Multiple sequence alignment - TraesCS3D01G166900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G166900 chr3D 100.000 7867 0 0 1 7867 141205188 141213054 0.000000e+00 14528
1 TraesCS3D01G166900 chr3D 89.485 466 29 11 7064 7509 141412169 141412634 8.860000e-159 571
2 TraesCS3D01G166900 chr3D 95.322 342 15 1 7526 7867 39904685 39904345 6.940000e-150 542
3 TraesCS3D01G166900 chr3A 95.402 4350 126 28 837 5149 159422651 159426963 0.000000e+00 6857
4 TraesCS3D01G166900 chr3A 95.398 2412 84 11 5139 7530 159427162 159429566 0.000000e+00 3814
5 TraesCS3D01G166900 chr3A 94.589 887 43 3 6647 7530 159720239 159721123 0.000000e+00 1367
6 TraesCS3D01G166900 chr3A 92.549 510 29 1 6142 6651 159718206 159718706 0.000000e+00 723
7 TraesCS3D01G166900 chr3A 85.392 664 68 13 158 813 159421742 159422384 0.000000e+00 662
8 TraesCS3D01G166900 chr3A 86.994 469 46 6 7064 7518 159833596 159834063 1.510000e-141 514
9 TraesCS3D01G166900 chr3A 86.598 97 7 4 1 97 159421306 159421396 1.400000e-17 102
10 TraesCS3D01G166900 chr3B 95.271 3997 123 29 619 4575 202924010 202927980 0.000000e+00 6274
11 TraesCS3D01G166900 chr3B 96.920 2955 74 7 4539 7483 202927981 202930928 0.000000e+00 4937
12 TraesCS3D01G166900 chr3B 94.266 436 17 3 147 575 202923576 202924010 0.000000e+00 660
13 TraesCS3D01G166900 chr3B 89.172 471 35 5 7064 7518 203347864 203348334 2.460000e-159 573
14 TraesCS3D01G166900 chr3B 88.095 462 39 7 7064 7509 203554479 203554940 1.160000e-147 534
15 TraesCS3D01G166900 chr3B 94.631 149 5 2 1 149 202921130 202921275 2.210000e-55 228
16 TraesCS3D01G166900 chr6A 93.759 1346 60 9 6204 7530 146445054 146443714 0.000000e+00 1999
17 TraesCS3D01G166900 chr6A 87.265 479 36 8 7064 7518 146438785 146438308 2.520000e-144 523
18 TraesCS3D01G166900 chr7D 94.855 311 15 1 7558 7867 54360612 54360922 1.190000e-132 484
19 TraesCS3D01G166900 chr5D 89.443 341 33 3 7529 7867 57088048 57087709 2.030000e-115 427
20 TraesCS3D01G166900 chr5D 90.047 211 16 4 4357 4564 412722761 412722553 1.300000e-67 268
21 TraesCS3D01G166900 chr5B 90.521 211 15 4 4357 4564 709933297 709933505 2.800000e-69 274
22 TraesCS3D01G166900 chr5B 89.103 156 10 4 4888 5036 341516333 341516178 3.750000e-43 187
23 TraesCS3D01G166900 chr5B 89.103 156 10 4 4888 5036 705448563 705448718 3.750000e-43 187
24 TraesCS3D01G166900 chr2D 89.103 156 10 4 4888 5036 459640702 459640547 3.750000e-43 187
25 TraesCS3D01G166900 chrUn 88.462 156 11 4 4888 5036 296044246 296044401 1.740000e-41 182
26 TraesCS3D01G166900 chrUn 88.462 156 11 4 4888 5036 309234651 309234806 1.740000e-41 182
27 TraesCS3D01G166900 chrUn 88.462 156 11 4 4888 5036 313615480 313615635 1.740000e-41 182
28 TraesCS3D01G166900 chr2B 87.821 156 12 4 4888 5036 83711121 83711276 8.110000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G166900 chr3D 141205188 141213054 7866 False 14528.00 14528 100.0000 1 7867 1 chr3D.!!$F1 7866
1 TraesCS3D01G166900 chr3A 159421306 159429566 8260 False 2858.75 6857 90.6975 1 7530 4 chr3A.!!$F2 7529
2 TraesCS3D01G166900 chr3A 159718206 159721123 2917 False 1045.00 1367 93.5690 6142 7530 2 chr3A.!!$F3 1388
3 TraesCS3D01G166900 chr3B 202921130 202930928 9798 False 3024.75 6274 95.2720 1 7483 4 chr3B.!!$F3 7482
4 TraesCS3D01G166900 chr6A 146443714 146445054 1340 True 1999.00 1999 93.7590 6204 7530 1 chr6A.!!$R2 1326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 2987 0.391130 TGGTTCACGCTATGGTGAGC 60.391 55.000 0.00 1.57 46.68 4.26 F
1984 4884 0.249322 TACGATGCCTCTAAAGCGGC 60.249 55.000 3.99 3.99 45.67 6.53 F
2743 5654 0.035317 TGCTTCAGTACAGGGCTGTG 59.965 55.000 0.00 0.00 44.63 3.66 F
3684 6599 1.335689 GCTGGCTGCTTTGCTATATGC 60.336 52.381 9.31 0.00 39.51 3.14 F
5100 8058 0.889186 GGAAAGCCCTGAAGTTCGCA 60.889 55.000 0.00 0.00 0.00 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 4911 0.179092 GCGTCATACCCCACCACTAC 60.179 60.000 0.0 0.00 0.00 2.73 R
3543 6458 1.425448 CCAGAAACTCCCTGTCCCTTT 59.575 52.381 0.0 0.00 0.00 3.11 R
4712 7670 2.995283 TGACATGCTATGCTTCTTGCT 58.005 42.857 0.0 0.00 43.37 3.91 R
5544 8710 0.253160 TAGGAGGTGGGCCATTGTCT 60.253 55.000 10.7 8.54 37.19 3.41 R
7025 11731 4.249661 TCTTGCAGCGTTACACATATTCA 58.750 39.130 0.0 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 5.429130 TCTAAAACACACACCATGTACACA 58.571 37.500 0.00 0.00 40.64 3.72
104 105 7.857389 CACACCATGTACACATATATGCTTTTC 59.143 37.037 12.79 1.40 34.26 2.29
107 108 9.189156 ACCATGTACACATATATGCTTTTCTTT 57.811 29.630 12.79 0.00 34.26 2.52
197 2814 1.293179 CATGCGGGTGTGAGAGTCA 59.707 57.895 0.00 0.00 0.00 3.41
221 2838 2.420687 CCACTGCCCTCCAAATCTAGAC 60.421 54.545 0.00 0.00 0.00 2.59
230 2847 4.627467 CCTCCAAATCTAGACGAACAGTTG 59.373 45.833 0.00 0.00 0.00 3.16
271 2888 5.122396 GTCAATGGTCACAATTGGTAGAGTC 59.878 44.000 10.83 1.80 0.00 3.36
280 2897 5.129485 CACAATTGGTAGAGTCCCTCATACT 59.871 44.000 10.83 0.00 32.06 2.12
307 2924 2.079925 GGCGGGAAGATGAATAGATGC 58.920 52.381 0.00 0.00 0.00 3.91
316 2933 5.276461 AGATGAATAGATGCACGTGGTTA 57.724 39.130 18.88 0.00 0.00 2.85
366 2983 1.204146 AGGATGGTTCACGCTATGGT 58.796 50.000 0.00 0.00 0.00 3.55
370 2987 0.391130 TGGTTCACGCTATGGTGAGC 60.391 55.000 0.00 1.57 46.68 4.26
485 3112 6.549736 GCTACCCCCTATACATTGTTGAAAAT 59.450 38.462 0.00 0.00 0.00 1.82
487 3114 7.891498 ACCCCCTATACATTGTTGAAAATAC 57.109 36.000 0.00 0.00 0.00 1.89
490 3117 8.977412 CCCCCTATACATTGTTGAAAATACTTT 58.023 33.333 0.00 0.00 0.00 2.66
530 3158 7.043565 ACACGGTATGGTCGATAGTTTTATTT 58.956 34.615 0.00 0.00 37.40 1.40
575 3203 7.599998 GCTCCAAATCATAGACAAAAACACATT 59.400 33.333 0.00 0.00 0.00 2.71
578 3206 7.171167 CCAAATCATAGACAAAAACACATTGCA 59.829 33.333 0.00 0.00 0.00 4.08
579 3207 8.549548 CAAATCATAGACAAAAACACATTGCAA 58.450 29.630 0.00 0.00 0.00 4.08
580 3208 7.878477 ATCATAGACAAAAACACATTGCAAG 57.122 32.000 4.94 0.00 0.00 4.01
785 3417 4.003788 CGTCCCACTTGTCCGCCT 62.004 66.667 0.00 0.00 0.00 5.52
872 3750 2.699129 CCCCCACATATGGCACCCA 61.699 63.158 7.80 0.00 45.76 4.51
982 3860 2.863346 CGAGTCCCGGTGTGGTGAA 61.863 63.158 0.00 0.00 35.15 3.18
1203 4081 0.600557 AGATGATGCCGATCGAGGTC 59.399 55.000 18.66 11.28 0.00 3.85
1384 4276 3.274288 GGCTTGTCGATGGAATCTTTCT 58.726 45.455 0.00 0.00 42.58 2.52
1420 4312 1.148048 GAGGGGCAGCTGGAATCTC 59.852 63.158 17.12 0.00 0.00 2.75
1421 4313 1.307691 AGGGGCAGCTGGAATCTCT 60.308 57.895 17.12 0.00 0.00 3.10
1444 4336 5.888105 TCTGTTATTCTAGTCGTTAGCACC 58.112 41.667 0.00 0.00 0.00 5.01
1664 4563 0.727398 GTGATAGGCTTGCCGTGTTC 59.273 55.000 5.95 3.18 0.00 3.18
1665 4564 0.739462 TGATAGGCTTGCCGTGTTCG 60.739 55.000 5.95 0.00 0.00 3.95
1673 4572 2.607187 CTTGCCGTGTTCGATTAGTCT 58.393 47.619 0.00 0.00 39.71 3.24
1674 4573 1.990799 TGCCGTGTTCGATTAGTCTG 58.009 50.000 0.00 0.00 39.71 3.51
1675 4574 1.542472 TGCCGTGTTCGATTAGTCTGA 59.458 47.619 0.00 0.00 39.71 3.27
1676 4575 2.029739 TGCCGTGTTCGATTAGTCTGAA 60.030 45.455 0.00 0.00 39.71 3.02
1705 4604 0.390472 CTGGCTTTCCGTCTGAGTCC 60.390 60.000 0.00 0.00 34.14 3.85
1739 4638 0.661187 AATGCGTGCGTGCTTTCTTG 60.661 50.000 1.52 0.00 35.36 3.02
1863 4762 9.625747 AAAGGGTGTCATTTTTATGTTCAAAAT 57.374 25.926 0.00 0.00 34.75 1.82
1937 4837 1.573108 ACCCAGTGCTGTATACTGCT 58.427 50.000 28.15 12.16 43.19 4.24
1944 4844 3.120199 AGTGCTGTATACTGCTTTTTGCG 60.120 43.478 28.15 0.00 46.63 4.85
1945 4845 3.070748 TGCTGTATACTGCTTTTTGCGA 58.929 40.909 28.15 9.05 46.63 5.10
1946 4846 3.689161 TGCTGTATACTGCTTTTTGCGAT 59.311 39.130 28.15 0.00 46.63 4.58
1947 4847 4.031028 GCTGTATACTGCTTTTTGCGATG 58.969 43.478 23.17 0.00 46.63 3.84
1948 4848 4.437390 GCTGTATACTGCTTTTTGCGATGT 60.437 41.667 23.17 0.00 46.63 3.06
1949 4849 5.216566 TGTATACTGCTTTTTGCGATGTC 57.783 39.130 4.17 0.00 46.63 3.06
1950 4850 4.935205 TGTATACTGCTTTTTGCGATGTCT 59.065 37.500 4.17 0.00 46.63 3.41
1951 4851 2.977405 ACTGCTTTTTGCGATGTCTC 57.023 45.000 0.00 0.00 46.63 3.36
1952 4852 2.498167 ACTGCTTTTTGCGATGTCTCT 58.502 42.857 0.00 0.00 46.63 3.10
1957 4857 6.371548 ACTGCTTTTTGCGATGTCTCTTATTA 59.628 34.615 0.00 0.00 46.63 0.98
1967 4867 6.207213 CGATGTCTCTTATTAGTGGTGGTAC 58.793 44.000 0.00 0.00 0.00 3.34
1983 4883 1.488527 GTACGATGCCTCTAAAGCGG 58.511 55.000 0.00 0.00 0.00 5.52
1984 4884 0.249322 TACGATGCCTCTAAAGCGGC 60.249 55.000 3.99 3.99 45.67 6.53
1994 4901 4.439057 CCTCTAAAGCGGCATTTAGTACA 58.561 43.478 20.82 9.60 41.49 2.90
2002 4909 8.848474 AAAGCGGCATTTAGTACAAGATATAT 57.152 30.769 1.45 0.00 0.00 0.86
2004 4911 9.587772 AAGCGGCATTTAGTACAAGATATATAG 57.412 33.333 1.45 0.00 0.00 1.31
2169 5079 7.554959 AATAAACTAGGACTTCTCCACTTCA 57.445 36.000 0.00 0.00 39.39 3.02
2218 5128 2.553602 GGCTTGATGATTGTGTGTGTGA 59.446 45.455 0.00 0.00 0.00 3.58
2227 5137 5.122519 TGATTGTGTGTGTGATACTGTTGT 58.877 37.500 0.00 0.00 0.00 3.32
2242 5152 9.781834 TGATACTGTTGTTTTGTTTCACTTTAG 57.218 29.630 0.00 0.00 0.00 1.85
2254 5164 5.178623 TGTTTCACTTTAGTGTAAGCATCGG 59.821 40.000 9.53 0.00 45.76 4.18
2268 5178 2.463553 CATCGGTGCATTGCAGTTAG 57.536 50.000 12.53 4.04 40.08 2.34
2454 5365 4.672409 GCATTTCCCTTACAATACTGCAC 58.328 43.478 0.00 0.00 0.00 4.57
2489 5400 2.106683 GGGAATTCGGACACGCCAG 61.107 63.158 0.00 0.00 40.69 4.85
2500 5411 2.288886 GGACACGCCAGTTAAGAAGACT 60.289 50.000 0.00 0.00 36.34 3.24
2630 5541 2.481952 GAGTCAACAGATCAACACCTGC 59.518 50.000 0.00 0.00 33.90 4.85
2743 5654 0.035317 TGCTTCAGTACAGGGCTGTG 59.965 55.000 0.00 0.00 44.63 3.66
3066 5981 7.906611 TTGATTGTGTTTCTTTTATGTCACG 57.093 32.000 0.00 0.00 0.00 4.35
3099 6014 3.821033 GGGGACATTGCTGGACATTATAC 59.179 47.826 0.00 0.00 0.00 1.47
3588 6503 3.069729 AGGCGTTTATCTATCACAGACCC 59.930 47.826 0.00 0.00 35.62 4.46
3591 6506 4.441634 GCGTTTATCTATCACAGACCCTGT 60.442 45.833 0.00 0.00 46.51 4.00
3684 6599 1.335689 GCTGGCTGCTTTGCTATATGC 60.336 52.381 9.31 0.00 39.51 3.14
4264 7179 6.649155 AGTAAACAAATCCTTGGCTTTTTGT 58.351 32.000 8.38 8.38 42.40 2.83
4528 7444 4.222810 AGCATTTGGGGTTTTAGTTCCATC 59.777 41.667 0.00 0.00 0.00 3.51
4559 7476 3.119495 TGTCATGACACCTAGATGTGACG 60.119 47.826 24.56 0.00 39.57 4.35
4666 7621 5.488341 TCCTCCAGTTTAGCATTTAGACAC 58.512 41.667 0.00 0.00 0.00 3.67
4710 7668 6.226988 GGCAACAAATAGGTTTTTCATGTG 57.773 37.500 0.00 0.00 0.00 3.21
4711 7669 5.988561 GGCAACAAATAGGTTTTTCATGTGA 59.011 36.000 0.00 0.00 0.00 3.58
4712 7670 6.481644 GGCAACAAATAGGTTTTTCATGTGAA 59.518 34.615 0.00 0.00 0.00 3.18
4713 7671 7.307337 GGCAACAAATAGGTTTTTCATGTGAAG 60.307 37.037 0.00 0.00 35.21 3.02
4714 7672 7.566709 CAACAAATAGGTTTTTCATGTGAAGC 58.433 34.615 0.00 0.00 35.21 3.86
4715 7673 6.815089 ACAAATAGGTTTTTCATGTGAAGCA 58.185 32.000 0.00 0.00 35.21 3.91
4716 7674 7.271511 ACAAATAGGTTTTTCATGTGAAGCAA 58.728 30.769 0.00 0.00 35.21 3.91
4817 7775 5.009610 GTGTTGAATAGCAGAACTTGGGAAA 59.990 40.000 0.00 0.00 0.00 3.13
4832 7790 4.240881 TGGGAAAGGAAGGATGATGAAG 57.759 45.455 0.00 0.00 0.00 3.02
4841 7799 6.962182 AGGAAGGATGATGAAGTGTTGATTA 58.038 36.000 0.00 0.00 0.00 1.75
4959 7917 9.104713 ACATACATATTGAGTAGGGATCAATCA 57.895 33.333 4.56 0.00 44.27 2.57
4960 7918 9.597170 CATACATATTGAGTAGGGATCAATCAG 57.403 37.037 4.56 2.62 44.27 2.90
4981 7939 6.175471 TCAGTGCATTGTCTTATTCACAGAT 58.825 36.000 9.23 0.00 0.00 2.90
5100 8058 0.889186 GGAAAGCCCTGAAGTTCGCA 60.889 55.000 0.00 0.00 0.00 5.10
5137 8095 6.566197 AGTCAAGATTGAGGATGTTTTGTC 57.434 37.500 0.00 0.00 37.98 3.18
5150 8108 8.048534 AGGATGTTTTGTCTGACATGATTAAG 57.951 34.615 11.86 0.00 36.67 1.85
5154 8112 7.639039 TGTTTTGTCTGACATGATTAAGACAC 58.361 34.615 11.86 11.04 46.42 3.67
5222 8387 5.862845 AGAACATCACAAGAACTGTCATCT 58.137 37.500 0.00 0.00 35.47 2.90
5257 8422 7.486551 TGTCAATCTTTTGTTTAAGTGGAAACG 59.513 33.333 0.00 0.00 41.36 3.60
5480 8646 5.278808 GCAACTAGGGAAACAAACCTAAAGG 60.279 44.000 0.00 0.00 38.78 3.11
5544 8710 4.752879 GCCGCCGACCAGCTGTAA 62.753 66.667 13.81 0.00 0.00 2.41
5663 8829 2.228822 CCAGCGGTCTAATTTGCTTGTT 59.771 45.455 0.00 0.00 34.99 2.83
5808 8974 8.314021 TCTAAAAGAGAGTAGATGCATTGAACA 58.686 33.333 0.00 0.00 0.00 3.18
6894 11598 9.325198 ACCCAGATCAACATTTTTAACTTTTTC 57.675 29.630 0.00 0.00 0.00 2.29
6948 11653 3.191371 CCAGGAGGTCAGTTTTTACATGC 59.809 47.826 0.00 0.00 0.00 4.06
7397 12121 1.030457 CATCCAGCATTTCAGGAGCC 58.970 55.000 0.00 0.00 33.58 4.70
7523 12247 6.930475 AGGACCTACAGTACATATTTAGGGA 58.070 40.000 0.00 0.00 34.67 4.20
7530 12254 9.765795 CTACAGTACATATTTAGGGAAAAGGAG 57.234 37.037 0.00 0.00 0.00 3.69
7531 12255 8.388656 ACAGTACATATTTAGGGAAAAGGAGA 57.611 34.615 0.00 0.00 0.00 3.71
7532 12256 8.832735 ACAGTACATATTTAGGGAAAAGGAGAA 58.167 33.333 0.00 0.00 0.00 2.87
7533 12257 9.110502 CAGTACATATTTAGGGAAAAGGAGAAC 57.889 37.037 0.00 0.00 0.00 3.01
7534 12258 8.832735 AGTACATATTTAGGGAAAAGGAGAACA 58.167 33.333 0.00 0.00 0.00 3.18
7535 12259 9.628500 GTACATATTTAGGGAAAAGGAGAACAT 57.372 33.333 0.00 0.00 0.00 2.71
7540 12264 8.986929 ATTTAGGGAAAAGGAGAACATATCTG 57.013 34.615 0.00 0.00 38.96 2.90
7541 12265 5.379706 AGGGAAAAGGAGAACATATCTGG 57.620 43.478 0.00 0.00 38.96 3.86
7542 12266 4.790790 AGGGAAAAGGAGAACATATCTGGT 59.209 41.667 0.00 0.00 38.96 4.00
7543 12267 4.884164 GGGAAAAGGAGAACATATCTGGTG 59.116 45.833 0.00 0.00 38.96 4.17
7544 12268 5.339200 GGGAAAAGGAGAACATATCTGGTGA 60.339 44.000 0.00 0.00 38.96 4.02
7545 12269 6.360618 GGAAAAGGAGAACATATCTGGTGAT 58.639 40.000 0.00 0.00 38.96 3.06
7546 12270 7.420214 GGGAAAAGGAGAACATATCTGGTGATA 60.420 40.741 0.00 0.00 38.96 2.15
7547 12271 7.442666 GGAAAAGGAGAACATATCTGGTGATAC 59.557 40.741 0.00 0.00 38.96 2.24
7548 12272 5.713792 AGGAGAACATATCTGGTGATACG 57.286 43.478 0.00 0.00 38.96 3.06
7549 12273 4.524714 AGGAGAACATATCTGGTGATACGG 59.475 45.833 0.00 0.00 38.96 4.02
7550 12274 4.238514 GAGAACATATCTGGTGATACGGC 58.761 47.826 0.00 0.00 38.96 5.68
7551 12275 3.898123 AGAACATATCTGGTGATACGGCT 59.102 43.478 0.00 0.00 37.92 5.52
7552 12276 5.077564 AGAACATATCTGGTGATACGGCTA 58.922 41.667 0.00 0.00 37.92 3.93
7553 12277 4.785511 ACATATCTGGTGATACGGCTAC 57.214 45.455 0.00 0.00 37.92 3.58
7554 12278 3.510360 ACATATCTGGTGATACGGCTACC 59.490 47.826 0.00 0.00 37.92 3.18
7555 12279 2.383442 ATCTGGTGATACGGCTACCT 57.617 50.000 0.00 0.00 35.51 3.08
7556 12280 3.520691 ATCTGGTGATACGGCTACCTA 57.479 47.619 0.00 0.00 35.51 3.08
7557 12281 2.860009 TCTGGTGATACGGCTACCTAG 58.140 52.381 0.00 0.00 35.51 3.02
7558 12282 1.887198 CTGGTGATACGGCTACCTAGG 59.113 57.143 7.41 7.41 35.51 3.02
7559 12283 1.216175 TGGTGATACGGCTACCTAGGT 59.784 52.381 20.57 20.57 35.51 3.08
7560 12284 1.612463 GGTGATACGGCTACCTAGGTG 59.388 57.143 25.33 14.94 0.00 4.00
7561 12285 2.579873 GTGATACGGCTACCTAGGTGA 58.420 52.381 25.33 7.72 0.00 4.02
7562 12286 3.155501 GTGATACGGCTACCTAGGTGAT 58.844 50.000 25.33 7.70 0.00 3.06
7563 12287 4.330250 GTGATACGGCTACCTAGGTGATA 58.670 47.826 25.33 9.42 0.00 2.15
7564 12288 4.155644 GTGATACGGCTACCTAGGTGATAC 59.844 50.000 25.33 10.39 0.00 2.24
7565 12289 2.742428 ACGGCTACCTAGGTGATACA 57.258 50.000 25.33 2.55 0.00 2.29
7566 12290 3.022557 ACGGCTACCTAGGTGATACAA 57.977 47.619 25.33 1.73 0.00 2.41
7567 12291 3.573695 ACGGCTACCTAGGTGATACAAT 58.426 45.455 25.33 0.94 0.00 2.71
7568 12292 3.321111 ACGGCTACCTAGGTGATACAATG 59.679 47.826 25.33 8.25 0.00 2.82
7569 12293 3.665190 GGCTACCTAGGTGATACAATGC 58.335 50.000 25.33 13.70 0.00 3.56
7570 12294 3.325135 GGCTACCTAGGTGATACAATGCT 59.675 47.826 25.33 0.00 0.00 3.79
7571 12295 4.561105 GCTACCTAGGTGATACAATGCTC 58.439 47.826 25.33 0.00 0.00 4.26
7572 12296 4.561734 GCTACCTAGGTGATACAATGCTCC 60.562 50.000 25.33 0.00 0.00 4.70
7573 12297 3.384168 ACCTAGGTGATACAATGCTCCA 58.616 45.455 15.42 0.00 0.00 3.86
7574 12298 3.389329 ACCTAGGTGATACAATGCTCCAG 59.611 47.826 15.42 0.00 0.00 3.86
7575 12299 3.389329 CCTAGGTGATACAATGCTCCAGT 59.611 47.826 0.00 0.00 0.00 4.00
7576 12300 3.272574 AGGTGATACAATGCTCCAGTG 57.727 47.619 0.00 0.00 35.46 3.66
7577 12301 2.573462 AGGTGATACAATGCTCCAGTGT 59.427 45.455 3.76 3.76 44.74 3.55
7578 12302 2.679837 GGTGATACAATGCTCCAGTGTG 59.320 50.000 8.38 0.00 42.61 3.82
7579 12303 3.338249 GTGATACAATGCTCCAGTGTGT 58.662 45.455 8.38 1.94 42.61 3.72
7580 12304 3.753272 GTGATACAATGCTCCAGTGTGTT 59.247 43.478 8.38 0.00 42.61 3.32
7581 12305 4.935205 GTGATACAATGCTCCAGTGTGTTA 59.065 41.667 8.38 0.00 42.61 2.41
7582 12306 5.586243 GTGATACAATGCTCCAGTGTGTTAT 59.414 40.000 8.38 0.00 42.61 1.89
7583 12307 5.585844 TGATACAATGCTCCAGTGTGTTATG 59.414 40.000 8.38 0.00 42.61 1.90
7584 12308 4.019792 ACAATGCTCCAGTGTGTTATGA 57.980 40.909 0.00 0.00 41.15 2.15
7585 12309 4.005650 ACAATGCTCCAGTGTGTTATGAG 58.994 43.478 0.00 0.00 41.15 2.90
7586 12310 2.099141 TGCTCCAGTGTGTTATGAGC 57.901 50.000 9.18 9.18 46.60 4.26
7587 12311 1.339055 TGCTCCAGTGTGTTATGAGCC 60.339 52.381 12.43 0.00 46.02 4.70
7588 12312 1.645034 CTCCAGTGTGTTATGAGCCG 58.355 55.000 0.00 0.00 0.00 5.52
7589 12313 0.973632 TCCAGTGTGTTATGAGCCGT 59.026 50.000 0.00 0.00 0.00 5.68
7590 12314 1.346395 TCCAGTGTGTTATGAGCCGTT 59.654 47.619 0.00 0.00 0.00 4.44
7591 12315 1.464608 CCAGTGTGTTATGAGCCGTTG 59.535 52.381 0.00 0.00 0.00 4.10
7592 12316 1.464608 CAGTGTGTTATGAGCCGTTGG 59.535 52.381 0.00 0.00 0.00 3.77
7593 12317 1.346395 AGTGTGTTATGAGCCGTTGGA 59.654 47.619 0.00 0.00 0.00 3.53
7594 12318 2.027192 AGTGTGTTATGAGCCGTTGGAT 60.027 45.455 0.00 0.00 0.00 3.41
7595 12319 2.351726 GTGTGTTATGAGCCGTTGGATC 59.648 50.000 0.00 0.00 38.78 3.36
7599 12323 4.223800 TGAGCCGTTGGATCATGC 57.776 55.556 0.00 0.00 43.58 4.06
7600 12324 1.603842 TGAGCCGTTGGATCATGCT 59.396 52.632 0.00 0.00 43.58 3.79
7601 12325 0.462581 TGAGCCGTTGGATCATGCTC 60.463 55.000 0.00 11.78 43.58 4.26
7602 12326 0.462581 GAGCCGTTGGATCATGCTCA 60.463 55.000 13.09 0.00 45.90 4.26
7603 12327 0.035152 AGCCGTTGGATCATGCTCAA 60.035 50.000 0.00 0.00 0.00 3.02
7604 12328 0.810648 GCCGTTGGATCATGCTCAAA 59.189 50.000 0.00 0.00 0.00 2.69
7605 12329 1.202222 GCCGTTGGATCATGCTCAAAG 60.202 52.381 0.00 1.19 0.00 2.77
7606 12330 1.402968 CCGTTGGATCATGCTCAAAGG 59.597 52.381 10.81 10.81 34.76 3.11
7607 12331 1.402968 CGTTGGATCATGCTCAAAGGG 59.597 52.381 0.00 0.00 0.00 3.95
7608 12332 2.726821 GTTGGATCATGCTCAAAGGGA 58.273 47.619 0.00 0.00 0.00 4.20
7609 12333 2.424956 GTTGGATCATGCTCAAAGGGAC 59.575 50.000 0.00 0.00 0.00 4.46
7610 12334 1.634973 TGGATCATGCTCAAAGGGACA 59.365 47.619 0.00 0.00 0.00 4.02
7611 12335 2.041485 TGGATCATGCTCAAAGGGACAA 59.959 45.455 0.00 0.00 0.00 3.18
7612 12336 2.686915 GGATCATGCTCAAAGGGACAAG 59.313 50.000 0.00 0.00 0.00 3.16
7613 12337 3.614092 GATCATGCTCAAAGGGACAAGA 58.386 45.455 0.00 0.00 0.00 3.02
7614 12338 3.726557 TCATGCTCAAAGGGACAAGAT 57.273 42.857 0.00 0.00 0.00 2.40
7615 12339 3.349927 TCATGCTCAAAGGGACAAGATG 58.650 45.455 0.00 0.00 0.00 2.90
7616 12340 1.538047 TGCTCAAAGGGACAAGATGC 58.462 50.000 0.00 0.00 0.00 3.91
7617 12341 1.202915 TGCTCAAAGGGACAAGATGCA 60.203 47.619 0.00 0.00 0.00 3.96
7618 12342 2.097825 GCTCAAAGGGACAAGATGCAT 58.902 47.619 0.00 0.00 0.00 3.96
7619 12343 2.159282 GCTCAAAGGGACAAGATGCATG 60.159 50.000 2.46 0.00 0.00 4.06
7620 12344 1.820519 TCAAAGGGACAAGATGCATGC 59.179 47.619 11.82 11.82 0.00 4.06
7621 12345 1.546923 CAAAGGGACAAGATGCATGCA 59.453 47.619 25.04 25.04 0.00 3.96
7622 12346 1.180029 AAGGGACAAGATGCATGCAC 58.820 50.000 25.37 16.77 0.00 4.57
7623 12347 0.038599 AGGGACAAGATGCATGCACA 59.961 50.000 25.37 0.00 0.00 4.57
7624 12348 0.171903 GGGACAAGATGCATGCACAC 59.828 55.000 25.37 19.70 0.00 3.82
7625 12349 0.179181 GGACAAGATGCATGCACACG 60.179 55.000 25.37 14.26 0.00 4.49
7626 12350 0.518636 GACAAGATGCATGCACACGT 59.481 50.000 25.37 17.53 0.00 4.49
7627 12351 0.239082 ACAAGATGCATGCACACGTG 59.761 50.000 25.37 26.55 35.78 4.49
7628 12352 0.518195 CAAGATGCATGCACACGTGA 59.482 50.000 25.37 0.00 34.49 4.35
7629 12353 0.518636 AAGATGCATGCACACGTGAC 59.481 50.000 25.37 14.38 34.49 3.67
7630 12354 1.225827 GATGCATGCACACGTGACG 60.226 57.895 25.37 13.91 34.49 4.35
7631 12355 2.567470 GATGCATGCACACGTGACGG 62.567 60.000 25.37 12.22 34.49 4.79
7632 12356 3.345808 GCATGCACACGTGACGGT 61.346 61.111 25.01 1.13 34.49 4.83
7633 12357 2.853210 CATGCACACGTGACGGTC 59.147 61.111 25.01 0.00 34.49 4.79
7634 12358 1.953642 CATGCACACGTGACGGTCA 60.954 57.895 25.01 6.76 34.49 4.02
7635 12359 1.664649 ATGCACACGTGACGGTCAG 60.665 57.895 25.01 8.39 0.00 3.51
7636 12360 3.702555 GCACACGTGACGGTCAGC 61.703 66.667 25.01 7.32 0.00 4.26
7637 12361 2.027605 CACACGTGACGGTCAGCT 59.972 61.111 25.01 0.00 0.00 4.24
7638 12362 2.027605 ACACGTGACGGTCAGCTG 59.972 61.111 25.01 7.63 0.00 4.24
7639 12363 3.406361 CACGTGACGGTCAGCTGC 61.406 66.667 10.90 4.04 0.00 5.25
7640 12364 3.606662 ACGTGACGGTCAGCTGCT 61.607 61.111 11.83 0.00 0.00 4.24
7641 12365 2.356313 CGTGACGGTCAGCTGCTT 60.356 61.111 11.83 0.00 0.00 3.91
7642 12366 2.375766 CGTGACGGTCAGCTGCTTC 61.376 63.158 11.83 2.84 0.00 3.86
7643 12367 1.300931 GTGACGGTCAGCTGCTTCA 60.301 57.895 11.83 5.59 0.00 3.02
7644 12368 1.300931 TGACGGTCAGCTGCTTCAC 60.301 57.895 9.47 1.15 0.00 3.18
7645 12369 2.029844 GACGGTCAGCTGCTTCACC 61.030 63.158 9.47 10.64 0.00 4.02
7646 12370 2.031012 CGGTCAGCTGCTTCACCA 59.969 61.111 21.68 0.00 0.00 4.17
7647 12371 1.376424 CGGTCAGCTGCTTCACCAT 60.376 57.895 21.68 0.00 0.00 3.55
7648 12372 1.642037 CGGTCAGCTGCTTCACCATG 61.642 60.000 21.68 7.77 0.00 3.66
7649 12373 0.321919 GGTCAGCTGCTTCACCATGA 60.322 55.000 18.57 2.54 0.00 3.07
7650 12374 1.527034 GTCAGCTGCTTCACCATGAA 58.473 50.000 9.47 0.00 34.79 2.57
7651 12375 1.881973 GTCAGCTGCTTCACCATGAAA 59.118 47.619 9.47 0.00 35.73 2.69
7652 12376 2.490903 GTCAGCTGCTTCACCATGAAAT 59.509 45.455 9.47 0.00 35.73 2.17
7653 12377 3.691118 GTCAGCTGCTTCACCATGAAATA 59.309 43.478 9.47 0.00 35.73 1.40
7654 12378 4.337555 GTCAGCTGCTTCACCATGAAATAT 59.662 41.667 9.47 0.00 35.73 1.28
7655 12379 4.951715 TCAGCTGCTTCACCATGAAATATT 59.048 37.500 9.47 0.00 35.73 1.28
7656 12380 5.066893 TCAGCTGCTTCACCATGAAATATTC 59.933 40.000 9.47 0.00 35.73 1.75
7657 12381 4.951715 AGCTGCTTCACCATGAAATATTCA 59.048 37.500 0.00 0.00 45.01 2.57
7658 12382 5.419788 AGCTGCTTCACCATGAAATATTCAA 59.580 36.000 0.00 0.00 43.95 2.69
7659 12383 6.071221 AGCTGCTTCACCATGAAATATTCAAA 60.071 34.615 0.00 0.00 43.95 2.69
7660 12384 6.591062 GCTGCTTCACCATGAAATATTCAAAA 59.409 34.615 0.00 0.00 43.95 2.44
7661 12385 7.118101 GCTGCTTCACCATGAAATATTCAAAAA 59.882 33.333 0.00 0.00 43.95 1.94
7680 12404 5.675684 AAAAACACCCTGAACACATTCTT 57.324 34.783 0.00 0.00 35.69 2.52
7681 12405 6.783708 AAAAACACCCTGAACACATTCTTA 57.216 33.333 0.00 0.00 35.69 2.10
7682 12406 6.783708 AAAACACCCTGAACACATTCTTAA 57.216 33.333 0.00 0.00 35.69 1.85
7683 12407 6.976934 AAACACCCTGAACACATTCTTAAT 57.023 33.333 0.00 0.00 35.69 1.40
7684 12408 6.976934 AACACCCTGAACACATTCTTAATT 57.023 33.333 0.00 0.00 35.69 1.40
7685 12409 6.331369 ACACCCTGAACACATTCTTAATTG 57.669 37.500 0.00 0.00 35.69 2.32
7686 12410 6.068010 ACACCCTGAACACATTCTTAATTGA 58.932 36.000 0.00 0.00 35.69 2.57
7687 12411 6.207417 ACACCCTGAACACATTCTTAATTGAG 59.793 38.462 0.00 0.00 35.69 3.02
7688 12412 5.711976 ACCCTGAACACATTCTTAATTGAGG 59.288 40.000 0.00 0.00 35.69 3.86
7689 12413 5.126061 CCCTGAACACATTCTTAATTGAGGG 59.874 44.000 0.00 0.00 33.94 4.30
7690 12414 5.393461 CCTGAACACATTCTTAATTGAGGGC 60.393 44.000 0.00 0.00 35.69 5.19
7691 12415 5.076182 TGAACACATTCTTAATTGAGGGCA 58.924 37.500 0.00 0.00 35.69 5.36
7692 12416 5.538053 TGAACACATTCTTAATTGAGGGCAA 59.462 36.000 0.00 0.00 35.65 4.52
7693 12417 5.649782 ACACATTCTTAATTGAGGGCAAG 57.350 39.130 0.00 0.00 37.45 4.01
7694 12418 4.463891 ACACATTCTTAATTGAGGGCAAGG 59.536 41.667 0.00 0.00 37.45 3.61
7695 12419 3.448660 ACATTCTTAATTGAGGGCAAGGC 59.551 43.478 0.00 0.00 37.45 4.35
7696 12420 3.456380 TTCTTAATTGAGGGCAAGGCT 57.544 42.857 0.00 0.00 37.45 4.58
7697 12421 2.726821 TCTTAATTGAGGGCAAGGCTG 58.273 47.619 0.00 0.00 37.45 4.85
7698 12422 2.308570 TCTTAATTGAGGGCAAGGCTGA 59.691 45.455 0.00 0.00 37.45 4.26
7699 12423 2.897271 TAATTGAGGGCAAGGCTGAA 57.103 45.000 0.00 0.00 37.45 3.02
7700 12424 1.553706 AATTGAGGGCAAGGCTGAAG 58.446 50.000 0.00 0.00 37.45 3.02
7701 12425 0.969409 ATTGAGGGCAAGGCTGAAGC 60.969 55.000 0.00 0.00 37.45 3.86
7702 12426 2.034687 GAGGGCAAGGCTGAAGCA 59.965 61.111 4.43 0.00 44.36 3.91
7703 12427 1.604593 GAGGGCAAGGCTGAAGCAA 60.605 57.895 4.43 0.00 44.36 3.91
7704 12428 0.969409 GAGGGCAAGGCTGAAGCAAT 60.969 55.000 4.43 0.00 44.36 3.56
7705 12429 0.969409 AGGGCAAGGCTGAAGCAATC 60.969 55.000 4.43 0.00 44.36 2.67
7706 12430 1.252904 GGGCAAGGCTGAAGCAATCA 61.253 55.000 4.43 0.00 44.36 2.57
7739 12463 7.599630 TTTATTTGCATTTCCTCAGATTTGC 57.400 32.000 0.00 0.00 33.20 3.68
7740 12464 3.598019 TTGCATTTCCTCAGATTTGCC 57.402 42.857 0.00 0.00 32.16 4.52
7741 12465 1.826720 TGCATTTCCTCAGATTTGCCC 59.173 47.619 0.00 0.00 32.16 5.36
7742 12466 1.826720 GCATTTCCTCAGATTTGCCCA 59.173 47.619 0.00 0.00 0.00 5.36
7743 12467 2.433239 GCATTTCCTCAGATTTGCCCAT 59.567 45.455 0.00 0.00 0.00 4.00
7744 12468 3.118519 GCATTTCCTCAGATTTGCCCATT 60.119 43.478 0.00 0.00 0.00 3.16
7745 12469 4.624604 GCATTTCCTCAGATTTGCCCATTT 60.625 41.667 0.00 0.00 0.00 2.32
7746 12470 5.493809 CATTTCCTCAGATTTGCCCATTTT 58.506 37.500 0.00 0.00 0.00 1.82
7747 12471 5.565455 TTTCCTCAGATTTGCCCATTTTT 57.435 34.783 0.00 0.00 0.00 1.94
7748 12472 6.678568 TTTCCTCAGATTTGCCCATTTTTA 57.321 33.333 0.00 0.00 0.00 1.52
7749 12473 6.872585 TTCCTCAGATTTGCCCATTTTTAT 57.127 33.333 0.00 0.00 0.00 1.40
7750 12474 6.872585 TCCTCAGATTTGCCCATTTTTATT 57.127 33.333 0.00 0.00 0.00 1.40
7751 12475 7.256494 TCCTCAGATTTGCCCATTTTTATTT 57.744 32.000 0.00 0.00 0.00 1.40
7752 12476 8.372877 TCCTCAGATTTGCCCATTTTTATTTA 57.627 30.769 0.00 0.00 0.00 1.40
7753 12477 8.477256 TCCTCAGATTTGCCCATTTTTATTTAG 58.523 33.333 0.00 0.00 0.00 1.85
7754 12478 7.225341 CCTCAGATTTGCCCATTTTTATTTAGC 59.775 37.037 0.00 0.00 0.00 3.09
7755 12479 7.619050 TCAGATTTGCCCATTTTTATTTAGCA 58.381 30.769 0.00 0.00 0.00 3.49
7756 12480 7.765360 TCAGATTTGCCCATTTTTATTTAGCAG 59.235 33.333 0.00 0.00 0.00 4.24
7757 12481 6.539826 AGATTTGCCCATTTTTATTTAGCAGC 59.460 34.615 0.00 0.00 0.00 5.25
7758 12482 4.815533 TGCCCATTTTTATTTAGCAGCA 57.184 36.364 0.00 0.00 0.00 4.41
7759 12483 5.356291 TGCCCATTTTTATTTAGCAGCAT 57.644 34.783 0.00 0.00 0.00 3.79
7760 12484 6.477053 TGCCCATTTTTATTTAGCAGCATA 57.523 33.333 0.00 0.00 0.00 3.14
7761 12485 6.514947 TGCCCATTTTTATTTAGCAGCATAG 58.485 36.000 0.00 0.00 0.00 2.23
7762 12486 5.928264 GCCCATTTTTATTTAGCAGCATAGG 59.072 40.000 0.00 0.00 0.00 2.57
7763 12487 6.462909 GCCCATTTTTATTTAGCAGCATAGGT 60.463 38.462 0.00 0.00 0.00 3.08
7764 12488 6.925165 CCCATTTTTATTTAGCAGCATAGGTG 59.075 38.462 0.00 0.00 0.00 4.00
7782 12506 8.994429 CATAGGTGCATTTTAATTAACCACAA 57.006 30.769 0.00 0.00 0.00 3.33
7783 12507 9.086336 CATAGGTGCATTTTAATTAACCACAAG 57.914 33.333 0.00 0.00 0.00 3.16
7784 12508 7.296628 AGGTGCATTTTAATTAACCACAAGA 57.703 32.000 0.00 0.00 0.00 3.02
7785 12509 7.906327 AGGTGCATTTTAATTAACCACAAGAT 58.094 30.769 0.00 0.00 0.00 2.40
7786 12510 8.374743 AGGTGCATTTTAATTAACCACAAGATT 58.625 29.630 0.00 0.00 0.00 2.40
7787 12511 8.655970 GGTGCATTTTAATTAACCACAAGATTC 58.344 33.333 0.00 0.00 0.00 2.52
7788 12512 9.202273 GTGCATTTTAATTAACCACAAGATTCA 57.798 29.630 0.00 0.00 0.00 2.57
7789 12513 9.202273 TGCATTTTAATTAACCACAAGATTCAC 57.798 29.630 0.00 0.00 0.00 3.18
7790 12514 9.423061 GCATTTTAATTAACCACAAGATTCACT 57.577 29.630 0.00 0.00 0.00 3.41
7795 12519 7.823745 AATTAACCACAAGATTCACTCAAGT 57.176 32.000 0.00 0.00 0.00 3.16
7796 12520 8.918202 AATTAACCACAAGATTCACTCAAGTA 57.082 30.769 0.00 0.00 0.00 2.24
7797 12521 8.918202 ATTAACCACAAGATTCACTCAAGTAA 57.082 30.769 0.00 0.00 0.00 2.24
7798 12522 8.740123 TTAACCACAAGATTCACTCAAGTAAA 57.260 30.769 0.00 0.00 0.00 2.01
7799 12523 7.823745 AACCACAAGATTCACTCAAGTAAAT 57.176 32.000 0.00 0.00 0.00 1.40
7800 12524 7.823745 ACCACAAGATTCACTCAAGTAAATT 57.176 32.000 0.00 0.00 0.00 1.82
7801 12525 8.237811 ACCACAAGATTCACTCAAGTAAATTT 57.762 30.769 0.00 0.00 0.00 1.82
7802 12526 8.137437 ACCACAAGATTCACTCAAGTAAATTTG 58.863 33.333 0.00 0.00 0.00 2.32
7803 12527 7.115378 CCACAAGATTCACTCAAGTAAATTTGC 59.885 37.037 0.00 0.00 0.00 3.68
7804 12528 7.864379 CACAAGATTCACTCAAGTAAATTTGCT 59.136 33.333 2.58 2.58 0.00 3.91
7805 12529 8.416329 ACAAGATTCACTCAAGTAAATTTGCTT 58.584 29.630 14.90 14.90 33.23 3.91
7806 12530 8.909671 CAAGATTCACTCAAGTAAATTTGCTTC 58.090 33.333 17.39 5.57 30.47 3.86
7807 12531 7.597386 AGATTCACTCAAGTAAATTTGCTTCC 58.403 34.615 17.39 2.28 30.47 3.46
7808 12532 6.959639 TTCACTCAAGTAAATTTGCTTCCT 57.040 33.333 17.39 1.97 30.47 3.36
7809 12533 6.560253 TCACTCAAGTAAATTTGCTTCCTC 57.440 37.500 17.39 0.00 30.47 3.71
7810 12534 6.299141 TCACTCAAGTAAATTTGCTTCCTCT 58.701 36.000 17.39 0.00 30.47 3.69
7811 12535 6.772716 TCACTCAAGTAAATTTGCTTCCTCTT 59.227 34.615 17.39 0.00 30.47 2.85
7812 12536 7.285401 TCACTCAAGTAAATTTGCTTCCTCTTT 59.715 33.333 17.39 0.00 30.47 2.52
7813 12537 8.567948 CACTCAAGTAAATTTGCTTCCTCTTTA 58.432 33.333 17.39 0.00 30.47 1.85
7814 12538 9.131791 ACTCAAGTAAATTTGCTTCCTCTTTAA 57.868 29.630 17.39 0.00 30.47 1.52
7815 12539 9.617975 CTCAAGTAAATTTGCTTCCTCTTTAAG 57.382 33.333 17.39 5.04 30.47 1.85
7816 12540 9.349713 TCAAGTAAATTTGCTTCCTCTTTAAGA 57.650 29.630 17.39 7.07 30.47 2.10
7823 12547 9.591792 AATTTGCTTCCTCTTTAAGATAAATGC 57.408 29.630 0.00 0.00 30.01 3.56
7824 12548 6.699575 TGCTTCCTCTTTAAGATAAATGCC 57.300 37.500 0.00 0.00 0.00 4.40
7825 12549 6.186957 TGCTTCCTCTTTAAGATAAATGCCA 58.813 36.000 0.00 0.00 0.00 4.92
7826 12550 6.663093 TGCTTCCTCTTTAAGATAAATGCCAA 59.337 34.615 0.00 0.00 0.00 4.52
7827 12551 7.178274 TGCTTCCTCTTTAAGATAAATGCCAAA 59.822 33.333 0.00 0.00 0.00 3.28
7828 12552 8.034804 GCTTCCTCTTTAAGATAAATGCCAAAA 58.965 33.333 0.00 0.00 0.00 2.44
7829 12553 9.578439 CTTCCTCTTTAAGATAAATGCCAAAAG 57.422 33.333 0.00 0.00 0.00 2.27
7830 12554 8.650143 TCCTCTTTAAGATAAATGCCAAAAGT 57.350 30.769 0.00 0.00 0.00 2.66
7831 12555 9.088987 TCCTCTTTAAGATAAATGCCAAAAGTT 57.911 29.630 0.00 0.00 0.00 2.66
7832 12556 9.710900 CCTCTTTAAGATAAATGCCAAAAGTTT 57.289 29.630 0.00 0.00 0.00 2.66
7838 12562 7.425577 AGATAAATGCCAAAAGTTTCTTTGC 57.574 32.000 0.00 0.00 35.38 3.68
7839 12563 4.534794 AAATGCCAAAAGTTTCTTTGCG 57.465 36.364 0.00 0.00 35.38 4.85
7840 12564 2.663826 TGCCAAAAGTTTCTTTGCGT 57.336 40.000 0.00 0.00 35.38 5.24
7841 12565 2.266554 TGCCAAAAGTTTCTTTGCGTG 58.733 42.857 0.00 0.00 35.38 5.34
7842 12566 1.005032 GCCAAAAGTTTCTTTGCGTGC 60.005 47.619 0.00 0.00 35.38 5.34
7843 12567 2.539476 CCAAAAGTTTCTTTGCGTGCT 58.461 42.857 0.00 0.00 35.38 4.40
7844 12568 2.535574 CCAAAAGTTTCTTTGCGTGCTC 59.464 45.455 0.00 0.00 35.38 4.26
7845 12569 3.438360 CAAAAGTTTCTTTGCGTGCTCT 58.562 40.909 0.00 0.00 30.03 4.09
7846 12570 3.340337 AAAGTTTCTTTGCGTGCTCTC 57.660 42.857 0.00 0.00 0.00 3.20
7847 12571 2.246719 AGTTTCTTTGCGTGCTCTCT 57.753 45.000 0.00 0.00 0.00 3.10
7848 12572 3.386768 AGTTTCTTTGCGTGCTCTCTA 57.613 42.857 0.00 0.00 0.00 2.43
7849 12573 3.060602 AGTTTCTTTGCGTGCTCTCTAC 58.939 45.455 0.00 0.00 0.00 2.59
7850 12574 2.800544 GTTTCTTTGCGTGCTCTCTACA 59.199 45.455 0.00 0.00 0.00 2.74
7851 12575 2.812358 TCTTTGCGTGCTCTCTACAA 57.188 45.000 0.00 0.00 0.00 2.41
7852 12576 3.106242 TCTTTGCGTGCTCTCTACAAA 57.894 42.857 0.00 0.00 0.00 2.83
7853 12577 3.462982 TCTTTGCGTGCTCTCTACAAAA 58.537 40.909 0.00 0.00 30.51 2.44
7854 12578 3.247648 TCTTTGCGTGCTCTCTACAAAAC 59.752 43.478 0.00 0.00 30.51 2.43
7855 12579 2.526304 TGCGTGCTCTCTACAAAACT 57.474 45.000 0.00 0.00 0.00 2.66
7856 12580 2.404215 TGCGTGCTCTCTACAAAACTC 58.596 47.619 0.00 0.00 0.00 3.01
7857 12581 2.223947 TGCGTGCTCTCTACAAAACTCA 60.224 45.455 0.00 0.00 0.00 3.41
7858 12582 2.800544 GCGTGCTCTCTACAAAACTCAA 59.199 45.455 0.00 0.00 0.00 3.02
7859 12583 3.247648 GCGTGCTCTCTACAAAACTCAAA 59.752 43.478 0.00 0.00 0.00 2.69
7860 12584 4.083802 GCGTGCTCTCTACAAAACTCAAAT 60.084 41.667 0.00 0.00 0.00 2.32
7861 12585 5.120208 GCGTGCTCTCTACAAAACTCAAATA 59.880 40.000 0.00 0.00 0.00 1.40
7862 12586 6.670927 GCGTGCTCTCTACAAAACTCAAATAG 60.671 42.308 0.00 0.00 0.00 1.73
7863 12587 6.538444 GTGCTCTCTACAAAACTCAAATAGC 58.462 40.000 0.00 0.00 0.00 2.97
7864 12588 6.370166 GTGCTCTCTACAAAACTCAAATAGCT 59.630 38.462 0.00 0.00 0.00 3.32
7865 12589 6.936900 TGCTCTCTACAAAACTCAAATAGCTT 59.063 34.615 0.00 0.00 0.00 3.74
7866 12590 7.445402 TGCTCTCTACAAAACTCAAATAGCTTT 59.555 33.333 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
197 2814 1.642762 AGATTTGGAGGGCAGTGGATT 59.357 47.619 0.00 0.00 0.00 3.01
280 2897 1.191489 TCATCTTCCCGCCACTCACA 61.191 55.000 0.00 0.00 0.00 3.58
307 2924 1.727857 GCATCGCCTTTTAACCACGTG 60.728 52.381 9.08 9.08 0.00 4.49
366 2983 2.479049 GCGACTAAGTTATCGGTGCTCA 60.479 50.000 13.13 0.00 38.78 4.26
490 3117 7.933033 ACCATACCGTGTTTTAGTTAGAGAAAA 59.067 33.333 0.00 0.00 0.00 2.29
530 3158 5.104817 TGGAGCTGATTGATGATGTTCACTA 60.105 40.000 0.00 0.00 0.00 2.74
575 3203 5.656859 ACTGGTGTCTATGATACTACTTGCA 59.343 40.000 0.00 0.00 0.00 4.08
578 3206 6.321690 GTCCACTGGTGTCTATGATACTACTT 59.678 42.308 0.00 0.00 0.00 2.24
579 3207 5.828859 GTCCACTGGTGTCTATGATACTACT 59.171 44.000 0.00 0.00 0.00 2.57
580 3208 5.009811 GGTCCACTGGTGTCTATGATACTAC 59.990 48.000 0.00 0.00 0.00 2.73
992 3870 1.020861 GTCGATGTCCATGCTGCACA 61.021 55.000 3.57 0.00 0.00 4.57
1321 4199 1.299165 CCGTACGATCCAGGAAGCG 60.299 63.158 18.76 12.26 0.00 4.68
1351 4243 1.129998 CGACAAGCCAAAGCAGAGATG 59.870 52.381 0.00 0.00 43.56 2.90
1420 4312 5.972382 GGTGCTAACGACTAGAATAACAGAG 59.028 44.000 0.00 0.00 0.00 3.35
1421 4313 5.163581 GGGTGCTAACGACTAGAATAACAGA 60.164 44.000 0.00 0.00 0.00 3.41
1444 4336 6.939132 TCGTACAGAGAAGATAAGGTTAGG 57.061 41.667 0.00 0.00 0.00 2.69
1664 4563 4.872691 AGGCTTGTTCATTCAGACTAATCG 59.127 41.667 0.00 0.00 0.00 3.34
1665 4564 5.065731 CCAGGCTTGTTCATTCAGACTAATC 59.934 44.000 0.00 0.00 0.00 1.75
1673 4572 3.751767 AGCCAGGCTTGTTCATTCA 57.248 47.368 8.70 0.00 33.89 2.57
1705 4604 0.529119 GCATTACCCCCACGTAGTCG 60.529 60.000 0.00 0.00 41.61 4.18
1739 4638 7.614124 ACCAATATTTTCCAATCATTTGCAC 57.386 32.000 0.00 0.00 0.00 4.57
1828 4727 5.880054 AAATGACACCCTTTCTGTATTCG 57.120 39.130 0.00 0.00 0.00 3.34
1830 4729 9.088987 ACATAAAAATGACACCCTTTCTGTATT 57.911 29.630 0.00 0.00 0.00 1.89
1867 4766 6.294731 GCACAAGAAAATGACACCCTATCTTT 60.295 38.462 0.00 0.00 0.00 2.52
1872 4771 4.098914 AGCACAAGAAAATGACACCCTA 57.901 40.909 0.00 0.00 0.00 3.53
1937 4837 6.653320 ACCACTAATAAGAGACATCGCAAAAA 59.347 34.615 0.00 0.00 0.00 1.94
1944 4844 6.039047 TCGTACCACCACTAATAAGAGACATC 59.961 42.308 0.00 0.00 0.00 3.06
1945 4845 5.889853 TCGTACCACCACTAATAAGAGACAT 59.110 40.000 0.00 0.00 0.00 3.06
1946 4846 5.255687 TCGTACCACCACTAATAAGAGACA 58.744 41.667 0.00 0.00 0.00 3.41
1947 4847 5.824904 TCGTACCACCACTAATAAGAGAC 57.175 43.478 0.00 0.00 0.00 3.36
1948 4848 5.221185 GCATCGTACCACCACTAATAAGAGA 60.221 44.000 0.00 0.00 0.00 3.10
1949 4849 4.982916 GCATCGTACCACCACTAATAAGAG 59.017 45.833 0.00 0.00 0.00 2.85
1950 4850 4.202182 GGCATCGTACCACCACTAATAAGA 60.202 45.833 0.00 0.00 0.00 2.10
1951 4851 4.056050 GGCATCGTACCACCACTAATAAG 58.944 47.826 0.00 0.00 0.00 1.73
1952 4852 3.707611 AGGCATCGTACCACCACTAATAA 59.292 43.478 0.00 0.00 0.00 1.40
1957 4857 0.614979 AGAGGCATCGTACCACCACT 60.615 55.000 0.00 0.00 0.00 4.00
1994 4901 8.630091 TCATACCCCACCACTACTATATATCTT 58.370 37.037 0.00 0.00 0.00 2.40
2002 4909 2.658285 CGTCATACCCCACCACTACTA 58.342 52.381 0.00 0.00 0.00 1.82
2004 4911 0.179092 GCGTCATACCCCACCACTAC 60.179 60.000 0.00 0.00 0.00 2.73
2169 5079 4.743348 GCATTTCCTGAAACACCAACCAAT 60.743 41.667 0.00 0.00 32.51 3.16
2268 5178 5.157067 GTTTCTGAGAGCCATAAAGTTTGC 58.843 41.667 0.00 0.00 0.00 3.68
2454 5365 7.087639 CGAATTCCCTAGTTAGCAGAATAGAG 58.912 42.308 0.00 0.00 29.91 2.43
2500 5411 4.822036 CCATTTGTTGGTAAGACGTTCA 57.178 40.909 0.00 0.00 40.99 3.18
2630 5541 2.672996 CGCCCAAACCTGGACCAG 60.673 66.667 15.15 15.15 46.92 4.00
2770 5681 0.321122 GCTCCCCAGCATTATCTCCG 60.321 60.000 0.00 0.00 46.06 4.63
3066 5981 1.815003 CAATGTCCCCTGAAAGCTCAC 59.185 52.381 0.00 0.00 0.00 3.51
3256 6171 2.875317 TGCAAATCTGAGTACGCAACAA 59.125 40.909 0.00 0.00 0.00 2.83
3543 6458 1.425448 CCAGAAACTCCCTGTCCCTTT 59.575 52.381 0.00 0.00 0.00 3.11
3588 6503 9.956720 AACTGACTGATATCTTTTGAAAAACAG 57.043 29.630 3.98 0.00 0.00 3.16
3684 6599 5.657474 TCGCCAGTATAAGGACTTTGTAAG 58.343 41.667 0.00 0.00 0.00 2.34
4158 7073 6.924111 TCCAGAAAAATATTGCTGAAGAACC 58.076 36.000 12.35 0.00 43.96 3.62
4264 7179 7.896811 TCTTAGCAATCAGAAAGAGTAAGACA 58.103 34.615 0.00 0.00 0.00 3.41
4559 7476 8.490355 CAATTTTAGAATTCAACAGGAACAAGC 58.510 33.333 8.44 0.00 38.60 4.01
4710 7668 3.376234 TGACATGCTATGCTTCTTGCTTC 59.624 43.478 0.00 0.00 43.37 3.86
4711 7669 3.349927 TGACATGCTATGCTTCTTGCTT 58.650 40.909 0.00 0.00 43.37 3.91
4712 7670 2.995283 TGACATGCTATGCTTCTTGCT 58.005 42.857 0.00 0.00 43.37 3.91
4713 7671 3.984508 ATGACATGCTATGCTTCTTGC 57.015 42.857 0.00 0.00 43.25 4.01
4714 7672 6.967135 ACAATATGACATGCTATGCTTCTTG 58.033 36.000 0.00 0.00 0.00 3.02
4715 7673 6.769341 TGACAATATGACATGCTATGCTTCTT 59.231 34.615 0.00 0.00 0.00 2.52
4716 7674 6.293698 TGACAATATGACATGCTATGCTTCT 58.706 36.000 0.00 0.00 0.00 2.85
4797 7755 4.042809 TCCTTTCCCAAGTTCTGCTATTCA 59.957 41.667 0.00 0.00 0.00 2.57
4817 7775 4.916041 TCAACACTTCATCATCCTTCCT 57.084 40.909 0.00 0.00 0.00 3.36
4885 7843 3.135225 TGTACATGGTTCAAGTTCACCG 58.865 45.455 0.00 0.00 35.60 4.94
4959 7917 7.826252 ACTAATCTGTGAATAAGACAATGCACT 59.174 33.333 0.00 0.00 36.50 4.40
4960 7918 7.978982 ACTAATCTGTGAATAAGACAATGCAC 58.021 34.615 0.00 0.00 36.14 4.57
4981 7939 6.594159 GTGAGCTTGCCTACAAAATCTACTAA 59.406 38.462 0.00 0.00 34.74 2.24
5137 8095 4.093998 GTGCCTGTGTCTTAATCATGTCAG 59.906 45.833 0.00 0.00 0.00 3.51
5150 8108 9.542462 TTATTATTTATAGTCTGTGCCTGTGTC 57.458 33.333 0.00 0.00 0.00 3.67
5278 8443 3.481453 TGTGCCTTGCTACACAACATAA 58.519 40.909 0.00 0.00 43.48 1.90
5544 8710 0.253160 TAGGAGGTGGGCCATTGTCT 60.253 55.000 10.70 8.54 37.19 3.41
5586 8752 6.541641 AGATTCATTTAGCTAGGTTGCTTCTG 59.458 38.462 0.00 0.00 43.74 3.02
5601 8767 8.637986 GGTGGGCATATTAACAAGATTCATTTA 58.362 33.333 0.00 0.00 0.00 1.40
5682 8848 2.025981 TCATGCACAAGCCCAGACTTAT 60.026 45.455 0.00 0.00 41.13 1.73
5765 8931 8.450578 TCTTTTAGATTCAGAAGAAGCAAACA 57.549 30.769 0.00 0.00 42.47 2.83
6948 11653 5.926542 TCTAGCAACACAACTAGCTTAACAG 59.073 40.000 0.00 0.00 38.47 3.16
7025 11731 4.249661 TCTTGCAGCGTTACACATATTCA 58.750 39.130 0.00 0.00 0.00 2.57
7352 12075 3.161067 AGAAGTCTCTGTTAGCAGCTGA 58.839 45.455 20.43 0.00 42.29 4.26
7397 12121 4.782156 TGAGTGATGCAATACAAACAACG 58.218 39.130 0.00 0.00 0.00 4.10
7523 12247 6.986817 CGTATCACCAGATATGTTCTCCTTTT 59.013 38.462 0.00 0.00 38.88 2.27
7530 12254 4.258702 AGCCGTATCACCAGATATGTTC 57.741 45.455 0.00 0.00 40.58 3.18
7531 12255 4.021368 GGTAGCCGTATCACCAGATATGTT 60.021 45.833 0.00 0.00 40.58 2.71
7532 12256 3.510360 GGTAGCCGTATCACCAGATATGT 59.490 47.826 0.00 0.00 40.58 2.29
7533 12257 3.764434 AGGTAGCCGTATCACCAGATATG 59.236 47.826 0.00 0.00 41.43 1.78
7534 12258 4.048970 AGGTAGCCGTATCACCAGATAT 57.951 45.455 0.00 0.00 38.88 1.63
7535 12259 3.520691 AGGTAGCCGTATCACCAGATA 57.479 47.619 0.00 0.00 35.67 1.98
7536 12260 2.383442 AGGTAGCCGTATCACCAGAT 57.617 50.000 0.00 0.00 38.29 2.90
7537 12261 2.488528 CCTAGGTAGCCGTATCACCAGA 60.489 54.545 0.00 0.00 34.62 3.86
7538 12262 1.887198 CCTAGGTAGCCGTATCACCAG 59.113 57.143 0.00 0.00 34.62 4.00
7539 12263 1.216175 ACCTAGGTAGCCGTATCACCA 59.784 52.381 14.41 0.00 34.62 4.17
7540 12264 1.612463 CACCTAGGTAGCCGTATCACC 59.388 57.143 15.80 0.00 0.00 4.02
7541 12265 2.579873 TCACCTAGGTAGCCGTATCAC 58.420 52.381 15.80 0.00 0.00 3.06
7542 12266 3.520691 ATCACCTAGGTAGCCGTATCA 57.479 47.619 15.80 0.00 0.00 2.15
7543 12267 4.330250 TGTATCACCTAGGTAGCCGTATC 58.670 47.826 15.80 1.09 0.00 2.24
7544 12268 4.377762 TGTATCACCTAGGTAGCCGTAT 57.622 45.455 15.80 4.41 0.00 3.06
7545 12269 3.862877 TGTATCACCTAGGTAGCCGTA 57.137 47.619 15.80 0.61 0.00 4.02
7546 12270 2.742428 TGTATCACCTAGGTAGCCGT 57.258 50.000 15.80 1.60 0.00 5.68
7547 12271 3.861131 GCATTGTATCACCTAGGTAGCCG 60.861 52.174 15.80 1.81 0.00 5.52
7548 12272 3.325135 AGCATTGTATCACCTAGGTAGCC 59.675 47.826 15.80 3.62 0.00 3.93
7549 12273 4.561105 GAGCATTGTATCACCTAGGTAGC 58.439 47.826 15.80 8.61 0.00 3.58
7550 12274 4.588951 TGGAGCATTGTATCACCTAGGTAG 59.411 45.833 15.80 9.50 0.00 3.18
7551 12275 4.552674 TGGAGCATTGTATCACCTAGGTA 58.447 43.478 15.80 3.73 0.00 3.08
7552 12276 3.384168 TGGAGCATTGTATCACCTAGGT 58.616 45.455 9.21 9.21 0.00 3.08
7553 12277 3.389329 ACTGGAGCATTGTATCACCTAGG 59.611 47.826 7.41 7.41 0.00 3.02
7554 12278 4.141846 ACACTGGAGCATTGTATCACCTAG 60.142 45.833 0.00 0.00 0.00 3.02
7555 12279 3.774766 ACACTGGAGCATTGTATCACCTA 59.225 43.478 0.00 0.00 0.00 3.08
7556 12280 2.573462 ACACTGGAGCATTGTATCACCT 59.427 45.455 0.00 0.00 0.00 4.00
7557 12281 2.679837 CACACTGGAGCATTGTATCACC 59.320 50.000 0.00 0.00 0.00 4.02
7558 12282 3.338249 ACACACTGGAGCATTGTATCAC 58.662 45.455 0.00 0.00 0.00 3.06
7559 12283 3.701205 ACACACTGGAGCATTGTATCA 57.299 42.857 0.00 0.00 0.00 2.15
7560 12284 5.817296 TCATAACACACTGGAGCATTGTATC 59.183 40.000 0.00 0.00 0.00 2.24
7561 12285 5.744171 TCATAACACACTGGAGCATTGTAT 58.256 37.500 0.00 0.00 0.00 2.29
7562 12286 5.159273 TCATAACACACTGGAGCATTGTA 57.841 39.130 0.00 0.00 0.00 2.41
7563 12287 4.005650 CTCATAACACACTGGAGCATTGT 58.994 43.478 0.00 0.00 0.00 2.71
7564 12288 4.611310 CTCATAACACACTGGAGCATTG 57.389 45.455 0.00 0.00 0.00 2.82
7569 12293 1.066858 ACGGCTCATAACACACTGGAG 60.067 52.381 0.00 0.00 0.00 3.86
7570 12294 0.973632 ACGGCTCATAACACACTGGA 59.026 50.000 0.00 0.00 0.00 3.86
7571 12295 1.464608 CAACGGCTCATAACACACTGG 59.535 52.381 0.00 0.00 0.00 4.00
7572 12296 1.464608 CCAACGGCTCATAACACACTG 59.535 52.381 0.00 0.00 0.00 3.66
7573 12297 1.346395 TCCAACGGCTCATAACACACT 59.654 47.619 0.00 0.00 0.00 3.55
7574 12298 1.803334 TCCAACGGCTCATAACACAC 58.197 50.000 0.00 0.00 0.00 3.82
7575 12299 2.027653 TGATCCAACGGCTCATAACACA 60.028 45.455 0.00 0.00 0.00 3.72
7576 12300 2.627945 TGATCCAACGGCTCATAACAC 58.372 47.619 0.00 0.00 0.00 3.32
7577 12301 3.205338 CATGATCCAACGGCTCATAACA 58.795 45.455 0.00 0.00 36.56 2.41
7578 12302 2.031682 GCATGATCCAACGGCTCATAAC 60.032 50.000 0.00 0.00 36.56 1.89
7579 12303 2.158769 AGCATGATCCAACGGCTCATAA 60.159 45.455 0.00 0.00 36.56 1.90
7580 12304 1.417517 AGCATGATCCAACGGCTCATA 59.582 47.619 0.00 0.00 36.56 2.15
7581 12305 0.182061 AGCATGATCCAACGGCTCAT 59.818 50.000 0.00 0.00 38.85 2.90
7582 12306 1.603842 AGCATGATCCAACGGCTCA 59.396 52.632 0.00 0.00 32.21 4.26
7583 12307 2.315246 GAGCATGATCCAACGGCTC 58.685 57.895 0.00 0.00 43.41 4.70
7584 12308 0.035152 TTGAGCATGATCCAACGGCT 60.035 50.000 8.78 0.00 37.56 5.52
7585 12309 0.810648 TTTGAGCATGATCCAACGGC 59.189 50.000 8.78 0.00 0.00 5.68
7586 12310 1.402968 CCTTTGAGCATGATCCAACGG 59.597 52.381 8.78 6.42 0.00 4.44
7587 12311 1.402968 CCCTTTGAGCATGATCCAACG 59.597 52.381 8.78 0.00 0.00 4.10
7588 12312 2.424956 GTCCCTTTGAGCATGATCCAAC 59.575 50.000 8.78 0.00 0.00 3.77
7589 12313 2.041485 TGTCCCTTTGAGCATGATCCAA 59.959 45.455 8.78 2.60 0.00 3.53
7590 12314 1.634973 TGTCCCTTTGAGCATGATCCA 59.365 47.619 8.78 0.00 0.00 3.41
7591 12315 2.425143 TGTCCCTTTGAGCATGATCC 57.575 50.000 8.78 0.00 0.00 3.36
7592 12316 3.614092 TCTTGTCCCTTTGAGCATGATC 58.386 45.455 3.40 3.40 0.00 2.92
7593 12317 3.726557 TCTTGTCCCTTTGAGCATGAT 57.273 42.857 0.00 0.00 0.00 2.45
7594 12318 3.349927 CATCTTGTCCCTTTGAGCATGA 58.650 45.455 0.00 0.00 0.00 3.07
7595 12319 2.159282 GCATCTTGTCCCTTTGAGCATG 60.159 50.000 0.00 0.00 0.00 4.06
7596 12320 2.097825 GCATCTTGTCCCTTTGAGCAT 58.902 47.619 0.00 0.00 0.00 3.79
7597 12321 1.202915 TGCATCTTGTCCCTTTGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
7598 12322 1.538047 TGCATCTTGTCCCTTTGAGC 58.462 50.000 0.00 0.00 0.00 4.26
7599 12323 2.159282 GCATGCATCTTGTCCCTTTGAG 60.159 50.000 14.21 0.00 0.00 3.02
7600 12324 1.820519 GCATGCATCTTGTCCCTTTGA 59.179 47.619 14.21 0.00 0.00 2.69
7601 12325 1.546923 TGCATGCATCTTGTCCCTTTG 59.453 47.619 18.46 0.00 0.00 2.77
7602 12326 1.547372 GTGCATGCATCTTGTCCCTTT 59.453 47.619 25.64 0.00 0.00 3.11
7603 12327 1.180029 GTGCATGCATCTTGTCCCTT 58.820 50.000 25.64 0.00 0.00 3.95
7604 12328 0.038599 TGTGCATGCATCTTGTCCCT 59.961 50.000 25.64 0.00 0.00 4.20
7605 12329 0.171903 GTGTGCATGCATCTTGTCCC 59.828 55.000 25.64 8.75 0.00 4.46
7606 12330 0.179181 CGTGTGCATGCATCTTGTCC 60.179 55.000 25.64 9.55 0.00 4.02
7607 12331 0.518636 ACGTGTGCATGCATCTTGTC 59.481 50.000 25.64 10.35 0.00 3.18
7608 12332 0.239082 CACGTGTGCATGCATCTTGT 59.761 50.000 25.64 16.79 0.00 3.16
7609 12333 0.518195 TCACGTGTGCATGCATCTTG 59.482 50.000 25.64 21.31 0.00 3.02
7610 12334 0.518636 GTCACGTGTGCATGCATCTT 59.481 50.000 25.64 11.05 0.00 2.40
7611 12335 1.629345 CGTCACGTGTGCATGCATCT 61.629 55.000 25.64 3.51 0.00 2.90
7612 12336 1.225827 CGTCACGTGTGCATGCATC 60.226 57.895 25.64 18.35 0.00 3.91
7613 12337 2.679934 CCGTCACGTGTGCATGCAT 61.680 57.895 25.64 4.32 0.00 3.96
7614 12338 3.345011 CCGTCACGTGTGCATGCA 61.345 61.111 18.46 18.46 0.00 3.96
7615 12339 3.295228 GACCGTCACGTGTGCATGC 62.295 63.158 16.51 11.82 0.00 4.06
7616 12340 1.890008 CTGACCGTCACGTGTGCATG 61.890 60.000 16.51 1.43 0.00 4.06
7617 12341 1.664649 CTGACCGTCACGTGTGCAT 60.665 57.895 16.51 0.00 0.00 3.96
7618 12342 2.279186 CTGACCGTCACGTGTGCA 60.279 61.111 16.51 6.88 0.00 4.57
7619 12343 3.702555 GCTGACCGTCACGTGTGC 61.703 66.667 16.51 9.01 0.00 4.57
7620 12344 2.027605 AGCTGACCGTCACGTGTG 59.972 61.111 16.51 9.45 0.00 3.82
7621 12345 2.027605 CAGCTGACCGTCACGTGT 59.972 61.111 16.51 0.00 0.00 4.49
7622 12346 3.406361 GCAGCTGACCGTCACGTG 61.406 66.667 20.43 9.94 0.00 4.49
7623 12347 3.151958 AAGCAGCTGACCGTCACGT 62.152 57.895 20.43 0.00 0.00 4.49
7624 12348 2.356313 AAGCAGCTGACCGTCACG 60.356 61.111 20.43 0.00 0.00 4.35
7625 12349 1.300931 TGAAGCAGCTGACCGTCAC 60.301 57.895 20.43 0.00 0.00 3.67
7626 12350 1.300931 GTGAAGCAGCTGACCGTCA 60.301 57.895 20.43 11.79 0.00 4.35
7627 12351 2.029844 GGTGAAGCAGCTGACCGTC 61.030 63.158 20.43 9.09 0.00 4.79
7628 12352 2.031163 GGTGAAGCAGCTGACCGT 59.969 61.111 20.43 0.00 0.00 4.83
7629 12353 1.376424 ATGGTGAAGCAGCTGACCG 60.376 57.895 20.43 0.00 32.61 4.79
7630 12354 0.321919 TCATGGTGAAGCAGCTGACC 60.322 55.000 20.43 16.62 32.61 4.02
7631 12355 1.527034 TTCATGGTGAAGCAGCTGAC 58.473 50.000 20.43 9.11 31.83 3.51
7632 12356 2.275134 TTTCATGGTGAAGCAGCTGA 57.725 45.000 20.43 0.00 37.70 4.26
7633 12357 4.913335 ATATTTCATGGTGAAGCAGCTG 57.087 40.909 10.11 10.11 37.70 4.24
7634 12358 4.951715 TGAATATTTCATGGTGAAGCAGCT 59.048 37.500 0.00 0.00 37.70 4.24
7635 12359 5.252969 TGAATATTTCATGGTGAAGCAGC 57.747 39.130 0.00 0.00 37.70 5.25
7636 12360 8.537049 TTTTTGAATATTTCATGGTGAAGCAG 57.463 30.769 0.00 0.00 37.70 4.24
7658 12382 5.675684 AAGAATGTGTTCAGGGTGTTTTT 57.324 34.783 0.00 0.00 36.79 1.94
7659 12383 6.783708 TTAAGAATGTGTTCAGGGTGTTTT 57.216 33.333 0.00 0.00 36.79 2.43
7660 12384 6.976934 ATTAAGAATGTGTTCAGGGTGTTT 57.023 33.333 0.00 0.00 36.79 2.83
7661 12385 6.549364 TCAATTAAGAATGTGTTCAGGGTGTT 59.451 34.615 0.00 0.00 36.79 3.32
7662 12386 6.068010 TCAATTAAGAATGTGTTCAGGGTGT 58.932 36.000 0.00 0.00 36.79 4.16
7663 12387 6.349611 CCTCAATTAAGAATGTGTTCAGGGTG 60.350 42.308 0.00 0.00 36.79 4.61
7664 12388 5.711976 CCTCAATTAAGAATGTGTTCAGGGT 59.288 40.000 0.00 0.00 36.79 4.34
7665 12389 5.126061 CCCTCAATTAAGAATGTGTTCAGGG 59.874 44.000 0.00 0.00 36.79 4.45
7666 12390 5.393461 GCCCTCAATTAAGAATGTGTTCAGG 60.393 44.000 0.00 0.00 36.79 3.86
7667 12391 5.183713 TGCCCTCAATTAAGAATGTGTTCAG 59.816 40.000 0.00 0.00 36.79 3.02
7668 12392 5.076182 TGCCCTCAATTAAGAATGTGTTCA 58.924 37.500 0.00 0.00 36.79 3.18
7669 12393 5.643379 TGCCCTCAATTAAGAATGTGTTC 57.357 39.130 0.00 0.00 34.46 3.18
7670 12394 5.047092 CCTTGCCCTCAATTAAGAATGTGTT 60.047 40.000 0.00 0.00 0.00 3.32
7671 12395 4.463891 CCTTGCCCTCAATTAAGAATGTGT 59.536 41.667 0.00 0.00 0.00 3.72
7672 12396 4.678840 GCCTTGCCCTCAATTAAGAATGTG 60.679 45.833 0.00 0.00 0.00 3.21
7673 12397 3.448660 GCCTTGCCCTCAATTAAGAATGT 59.551 43.478 0.00 0.00 0.00 2.71
7674 12398 3.703052 AGCCTTGCCCTCAATTAAGAATG 59.297 43.478 0.00 0.00 0.00 2.67
7675 12399 3.703052 CAGCCTTGCCCTCAATTAAGAAT 59.297 43.478 0.00 0.00 0.00 2.40
7676 12400 3.091545 CAGCCTTGCCCTCAATTAAGAA 58.908 45.455 0.00 0.00 0.00 2.52
7677 12401 2.308570 TCAGCCTTGCCCTCAATTAAGA 59.691 45.455 0.00 0.00 0.00 2.10
7678 12402 2.726821 TCAGCCTTGCCCTCAATTAAG 58.273 47.619 0.00 0.00 0.00 1.85
7679 12403 2.897271 TCAGCCTTGCCCTCAATTAA 57.103 45.000 0.00 0.00 0.00 1.40
7680 12404 2.726821 CTTCAGCCTTGCCCTCAATTA 58.273 47.619 0.00 0.00 0.00 1.40
7681 12405 1.553706 CTTCAGCCTTGCCCTCAATT 58.446 50.000 0.00 0.00 0.00 2.32
7682 12406 0.969409 GCTTCAGCCTTGCCCTCAAT 60.969 55.000 0.00 0.00 34.31 2.57
7683 12407 1.604593 GCTTCAGCCTTGCCCTCAA 60.605 57.895 0.00 0.00 34.31 3.02
7684 12408 2.034687 GCTTCAGCCTTGCCCTCA 59.965 61.111 0.00 0.00 34.31 3.86
7685 12409 0.969409 ATTGCTTCAGCCTTGCCCTC 60.969 55.000 0.00 0.00 41.18 4.30
7686 12410 0.969409 GATTGCTTCAGCCTTGCCCT 60.969 55.000 0.00 0.00 41.18 5.19
7687 12411 1.252904 TGATTGCTTCAGCCTTGCCC 61.253 55.000 0.00 0.00 41.18 5.36
7688 12412 0.172803 CTGATTGCTTCAGCCTTGCC 59.827 55.000 4.62 0.00 45.16 4.52
7689 12413 3.715854 CTGATTGCTTCAGCCTTGC 57.284 52.632 4.62 0.00 45.16 4.01
7713 12437 8.671028 GCAAATCTGAGGAAATGCAAATAAATT 58.329 29.630 0.00 0.00 37.20 1.82
7714 12438 7.281549 GGCAAATCTGAGGAAATGCAAATAAAT 59.718 33.333 0.00 0.00 38.22 1.40
7715 12439 6.594937 GGCAAATCTGAGGAAATGCAAATAAA 59.405 34.615 0.00 0.00 38.22 1.40
7716 12440 6.108015 GGCAAATCTGAGGAAATGCAAATAA 58.892 36.000 0.00 0.00 38.22 1.40
7717 12441 5.395546 GGGCAAATCTGAGGAAATGCAAATA 60.396 40.000 0.00 0.00 38.22 1.40
7718 12442 4.510571 GGCAAATCTGAGGAAATGCAAAT 58.489 39.130 0.00 0.00 38.22 2.32
7719 12443 3.306919 GGGCAAATCTGAGGAAATGCAAA 60.307 43.478 0.00 0.00 38.22 3.68
7720 12444 2.234414 GGGCAAATCTGAGGAAATGCAA 59.766 45.455 0.00 0.00 38.22 4.08
7721 12445 1.826720 GGGCAAATCTGAGGAAATGCA 59.173 47.619 0.00 0.00 38.22 3.96
7722 12446 1.826720 TGGGCAAATCTGAGGAAATGC 59.173 47.619 0.00 0.00 36.80 3.56
7723 12447 4.748277 AATGGGCAAATCTGAGGAAATG 57.252 40.909 0.00 0.00 0.00 2.32
7724 12448 5.767277 AAAATGGGCAAATCTGAGGAAAT 57.233 34.783 0.00 0.00 0.00 2.17
7725 12449 5.565455 AAAAATGGGCAAATCTGAGGAAA 57.435 34.783 0.00 0.00 0.00 3.13
7726 12450 6.872585 ATAAAAATGGGCAAATCTGAGGAA 57.127 33.333 0.00 0.00 0.00 3.36
7727 12451 6.872585 AATAAAAATGGGCAAATCTGAGGA 57.127 33.333 0.00 0.00 0.00 3.71
7728 12452 7.225341 GCTAAATAAAAATGGGCAAATCTGAGG 59.775 37.037 0.00 0.00 0.00 3.86
7729 12453 7.765360 TGCTAAATAAAAATGGGCAAATCTGAG 59.235 33.333 0.00 0.00 0.00 3.35
7730 12454 7.619050 TGCTAAATAAAAATGGGCAAATCTGA 58.381 30.769 0.00 0.00 0.00 3.27
7731 12455 7.466320 GCTGCTAAATAAAAATGGGCAAATCTG 60.466 37.037 0.00 0.00 0.00 2.90
7732 12456 6.539826 GCTGCTAAATAAAAATGGGCAAATCT 59.460 34.615 0.00 0.00 0.00 2.40
7733 12457 6.315891 TGCTGCTAAATAAAAATGGGCAAATC 59.684 34.615 0.00 0.00 0.00 2.17
7734 12458 6.179040 TGCTGCTAAATAAAAATGGGCAAAT 58.821 32.000 0.00 0.00 0.00 2.32
7735 12459 5.555017 TGCTGCTAAATAAAAATGGGCAAA 58.445 33.333 0.00 0.00 0.00 3.68
7736 12460 5.157940 TGCTGCTAAATAAAAATGGGCAA 57.842 34.783 0.00 0.00 0.00 4.52
7737 12461 4.815533 TGCTGCTAAATAAAAATGGGCA 57.184 36.364 0.00 0.00 0.00 5.36
7738 12462 5.928264 CCTATGCTGCTAAATAAAAATGGGC 59.072 40.000 0.00 0.00 0.00 5.36
7739 12463 6.925165 CACCTATGCTGCTAAATAAAAATGGG 59.075 38.462 0.00 0.00 0.00 4.00
7740 12464 7.935338 CACCTATGCTGCTAAATAAAAATGG 57.065 36.000 0.00 0.00 0.00 3.16
7757 12481 8.994429 TTGTGGTTAATTAAAATGCACCTATG 57.006 30.769 0.00 0.00 0.00 2.23
7758 12482 9.030452 TCTTGTGGTTAATTAAAATGCACCTAT 57.970 29.630 0.00 0.00 0.00 2.57
7759 12483 8.410673 TCTTGTGGTTAATTAAAATGCACCTA 57.589 30.769 0.00 0.00 0.00 3.08
7760 12484 7.296628 TCTTGTGGTTAATTAAAATGCACCT 57.703 32.000 0.00 0.00 0.00 4.00
7761 12485 8.546597 AATCTTGTGGTTAATTAAAATGCACC 57.453 30.769 0.00 0.00 0.00 5.01
7762 12486 9.202273 TGAATCTTGTGGTTAATTAAAATGCAC 57.798 29.630 0.00 0.00 0.00 4.57
7763 12487 9.202273 GTGAATCTTGTGGTTAATTAAAATGCA 57.798 29.630 0.00 0.00 0.00 3.96
7764 12488 9.423061 AGTGAATCTTGTGGTTAATTAAAATGC 57.577 29.630 0.00 0.00 0.00 3.56
7769 12493 9.349713 ACTTGAGTGAATCTTGTGGTTAATTAA 57.650 29.630 0.00 0.00 0.00 1.40
7770 12494 8.918202 ACTTGAGTGAATCTTGTGGTTAATTA 57.082 30.769 0.00 0.00 0.00 1.40
7771 12495 7.823745 ACTTGAGTGAATCTTGTGGTTAATT 57.176 32.000 0.00 0.00 0.00 1.40
7772 12496 8.918202 TTACTTGAGTGAATCTTGTGGTTAAT 57.082 30.769 0.00 0.00 0.00 1.40
7773 12497 8.740123 TTTACTTGAGTGAATCTTGTGGTTAA 57.260 30.769 0.00 0.00 0.00 2.01
7774 12498 8.918202 ATTTACTTGAGTGAATCTTGTGGTTA 57.082 30.769 0.00 0.00 29.68 2.85
7775 12499 7.823745 ATTTACTTGAGTGAATCTTGTGGTT 57.176 32.000 0.00 0.00 29.68 3.67
7776 12500 7.823745 AATTTACTTGAGTGAATCTTGTGGT 57.176 32.000 2.18 0.00 33.82 4.16
7777 12501 7.115378 GCAAATTTACTTGAGTGAATCTTGTGG 59.885 37.037 15.77 0.52 33.82 4.17
7778 12502 7.864379 AGCAAATTTACTTGAGTGAATCTTGTG 59.136 33.333 15.77 9.13 33.82 3.33
7779 12503 7.945134 AGCAAATTTACTTGAGTGAATCTTGT 58.055 30.769 15.77 0.00 33.82 3.16
7780 12504 8.807667 AAGCAAATTTACTTGAGTGAATCTTG 57.192 30.769 2.76 9.08 33.82 3.02
7781 12505 8.084684 GGAAGCAAATTTACTTGAGTGAATCTT 58.915 33.333 8.41 2.48 33.82 2.40
7782 12506 7.449704 AGGAAGCAAATTTACTTGAGTGAATCT 59.550 33.333 8.41 0.00 33.82 2.40
7783 12507 7.597386 AGGAAGCAAATTTACTTGAGTGAATC 58.403 34.615 8.41 0.00 33.82 2.52
7784 12508 7.449704 AGAGGAAGCAAATTTACTTGAGTGAAT 59.550 33.333 8.41 0.00 36.04 2.57
7785 12509 6.772716 AGAGGAAGCAAATTTACTTGAGTGAA 59.227 34.615 8.41 0.00 0.00 3.18
7786 12510 6.299141 AGAGGAAGCAAATTTACTTGAGTGA 58.701 36.000 8.41 0.00 0.00 3.41
7787 12511 6.566197 AGAGGAAGCAAATTTACTTGAGTG 57.434 37.500 8.41 0.00 0.00 3.51
7788 12512 7.588497 AAAGAGGAAGCAAATTTACTTGAGT 57.412 32.000 8.41 0.00 0.00 3.41
7789 12513 9.617975 CTTAAAGAGGAAGCAAATTTACTTGAG 57.382 33.333 8.41 0.00 0.00 3.02
7790 12514 9.349713 TCTTAAAGAGGAAGCAAATTTACTTGA 57.650 29.630 8.41 0.00 0.00 3.02
7797 12521 9.591792 GCATTTATCTTAAAGAGGAAGCAAATT 57.408 29.630 0.00 0.00 0.00 1.82
7798 12522 8.200120 GGCATTTATCTTAAAGAGGAAGCAAAT 58.800 33.333 0.00 0.00 0.00 2.32
7799 12523 7.178274 TGGCATTTATCTTAAAGAGGAAGCAAA 59.822 33.333 0.00 0.00 0.00 3.68
7800 12524 6.663093 TGGCATTTATCTTAAAGAGGAAGCAA 59.337 34.615 0.00 0.00 0.00 3.91
7801 12525 6.186957 TGGCATTTATCTTAAAGAGGAAGCA 58.813 36.000 0.00 0.00 0.00 3.91
7802 12526 6.699575 TGGCATTTATCTTAAAGAGGAAGC 57.300 37.500 0.00 0.00 0.00 3.86
7803 12527 9.578439 CTTTTGGCATTTATCTTAAAGAGGAAG 57.422 33.333 0.00 0.00 0.00 3.46
7804 12528 9.088987 ACTTTTGGCATTTATCTTAAAGAGGAA 57.911 29.630 10.13 0.00 0.00 3.36
7805 12529 8.650143 ACTTTTGGCATTTATCTTAAAGAGGA 57.350 30.769 10.13 0.00 0.00 3.71
7806 12530 9.710900 AAACTTTTGGCATTTATCTTAAAGAGG 57.289 29.630 10.13 0.00 0.00 3.69
7812 12536 8.987890 GCAAAGAAACTTTTGGCATTTATCTTA 58.012 29.630 0.00 0.00 38.25 2.10
7813 12537 7.307337 CGCAAAGAAACTTTTGGCATTTATCTT 60.307 33.333 0.00 0.00 38.25 2.40
7814 12538 6.146021 CGCAAAGAAACTTTTGGCATTTATCT 59.854 34.615 0.00 0.00 38.25 1.98
7815 12539 6.073819 ACGCAAAGAAACTTTTGGCATTTATC 60.074 34.615 0.00 0.00 38.25 1.75
7816 12540 5.757808 ACGCAAAGAAACTTTTGGCATTTAT 59.242 32.000 0.00 0.00 38.25 1.40
7817 12541 5.006165 CACGCAAAGAAACTTTTGGCATTTA 59.994 36.000 0.00 0.00 38.25 1.40
7818 12542 3.938334 ACGCAAAGAAACTTTTGGCATTT 59.062 34.783 0.00 0.00 38.25 2.32
7819 12543 3.309410 CACGCAAAGAAACTTTTGGCATT 59.691 39.130 0.00 0.00 38.25 3.56
7820 12544 2.865551 CACGCAAAGAAACTTTTGGCAT 59.134 40.909 0.00 0.00 38.25 4.40
7821 12545 2.266554 CACGCAAAGAAACTTTTGGCA 58.733 42.857 0.00 0.00 38.25 4.92
7822 12546 1.005032 GCACGCAAAGAAACTTTTGGC 60.005 47.619 0.00 0.00 38.25 4.52
7823 12547 2.535574 GAGCACGCAAAGAAACTTTTGG 59.464 45.455 0.00 0.00 38.25 3.28
7824 12548 3.438360 AGAGCACGCAAAGAAACTTTTG 58.562 40.909 0.00 0.00 40.25 2.44
7825 12549 3.378427 AGAGAGCACGCAAAGAAACTTTT 59.622 39.130 0.00 0.00 0.00 2.27
7826 12550 2.945668 AGAGAGCACGCAAAGAAACTTT 59.054 40.909 0.00 0.00 0.00 2.66
7827 12551 2.565841 AGAGAGCACGCAAAGAAACTT 58.434 42.857 0.00 0.00 0.00 2.66
7828 12552 2.246719 AGAGAGCACGCAAAGAAACT 57.753 45.000 0.00 0.00 0.00 2.66
7829 12553 2.800544 TGTAGAGAGCACGCAAAGAAAC 59.199 45.455 0.00 0.00 0.00 2.78
7830 12554 3.106242 TGTAGAGAGCACGCAAAGAAA 57.894 42.857 0.00 0.00 0.00 2.52
7831 12555 2.812358 TGTAGAGAGCACGCAAAGAA 57.188 45.000 0.00 0.00 0.00 2.52
7832 12556 2.812358 TTGTAGAGAGCACGCAAAGA 57.188 45.000 0.00 0.00 0.00 2.52
7833 12557 3.248602 AGTTTTGTAGAGAGCACGCAAAG 59.751 43.478 0.00 0.00 31.87 2.77
7834 12558 3.202906 AGTTTTGTAGAGAGCACGCAAA 58.797 40.909 0.00 0.00 0.00 3.68
7835 12559 2.800544 GAGTTTTGTAGAGAGCACGCAA 59.199 45.455 0.00 0.00 0.00 4.85
7836 12560 2.223947 TGAGTTTTGTAGAGAGCACGCA 60.224 45.455 0.00 0.00 0.00 5.24
7837 12561 2.404215 TGAGTTTTGTAGAGAGCACGC 58.596 47.619 0.00 0.00 0.00 5.34
7838 12562 5.597813 ATTTGAGTTTTGTAGAGAGCACG 57.402 39.130 0.00 0.00 0.00 5.34
7839 12563 6.370166 AGCTATTTGAGTTTTGTAGAGAGCAC 59.630 38.462 0.00 0.00 0.00 4.40
7840 12564 6.467677 AGCTATTTGAGTTTTGTAGAGAGCA 58.532 36.000 0.00 0.00 0.00 4.26
7841 12565 6.976636 AGCTATTTGAGTTTTGTAGAGAGC 57.023 37.500 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.