Multiple sequence alignment - TraesCS3D01G166600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G166600 chr3D 100.000 2600 0 0 1 2600 140416840 140419439 0.000000e+00 4802.0
1 TraesCS3D01G166600 chr3B 95.238 1407 51 11 518 1914 202385616 202387016 0.000000e+00 2213.0
2 TraesCS3D01G166600 chr3B 88.998 409 26 7 1 390 202384884 202385292 3.010000e-134 488.0
3 TraesCS3D01G166600 chr3A 97.574 1113 22 4 810 1921 158170437 158171545 0.000000e+00 1901.0
4 TraesCS3D01G166600 chr3A 85.501 469 35 12 1 448 158169704 158170160 2.360000e-125 459.0
5 TraesCS3D01G166600 chr3A 84.912 285 29 9 482 758 158170148 158170426 2.550000e-70 276.0
6 TraesCS3D01G166600 chr2D 98.088 680 13 0 1921 2600 622232704 622233383 0.000000e+00 1184.0
7 TraesCS3D01G166600 chr2D 97.644 679 16 0 1922 2600 20652106 20651428 0.000000e+00 1166.0
8 TraesCS3D01G166600 chr2D 97.647 680 15 1 1921 2600 205592479 205593157 0.000000e+00 1166.0
9 TraesCS3D01G166600 chr5D 97.938 679 14 0 1922 2600 552732478 552733156 0.000000e+00 1177.0
10 TraesCS3D01G166600 chr7D 97.791 679 14 1 1922 2600 556705450 556706127 0.000000e+00 1170.0
11 TraesCS3D01G166600 chr7A 97.644 679 16 0 1922 2600 497683891 497684569 0.000000e+00 1166.0
12 TraesCS3D01G166600 chr4D 97.504 681 16 1 1920 2600 306790903 306791582 0.000000e+00 1162.0
13 TraesCS3D01G166600 chr4D 97.353 680 18 0 1921 2600 431414330 431415009 0.000000e+00 1157.0
14 TraesCS3D01G166600 chr1D 97.496 679 16 1 1922 2600 468556535 468557212 0.000000e+00 1158.0
15 TraesCS3D01G166600 chr2A 83.824 68 11 0 190 257 104025113 104025046 6.010000e-07 65.8
16 TraesCS3D01G166600 chr7B 79.268 82 16 1 327 407 604106839 604106758 3.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G166600 chr3D 140416840 140419439 2599 False 4802.000000 4802 100.000 1 2600 1 chr3D.!!$F1 2599
1 TraesCS3D01G166600 chr3B 202384884 202387016 2132 False 1350.500000 2213 92.118 1 1914 2 chr3B.!!$F1 1913
2 TraesCS3D01G166600 chr3A 158169704 158171545 1841 False 878.666667 1901 89.329 1 1921 3 chr3A.!!$F1 1920
3 TraesCS3D01G166600 chr2D 622232704 622233383 679 False 1184.000000 1184 98.088 1921 2600 1 chr2D.!!$F2 679
4 TraesCS3D01G166600 chr2D 20651428 20652106 678 True 1166.000000 1166 97.644 1922 2600 1 chr2D.!!$R1 678
5 TraesCS3D01G166600 chr2D 205592479 205593157 678 False 1166.000000 1166 97.647 1921 2600 1 chr2D.!!$F1 679
6 TraesCS3D01G166600 chr5D 552732478 552733156 678 False 1177.000000 1177 97.938 1922 2600 1 chr5D.!!$F1 678
7 TraesCS3D01G166600 chr7D 556705450 556706127 677 False 1170.000000 1170 97.791 1922 2600 1 chr7D.!!$F1 678
8 TraesCS3D01G166600 chr7A 497683891 497684569 678 False 1166.000000 1166 97.644 1922 2600 1 chr7A.!!$F1 678
9 TraesCS3D01G166600 chr4D 306790903 306791582 679 False 1162.000000 1162 97.504 1920 2600 1 chr4D.!!$F1 680
10 TraesCS3D01G166600 chr4D 431414330 431415009 679 False 1157.000000 1157 97.353 1921 2600 1 chr4D.!!$F2 679
11 TraesCS3D01G166600 chr1D 468556535 468557212 677 False 1158.000000 1158 97.496 1922 2600 1 chr1D.!!$F1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 469 0.039764 TTGCGGAAGAGAGAGGGAGA 59.96 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 2097 0.54995 CTGTGCCCAGATCCTCCAAT 59.45 55.0 0.0 0.0 41.5 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.689745 TACGCATTAGGGGAGCAGGT 60.690 55.000 0.00 0.00 0.00 4.00
76 77 1.669440 GTGAGGGTGGTTCTGCGTA 59.331 57.895 0.00 0.00 0.00 4.42
90 91 5.349270 GGTTCTGCGTACACATGTTGTATAA 59.651 40.000 0.00 0.00 42.82 0.98
244 252 1.949847 GCGGCTCTAGCTTGTCCTCA 61.950 60.000 0.00 0.00 41.70 3.86
262 282 2.361119 CTCAAGGATGTTGATGCCCATG 59.639 50.000 0.00 0.00 0.00 3.66
274 294 1.340088 TGCCCATGTGCATGAAGTTT 58.660 45.000 13.21 0.00 41.20 2.66
310 330 2.449464 TCAATGGTCTTGCAATCCTGG 58.551 47.619 17.64 9.80 0.00 4.45
354 375 4.446413 CCGTAGCCGCCGGTTCTT 62.446 66.667 4.45 0.00 40.59 2.52
357 378 1.571215 CGTAGCCGCCGGTTCTTTTT 61.571 55.000 4.45 0.00 0.00 1.94
358 379 0.167470 GTAGCCGCCGGTTCTTTTTC 59.833 55.000 4.45 0.00 0.00 2.29
359 380 0.250381 TAGCCGCCGGTTCTTTTTCA 60.250 50.000 4.45 0.00 0.00 2.69
393 415 1.670059 CCCTAGAGGAGGTTGGGTTT 58.330 55.000 0.00 0.00 45.03 3.27
399 421 2.160205 GAGGAGGTTGGGTTTAGTTGC 58.840 52.381 0.00 0.00 0.00 4.17
400 422 0.879090 GGAGGTTGGGTTTAGTTGCG 59.121 55.000 0.00 0.00 0.00 4.85
401 423 1.601166 GAGGTTGGGTTTAGTTGCGT 58.399 50.000 0.00 0.00 0.00 5.24
402 424 1.534163 GAGGTTGGGTTTAGTTGCGTC 59.466 52.381 0.00 0.00 0.00 5.19
403 425 0.594602 GGTTGGGTTTAGTTGCGTCC 59.405 55.000 0.00 0.00 0.00 4.79
404 426 1.310904 GTTGGGTTTAGTTGCGTCCA 58.689 50.000 0.00 0.00 0.00 4.02
405 427 1.883926 GTTGGGTTTAGTTGCGTCCAT 59.116 47.619 0.00 0.00 0.00 3.41
406 428 1.816074 TGGGTTTAGTTGCGTCCATC 58.184 50.000 0.00 0.00 0.00 3.51
407 429 0.725117 GGGTTTAGTTGCGTCCATCG 59.275 55.000 0.00 0.00 43.12 3.84
421 443 2.360350 ATCGCTGTGTGGGGCTTG 60.360 61.111 0.00 0.00 0.00 4.01
431 453 4.179579 GGGGCTTGCGTCGATTGC 62.180 66.667 0.00 5.73 0.00 3.56
439 461 1.516386 GCGTCGATTGCGGAAGAGA 60.516 57.895 0.00 0.00 38.28 3.10
440 462 1.475441 GCGTCGATTGCGGAAGAGAG 61.475 60.000 0.00 0.00 38.28 3.20
441 463 0.098905 CGTCGATTGCGGAAGAGAGA 59.901 55.000 0.00 0.00 38.28 3.10
442 464 1.833860 GTCGATTGCGGAAGAGAGAG 58.166 55.000 0.00 0.00 38.28 3.20
443 465 0.741326 TCGATTGCGGAAGAGAGAGG 59.259 55.000 0.00 0.00 38.28 3.69
444 466 0.249238 CGATTGCGGAAGAGAGAGGG 60.249 60.000 0.00 0.00 0.00 4.30
445 467 1.115467 GATTGCGGAAGAGAGAGGGA 58.885 55.000 0.00 0.00 0.00 4.20
446 468 1.068434 GATTGCGGAAGAGAGAGGGAG 59.932 57.143 0.00 0.00 0.00 4.30
447 469 0.039764 TTGCGGAAGAGAGAGGGAGA 59.960 55.000 0.00 0.00 0.00 3.71
448 470 0.395036 TGCGGAAGAGAGAGGGAGAG 60.395 60.000 0.00 0.00 0.00 3.20
449 471 0.106918 GCGGAAGAGAGAGGGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
450 472 1.967319 CGGAAGAGAGAGGGAGAGAG 58.033 60.000 0.00 0.00 0.00 3.20
451 473 1.488812 CGGAAGAGAGAGGGAGAGAGA 59.511 57.143 0.00 0.00 0.00 3.10
452 474 2.485479 CGGAAGAGAGAGGGAGAGAGAG 60.485 59.091 0.00 0.00 0.00 3.20
453 475 2.158608 GGAAGAGAGAGGGAGAGAGAGG 60.159 59.091 0.00 0.00 0.00 3.69
454 476 1.522900 AGAGAGAGGGAGAGAGAGGG 58.477 60.000 0.00 0.00 0.00 4.30
455 477 1.010793 AGAGAGAGGGAGAGAGAGGGA 59.989 57.143 0.00 0.00 0.00 4.20
456 478 1.421646 GAGAGAGGGAGAGAGAGGGAG 59.578 61.905 0.00 0.00 0.00 4.30
457 479 1.010793 AGAGAGGGAGAGAGAGGGAGA 59.989 57.143 0.00 0.00 0.00 3.71
458 480 1.421646 GAGAGGGAGAGAGAGGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
459 481 1.010793 AGAGGGAGAGAGAGGGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
460 482 1.421646 GAGGGAGAGAGAGGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
461 483 1.010793 AGGGAGAGAGAGGGAGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
462 484 1.421646 GGGAGAGAGAGGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
463 485 2.408565 GGAGAGAGAGGGAGAGAGAGA 58.591 57.143 0.00 0.00 0.00 3.10
464 486 2.370189 GGAGAGAGAGGGAGAGAGAGAG 59.630 59.091 0.00 0.00 0.00 3.20
465 487 3.309296 GAGAGAGAGGGAGAGAGAGAGA 58.691 54.545 0.00 0.00 0.00 3.10
466 488 3.711704 GAGAGAGAGGGAGAGAGAGAGAA 59.288 52.174 0.00 0.00 0.00 2.87
467 489 4.111577 AGAGAGAGGGAGAGAGAGAGAAA 58.888 47.826 0.00 0.00 0.00 2.52
468 490 4.164988 AGAGAGAGGGAGAGAGAGAGAAAG 59.835 50.000 0.00 0.00 0.00 2.62
469 491 4.111577 AGAGAGGGAGAGAGAGAGAAAGA 58.888 47.826 0.00 0.00 0.00 2.52
470 492 4.164988 AGAGAGGGAGAGAGAGAGAAAGAG 59.835 50.000 0.00 0.00 0.00 2.85
471 493 4.111577 AGAGGGAGAGAGAGAGAAAGAGA 58.888 47.826 0.00 0.00 0.00 3.10
472 494 4.728860 AGAGGGAGAGAGAGAGAAAGAGAT 59.271 45.833 0.00 0.00 0.00 2.75
473 495 5.911178 AGAGGGAGAGAGAGAGAAAGAGATA 59.089 44.000 0.00 0.00 0.00 1.98
474 496 6.043706 AGAGGGAGAGAGAGAGAAAGAGATAG 59.956 46.154 0.00 0.00 0.00 2.08
475 497 5.911178 AGGGAGAGAGAGAGAAAGAGATAGA 59.089 44.000 0.00 0.00 0.00 1.98
476 498 6.564152 AGGGAGAGAGAGAGAAAGAGATAGAT 59.436 42.308 0.00 0.00 0.00 1.98
477 499 7.739444 AGGGAGAGAGAGAGAAAGAGATAGATA 59.261 40.741 0.00 0.00 0.00 1.98
478 500 8.043710 GGGAGAGAGAGAGAAAGAGATAGATAG 58.956 44.444 0.00 0.00 0.00 2.08
479 501 8.816894 GGAGAGAGAGAGAAAGAGATAGATAGA 58.183 40.741 0.00 0.00 0.00 1.98
480 502 9.868277 GAGAGAGAGAGAAAGAGATAGATAGAG 57.132 40.741 0.00 0.00 0.00 2.43
481 503 9.607333 AGAGAGAGAGAAAGAGATAGATAGAGA 57.393 37.037 0.00 0.00 0.00 3.10
482 504 9.868277 GAGAGAGAGAAAGAGATAGATAGAGAG 57.132 40.741 0.00 0.00 0.00 3.20
483 505 9.607333 AGAGAGAGAAAGAGATAGATAGAGAGA 57.393 37.037 0.00 0.00 0.00 3.10
503 525 2.350863 AAGAGAGAGATGGTTGGGGT 57.649 50.000 0.00 0.00 0.00 4.95
504 526 1.577736 AGAGAGAGATGGTTGGGGTG 58.422 55.000 0.00 0.00 0.00 4.61
507 529 1.151587 AGAGATGGTTGGGGTGGGT 60.152 57.895 0.00 0.00 0.00 4.51
508 530 1.000896 GAGATGGTTGGGGTGGGTG 60.001 63.158 0.00 0.00 0.00 4.61
509 531 1.778383 AGATGGTTGGGGTGGGTGT 60.778 57.895 0.00 0.00 0.00 4.16
537 755 4.132336 GACCGGATTATGTTTAGGGGTTC 58.868 47.826 9.46 0.00 0.00 3.62
547 765 6.893020 ATGTTTAGGGGTTCTGTCTCTAAT 57.107 37.500 0.00 0.00 0.00 1.73
656 875 0.179073 TCTTGCCGCAGATCTTAGCC 60.179 55.000 0.00 0.00 0.00 3.93
663 882 3.368427 GCCGCAGATCTTAGCCACATATA 60.368 47.826 0.00 0.00 0.00 0.86
664 883 4.681781 GCCGCAGATCTTAGCCACATATAT 60.682 45.833 0.00 0.00 0.00 0.86
678 897 5.562696 GCCACATATATGGTCAATCAAACGG 60.563 44.000 16.96 1.78 42.28 4.44
682 907 8.616942 CACATATATGGTCAATCAAACGGTAAA 58.383 33.333 16.96 0.00 0.00 2.01
724 949 3.842820 CACGAGAGAGCAGAGAAATCAA 58.157 45.455 0.00 0.00 0.00 2.57
727 952 6.038985 CACGAGAGAGCAGAGAAATCAAATA 58.961 40.000 0.00 0.00 0.00 1.40
732 957 8.665643 AGAGAGCAGAGAAATCAAATAATGAG 57.334 34.615 0.00 0.00 42.53 2.90
772 1003 2.242047 TAGATGAGACCCGAGAGACG 57.758 55.000 0.00 0.00 42.18 4.18
776 1007 0.108089 TGAGACCCGAGAGACGAGAG 60.108 60.000 0.00 0.00 45.77 3.20
782 1013 1.092921 CCGAGAGACGAGAGGGTGAG 61.093 65.000 0.00 0.00 45.77 3.51
793 1024 1.726533 GAGGGTGAGGACGTCCGATC 61.727 65.000 28.26 21.26 42.08 3.69
795 1026 2.408022 GTGAGGACGTCCGATCCG 59.592 66.667 28.26 0.00 41.52 4.18
802 1033 0.729116 GACGTCCGATCCGTAGACAA 59.271 55.000 3.51 0.00 38.92 3.18
831 1062 7.981225 CCAAAAACACCATTTTAGATATCCAGG 59.019 37.037 0.00 0.00 31.54 4.45
832 1063 8.531146 CAAAAACACCATTTTAGATATCCAGGT 58.469 33.333 0.00 0.00 31.54 4.00
975 1207 4.821805 GCGAATCCAAATCCCTGAGAAATA 59.178 41.667 0.00 0.00 0.00 1.40
1606 1838 3.561143 TGCATTGGCCGGTAAATAGATT 58.439 40.909 1.90 0.00 40.13 2.40
1708 1940 2.228822 GCCATGGTTAGAAACACAGTGG 59.771 50.000 14.67 0.00 0.00 4.00
1790 2022 5.454045 GGCCTGAATCTCTTCTACTAAAGGG 60.454 48.000 0.00 0.00 32.29 3.95
1809 2041 0.947244 GAGAGGCCAAGTGTGTGTTG 59.053 55.000 5.01 0.00 0.00 3.33
1865 2097 3.693578 TCATGAAGTTTGTGTCAGTTGCA 59.306 39.130 0.00 0.00 0.00 4.08
1896 2128 5.023533 TCTGGGCACAGTTACAGATATTC 57.976 43.478 17.28 0.00 45.14 1.75
1954 2186 2.043941 AGGAATACCCCCGGCCTT 59.956 61.111 0.00 0.00 36.73 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.446099 GCGACGGTGAGCTGATTCA 60.446 57.895 0.00 0.00 0.00 2.57
124 126 1.911357 TGATCTGGTGCTGATCTTGGT 59.089 47.619 0.00 0.00 38.85 3.67
214 222 0.246635 TAGAGCCGCACTTGAACTCC 59.753 55.000 0.00 0.00 0.00 3.85
244 252 2.104967 CACATGGGCATCAACATCCTT 58.895 47.619 0.00 0.00 0.00 3.36
262 282 2.602217 GGACGTGTGAAACTTCATGCAC 60.602 50.000 0.00 0.06 39.73 4.57
274 294 1.627864 TTGATCTGGAGGACGTGTGA 58.372 50.000 0.00 0.00 0.00 3.58
354 375 0.465705 TTTGTGGCCGCCAATGAAAA 59.534 45.000 15.39 9.89 34.18 2.29
357 378 2.569354 GGTTTGTGGCCGCCAATGA 61.569 57.895 15.39 0.00 34.18 2.57
358 379 2.048316 GGTTTGTGGCCGCCAATG 60.048 61.111 15.39 0.00 34.18 2.82
359 380 2.433646 TAGGGTTTGTGGCCGCCAAT 62.434 55.000 15.39 0.00 34.18 3.16
399 421 2.815211 CCCACACAGCGATGGACG 60.815 66.667 5.32 0.00 45.66 4.79
400 422 2.436646 CCCCACACAGCGATGGAC 60.437 66.667 5.32 0.00 38.34 4.02
401 423 4.408821 GCCCCACACAGCGATGGA 62.409 66.667 5.32 0.00 38.34 3.41
402 424 3.925630 AAGCCCCACACAGCGATGG 62.926 63.158 5.32 0.00 35.59 3.51
403 425 2.360350 AAGCCCCACACAGCGATG 60.360 61.111 0.00 0.00 0.00 3.84
404 426 2.360350 CAAGCCCCACACAGCGAT 60.360 61.111 0.00 0.00 0.00 4.58
421 443 1.475441 CTCTCTTCCGCAATCGACGC 61.475 60.000 0.00 0.00 38.10 5.19
431 453 1.488812 TCTCTCTCCCTCTCTCTTCCG 59.511 57.143 0.00 0.00 0.00 4.30
439 461 1.010793 TCTCTCCCTCTCTCTCCCTCT 59.989 57.143 0.00 0.00 0.00 3.69
440 462 1.421646 CTCTCTCCCTCTCTCTCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
441 463 1.010793 TCTCTCTCCCTCTCTCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
442 464 1.421646 CTCTCTCTCCCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
443 465 2.370189 CTCTCTCTCTCCCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
444 466 3.309296 TCTCTCTCTCTCCCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
445 467 3.421394 TCTCTCTCTCTCCCTCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
446 468 4.164221 TCTTTCTCTCTCTCTCCCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
447 469 4.111577 TCTTTCTCTCTCTCTCCCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
448 470 4.164221 TCTCTTTCTCTCTCTCTCCCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
449 471 4.111577 TCTCTTTCTCTCTCTCTCCCTCT 58.888 47.826 0.00 0.00 0.00 3.69
450 472 4.503714 TCTCTTTCTCTCTCTCTCCCTC 57.496 50.000 0.00 0.00 0.00 4.30
451 473 5.911178 TCTATCTCTTTCTCTCTCTCTCCCT 59.089 44.000 0.00 0.00 0.00 4.20
452 474 6.187727 TCTATCTCTTTCTCTCTCTCTCCC 57.812 45.833 0.00 0.00 0.00 4.30
453 475 8.816894 TCTATCTATCTCTTTCTCTCTCTCTCC 58.183 40.741 0.00 0.00 0.00 3.71
454 476 9.868277 CTCTATCTATCTCTTTCTCTCTCTCTC 57.132 40.741 0.00 0.00 0.00 3.20
455 477 9.607333 TCTCTATCTATCTCTTTCTCTCTCTCT 57.393 37.037 0.00 0.00 0.00 3.10
456 478 9.868277 CTCTCTATCTATCTCTTTCTCTCTCTC 57.132 40.741 0.00 0.00 0.00 3.20
457 479 9.607333 TCTCTCTATCTATCTCTTTCTCTCTCT 57.393 37.037 0.00 0.00 0.00 3.10
467 489 9.607333 TCTCTCTCTTTCTCTCTATCTATCTCT 57.393 37.037 0.00 0.00 0.00 3.10
470 492 9.388506 CCATCTCTCTCTTTCTCTCTATCTATC 57.611 40.741 0.00 0.00 0.00 2.08
471 493 8.894592 ACCATCTCTCTCTTTCTCTCTATCTAT 58.105 37.037 0.00 0.00 0.00 1.98
472 494 8.275187 ACCATCTCTCTCTTTCTCTCTATCTA 57.725 38.462 0.00 0.00 0.00 1.98
473 495 7.154191 ACCATCTCTCTCTTTCTCTCTATCT 57.846 40.000 0.00 0.00 0.00 1.98
474 496 7.255590 CCAACCATCTCTCTCTTTCTCTCTATC 60.256 44.444 0.00 0.00 0.00 2.08
475 497 6.550854 CCAACCATCTCTCTCTTTCTCTCTAT 59.449 42.308 0.00 0.00 0.00 1.98
476 498 5.890985 CCAACCATCTCTCTCTTTCTCTCTA 59.109 44.000 0.00 0.00 0.00 2.43
477 499 4.711355 CCAACCATCTCTCTCTTTCTCTCT 59.289 45.833 0.00 0.00 0.00 3.10
478 500 4.141959 CCCAACCATCTCTCTCTTTCTCTC 60.142 50.000 0.00 0.00 0.00 3.20
479 501 3.774216 CCCAACCATCTCTCTCTTTCTCT 59.226 47.826 0.00 0.00 0.00 3.10
480 502 3.118445 CCCCAACCATCTCTCTCTTTCTC 60.118 52.174 0.00 0.00 0.00 2.87
481 503 2.843113 CCCCAACCATCTCTCTCTTTCT 59.157 50.000 0.00 0.00 0.00 2.52
482 504 2.573915 ACCCCAACCATCTCTCTCTTTC 59.426 50.000 0.00 0.00 0.00 2.62
483 505 2.307098 CACCCCAACCATCTCTCTCTTT 59.693 50.000 0.00 0.00 0.00 2.52
484 506 1.912043 CACCCCAACCATCTCTCTCTT 59.088 52.381 0.00 0.00 0.00 2.85
514 536 3.116959 ACCCCTAAACATAATCCGGTCA 58.883 45.455 0.00 0.00 0.00 4.02
515 537 3.851458 ACCCCTAAACATAATCCGGTC 57.149 47.619 0.00 0.00 0.00 4.79
527 745 6.697641 AACATTAGAGACAGAACCCCTAAA 57.302 37.500 0.00 0.00 0.00 1.85
537 755 6.459066 TCTCCAACTGAAACATTAGAGACAG 58.541 40.000 0.00 0.00 0.00 3.51
547 765 4.438200 GCGAACTTTTCTCCAACTGAAACA 60.438 41.667 0.00 0.00 33.77 2.83
656 875 6.618287 ACCGTTTGATTGACCATATATGTG 57.382 37.500 11.73 5.92 0.00 3.21
772 1003 2.408241 CGGACGTCCTCACCCTCTC 61.408 68.421 30.92 2.03 0.00 3.20
776 1007 2.783288 GGATCGGACGTCCTCACCC 61.783 68.421 30.92 21.30 32.85 4.61
782 1013 1.091771 TGTCTACGGATCGGACGTCC 61.092 60.000 25.28 25.28 44.37 4.79
793 1024 4.036971 TGGTGTTTTTGGATTTGTCTACGG 59.963 41.667 0.00 0.00 0.00 4.02
795 1026 8.432110 AAAATGGTGTTTTTGGATTTGTCTAC 57.568 30.769 0.00 0.00 0.00 2.59
1708 1940 7.381139 CACAACCATTATTTGTTCACACTAACC 59.619 37.037 0.00 0.00 34.91 2.85
1790 2022 0.947244 CAACACACACTTGGCCTCTC 59.053 55.000 3.32 0.00 0.00 3.20
1809 2041 3.316573 CTCCCACCCTCAACGGCTC 62.317 68.421 0.00 0.00 0.00 4.70
1865 2097 0.549950 CTGTGCCCAGATCCTCCAAT 59.450 55.000 0.00 0.00 41.50 3.16
1896 2128 3.189618 TCATACTTGCAGGCATCTCAG 57.810 47.619 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.