAAG 58.468 37.500 0.00 0.00 0.00 3.61
2300 5276 4.925646 GCACTTATTTTTCTGCTTCCAAGG 59.074 41.667 0.00 0.00 0.00 3.61
2301 5277 4.925646 CACTTATTTTTCTGCTTCCAAGGC 59.074 41.667 0.00 0.00 0.00 4.35
2302 5278 4.588528 ACTTATTTTTCTGCTTCCAAGGCA 59.411 37.500 0.00 0.00 38.10 4.75
2303 5279 5.246883 ACTTATTTTTCTGCTTCCAAGGCAT 59.753 36.000 0.00 0.00 39.07 4.40
2304 5280 3.665745 TTTTTCTGCTTCCAAGGCATC 57.334 42.857 0.00 0.00 39.07 3.91
2305 5281 2.592102 TTTCTGCTTCCAAGGCATCT 57.408 45.000 0.00 0.00 39.07 2.90
2306 5282 2.119801 TTCTGCTTCCAAGGCATCTC 57.880 50.000 0.00 0.00 39.07 2.75
2307 5283 0.107993 TCTGCTTCCAAGGCATCTCG 60.108 55.000 0.00 0.00 39.07 4.04
2308 5284 0.107993 CTGCTTCCAAGGCATCTCGA 60.108 55.000 0.00 0.00 39.07 4.04
2309 5285 0.391661 TGCTTCCAAGGCATCTCGAC 60.392 55.000 0.00 0.00 34.56 4.20
2310 5286 0.391661 GCTTCCAAGGCATCTCGACA 60.392 55.000 0.00 0.00 0.00 4.35
2311 5287 1.745141 GCTTCCAAGGCATCTCGACAT 60.745 52.381 0.00 0.00 0.00 3.06
2312 5288 1.938577 CTTCCAAGGCATCTCGACATG 59.061 52.381 0.00 0.00 0.00 3.21
2313 5289 1.194218 TCCAAGGCATCTCGACATGA 58.806 50.000 4.70 0.00 0.00 3.07
2314 5290 1.137675 TCCAAGGCATCTCGACATGAG 59.862 52.381 4.70 0.00 46.72 2.90
2325 5301 2.808919 TCGACATGAGAAGAGTTCCCT 58.191 47.619 0.00 0.00 0.00 4.20
2326 5302 2.493675 TCGACATGAGAAGAGTTCCCTG 59.506 50.000 0.00 0.00 0.00 4.45
2327 5303 2.626840 GACATGAGAAGAGTTCCCTGC 58.373 52.381 0.00 0.00 0.00 4.85
2328 5304 1.980765 ACATGAGAAGAGTTCCCTGCA 59.019 47.619 0.00 0.00 0.00 4.41
2329 5305 2.027377 ACATGAGAAGAGTTCCCTGCAG 60.027 50.000 6.78 6.78 0.00 4.41
2330 5306 0.979665 TGAGAAGAGTTCCCTGCAGG 59.020 55.000 26.87 26.87 0.00 4.85
2331 5307 1.270907 GAGAAGAGTTCCCTGCAGGA 58.729 55.000 34.91 17.23 45.68 3.86
2332 5308 1.836802 GAGAAGAGTTCCCTGCAGGAT 59.163 52.381 34.91 16.49 46.94 3.24
2333 5309 1.558756 AGAAGAGTTCCCTGCAGGATG 59.441 52.381 34.91 18.52 46.94 3.51
2334 5310 1.556911 GAAGAGTTCCCTGCAGGATGA 59.443 52.381 34.91 20.69 46.94 2.92
2335 5311 1.661463 AGAGTTCCCTGCAGGATGAA 58.339 50.000 34.91 25.18 46.94 2.57
2336 5312 2.203584 AGAGTTCCCTGCAGGATGAAT 58.796 47.619 34.91 17.70 46.94 2.57
2337 5313 3.387962 AGAGTTCCCTGCAGGATGAATA 58.612 45.455 34.91 6.81 46.94 1.75
2338 5314 3.390639 AGAGTTCCCTGCAGGATGAATAG 59.609 47.826 34.91 15.38 46.94 1.73
2339 5315 3.387962 AGTTCCCTGCAGGATGAATAGA 58.612 45.455 34.91 17.59 46.94 1.98
2340 5316 3.979347 AGTTCCCTGCAGGATGAATAGAT 59.021 43.478 34.91 13.41 46.94 1.98
2341 5317 4.070716 GTTCCCTGCAGGATGAATAGATG 58.929 47.826 34.91 13.04 46.94 2.90
2342 5318 3.590714 TCCCTGCAGGATGAATAGATGA 58.409 45.455 34.91 15.29 40.93 2.92
2343 5319 4.173594 TCCCTGCAGGATGAATAGATGAT 58.826 43.478 34.91 0.00 40.93 2.45
2344 5320 5.344566 TCCCTGCAGGATGAATAGATGATA 58.655 41.667 34.91 0.00 40.93 2.15
2345 5321 5.968784 TCCCTGCAGGATGAATAGATGATAT 59.031 40.000 34.91 0.00 40.93 1.63
2346 5322 6.446110 TCCCTGCAGGATGAATAGATGATATT 59.554 38.462 34.91 0.00 40.93 1.28
2347 5323 6.542735 CCCTGCAGGATGAATAGATGATATTG 59.457 42.308 34.91 6.44 39.69 1.90
2348 5324 6.038382 CCTGCAGGATGAATAGATGATATTGC 59.962 42.308 29.88 0.00 39.69 3.56
2349 5325 5.884232 TGCAGGATGAATAGATGATATTGCC 59.116 40.000 0.00 0.00 39.69 4.52
2350 5326 5.007430 GCAGGATGAATAGATGATATTGCCG 59.993 44.000 0.00 0.00 39.69 5.69
2351 5327 5.007430 CAGGATGAATAGATGATATTGCCGC 59.993 44.000 0.00 0.00 39.69 6.53
2352 5328 4.025396 GGATGAATAGATGATATTGCCGCG 60.025 45.833 0.00 0.00 0.00 6.46
2353 5329 4.186856 TGAATAGATGATATTGCCGCGA 57.813 40.909 8.23 0.00 0.00 5.87
2354 5330 4.758688 TGAATAGATGATATTGCCGCGAT 58.241 39.130 8.23 0.00 0.00 4.58
2355 5331 4.805719 TGAATAGATGATATTGCCGCGATC 59.194 41.667 8.23 2.07 0.00 3.69
2356 5332 2.749280 AGATGATATTGCCGCGATCA 57.251 45.000 8.23 9.04 34.25 2.92
2357 5333 3.257469 AGATGATATTGCCGCGATCAT 57.743 42.857 17.18 17.18 41.82 2.45
2358 5334 3.582444 GATGATATTGCCGCGATCATC 57.418 47.619 23.52 23.52 45.12 2.92
2359 5335 2.453983 TGATATTGCCGCGATCATCA 57.546 45.000 8.23 6.21 0.00 3.07
2360 5336 2.068519 TGATATTGCCGCGATCATCAC 58.931 47.619 8.23 0.00 0.00 3.06
2361 5337 1.059692 GATATTGCCGCGATCATCACG 59.940 52.381 8.23 0.00 0.00 4.35
2362 5338 0.031449 TATTGCCGCGATCATCACGA 59.969 50.000 8.23 0.00 0.00 4.35
2363 5339 0.809636 ATTGCCGCGATCATCACGAA 60.810 50.000 8.23 0.00 0.00 3.85
2364 5340 1.420641 TTGCCGCGATCATCACGAAG 61.421 55.000 8.23 0.00 0.00 3.79
2365 5341 2.923854 CCGCGATCATCACGAAGC 59.076 61.111 8.23 0.00 0.00 3.86
2366 5342 1.878069 CCGCGATCATCACGAAGCA 60.878 57.895 8.23 0.00 32.68 3.91
2367 5343 1.270968 CGCGATCATCACGAAGCAC 59.729 57.895 0.00 0.00 32.68 4.40
2368 5344 1.638467 GCGATCATCACGAAGCACC 59.362 57.895 0.00 0.00 33.18 5.01
2369 5345 1.083806 GCGATCATCACGAAGCACCA 61.084 55.000 0.00 0.00 33.18 4.17
2370 5346 1.575244 CGATCATCACGAAGCACCAT 58.425 50.000 0.00 0.00 0.00 3.55
2371 5347 2.742774 CGATCATCACGAAGCACCATA 58.257 47.619 0.00 0.00 0.00 2.74
2372 5348 2.472861 CGATCATCACGAAGCACCATAC 59.527 50.000 0.00 0.00 0.00 2.39
2373 5349 2.309528 TCATCACGAAGCACCATACC 57.690 50.000 0.00 0.00 0.00 2.73
2374 5350 1.552792 TCATCACGAAGCACCATACCA 59.447 47.619 0.00 0.00 0.00 3.25
2375 5351 1.935873 CATCACGAAGCACCATACCAG 59.064 52.381 0.00 0.00 0.00 4.00
2376 5352 0.391130 TCACGAAGCACCATACCAGC 60.391 55.000 0.00 0.00 0.00 4.85
2377 5353 0.391661 CACGAAGCACCATACCAGCT 60.392 55.000 0.00 0.00 41.03 4.24
2378 5354 0.108138 ACGAAGCACCATACCAGCTC 60.108 55.000 0.00 0.00 37.70 4.09
2379 5355 0.811616 CGAAGCACCATACCAGCTCC 60.812 60.000 0.00 0.00 37.70 4.70
2380 5356 0.253044 GAAGCACCATACCAGCTCCA 59.747 55.000 0.00 0.00 37.70 3.86
2436 5412 8.141268 TCATTTGATTATGTACGAGTATGAGCA 58.859 33.333 0.00 0.00 0.00 4.26
2578 5554 2.664402 AGCAAGGTCCAGTGTTCAAT 57.336 45.000 0.00 0.00 0.00 2.57
2612 5592 5.882000 ACACAATCAAGAGCACATATTAGCA 59.118 36.000 0.00 0.00 0.00 3.49
2641 5621 0.820871 CTACCCTGAGCAGACTGGTC 59.179 60.000 24.56 24.56 44.54 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 7.500992 TCAGATTGCGAGAAAAACCTAGATAT 58.499 34.615 0.00 0.00 0.00 1.63
48 49 6.873997 TCAGATTGCGAGAAAAACCTAGATA 58.126 36.000 0.00 0.00 0.00 1.98
57 58 5.885230 ATGTTCATCAGATTGCGAGAAAA 57.115 34.783 0.00 0.00 0.00 2.29
63 64 6.488817 TGACATTTATGTTCATCAGATTGCG 58.511 36.000 0.00 0.00 41.95 4.85
67 68 8.756486 TCCATTGACATTTATGTTCATCAGAT 57.244 30.769 0.00 0.00 41.95 2.90
101 118 5.245075 CCTTGGTCTTTAATTAGGGCAACAA 59.755 40.000 0.00 0.00 39.74 2.83
106 123 3.296854 CCCCTTGGTCTTTAATTAGGGC 58.703 50.000 0.00 0.00 40.82 5.19
113 130 4.448054 CCCTAAACACCCCTTGGTCTTTAA 60.448 45.833 0.00 0.00 45.57 1.52
114 131 3.074836 CCCTAAACACCCCTTGGTCTTTA 59.925 47.826 0.00 0.00 45.57 1.85
115 132 2.158370 CCCTAAACACCCCTTGGTCTTT 60.158 50.000 0.00 0.00 45.57 2.52
116 133 1.427753 CCCTAAACACCCCTTGGTCTT 59.572 52.381 0.00 0.00 45.57 3.01
128 145 2.808933 CGAAGTCTTGCACCCCTAAACA 60.809 50.000 0.00 0.00 0.00 2.83
129 146 1.804748 CGAAGTCTTGCACCCCTAAAC 59.195 52.381 0.00 0.00 0.00 2.01
172 192 2.373169 TCAGACTTCAACTTGGGATGCT 59.627 45.455 0.00 0.00 0.00 3.79
173 193 2.746362 CTCAGACTTCAACTTGGGATGC 59.254 50.000 0.00 0.00 0.00 3.91
174 194 4.277515 TCTCAGACTTCAACTTGGGATG 57.722 45.455 0.00 0.00 0.00 3.51
192 3134 4.797743 AGCCCAAATTTCCCTAAGATCTC 58.202 43.478 0.00 0.00 0.00 2.75
198 3140 6.239743 CCAAAGTAAAGCCCAAATTTCCCTAA 60.240 38.462 0.00 0.00 0.00 2.69
201 3144 4.323417 CCAAAGTAAAGCCCAAATTTCCC 58.677 43.478 0.00 0.00 0.00 3.97
203 3146 3.751175 GCCCAAAGTAAAGCCCAAATTTC 59.249 43.478 0.00 0.00 0.00 2.17
319 3262 6.705302 TCCTCCTTGCATAGTAATGATCATC 58.295 40.000 9.06 0.00 34.84 2.92
326 3269 5.222007 CCAATCCTCCTCCTTGCATAGTAAT 60.222 44.000 0.00 0.00 0.00 1.89
560 3509 2.429767 CCTCGGCCTCTCTGCATCA 61.430 63.158 0.00 0.00 0.00 3.07
565 3514 0.760945 AATACCCCTCGGCCTCTCTG 60.761 60.000 0.00 0.00 0.00 3.35
566 3515 0.470268 GAATACCCCTCGGCCTCTCT 60.470 60.000 0.00 0.00 0.00 3.10
615 3565 8.409358 AGCACTAGTAATTTCCATTTTTGACT 57.591 30.769 0.00 0.00 0.00 3.41
625 3580 6.746120 TCGAGGAATAGCACTAGTAATTTCC 58.254 40.000 13.97 13.97 0.00 3.13
627 3582 7.868415 GTCATCGAGGAATAGCACTAGTAATTT 59.132 37.037 0.00 0.00 0.00 1.82
781 3736 1.264295 GACTACCTCGTTTCCTGGGT 58.736 55.000 0.00 0.00 36.02 4.51
903 3860 3.623453 GCAGCTTGTAGAAAGGAGGGAAT 60.623 47.826 0.00 0.00 0.00 3.01
912 3869 1.795768 CACGGAGCAGCTTGTAGAAA 58.204 50.000 0.00 0.00 0.00 2.52
969 3926 1.361668 CTTATGCCGAGCGCTTGTGT 61.362 55.000 22.94 10.82 38.78 3.72
992 3949 2.639327 GCTTTCGCCATGGTTGCCT 61.639 57.895 14.67 0.00 0.00 4.75
993 3950 2.125952 GCTTTCGCCATGGTTGCC 60.126 61.111 14.67 0.00 0.00 4.52
994 3951 1.734117 GTGCTTTCGCCATGGTTGC 60.734 57.895 14.67 11.02 34.43 4.17
1016 3975 4.755614 GCGCGAGGACGACGAACT 62.756 66.667 12.10 0.00 42.66 3.01
1380 4351 2.539142 CGTGGCGATACTGTACAGAGAC 60.539 54.545 29.30 18.08 0.00 3.36
1381 4352 1.669265 CGTGGCGATACTGTACAGAGA 59.331 52.381 29.30 16.27 0.00 3.10
1382 4353 1.400846 ACGTGGCGATACTGTACAGAG 59.599 52.381 29.30 16.68 0.00 3.35
1383 4354 1.399440 GACGTGGCGATACTGTACAGA 59.601 52.381 29.30 13.09 0.00 3.41
1384 4355 1.400846 AGACGTGGCGATACTGTACAG 59.599 52.381 21.44 21.44 0.00 2.74
1385 4356 1.399440 GAGACGTGGCGATACTGTACA 59.601 52.381 0.00 0.00 0.00 2.90
1386 4357 1.669779 AGAGACGTGGCGATACTGTAC 59.330 52.381 0.00 0.00 0.00 2.90
1387 4358 1.669265 CAGAGACGTGGCGATACTGTA 59.331 52.381 0.00 0.00 0.00 2.74
1388 4359 0.452184 CAGAGACGTGGCGATACTGT 59.548 55.000 0.00 0.00 0.00 3.55
1389 4360 0.733150 TCAGAGACGTGGCGATACTG 59.267 55.000 0.00 0.00 0.00 2.74
1390 4361 1.681538 ATCAGAGACGTGGCGATACT 58.318 50.000 0.00 0.00 0.00 2.12
1391 4362 2.493713 AATCAGAGACGTGGCGATAC 57.506 50.000 0.00 0.00 0.00 2.24
1392 4363 2.552743 CCTAATCAGAGACGTGGCGATA 59.447 50.000 0.00 0.00 0.00 2.92
1393 4364 1.338337 CCTAATCAGAGACGTGGCGAT 59.662 52.381 0.00 0.00 0.00 4.58
1394 4365 0.738975 CCTAATCAGAGACGTGGCGA 59.261 55.000 0.00 0.00 0.00 5.54
1395 4366 0.456221 ACCTAATCAGAGACGTGGCG 59.544 55.000 0.00 0.00 0.00 5.69
1555 4526 1.675641 ATGGTCGCAGAAAGTGGGC 60.676 57.895 0.00 0.00 39.69 5.36
1795 4770 5.109903 AGTTCTACCAAAGCAATACTAGCG 58.890 41.667 0.00 0.00 37.01 4.26
1876 4852 6.261603 TCTCATGGATCACATAACATTTGCTC 59.738 38.462 0.00 0.00 37.84 4.26
1887 4863 5.713389 ACATTGTTTGTCTCATGGATCACAT 59.287 36.000 0.00 0.00 34.88 3.21
1889 4865 5.633830 ACATTGTTTGTCTCATGGATCAC 57.366 39.130 0.00 0.00 30.89 3.06
1937 4913 9.228949 TGAGTAATATAAGTTTTTACCCGCAAA 57.771 29.630 0.00 0.00 0.00 3.68
1938 4914 8.789825 TGAGTAATATAAGTTTTTACCCGCAA 57.210 30.769 0.00 0.00 0.00 4.85
1939 4915 8.789825 TTGAGTAATATAAGTTTTTACCCGCA 57.210 30.769 0.00 0.00 0.00 5.69
1940 4916 9.494479 GTTTGAGTAATATAAGTTTTTACCCGC 57.506 33.333 0.00 0.00 0.00 6.13
1949 4925 9.444600 ACGGTTGATGTTTGAGTAATATAAGTT 57.555 29.630 0.00 0.00 0.00 2.66
1952 4928 9.872721 TGTACGGTTGATGTTTGAGTAATATAA 57.127 29.630 0.00 0.00 0.00 0.98
1953 4929 9.872721 TTGTACGGTTGATGTTTGAGTAATATA 57.127 29.630 0.00 0.00 0.00 0.86
1954 4930 8.780846 TTGTACGGTTGATGTTTGAGTAATAT 57.219 30.769 0.00 0.00 0.00 1.28
1955 4931 8.780846 ATTGTACGGTTGATGTTTGAGTAATA 57.219 30.769 0.00 0.00 0.00 0.98
1956 4932 7.148306 GGATTGTACGGTTGATGTTTGAGTAAT 60.148 37.037 0.00 0.00 0.00 1.89
1957 4933 6.148150 GGATTGTACGGTTGATGTTTGAGTAA 59.852 38.462 0.00 0.00 0.00 2.24
1958 4934 5.640357 GGATTGTACGGTTGATGTTTGAGTA 59.360 40.000 0.00 0.00 0.00 2.59
1959 4935 4.454504 GGATTGTACGGTTGATGTTTGAGT 59.545 41.667 0.00 0.00 0.00 3.41
1960 4936 4.695455 AGGATTGTACGGTTGATGTTTGAG 59.305 41.667 0.00 0.00 0.00 3.02
1961 4937 4.647611 AGGATTGTACGGTTGATGTTTGA 58.352 39.130 0.00 0.00 0.00 2.69
1962 4938 5.181245 AGAAGGATTGTACGGTTGATGTTTG 59.819 40.000 0.00 0.00 0.00 2.93
1963 4939 5.313712 AGAAGGATTGTACGGTTGATGTTT 58.686 37.500 0.00 0.00 0.00 2.83
1964 4940 4.906618 AGAAGGATTGTACGGTTGATGTT 58.093 39.130 0.00 0.00 0.00 2.71
1965 4941 4.553330 AGAAGGATTGTACGGTTGATGT 57.447 40.909 0.00 0.00 0.00 3.06
1966 4942 5.872617 TGTAAGAAGGATTGTACGGTTGATG 59.127 40.000 0.00 0.00 0.00 3.07
1967 4943 6.045072 TGTAAGAAGGATTGTACGGTTGAT 57.955 37.500 0.00 0.00 0.00 2.57
1968 4944 5.471556 TGTAAGAAGGATTGTACGGTTGA 57.528 39.130 0.00 0.00 0.00 3.18
1969 4945 7.548075 AGTTATGTAAGAAGGATTGTACGGTTG 59.452 37.037 0.00 0.00 0.00 3.77
1970 4946 7.618137 AGTTATGTAAGAAGGATTGTACGGTT 58.382 34.615 0.00 0.00 0.00 4.44
1971 4947 7.093640 TGAGTTATGTAAGAAGGATTGTACGGT 60.094 37.037 0.00 0.00 0.00 4.83
1972 4948 7.262772 TGAGTTATGTAAGAAGGATTGTACGG 58.737 38.462 0.00 0.00 0.00 4.02
1973 4949 8.697846 TTGAGTTATGTAAGAAGGATTGTACG 57.302 34.615 0.00 0.00 0.00 3.67
1976 4952 9.167311 GTCATTGAGTTATGTAAGAAGGATTGT 57.833 33.333 0.00 0.00 0.00 2.71
1977 4953 9.388506 AGTCATTGAGTTATGTAAGAAGGATTG 57.611 33.333 0.00 0.00 0.00 2.67
1978 4954 9.965902 AAGTCATTGAGTTATGTAAGAAGGATT 57.034 29.630 4.90 0.00 0.00 3.01
1979 4955 9.606631 GAAGTCATTGAGTTATGTAAGAAGGAT 57.393 33.333 6.72 0.00 0.00 3.24
1980 4956 8.816894 AGAAGTCATTGAGTTATGTAAGAAGGA 58.183 33.333 6.72 0.00 0.00 3.36
1981 4957 9.442047 AAGAAGTCATTGAGTTATGTAAGAAGG 57.558 33.333 6.72 0.00 0.00 3.46
1983 4959 9.996554 TCAAGAAGTCATTGAGTTATGTAAGAA 57.003 29.630 6.72 0.00 32.96 2.52
1984 4960 9.996554 TTCAAGAAGTCATTGAGTTATGTAAGA 57.003 29.630 6.72 0.00 37.91 2.10
1986 4962 9.219603 CCTTCAAGAAGTCATTGAGTTATGTAA 57.780 33.333 6.72 2.40 37.91 2.41
1987 4963 7.334421 GCCTTCAAGAAGTCATTGAGTTATGTA 59.666 37.037 6.72 3.56 37.91 2.29
1988 4964 6.150140 GCCTTCAAGAAGTCATTGAGTTATGT 59.850 38.462 6.72 0.00 37.91 2.29
1989 4965 6.404074 GGCCTTCAAGAAGTCATTGAGTTATG 60.404 42.308 6.72 9.25 37.91 1.90
1990 4966 5.649831 GGCCTTCAAGAAGTCATTGAGTTAT 59.350 40.000 6.72 1.10 37.91 1.89
1991 4967 5.003804 GGCCTTCAAGAAGTCATTGAGTTA 58.996 41.667 6.72 0.00 37.91 2.24
1992 4968 3.823304 GGCCTTCAAGAAGTCATTGAGTT 59.177 43.478 6.44 6.44 37.91 3.01
1993 4969 3.073650 AGGCCTTCAAGAAGTCATTGAGT 59.926 43.478 0.00 0.00 37.91 3.41
1994 4970 3.439476 CAGGCCTTCAAGAAGTCATTGAG 59.561 47.826 0.00 0.00 37.91 3.02
1995 4971 3.072915 TCAGGCCTTCAAGAAGTCATTGA 59.927 43.478 0.00 0.00 36.72 2.57
1996 4972 3.415212 TCAGGCCTTCAAGAAGTCATTG 58.585 45.455 0.00 0.00 36.72 2.82
1997 4973 3.683802 CTCAGGCCTTCAAGAAGTCATT 58.316 45.455 0.00 0.00 36.72 2.57
1998 4974 2.617532 GCTCAGGCCTTCAAGAAGTCAT 60.618 50.000 0.00 0.00 36.72 3.06
1999 4975 1.271054 GCTCAGGCCTTCAAGAAGTCA 60.271 52.381 0.00 0.00 36.72 3.41
2000 4976 1.447945 GCTCAGGCCTTCAAGAAGTC 58.552 55.000 0.00 0.00 36.72 3.01
2001 4977 3.641017 GCTCAGGCCTTCAAGAAGT 57.359 52.632 0.00 0.00 36.72 3.01
2012 4988 0.251165 TAGTTTGGTTGGGCTCAGGC 60.251 55.000 0.00 0.00 37.82 4.85
2013 4989 1.534729 GTAGTTTGGTTGGGCTCAGG 58.465 55.000 0.00 0.00 0.00 3.86
2014 4990 1.156736 CGTAGTTTGGTTGGGCTCAG 58.843 55.000 0.00 0.00 0.00 3.35
2015 4991 0.250553 CCGTAGTTTGGTTGGGCTCA 60.251 55.000 0.00 0.00 0.00 4.26
2016 4992 0.250597 ACCGTAGTTTGGTTGGGCTC 60.251 55.000 0.00 0.00 35.82 4.70
2017 4993 0.184211 AACCGTAGTTTGGTTGGGCT 59.816 50.000 0.00 0.00 42.91 5.19
2018 4994 0.594602 GAACCGTAGTTTGGTTGGGC 59.405 55.000 1.51 0.00 42.91 5.36
2019 4995 2.265589 AGAACCGTAGTTTGGTTGGG 57.734 50.000 1.51 0.00 42.91 4.12
2020 4996 3.999046 AGTAGAACCGTAGTTTGGTTGG 58.001 45.455 1.51 0.00 42.91 3.77
2021 4997 6.392354 TGATAGTAGAACCGTAGTTTGGTTG 58.608 40.000 1.51 0.00 42.91 3.77
2022 4998 6.210185 ACTGATAGTAGAACCGTAGTTTGGTT 59.790 38.462 0.00 0.00 42.91 3.67
2023 4999 5.713861 ACTGATAGTAGAACCGTAGTTTGGT 59.286 40.000 0.00 0.00 42.98 3.67
2024 5000 6.205101 ACTGATAGTAGAACCGTAGTTTGG 57.795 41.667 0.00 0.00 35.94 3.28
2025 5001 7.536855 AGAACTGATAGTAGAACCGTAGTTTG 58.463 38.462 0.00 0.00 35.94 2.93
2026 5002 7.700022 AGAACTGATAGTAGAACCGTAGTTT 57.300 36.000 0.00 0.00 35.94 2.66
2027 5003 7.012232 GCTAGAACTGATAGTAGAACCGTAGTT 59.988 40.741 0.00 0.00 39.54 2.24
2028 5004 6.482973 GCTAGAACTGATAGTAGAACCGTAGT 59.517 42.308 0.00 0.00 0.00 2.73
2029 5005 6.482641 TGCTAGAACTGATAGTAGAACCGTAG 59.517 42.308 0.00 0.00 0.00 3.51
2030 5006 6.351711 TGCTAGAACTGATAGTAGAACCGTA 58.648 40.000 0.00 0.00 0.00 4.02
2031 5007 5.191426 TGCTAGAACTGATAGTAGAACCGT 58.809 41.667 0.00 0.00 0.00 4.83
2032 5008 5.752892 TGCTAGAACTGATAGTAGAACCG 57.247 43.478 0.00 0.00 0.00 4.44
2033 5009 8.950208 AATTTGCTAGAACTGATAGTAGAACC 57.050 34.615 0.00 0.00 0.00 3.62
2036 5012 9.751542 GCTAAATTTGCTAGAACTGATAGTAGA 57.248 33.333 0.00 0.00 0.00 2.59
2037 5013 9.757227 AGCTAAATTTGCTAGAACTGATAGTAG 57.243 33.333 11.76 0.00 39.21 2.57
2050 5026 8.807948 AAGTGATTTCCTAGCTAAATTTGCTA 57.192 30.769 16.36 16.36 41.46 3.49
2051 5027 7.709149 AAGTGATTTCCTAGCTAAATTTGCT 57.291 32.000 15.97 15.97 43.79 3.91
2052 5028 8.458843 TGTAAGTGATTTCCTAGCTAAATTTGC 58.541 33.333 0.00 2.83 0.00 3.68
2053 5029 9.774742 GTGTAAGTGATTTCCTAGCTAAATTTG 57.225 33.333 0.00 0.00 0.00 2.32
2054 5030 9.515226 TGTGTAAGTGATTTCCTAGCTAAATTT 57.485 29.630 0.00 0.00 0.00 1.82
2055 5031 9.167311 CTGTGTAAGTGATTTCCTAGCTAAATT 57.833 33.333 0.00 0.00 0.00 1.82
2056 5032 8.322091 ACTGTGTAAGTGATTTCCTAGCTAAAT 58.678 33.333 0.00 0.00 37.88 1.40
2057 5033 7.676947 ACTGTGTAAGTGATTTCCTAGCTAAA 58.323 34.615 0.00 0.00 37.88 1.85
2058 5034 7.241042 ACTGTGTAAGTGATTTCCTAGCTAA 57.759 36.000 0.00 0.00 37.88 3.09
2059 5035 6.852420 ACTGTGTAAGTGATTTCCTAGCTA 57.148 37.500 0.00 0.00 37.88 3.32
2060 5036 5.746990 ACTGTGTAAGTGATTTCCTAGCT 57.253 39.130 0.00 0.00 37.88 3.32
2061 5037 6.091441 CAGAACTGTGTAAGTGATTTCCTAGC 59.909 42.308 0.00 0.00 39.81 3.42
2062 5038 7.329717 GTCAGAACTGTGTAAGTGATTTCCTAG 59.670 40.741 1.73 0.00 39.81 3.02
2063 5039 7.152645 GTCAGAACTGTGTAAGTGATTTCCTA 58.847 38.462 1.73 0.00 39.81 2.94
2064 5040 5.992217 GTCAGAACTGTGTAAGTGATTTCCT 59.008 40.000 1.73 0.00 39.81 3.36
2065 5041 5.179555 GGTCAGAACTGTGTAAGTGATTTCC 59.820 44.000 1.73 0.00 39.81 3.13
2066 5042 5.758296 TGGTCAGAACTGTGTAAGTGATTTC 59.242 40.000 1.73 0.00 39.81 2.17
2067 5043 5.527582 GTGGTCAGAACTGTGTAAGTGATTT 59.472 40.000 1.73 0.00 39.81 2.17
2068 5044 5.057149 GTGGTCAGAACTGTGTAAGTGATT 58.943 41.667 1.73 0.00 39.81 2.57
2069 5045 4.632153 GTGGTCAGAACTGTGTAAGTGAT 58.368 43.478 1.73 0.00 39.81 3.06
2070 5046 3.490249 CGTGGTCAGAACTGTGTAAGTGA 60.490 47.826 1.73 0.00 39.81 3.41
2071 5047 2.794910 CGTGGTCAGAACTGTGTAAGTG 59.205 50.000 1.73 0.00 39.81 3.16
2072 5048 2.691526 TCGTGGTCAGAACTGTGTAAGT 59.308 45.455 1.73 0.00 42.60 2.24
2073 5049 3.364889 TCGTGGTCAGAACTGTGTAAG 57.635 47.619 1.73 0.00 0.00 2.34
2074 5050 4.055360 CAATCGTGGTCAGAACTGTGTAA 58.945 43.478 1.73 0.00 0.00 2.41
2075 5051 3.319689 TCAATCGTGGTCAGAACTGTGTA 59.680 43.478 1.73 0.00 0.00 2.90
2076 5052 2.102420 TCAATCGTGGTCAGAACTGTGT 59.898 45.455 1.73 0.00 0.00 3.72
2077 5053 2.754472 TCAATCGTGGTCAGAACTGTG 58.246 47.619 1.73 0.00 0.00 3.66
2078 5054 3.685139 ATCAATCGTGGTCAGAACTGT 57.315 42.857 1.73 0.00 0.00 3.55
2079 5055 5.351458 TCATATCAATCGTGGTCAGAACTG 58.649 41.667 0.00 0.00 0.00 3.16
2080 5056 5.127845 ACTCATATCAATCGTGGTCAGAACT 59.872 40.000 0.00 0.00 0.00 3.01
2081 5057 5.352284 ACTCATATCAATCGTGGTCAGAAC 58.648 41.667 0.00 0.00 0.00 3.01
2082 5058 5.598416 ACTCATATCAATCGTGGTCAGAA 57.402 39.130 0.00 0.00 0.00 3.02
2083 5059 6.709018 TTACTCATATCAATCGTGGTCAGA 57.291 37.500 0.00 0.00 0.00 3.27
2084 5060 8.082242 TGTATTACTCATATCAATCGTGGTCAG 58.918 37.037 0.00 0.00 0.00 3.51
2085 5061 7.947282 TGTATTACTCATATCAATCGTGGTCA 58.053 34.615 0.00 0.00 0.00 4.02
2086 5062 8.812147 TTGTATTACTCATATCAATCGTGGTC 57.188 34.615 0.00 0.00 0.00 4.02
2087 5063 8.421784 ACTTGTATTACTCATATCAATCGTGGT 58.578 33.333 0.00 0.00 0.00 4.16
2088 5064 8.818141 ACTTGTATTACTCATATCAATCGTGG 57.182 34.615 0.00 0.00 0.00 4.94
2089 5065 9.463443 TGACTTGTATTACTCATATCAATCGTG 57.537 33.333 0.00 0.00 0.00 4.35
2099 5075 9.121658 TCTCTTCGTATGACTTGTATTACTCAT 57.878 33.333 0.00 0.00 0.00 2.90
2100 5076 8.396390 GTCTCTTCGTATGACTTGTATTACTCA 58.604 37.037 0.00 0.00 0.00 3.41
2101 5077 8.614346 AGTCTCTTCGTATGACTTGTATTACTC 58.386 37.037 0.00 0.00 37.76 2.59
2102 5078 8.508883 AGTCTCTTCGTATGACTTGTATTACT 57.491 34.615 0.00 0.00 37.76 2.24
2103 5079 9.224058 GAAGTCTCTTCGTATGACTTGTATTAC 57.776 37.037 11.57 0.00 46.85 1.89
2104 5080 8.953313 TGAAGTCTCTTCGTATGACTTGTATTA 58.047 33.333 11.57 0.00 46.85 0.98
2105 5081 7.827701 TGAAGTCTCTTCGTATGACTTGTATT 58.172 34.615 11.57 0.00 46.85 1.89
2106 5082 7.392494 TGAAGTCTCTTCGTATGACTTGTAT 57.608 36.000 11.57 0.00 46.85 2.29
2107 5083 6.812879 TGAAGTCTCTTCGTATGACTTGTA 57.187 37.500 11.57 0.02 46.85 2.41
2108 5084 5.707242 TGAAGTCTCTTCGTATGACTTGT 57.293 39.130 11.57 0.00 46.85 3.16
2109 5085 7.451429 CATTTGAAGTCTCTTCGTATGACTTG 58.549 38.462 11.57 0.00 46.85 3.16
2111 5087 5.578727 GCATTTGAAGTCTCTTCGTATGACT 59.421 40.000 18.57 0.00 42.12 3.41
2112 5088 5.348724 TGCATTTGAAGTCTCTTCGTATGAC 59.651 40.000 18.57 13.32 0.00 3.06
2113 5089 5.478407 TGCATTTGAAGTCTCTTCGTATGA 58.522 37.500 18.57 0.00 0.00 2.15
2114 5090 5.784750 TGCATTTGAAGTCTCTTCGTATG 57.215 39.130 13.89 13.89 0.00 2.39
2115 5091 6.108687 TCATGCATTTGAAGTCTCTTCGTAT 58.891 36.000 0.00 0.00 0.00 3.06
2116 5092 5.478407 TCATGCATTTGAAGTCTCTTCGTA 58.522 37.500 0.00 0.00 0.00 3.43
2117 5093 4.318332 TCATGCATTTGAAGTCTCTTCGT 58.682 39.130 0.00 0.00 0.00 3.85
2118 5094 4.934075 TCATGCATTTGAAGTCTCTTCG 57.066 40.909 0.00 0.00 0.00 3.79
2119 5095 6.238429 GGAGATCATGCATTTGAAGTCTCTTC 60.238 42.308 15.53 2.95 34.42 2.87
2120 5096 5.589452 GGAGATCATGCATTTGAAGTCTCTT 59.411 40.000 15.53 0.00 34.42 2.85
2121 5097 5.104444 AGGAGATCATGCATTTGAAGTCTCT 60.104 40.000 15.53 6.07 34.42 3.10
2122 5098 5.007823 CAGGAGATCATGCATTTGAAGTCTC 59.992 44.000 10.53 10.53 33.73 3.36
2123 5099 4.882427 CAGGAGATCATGCATTTGAAGTCT 59.118 41.667 0.00 0.00 0.00 3.24
2124 5100 5.171147 CAGGAGATCATGCATTTGAAGTC 57.829 43.478 0.00 0.00 0.00 3.01
2135 5111 1.158484 CGCTGGTGCAGGAGATCATG 61.158 60.000 0.00 0.00 39.64 3.07
2136 5112 1.145598 CGCTGGTGCAGGAGATCAT 59.854 57.895 0.00 0.00 39.64 2.45
2137 5113 2.580815 CGCTGGTGCAGGAGATCA 59.419 61.111 0.00 0.00 39.64 2.92
2138 5114 2.894387 GCGCTGGTGCAGGAGATC 60.894 66.667 0.00 0.00 39.64 2.75
2139 5115 4.479993 GGCGCTGGTGCAGGAGAT 62.480 66.667 7.64 0.00 39.64 2.75
2146 5122 3.809775 TTTATGCGGCGCTGGTGC 61.810 61.111 33.26 12.62 0.00 5.01
2147 5123 2.100216 GTTTATGCGGCGCTGGTG 59.900 61.111 33.26 1.47 0.00 4.17
2148 5124 2.359354 TGTTTATGCGGCGCTGGT 60.359 55.556 33.26 20.31 0.00 4.00
2149 5125 2.106074 TCTGTTTATGCGGCGCTGG 61.106 57.895 33.26 13.93 0.00 4.85
2150 5126 1.060937 GTCTGTTTATGCGGCGCTG 59.939 57.895 33.26 13.18 0.00 5.18
2151 5127 2.106683 GGTCTGTTTATGCGGCGCT 61.107 57.895 33.26 20.09 0.00 5.92
2152 5128 2.106683 AGGTCTGTTTATGCGGCGC 61.107 57.895 27.44 27.44 0.00 6.53
2153 5129 1.019278 ACAGGTCTGTTTATGCGGCG 61.019 55.000 0.51 0.51 41.83 6.46
2154 5130 2.854522 ACAGGTCTGTTTATGCGGC 58.145 52.632 0.00 0.00 41.83 6.53
2164 5140 1.162698 CAGTGGCATGAACAGGTCTG 58.837 55.000 0.00 0.00 0.00 3.51
2165 5141 0.767375 ACAGTGGCATGAACAGGTCT 59.233 50.000 0.00 0.00 0.00 3.85
2166 5142 1.160137 GACAGTGGCATGAACAGGTC 58.840 55.000 0.00 2.81 0.00 3.85
2167 5143 0.473755 TGACAGTGGCATGAACAGGT 59.526 50.000 0.00 0.00 0.00 4.00
2168 5144 1.830279 ATGACAGTGGCATGAACAGG 58.170 50.000 11.72 0.00 0.00 4.00
2169 5145 2.815503 TGAATGACAGTGGCATGAACAG 59.184 45.455 13.53 0.00 0.00 3.16
2170 5146 2.861274 TGAATGACAGTGGCATGAACA 58.139 42.857 13.53 10.67 0.00 3.18
2171 5147 3.004629 TGTTGAATGACAGTGGCATGAAC 59.995 43.478 13.53 17.92 0.00 3.18
2172 5148 3.220940 TGTTGAATGACAGTGGCATGAA 58.779 40.909 13.53 5.89 0.00 2.57
2173 5149 2.861274 TGTTGAATGACAGTGGCATGA 58.139 42.857 13.53 0.00 0.00 3.07
2174 5150 3.057104 ACATGTTGAATGACAGTGGCATG 60.057 43.478 13.53 1.55 38.57 4.06
2175 5151 3.159472 ACATGTTGAATGACAGTGGCAT 58.841 40.909 5.35 5.35 32.19 4.40
2176 5152 2.585330 ACATGTTGAATGACAGTGGCA 58.415 42.857 0.00 0.00 32.19 4.92
2177 5153 3.004629 TGAACATGTTGAATGACAGTGGC 59.995 43.478 17.58 0.00 32.19 5.01
2178 5154 4.539870 GTGAACATGTTGAATGACAGTGG 58.460 43.478 17.58 0.00 32.19 4.00
2179 5155 4.539870 GGTGAACATGTTGAATGACAGTG 58.460 43.478 17.58 0.00 32.19 3.66
2180 5156 3.250762 CGGTGAACATGTTGAATGACAGT 59.749 43.478 17.58 0.00 32.19 3.55
2181 5157 3.813800 CGGTGAACATGTTGAATGACAG 58.186 45.455 17.58 1.96 32.19 3.51
2182 5158 2.031245 GCGGTGAACATGTTGAATGACA 60.031 45.455 17.58 3.36 0.00 3.58
2183 5159 2.226437 AGCGGTGAACATGTTGAATGAC 59.774 45.455 17.58 0.32 0.00 3.06
2184 5160 2.503331 AGCGGTGAACATGTTGAATGA 58.497 42.857 17.58 0.00 0.00 2.57
2185 5161 2.995466 AGCGGTGAACATGTTGAATG 57.005 45.000 17.58 4.59 0.00 2.67
2186 5162 3.674997 ACTAGCGGTGAACATGTTGAAT 58.325 40.909 17.58 0.00 0.00 2.57
2187 5163 3.120321 ACTAGCGGTGAACATGTTGAA 57.880 42.857 17.58 0.56 0.00 2.69
2188 5164 2.831685 ACTAGCGGTGAACATGTTGA 57.168 45.000 17.58 4.23 0.00 3.18
2189 5165 3.242944 CGATACTAGCGGTGAACATGTTG 59.757 47.826 17.58 2.21 0.00 3.33
2190 5166 3.129813 TCGATACTAGCGGTGAACATGTT 59.870 43.478 11.78 11.78 0.00 2.71
2191 5167 2.686405 TCGATACTAGCGGTGAACATGT 59.314 45.455 0.00 0.00 0.00 3.21
2192 5168 3.349488 TCGATACTAGCGGTGAACATG 57.651 47.619 0.00 0.00 0.00 3.21
2193 5169 4.547532 GATTCGATACTAGCGGTGAACAT 58.452 43.478 0.00 0.00 0.00 2.71
2194 5170 3.243301 GGATTCGATACTAGCGGTGAACA 60.243 47.826 0.00 0.00 0.00 3.18
2195 5171 3.243301 TGGATTCGATACTAGCGGTGAAC 60.243 47.826 0.00 0.00 0.00 3.18
2196 5172 2.953648 TGGATTCGATACTAGCGGTGAA 59.046 45.455 0.00 0.00 0.00 3.18
2197 5173 2.578786 TGGATTCGATACTAGCGGTGA 58.421 47.619 0.00 0.00 0.00 4.02
2198 5174 3.191581 AGATGGATTCGATACTAGCGGTG 59.808 47.826 0.00 0.00 0.00 4.94
2199 5175 3.422796 AGATGGATTCGATACTAGCGGT 58.577 45.455 0.00 0.00 0.00 5.68
2200 5176 3.440522 TGAGATGGATTCGATACTAGCGG 59.559 47.826 0.00 0.00 0.00 5.52
2201 5177 4.686839 TGAGATGGATTCGATACTAGCG 57.313 45.455 0.00 0.00 0.00 4.26
2202 5178 5.290643 GCATTGAGATGGATTCGATACTAGC 59.709 44.000 0.00 0.00 33.72 3.42
2203 5179 6.393171 TGCATTGAGATGGATTCGATACTAG 58.607 40.000 0.00 0.00 33.72 2.57
2204 5180 6.345096 TGCATTGAGATGGATTCGATACTA 57.655 37.500 0.00 0.00 33.72 1.82
2205 5181 5.219343 TGCATTGAGATGGATTCGATACT 57.781 39.130 0.00 0.00 33.72 2.12
2206 5182 5.929697 TTGCATTGAGATGGATTCGATAC 57.070 39.130 0.00 0.00 33.35 2.24
2207 5183 7.364970 CAATTTGCATTGAGATGGATTCGATA 58.635 34.615 0.00 0.00 42.35 2.92
2208 5184 6.213677 CAATTTGCATTGAGATGGATTCGAT 58.786 36.000 0.00 0.00 42.35 3.59
2209 5185 5.450826 CCAATTTGCATTGAGATGGATTCGA 60.451 40.000 1.52 0.00 42.35 3.71
2210 5186 4.743151 CCAATTTGCATTGAGATGGATTCG 59.257 41.667 1.52 0.00 42.35 3.34
2211 5187 5.054477 CCCAATTTGCATTGAGATGGATTC 58.946 41.667 1.52 0.00 42.35 2.52
2212 5188 4.717778 TCCCAATTTGCATTGAGATGGATT 59.282 37.500 1.52 0.00 42.35 3.01
2213 5189 4.291792 TCCCAATTTGCATTGAGATGGAT 58.708 39.130 1.52 0.00 42.35 3.41
2214 5190 3.702548 CTCCCAATTTGCATTGAGATGGA 59.297 43.478 1.52 0.00 42.35 3.41
2215 5191 3.702548 TCTCCCAATTTGCATTGAGATGG 59.297 43.478 1.52 0.00 42.35 3.51
2216 5192 4.994907 TCTCCCAATTTGCATTGAGATG 57.005 40.909 1.52 0.00 42.35 2.90
2217 5193 4.587684 GGATCTCCCAATTTGCATTGAGAT 59.412 41.667 13.85 13.85 42.35 2.75
2218 5194 3.956199 GGATCTCCCAATTTGCATTGAGA 59.044 43.478 1.52 0.00 42.35 3.27
2219 5195 3.243301 CGGATCTCCCAATTTGCATTGAG 60.243 47.826 1.52 0.00 42.35 3.02
2220 5196 2.689471 CGGATCTCCCAATTTGCATTGA 59.311 45.455 1.52 0.00 42.35 2.57
2221 5197 2.689471 TCGGATCTCCCAATTTGCATTG 59.311 45.455 0.00 0.00 39.79 2.82
2222 5198 3.017048 TCGGATCTCCCAATTTGCATT 57.983 42.857 0.00 0.00 34.14 3.56
2223 5199 2.689983 GTTCGGATCTCCCAATTTGCAT 59.310 45.455 0.00 0.00 34.14 3.96
2224 5200 2.091541 GTTCGGATCTCCCAATTTGCA 58.908 47.619 0.00 0.00 34.14 4.08
2225 5201 1.064060 CGTTCGGATCTCCCAATTTGC 59.936 52.381 0.00 0.00 34.14 3.68
2226 5202 2.356135 ACGTTCGGATCTCCCAATTTG 58.644 47.619 0.00 0.00 34.14 2.32
2227 5203 2.747446 CAACGTTCGGATCTCCCAATTT 59.253 45.455 0.00 0.00 34.14 1.82
2228 5204 2.027561 TCAACGTTCGGATCTCCCAATT 60.028 45.455 0.00 0.00 34.14 2.32
2229 5205 1.553248 TCAACGTTCGGATCTCCCAAT 59.447 47.619 0.00 0.00 34.14 3.16
2230 5206 0.970640 TCAACGTTCGGATCTCCCAA 59.029 50.000 0.00 0.00 34.14 4.12
2231 5207 0.970640 TTCAACGTTCGGATCTCCCA 59.029 50.000 0.00 0.00 34.14 4.37
2232 5208 1.933853 CATTCAACGTTCGGATCTCCC 59.066 52.381 0.00 0.00 0.00 4.30
2233 5209 1.933853 CCATTCAACGTTCGGATCTCC 59.066 52.381 0.00 0.00 0.00 3.71
2234 5210 1.327764 GCCATTCAACGTTCGGATCTC 59.672 52.381 0.00 0.00 0.00 2.75
2235 5211 1.066143 AGCCATTCAACGTTCGGATCT 60.066 47.619 0.00 0.00 0.00 2.75
2236 5212 1.369625 AGCCATTCAACGTTCGGATC 58.630 50.000 0.00 0.00 0.00 3.36
2237 5213 2.167693 TCTAGCCATTCAACGTTCGGAT 59.832 45.455 0.00 0.00 0.00 4.18
2238 5214 1.546923 TCTAGCCATTCAACGTTCGGA 59.453 47.619 0.00 0.00 0.00 4.55
2239 5215 1.927174 CTCTAGCCATTCAACGTTCGG 59.073 52.381 0.00 0.00 0.00 4.30
2240 5216 2.876091 TCTCTAGCCATTCAACGTTCG 58.124 47.619 0.00 0.00 0.00 3.95
2241 5217 6.238130 GGTTTATCTCTAGCCATTCAACGTTC 60.238 42.308 0.00 0.00 0.00 3.95
2242 5218 5.585047 GGTTTATCTCTAGCCATTCAACGTT 59.415 40.000 0.00 0.00 0.00 3.99
2243 5219 5.116882 GGTTTATCTCTAGCCATTCAACGT 58.883 41.667 0.00 0.00 0.00 3.99
2244 5220 4.511826 GGGTTTATCTCTAGCCATTCAACG 59.488 45.833 0.00 0.00 32.24 4.10
2245 5221 5.685728 AGGGTTTATCTCTAGCCATTCAAC 58.314 41.667 0.00 0.00 34.38 3.18
2246 5222 5.163195 GGAGGGTTTATCTCTAGCCATTCAA 60.163 44.000 0.00 0.00 34.38 2.69
2247 5223 4.348168 GGAGGGTTTATCTCTAGCCATTCA 59.652 45.833 0.00 0.00 34.38 2.57
2248 5224 4.348168 TGGAGGGTTTATCTCTAGCCATTC 59.652 45.833 0.00 0.00 34.38 2.67
2249 5225 4.307259 TGGAGGGTTTATCTCTAGCCATT 58.693 43.478 0.00 0.00 34.38 3.16
2250 5226 3.941629 TGGAGGGTTTATCTCTAGCCAT 58.058 45.455 0.00 0.00 34.38 4.40
2251 5227 3.414759 TGGAGGGTTTATCTCTAGCCA 57.585 47.619 0.00 0.00 34.38 4.75
2252 5228 3.558109 GCATGGAGGGTTTATCTCTAGCC 60.558 52.174 0.00 0.00 0.00 3.93
2253 5229 3.071602 TGCATGGAGGGTTTATCTCTAGC 59.928 47.826 0.00 0.00 0.00 3.42
2254 5230 4.963318 TGCATGGAGGGTTTATCTCTAG 57.037 45.455 0.00 0.00 0.00 2.43
2255 5231 4.505566 GCATGCATGGAGGGTTTATCTCTA 60.506 45.833 27.34 0.00 0.00 2.43
2256 5232 3.749954 GCATGCATGGAGGGTTTATCTCT 60.750 47.826 27.34 0.00 0.00 3.10
2257 5233 2.555757 GCATGCATGGAGGGTTTATCTC 59.444 50.000 27.34 2.70 0.00 2.75
2258 5234 2.091720 TGCATGCATGGAGGGTTTATCT 60.092 45.455 27.34 0.00 0.00 1.98
2259 5235 2.035066 GTGCATGCATGGAGGGTTTATC 59.965 50.000 25.64 7.10 0.00 1.75
2260 5236 2.034124 GTGCATGCATGGAGGGTTTAT 58.966 47.619 25.64 0.00 0.00 1.40
2261 5237 1.005805 AGTGCATGCATGGAGGGTTTA 59.994 47.619 25.64 0.00 0.00 2.01
2262 5238 0.251922 AGTGCATGCATGGAGGGTTT 60.252 50.000 25.64 6.10 0.00 3.27
2263 5239 0.251922 AAGTGCATGCATGGAGGGTT 60.252 50.000 25.64 15.26 0.00 4.11
2264 5240 0.625316 TAAGTGCATGCATGGAGGGT 59.375 50.000 25.64 14.79 0.00 4.34
2265 5241 1.991121 ATAAGTGCATGCATGGAGGG 58.009 50.000 25.64 2.48 0.00 4.30
2266 5242 4.395959 AAAATAAGTGCATGCATGGAGG 57.604 40.909 25.64 2.89 0.00 4.30
2267 5243 5.518847 CAGAAAAATAAGTGCATGCATGGAG 59.481 40.000 25.64 3.29 0.00 3.86
2268 5244 5.412640 CAGAAAAATAAGTGCATGCATGGA 58.587 37.500 25.64 22.97 0.00 3.41
2269 5245 4.033587 GCAGAAAAATAAGTGCATGCATGG 59.966 41.667 25.64 10.03 35.91 3.66
2270 5246 4.868171 AGCAGAAAAATAAGTGCATGCATG 59.132 37.500 25.64 22.70 38.44 4.06
2271 5247 5.080969 AGCAGAAAAATAAGTGCATGCAT 57.919 34.783 25.64 11.73 38.44 3.96
2272 5248 4.524316 AGCAGAAAAATAAGTGCATGCA 57.476 36.364 18.46 18.46 38.44 3.96
2273 5249 4.328169 GGAAGCAGAAAAATAAGTGCATGC 59.672 41.667 11.82 11.82 38.44 4.06
2274 5250 5.472148 TGGAAGCAGAAAAATAAGTGCATG 58.528 37.500 0.00 0.00 38.44 4.06
2275 5251 5.726980 TGGAAGCAGAAAAATAAGTGCAT 57.273 34.783 0.00 0.00 38.44 3.96
2276 5252 5.509501 CCTTGGAAGCAGAAAAATAAGTGCA 60.510 40.000 0.00 0.00 38.44 4.57
2277 5253 4.925646 CCTTGGAAGCAGAAAAATAAGTGC 59.074 41.667 0.00 0.00 36.10 4.40
2278 5254 4.925646 GCCTTGGAAGCAGAAAAATAAGTG 59.074 41.667 0.00 0.00 0.00 3.16
2279 5255 4.588528 TGCCTTGGAAGCAGAAAAATAAGT 59.411 37.500 0.00 0.00 34.69 2.24
2280 5256 5.138125 TGCCTTGGAAGCAGAAAAATAAG 57.862 39.130 0.00 0.00 34.69 1.73
2281 5257 5.481473 AGATGCCTTGGAAGCAGAAAAATAA 59.519 36.000 0.00 0.00 44.90 1.40
2282 5258 5.018809 AGATGCCTTGGAAGCAGAAAAATA 58.981 37.500 0.00 0.00 44.90 1.40
2283 5259 3.836562 AGATGCCTTGGAAGCAGAAAAAT 59.163 39.130 0.00 0.00 44.90 1.82
2284 5260 3.233507 AGATGCCTTGGAAGCAGAAAAA 58.766 40.909 0.00 0.00 44.90 1.94
2285 5261 2.821969 GAGATGCCTTGGAAGCAGAAAA 59.178 45.455 0.00 0.00 44.90 2.29
2286 5262 2.440409 GAGATGCCTTGGAAGCAGAAA 58.560 47.619 0.00 0.00 44.90 2.52
2287 5263 1.676916 CGAGATGCCTTGGAAGCAGAA 60.677 52.381 0.00 0.00 44.90 3.02
2288 5264 0.107993 CGAGATGCCTTGGAAGCAGA 60.108 55.000 0.00 0.00 44.90 4.26
2289 5265 0.107993 TCGAGATGCCTTGGAAGCAG 60.108 55.000 0.00 0.00 44.90 4.24
2290 5266 0.391661 GTCGAGATGCCTTGGAAGCA 60.392 55.000 0.00 0.00 45.94 3.91
2291 5267 0.391661 TGTCGAGATGCCTTGGAAGC 60.392 55.000 0.00 0.00 0.00 3.86
2292 5268 1.938577 CATGTCGAGATGCCTTGGAAG 59.061 52.381 9.87 0.00 0.00 3.46
2293 5269 1.554617 TCATGTCGAGATGCCTTGGAA 59.445 47.619 17.29 0.00 0.00 3.53
2294 5270 1.137675 CTCATGTCGAGATGCCTTGGA 59.862 52.381 17.29 0.00 45.45 3.53
2295 5271 1.137675 TCTCATGTCGAGATGCCTTGG 59.862 52.381 17.29 5.57 46.18 3.61
2296 5272 2.591571 TCTCATGTCGAGATGCCTTG 57.408 50.000 17.29 7.75 46.18 3.61
2301 5277 6.898603 AGGGAACTCTTCTCATGTCGAGATG 61.899 48.000 16.08 16.08 44.42 2.90
2302 5278 4.873945 AGGGAACTCTTCTCATGTCGAGAT 60.874 45.833 0.00 0.00 44.42 2.75
2303 5279 3.562393 AGGGAACTCTTCTCATGTCGAGA 60.562 47.826 0.00 0.00 43.59 4.04
2304 5280 2.757868 AGGGAACTCTTCTCATGTCGAG 59.242 50.000 0.00 0.00 38.96 4.04
2305 5281 2.493675 CAGGGAACTCTTCTCATGTCGA 59.506 50.000 0.00 0.00 40.21 4.20
2306 5282 2.886081 CAGGGAACTCTTCTCATGTCG 58.114 52.381 0.00 0.00 40.21 4.35
2307 5283 2.027745 TGCAGGGAACTCTTCTCATGTC 60.028 50.000 0.00 0.00 40.21 3.06
2308 5284 1.980765 TGCAGGGAACTCTTCTCATGT 59.019 47.619 0.00 0.00 40.21 3.21
2309 5285 2.630158 CTGCAGGGAACTCTTCTCATG 58.370 52.381 5.57 0.00 40.21 3.07
2310 5286 1.558756 CCTGCAGGGAACTCTTCTCAT 59.441 52.381 26.14 0.00 40.21 2.90
2311 5287 0.979665 CCTGCAGGGAACTCTTCTCA 59.020 55.000 26.14 0.00 40.21 3.27
2312 5288 1.270907 TCCTGCAGGGAACTCTTCTC 58.729 55.000 32.23 0.00 41.91 2.87
2313 5289 3.483352 TCCTGCAGGGAACTCTTCT 57.517 52.632 32.23 0.00 41.91 2.85
2322 5298 4.571369 ATCATCTATTCATCCTGCAGGG 57.429 45.455 32.23 17.56 35.41 4.45
2323 5299 6.038382 GCAATATCATCTATTCATCCTGCAGG 59.962 42.308 27.87 27.87 0.00 4.85
2324 5300 6.038382 GGCAATATCATCTATTCATCCTGCAG 59.962 42.308 6.78 6.78 0.00 4.41
2325 5301 5.884232 GGCAATATCATCTATTCATCCTGCA 59.116 40.000 0.00 0.00 0.00 4.41
2326 5302 5.007430 CGGCAATATCATCTATTCATCCTGC 59.993 44.000 0.00 0.00 0.00 4.85
2327 5303 5.007430 GCGGCAATATCATCTATTCATCCTG 59.993 44.000 0.00 0.00 0.00 3.86
2328 5304 5.121811 GCGGCAATATCATCTATTCATCCT 58.878 41.667 0.00 0.00 0.00 3.24
2329 5305 4.025396 CGCGGCAATATCATCTATTCATCC 60.025 45.833 0.00 0.00 0.00 3.51
2330 5306 4.805719 TCGCGGCAATATCATCTATTCATC 59.194 41.667 6.13 0.00 0.00 2.92
2331 5307 4.758688 TCGCGGCAATATCATCTATTCAT 58.241 39.130 6.13 0.00 0.00 2.57
2332 5308 4.186856 TCGCGGCAATATCATCTATTCA 57.813 40.909 6.13 0.00 0.00 2.57
2333 5309 4.805719 TGATCGCGGCAATATCATCTATTC 59.194 41.667 6.13 0.00 0.00 1.75
2334 5310 4.758688 TGATCGCGGCAATATCATCTATT 58.241 39.130 6.13 0.00 0.00 1.73
2335 5311 4.391405 TGATCGCGGCAATATCATCTAT 57.609 40.909 6.13 0.00 0.00 1.98
2336 5312 3.866883 TGATCGCGGCAATATCATCTA 57.133 42.857 6.13 0.00 0.00 1.98
2337 5313 2.749280 TGATCGCGGCAATATCATCT 57.251 45.000 6.13 0.00 0.00 2.90
2338 5314 3.582444 GATGATCGCGGCAATATCATC 57.418 47.619 23.52 23.52 45.05 2.92
2339 5315 2.674852 GTGATGATCGCGGCAATATCAT 59.325 45.455 17.18 17.18 41.78 2.45
2340 5316 2.068519 GTGATGATCGCGGCAATATCA 58.931 47.619 6.13 8.21 34.35 2.15
2341 5317 1.059692 CGTGATGATCGCGGCAATATC 59.940 52.381 19.69 1.38 45.61 1.63
2342 5318 1.070821 CGTGATGATCGCGGCAATAT 58.929 50.000 19.69 0.00 45.61 1.28
2343 5319 2.516486 CGTGATGATCGCGGCAATA 58.484 52.632 19.69 0.00 45.61 1.90
2344 5320 3.323000 CGTGATGATCGCGGCAAT 58.677 55.556 19.69 0.00 45.61 3.56
2350 5326 1.083806 TGGTGCTTCGTGATGATCGC 61.084 55.000 0.00 0.00 0.00 4.58
2351 5327 1.575244 ATGGTGCTTCGTGATGATCG 58.425 50.000 0.00 0.00 0.00 3.69
2352 5328 2.802816 GGTATGGTGCTTCGTGATGATC 59.197 50.000 0.00 0.00 0.00 2.92
2353 5329 2.170397 TGGTATGGTGCTTCGTGATGAT 59.830 45.455 0.00 0.00 0.00 2.45
2354 5330 1.552792 TGGTATGGTGCTTCGTGATGA 59.447 47.619 0.00 0.00 0.00 2.92
2355 5331 1.935873 CTGGTATGGTGCTTCGTGATG 59.064 52.381 0.00 0.00 0.00 3.07
2356 5332 1.743772 GCTGGTATGGTGCTTCGTGAT 60.744 52.381 0.00 0.00 0.00 3.06
2357 5333 0.391130 GCTGGTATGGTGCTTCGTGA 60.391 55.000 0.00 0.00 0.00 4.35
2358 5334 0.391661 AGCTGGTATGGTGCTTCGTG 60.392 55.000 0.00 0.00 32.61 4.35
2359 5335 0.108138 GAGCTGGTATGGTGCTTCGT 60.108 55.000 0.00 0.00 37.16 3.85
2360 5336 0.811616 GGAGCTGGTATGGTGCTTCG 60.812 60.000 0.00 0.00 37.16 3.79
2361 5337 0.253044 TGGAGCTGGTATGGTGCTTC 59.747 55.000 0.00 0.00 37.16 3.86
2362 5338 0.254178 CTGGAGCTGGTATGGTGCTT 59.746 55.000 0.00 0.00 37.16 3.91
2363 5339 0.911525 ACTGGAGCTGGTATGGTGCT 60.912 55.000 0.00 0.00 40.02 4.40
2364 5340 0.462759 GACTGGAGCTGGTATGGTGC 60.463 60.000 0.00 0.00 0.00 5.01
2365 5341 0.904649 TGACTGGAGCTGGTATGGTG 59.095 55.000 0.00 0.00 0.00 4.17
2366 5342 0.905357 GTGACTGGAGCTGGTATGGT 59.095 55.000 0.00 0.00 0.00 3.55
2367 5343 1.134580 CAGTGACTGGAGCTGGTATGG 60.135 57.143 4.28 0.00 0.00 2.74
2368 5344 1.552337 ACAGTGACTGGAGCTGGTATG 59.448 52.381 17.92 0.00 35.51 2.39
2369 5345 1.552337 CACAGTGACTGGAGCTGGTAT 59.448 52.381 17.92 0.00 35.51 2.73
2370 5346 0.969149 CACAGTGACTGGAGCTGGTA 59.031 55.000 17.92 0.00 35.51 3.25
2371 5347 0.760567 TCACAGTGACTGGAGCTGGT 60.761 55.000 17.92 0.00 35.51 4.00
2372 5348 0.037512 CTCACAGTGACTGGAGCTGG 60.038 60.000 17.92 0.00 35.51 4.85
2373 5349 0.678395 ACTCACAGTGACTGGAGCTG 59.322 55.000 22.52 11.39 34.49 4.24
2374 5350 1.069823 CAACTCACAGTGACTGGAGCT 59.930 52.381 22.52 13.23 34.49 4.09
2375 5351 1.506493 CAACTCACAGTGACTGGAGC 58.494 55.000 22.52 0.00 34.49 4.70
2376 5352 1.875576 GCCAACTCACAGTGACTGGAG 60.876 57.143 23.32 21.57 35.51 3.86
2377 5353 0.106708 GCCAACTCACAGTGACTGGA 59.893 55.000 23.32 10.17 35.51 3.86
2378 5354 0.886490 GGCCAACTCACAGTGACTGG 60.886 60.000 17.92 17.74 35.51 4.00
2379 5355 0.179048 TGGCCAACTCACAGTGACTG 60.179 55.000 11.70 11.70 37.52 3.51
2380 5356 0.546122 TTGGCCAACTCACAGTGACT 59.454 50.000 16.05 0.00 0.00 3.41
2436 5412 6.360370 TCTCAACTAACTCTGGCATTACTT 57.640 37.500 0.00 0.00 0.00 2.24
2445 5421 6.071896 TGGTAGTGACATCTCAACTAACTCTG 60.072 42.308 0.00 0.00 0.00 3.35
2578 5554 5.939296 TGCTCTTGATTGTGTGTATCATGAA 59.061 36.000 0.00 0.00 36.41 2.57
2612 5592 1.482593 GCTCAGGGTAGCTGTACATGT 59.517 52.381 2.69 2.69 39.50 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.