Multiple sequence alignment - TraesCS3D01G166500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G166500 chr3D 100.000 3212 0 0 1 3212 138894639 138897850 0.000000e+00 5932.0
1 TraesCS3D01G166500 chr3D 90.578 329 27 3 119 444 134007404 134007731 1.770000e-117 433.0
2 TraesCS3D01G166500 chr3D 89.851 335 30 3 119 450 463681837 463681504 8.230000e-116 427.0
3 TraesCS3D01G166500 chr3A 93.179 2639 121 26 1 2608 157030966 157033576 0.000000e+00 3821.0
4 TraesCS3D01G166500 chr3A 93.654 457 28 1 2757 3212 7574552 7574096 0.000000e+00 682.0
5 TraesCS3D01G166500 chr3A 92.308 481 34 3 2734 3212 991802 991323 0.000000e+00 680.0
6 TraesCS3D01G166500 chr3A 91.892 37 3 0 1172 1208 10253405 10253441 6.000000e-03 52.8
7 TraesCS3D01G166500 chr3A 100.000 28 0 0 1171 1198 614439320 614439293 6.000000e-03 52.8
8 TraesCS3D01G166500 chr3B 97.004 1936 42 5 624 2549 201887666 201889595 0.000000e+00 3240.0
9 TraesCS3D01G166500 chr3B 88.506 87 8 1 2529 2615 201894662 201894746 1.580000e-18 104.0
10 TraesCS3D01G166500 chr2D 92.961 483 31 3 2732 3212 155469824 155469343 0.000000e+00 701.0
11 TraesCS3D01G166500 chr2D 92.516 481 32 4 2734 3212 619051741 619051263 0.000000e+00 686.0
12 TraesCS3D01G166500 chr2D 90.774 336 27 3 119 451 620551877 620552211 2.270000e-121 446.0
13 TraesCS3D01G166500 chr2D 90.179 336 27 5 119 450 632084262 632083929 1.770000e-117 433.0
14 TraesCS3D01G166500 chr2D 85.149 101 12 2 3 103 405280716 405280619 2.040000e-17 100.0
15 TraesCS3D01G166500 chr4D 92.355 484 34 3 2731 3212 52760864 52760382 0.000000e+00 686.0
16 TraesCS3D01G166500 chr4D 89.851 335 30 3 119 450 504283616 504283283 8.230000e-116 427.0
17 TraesCS3D01G166500 chr5D 92.308 481 33 4 2734 3212 392071128 392070650 0.000000e+00 680.0
18 TraesCS3D01G166500 chr5D 89.091 110 11 1 1 110 396876867 396876975 5.590000e-28 135.0
19 TraesCS3D01G166500 chr5D 87.755 98 12 0 3 100 40676446 40676543 7.280000e-22 115.0
20 TraesCS3D01G166500 chr6D 92.100 481 34 4 2734 3212 20341210 20340732 0.000000e+00 675.0
21 TraesCS3D01G166500 chr6D 91.268 481 39 3 2734 3212 470029161 470028682 0.000000e+00 652.0
22 TraesCS3D01G166500 chrUn 91.561 474 35 5 2733 3204 82036848 82037318 0.000000e+00 649.0
23 TraesCS3D01G166500 chr6B 90.964 332 26 3 119 447 84603156 84603486 8.180000e-121 444.0
24 TraesCS3D01G166500 chr4B 89.881 336 30 3 119 451 592204572 592204238 2.290000e-116 429.0
25 TraesCS3D01G166500 chr2B 88.986 345 32 4 119 460 776322218 776321877 3.830000e-114 422.0
26 TraesCS3D01G166500 chr2B 84.158 101 15 1 3 102 51677890 51677990 2.640000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G166500 chr3D 138894639 138897850 3211 False 5932 5932 100.000 1 3212 1 chr3D.!!$F2 3211
1 TraesCS3D01G166500 chr3A 157030966 157033576 2610 False 3821 3821 93.179 1 2608 1 chr3A.!!$F2 2607
2 TraesCS3D01G166500 chr3B 201887666 201889595 1929 False 3240 3240 97.004 624 2549 1 chr3B.!!$F1 1925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 413 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.0 0.0 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2359 2384 0.378962 CCTTTTCGGTTCAACACGCA 59.621 50.0 0.0 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 2.116125 GAGGCACAAACCCTGGCT 59.884 61.111 0.00 0.00 46.63 4.75
106 107 2.764637 TTTTTGGAGGAGGAGGCCGC 62.765 60.000 0.00 0.00 0.00 6.53
107 108 4.722535 TTGGAGGAGGAGGCCGCT 62.723 66.667 6.40 0.00 0.00 5.52
115 116 4.175337 GGAGGCCGCTGCATGGTA 62.175 66.667 6.40 0.00 40.13 3.25
116 117 2.897350 GAGGCCGCTGCATGGTAC 60.897 66.667 0.00 1.50 40.13 3.34
144 148 1.459592 CGGATCTGGTTGTTGTTCGTC 59.540 52.381 0.00 0.00 0.00 4.20
153 157 3.466836 GTTGTTGTTCGTCTATGTTCGC 58.533 45.455 0.00 0.00 0.00 4.70
155 159 1.717645 GTTGTTCGTCTATGTTCGCGT 59.282 47.619 5.77 0.00 0.00 6.01
161 166 1.546834 GTCTATGTTCGCGTGTCTCC 58.453 55.000 5.77 0.00 0.00 3.71
165 170 2.355481 GTTCGCGTGTCTCCGGTT 60.355 61.111 5.77 0.00 0.00 4.44
174 179 0.902531 TGTCTCCGGTTGGATCCTTC 59.097 55.000 14.23 5.77 45.33 3.46
232 239 0.689745 TGGCGCTAGTTCTATGGGGT 60.690 55.000 7.64 0.00 0.00 4.95
243 250 2.958818 TCTATGGGGTCTTAGCACGAT 58.041 47.619 0.00 0.00 0.00 3.73
244 251 2.628178 TCTATGGGGTCTTAGCACGATG 59.372 50.000 0.00 0.00 0.00 3.84
249 256 2.354805 GGGGTCTTAGCACGATGACTTT 60.355 50.000 0.00 0.00 0.00 2.66
251 258 3.368531 GGGTCTTAGCACGATGACTTTCT 60.369 47.826 0.00 0.00 0.00 2.52
282 289 2.102554 CAACAAGTTGTGCCCGACA 58.897 52.632 9.79 0.00 35.92 4.35
283 290 0.667993 CAACAAGTTGTGCCCGACAT 59.332 50.000 9.79 0.00 35.92 3.06
286 293 0.948623 CAAGTTGTGCCCGACATCGA 60.949 55.000 2.09 0.00 43.02 3.59
297 304 1.453379 GACATCGACGAGGGAGGGA 60.453 63.158 14.64 0.00 0.00 4.20
339 346 1.068954 GGCTTGCTTCAGTGCTTGTAC 60.069 52.381 0.00 0.00 0.00 2.90
355 362 1.542915 TGTACTCGTTGCTAGGTGGTC 59.457 52.381 0.00 0.00 0.00 4.02
373 380 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
404 411 3.408288 TTTTGGTGTTCGTTGTACTGC 57.592 42.857 0.00 0.00 0.00 4.40
406 413 0.178301 TGGTGTTCGTTGTACTGCCA 59.822 50.000 0.00 0.00 0.00 4.92
422 429 5.769484 ACTGCCATGATTGAAGATGAATC 57.231 39.130 0.00 0.00 0.00 2.52
428 435 5.163884 CCATGATTGAAGATGAATCGATCGG 60.164 44.000 16.41 0.00 39.56 4.18
443 450 2.156891 CGATCGGAAGTTTTCTCGCAAA 59.843 45.455 7.38 0.00 0.00 3.68
444 451 3.363575 CGATCGGAAGTTTTCTCGCAAAA 60.364 43.478 7.38 0.00 0.00 2.44
445 452 4.533222 GATCGGAAGTTTTCTCGCAAAAA 58.467 39.130 0.00 0.00 0.00 1.94
517 524 7.385752 CACATCAATTCAGCTGGTTAAAAATGT 59.614 33.333 15.13 12.01 0.00 2.71
526 533 7.175816 TCAGCTGGTTAAAAATGTAGTTGCATA 59.824 33.333 15.13 0.00 0.00 3.14
527 534 7.812191 CAGCTGGTTAAAAATGTAGTTGCATAA 59.188 33.333 5.57 0.00 0.00 1.90
528 535 7.812669 AGCTGGTTAAAAATGTAGTTGCATAAC 59.187 33.333 0.00 0.00 37.06 1.89
529 536 7.596995 GCTGGTTAAAAATGTAGTTGCATAACA 59.403 33.333 0.00 0.00 39.30 2.41
530 537 9.469807 CTGGTTAAAAATGTAGTTGCATAACAA 57.530 29.630 0.00 0.00 39.30 2.83
531 538 9.817809 TGGTTAAAAATGTAGTTGCATAACAAA 57.182 25.926 0.00 0.00 40.82 2.83
565 572 5.843019 TGCCCCATAAAATAAAAACCCAA 57.157 34.783 0.00 0.00 0.00 4.12
604 611 2.831526 ACCATGTGGATTTTGGTTAGGC 59.168 45.455 5.96 0.00 40.87 3.93
613 620 4.939439 GGATTTTGGTTAGGCGAGAAGTAA 59.061 41.667 0.00 0.00 0.00 2.24
614 621 5.163784 GGATTTTGGTTAGGCGAGAAGTAAC 60.164 44.000 0.00 0.00 0.00 2.50
615 622 3.323751 TTGGTTAGGCGAGAAGTAACC 57.676 47.619 3.94 3.94 44.12 2.85
616 623 2.532843 TGGTTAGGCGAGAAGTAACCT 58.467 47.619 10.89 0.00 44.16 3.50
617 624 2.232941 TGGTTAGGCGAGAAGTAACCTG 59.767 50.000 10.89 0.00 44.16 4.00
619 626 3.445096 GGTTAGGCGAGAAGTAACCTGTA 59.555 47.826 3.70 0.00 41.69 2.74
620 627 4.099113 GGTTAGGCGAGAAGTAACCTGTAT 59.901 45.833 3.70 0.00 41.69 2.29
622 629 4.124851 AGGCGAGAAGTAACCTGTATTG 57.875 45.455 0.00 0.00 0.00 1.90
632 639 9.911788 AGAAGTAACCTGTATTGATCATCAATT 57.088 29.630 18.11 2.73 44.03 2.32
662 669 2.550487 CCGAATTTTCCAGTCGGCA 58.450 52.632 0.00 0.00 46.91 5.69
745 759 2.287009 GCCACTGGTTTTTCGAAGACAG 60.287 50.000 13.53 14.15 34.32 3.51
1152 1171 4.838486 GGCGACGTCGAGGCAGAG 62.838 72.222 39.74 10.32 43.02 3.35
1392 1417 8.286191 AGAAGAAAAAGAAGAAGAAGAAGCAA 57.714 30.769 0.00 0.00 0.00 3.91
1749 1774 3.043713 TACACGACGACGCTCCGT 61.044 61.111 7.30 0.00 46.43 4.69
2316 2341 7.840342 AATCAAAGCATGTTCTCTGTAGTAG 57.160 36.000 0.00 0.00 0.00 2.57
2317 2342 6.346477 TCAAAGCATGTTCTCTGTAGTAGT 57.654 37.500 0.00 0.00 0.00 2.73
2318 2343 7.462571 TCAAAGCATGTTCTCTGTAGTAGTA 57.537 36.000 0.00 0.00 0.00 1.82
2359 2384 8.657712 AGTACAGTTTAAGAAGAACAGGGTATT 58.342 33.333 0.00 0.00 0.00 1.89
2439 2467 7.577303 TGGCTAATTGATGGAGTAATCTCTTT 58.423 34.615 0.00 0.00 40.29 2.52
2440 2468 8.055181 TGGCTAATTGATGGAGTAATCTCTTTT 58.945 33.333 0.00 0.00 40.29 2.27
2457 2485 6.285224 TCTCTTTTGTAAATCTGGTTGTCGA 58.715 36.000 0.00 0.00 0.00 4.20
2473 2501 3.463944 TGTCGACCCAAGAGAAGAAAAC 58.536 45.455 14.12 0.00 0.00 2.43
2487 2515 3.587797 AGAAAACGAGTATGGCTTCGA 57.412 42.857 0.51 0.00 0.00 3.71
2529 2557 5.981494 TGGTGGTGGTAGTAGTAGAGATA 57.019 43.478 0.00 0.00 0.00 1.98
2540 2571 8.513774 GGTAGTAGTAGAGATATGGTTTGCTAC 58.486 40.741 0.00 0.00 0.00 3.58
2608 2644 2.281484 TTGTGAACCAGCTCGGCC 60.281 61.111 0.00 0.00 39.03 6.13
2609 2645 2.738213 CTTGTGAACCAGCTCGGCCT 62.738 60.000 0.00 0.00 39.03 5.19
2610 2646 2.743928 GTGAACCAGCTCGGCCTG 60.744 66.667 0.00 0.00 39.03 4.85
2611 2647 4.704833 TGAACCAGCTCGGCCTGC 62.705 66.667 0.00 5.17 39.03 4.85
2612 2648 4.704833 GAACCAGCTCGGCCTGCA 62.705 66.667 17.81 0.00 39.03 4.41
2613 2649 4.711949 AACCAGCTCGGCCTGCAG 62.712 66.667 17.81 6.78 39.03 4.41
2624 2660 4.441695 CCTGCAGCCGAAGCGAGA 62.442 66.667 8.66 0.00 46.67 4.04
2625 2661 2.202851 CTGCAGCCGAAGCGAGAT 60.203 61.111 0.00 0.00 46.67 2.75
2626 2662 2.202797 TGCAGCCGAAGCGAGATC 60.203 61.111 0.00 0.00 46.67 2.75
2627 2663 2.964389 GCAGCCGAAGCGAGATCC 60.964 66.667 0.00 0.00 46.67 3.36
2628 2664 2.656651 CAGCCGAAGCGAGATCCG 60.657 66.667 0.00 0.00 46.67 4.18
2629 2665 3.141488 AGCCGAAGCGAGATCCGT 61.141 61.111 5.66 0.00 46.67 4.69
2630 2666 2.655685 GCCGAAGCGAGATCCGTC 60.656 66.667 5.66 0.00 41.15 4.79
2631 2667 2.352457 CCGAAGCGAGATCCGTCG 60.352 66.667 0.22 0.22 43.08 5.12
2632 2668 2.403987 CGAAGCGAGATCCGTCGT 59.596 61.111 6.28 0.00 42.17 4.34
2633 2669 1.651730 CGAAGCGAGATCCGTCGTC 60.652 63.158 6.28 5.53 42.17 4.20
2634 2670 1.651730 GAAGCGAGATCCGTCGTCG 60.652 63.158 6.28 2.03 42.17 5.12
2644 2680 4.157817 CGTCGTCGGTAGGTTTGG 57.842 61.111 0.00 0.00 0.00 3.28
2645 2681 1.580942 CGTCGTCGGTAGGTTTGGA 59.419 57.895 0.00 0.00 0.00 3.53
2646 2682 0.730494 CGTCGTCGGTAGGTTTGGAC 60.730 60.000 0.00 0.00 0.00 4.02
2647 2683 0.600057 GTCGTCGGTAGGTTTGGACT 59.400 55.000 0.00 0.00 0.00 3.85
2648 2684 0.599558 TCGTCGGTAGGTTTGGACTG 59.400 55.000 0.00 0.00 0.00 3.51
2649 2685 0.599558 CGTCGGTAGGTTTGGACTGA 59.400 55.000 0.00 0.00 0.00 3.41
2650 2686 1.000060 CGTCGGTAGGTTTGGACTGAA 60.000 52.381 0.00 0.00 32.84 3.02
2651 2687 2.685100 GTCGGTAGGTTTGGACTGAAG 58.315 52.381 0.00 0.00 32.84 3.02
2652 2688 1.001633 TCGGTAGGTTTGGACTGAAGC 59.998 52.381 0.00 0.00 0.00 3.86
2653 2689 1.439679 GGTAGGTTTGGACTGAAGCG 58.560 55.000 0.00 0.00 0.00 4.68
2654 2690 1.439679 GTAGGTTTGGACTGAAGCGG 58.560 55.000 0.00 0.00 0.00 5.52
2655 2691 1.001633 GTAGGTTTGGACTGAAGCGGA 59.998 52.381 0.00 0.00 0.00 5.54
2656 2692 0.035458 AGGTTTGGACTGAAGCGGAG 59.965 55.000 0.00 0.00 0.00 4.63
2679 2715 5.335827 CGAAGCAAAGTTAGGATATGAGC 57.664 43.478 0.00 0.00 0.00 4.26
2680 2716 4.212214 CGAAGCAAAGTTAGGATATGAGCC 59.788 45.833 0.00 0.00 0.00 4.70
2681 2717 4.092116 AGCAAAGTTAGGATATGAGCCC 57.908 45.455 0.00 0.00 0.00 5.19
2682 2718 3.718956 AGCAAAGTTAGGATATGAGCCCT 59.281 43.478 0.00 0.00 36.60 5.19
2683 2719 4.166919 AGCAAAGTTAGGATATGAGCCCTT 59.833 41.667 0.00 0.00 34.11 3.95
2684 2720 5.369699 AGCAAAGTTAGGATATGAGCCCTTA 59.630 40.000 0.00 0.00 34.11 2.69
2685 2721 5.470437 GCAAAGTTAGGATATGAGCCCTTAC 59.530 44.000 0.00 0.00 33.58 2.34
2686 2722 6.591935 CAAAGTTAGGATATGAGCCCTTACA 58.408 40.000 0.00 0.00 35.27 2.41
2687 2723 6.824958 AAGTTAGGATATGAGCCCTTACAA 57.175 37.500 0.00 0.00 35.27 2.41
2688 2724 6.824958 AGTTAGGATATGAGCCCTTACAAA 57.175 37.500 0.00 0.00 35.27 2.83
2689 2725 7.208064 AGTTAGGATATGAGCCCTTACAAAA 57.792 36.000 0.00 0.00 35.27 2.44
2690 2726 7.639378 AGTTAGGATATGAGCCCTTACAAAAA 58.361 34.615 0.00 0.00 35.27 1.94
2691 2727 8.282256 AGTTAGGATATGAGCCCTTACAAAAAT 58.718 33.333 0.00 0.00 35.27 1.82
2692 2728 8.914011 GTTAGGATATGAGCCCTTACAAAAATT 58.086 33.333 0.00 0.00 33.60 1.82
2693 2729 7.588497 AGGATATGAGCCCTTACAAAAATTC 57.412 36.000 0.00 0.00 0.00 2.17
2694 2730 6.551227 AGGATATGAGCCCTTACAAAAATTCC 59.449 38.462 0.00 0.00 0.00 3.01
2695 2731 6.551227 GGATATGAGCCCTTACAAAAATTCCT 59.449 38.462 0.00 0.00 0.00 3.36
2696 2732 7.724061 GGATATGAGCCCTTACAAAAATTCCTA 59.276 37.037 0.00 0.00 0.00 2.94
2697 2733 9.131791 GATATGAGCCCTTACAAAAATTCCTAA 57.868 33.333 0.00 0.00 0.00 2.69
2698 2734 7.790782 ATGAGCCCTTACAAAAATTCCTAAA 57.209 32.000 0.00 0.00 0.00 1.85
2699 2735 7.604657 TGAGCCCTTACAAAAATTCCTAAAA 57.395 32.000 0.00 0.00 0.00 1.52
2700 2736 8.201242 TGAGCCCTTACAAAAATTCCTAAAAT 57.799 30.769 0.00 0.00 0.00 1.82
2701 2737 8.655901 TGAGCCCTTACAAAAATTCCTAAAATT 58.344 29.630 0.00 0.00 0.00 1.82
2702 2738 9.502091 GAGCCCTTACAAAAATTCCTAAAATTT 57.498 29.630 0.00 0.00 0.00 1.82
2703 2739 9.502091 AGCCCTTACAAAAATTCCTAAAATTTC 57.498 29.630 0.00 0.00 0.00 2.17
2704 2740 9.502091 GCCCTTACAAAAATTCCTAAAATTTCT 57.498 29.630 0.00 0.00 0.00 2.52
2734 2770 8.788325 ACAAAGTTACTGGTATTGTTATCTCC 57.212 34.615 0.00 0.00 30.50 3.71
2735 2771 7.827729 ACAAAGTTACTGGTATTGTTATCTCCC 59.172 37.037 0.00 0.00 30.50 4.30
2736 2772 7.750947 AAGTTACTGGTATTGTTATCTCCCT 57.249 36.000 0.00 0.00 0.00 4.20
2737 2773 7.125792 AGTTACTGGTATTGTTATCTCCCTG 57.874 40.000 0.00 0.00 0.00 4.45
2738 2774 4.423625 ACTGGTATTGTTATCTCCCTGC 57.576 45.455 0.00 0.00 0.00 4.85
2739 2775 3.136626 ACTGGTATTGTTATCTCCCTGCC 59.863 47.826 0.00 0.00 0.00 4.85
2740 2776 2.441750 TGGTATTGTTATCTCCCTGCCC 59.558 50.000 0.00 0.00 0.00 5.36
2741 2777 2.224793 GGTATTGTTATCTCCCTGCCCC 60.225 54.545 0.00 0.00 0.00 5.80
2742 2778 0.853530 ATTGTTATCTCCCTGCCCCC 59.146 55.000 0.00 0.00 0.00 5.40
2743 2779 1.632018 TTGTTATCTCCCTGCCCCCG 61.632 60.000 0.00 0.00 0.00 5.73
2744 2780 3.168528 TTATCTCCCTGCCCCCGC 61.169 66.667 0.00 0.00 0.00 6.13
2755 2791 4.478371 CCCCCGCGTCCCTAAACC 62.478 72.222 4.92 0.00 0.00 3.27
2756 2792 3.396570 CCCCGCGTCCCTAAACCT 61.397 66.667 4.92 0.00 0.00 3.50
2757 2793 2.059786 CCCCGCGTCCCTAAACCTA 61.060 63.158 4.92 0.00 0.00 3.08
2758 2794 1.440476 CCCGCGTCCCTAAACCTAG 59.560 63.158 4.92 0.00 0.00 3.02
2759 2795 1.440476 CCGCGTCCCTAAACCTAGG 59.560 63.158 7.41 7.41 44.10 3.02
2760 2796 1.227176 CGCGTCCCTAAACCTAGGC 60.227 63.158 9.30 0.00 43.25 3.93
2761 2797 1.227176 GCGTCCCTAAACCTAGGCG 60.227 63.158 9.30 2.47 43.25 5.52
2762 2798 1.669999 GCGTCCCTAAACCTAGGCGA 61.670 60.000 9.30 0.00 43.25 5.54
2763 2799 0.101939 CGTCCCTAAACCTAGGCGAC 59.898 60.000 9.30 4.35 43.25 5.19
2764 2800 1.188863 GTCCCTAAACCTAGGCGACA 58.811 55.000 9.30 0.00 43.25 4.35
2765 2801 1.134877 GTCCCTAAACCTAGGCGACAC 60.135 57.143 9.30 0.00 43.25 3.67
2766 2802 0.179119 CCCTAAACCTAGGCGACACG 60.179 60.000 9.30 0.00 43.25 4.49
2767 2803 0.179119 CCTAAACCTAGGCGACACGG 60.179 60.000 9.30 0.00 38.50 4.94
2768 2804 0.179119 CTAAACCTAGGCGACACGGG 60.179 60.000 9.30 0.00 0.00 5.28
2769 2805 1.606885 TAAACCTAGGCGACACGGGG 61.607 60.000 9.30 0.00 0.00 5.73
2788 2824 4.819761 GCGATCTGCAGCCACCGA 62.820 66.667 9.47 0.00 45.45 4.69
2789 2825 2.887568 CGATCTGCAGCCACCGAC 60.888 66.667 9.47 0.00 0.00 4.79
2790 2826 2.512515 GATCTGCAGCCACCGACC 60.513 66.667 9.47 0.00 0.00 4.79
2791 2827 4.101448 ATCTGCAGCCACCGACCC 62.101 66.667 9.47 0.00 0.00 4.46
2793 2829 4.641645 CTGCAGCCACCGACCCAA 62.642 66.667 0.00 0.00 0.00 4.12
2794 2830 4.196778 TGCAGCCACCGACCCAAA 62.197 61.111 0.00 0.00 0.00 3.28
2795 2831 3.365265 GCAGCCACCGACCCAAAG 61.365 66.667 0.00 0.00 0.00 2.77
2796 2832 2.672996 CAGCCACCGACCCAAAGG 60.673 66.667 0.00 0.00 40.04 3.11
2797 2833 4.660938 AGCCACCGACCCAAAGGC 62.661 66.667 0.00 0.00 45.54 4.35
2799 2835 3.966543 CCACCGACCCAAAGGCCT 61.967 66.667 0.00 0.00 36.11 5.19
2800 2836 2.359975 CACCGACCCAAAGGCCTC 60.360 66.667 5.23 0.00 36.11 4.70
2801 2837 3.647771 ACCGACCCAAAGGCCTCC 61.648 66.667 5.23 0.00 36.11 4.30
2802 2838 3.330720 CCGACCCAAAGGCCTCCT 61.331 66.667 5.23 0.00 36.11 3.69
2803 2839 2.269241 CGACCCAAAGGCCTCCTC 59.731 66.667 5.23 0.00 36.11 3.71
2804 2840 2.677848 GACCCAAAGGCCTCCTCC 59.322 66.667 5.23 0.00 36.11 4.30
2805 2841 2.941583 ACCCAAAGGCCTCCTCCC 60.942 66.667 5.23 0.00 36.11 4.30
2806 2842 2.615288 CCCAAAGGCCTCCTCCCT 60.615 66.667 5.23 0.00 30.89 4.20
2807 2843 2.684499 CCCAAAGGCCTCCTCCCTC 61.684 68.421 5.23 0.00 30.89 4.30
2808 2844 2.586792 CAAAGGCCTCCTCCCTCG 59.413 66.667 5.23 0.00 30.89 4.63
2809 2845 2.122954 AAAGGCCTCCTCCCTCGT 59.877 61.111 5.23 0.00 30.89 4.18
2810 2846 1.990614 AAAGGCCTCCTCCCTCGTC 60.991 63.158 5.23 0.00 30.89 4.20
2811 2847 3.986116 AAGGCCTCCTCCCTCGTCC 62.986 68.421 5.23 0.00 30.89 4.79
2812 2848 4.467107 GGCCTCCTCCCTCGTCCT 62.467 72.222 0.00 0.00 0.00 3.85
2813 2849 2.835895 GCCTCCTCCCTCGTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
2814 2850 3.011885 CCTCCTCCCTCGTCCTCT 58.988 66.667 0.00 0.00 0.00 3.69
2815 2851 1.152839 CCTCCTCCCTCGTCCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
2816 2852 1.641552 CCTCCTCCCTCGTCCTCTCT 61.642 65.000 0.00 0.00 0.00 3.10
2817 2853 0.179029 CTCCTCCCTCGTCCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
2818 2854 1.152839 CCTCCCTCGTCCTCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
2819 2855 1.152839 CTCCCTCGTCCTCTCTCCC 60.153 68.421 0.00 0.00 0.00 4.30
2820 2856 2.123640 CCCTCGTCCTCTCTCCCC 60.124 72.222 0.00 0.00 0.00 4.81
2821 2857 2.695970 CCCTCGTCCTCTCTCCCCT 61.696 68.421 0.00 0.00 0.00 4.79
2822 2858 1.354168 CCCTCGTCCTCTCTCCCCTA 61.354 65.000 0.00 0.00 0.00 3.53
2823 2859 0.179012 CCTCGTCCTCTCTCCCCTAC 60.179 65.000 0.00 0.00 0.00 3.18
2824 2860 0.179012 CTCGTCCTCTCTCCCCTACC 60.179 65.000 0.00 0.00 0.00 3.18
2825 2861 1.526455 CGTCCTCTCTCCCCTACCG 60.526 68.421 0.00 0.00 0.00 4.02
2826 2862 1.829096 GTCCTCTCTCCCCTACCGC 60.829 68.421 0.00 0.00 0.00 5.68
2827 2863 2.522193 CCTCTCTCCCCTACCGCC 60.522 72.222 0.00 0.00 0.00 6.13
2828 2864 2.907917 CTCTCTCCCCTACCGCCG 60.908 72.222 0.00 0.00 0.00 6.46
2858 2894 4.473520 CCCGTAGCCTGGCCAGTG 62.474 72.222 30.63 22.12 0.00 3.66
2859 2895 3.390521 CCGTAGCCTGGCCAGTGA 61.391 66.667 30.63 12.98 0.00 3.41
2860 2896 2.735772 CCGTAGCCTGGCCAGTGAT 61.736 63.158 30.63 22.10 0.00 3.06
2861 2897 1.522355 CGTAGCCTGGCCAGTGATG 60.522 63.158 30.63 16.64 0.00 3.07
2862 2898 1.153086 GTAGCCTGGCCAGTGATGG 60.153 63.158 30.63 17.57 0.00 3.51
2889 2925 4.200283 GGCTCTCCCTCTCGCGTG 62.200 72.222 5.77 3.13 0.00 5.34
2890 2926 4.200283 GCTCTCCCTCTCGCGTGG 62.200 72.222 5.77 7.30 0.00 4.94
2891 2927 2.752238 CTCTCCCTCTCGCGTGGT 60.752 66.667 5.77 0.00 0.00 4.16
2892 2928 3.057547 CTCTCCCTCTCGCGTGGTG 62.058 68.421 5.77 4.35 0.00 4.17
2893 2929 4.135153 CTCCCTCTCGCGTGGTGG 62.135 72.222 5.77 9.89 0.00 4.61
2903 2939 3.414700 CGTGGTGGCTGCGTCTTC 61.415 66.667 0.00 0.00 0.00 2.87
2904 2940 3.050275 GTGGTGGCTGCGTCTTCC 61.050 66.667 0.00 0.00 0.00 3.46
2905 2941 4.329545 TGGTGGCTGCGTCTTCCC 62.330 66.667 0.00 0.00 0.00 3.97
2907 2943 4.021925 GTGGCTGCGTCTTCCCCT 62.022 66.667 0.00 0.00 0.00 4.79
2908 2944 4.020617 TGGCTGCGTCTTCCCCTG 62.021 66.667 0.00 0.00 0.00 4.45
2909 2945 4.785453 GGCTGCGTCTTCCCCTGG 62.785 72.222 0.00 0.00 0.00 4.45
2930 2966 3.716006 CGGCGGCACACAGAACTG 61.716 66.667 10.53 0.00 0.00 3.16
2931 2967 4.030452 GGCGGCACACAGAACTGC 62.030 66.667 3.07 0.00 34.88 4.40
2932 2968 4.374702 GCGGCACACAGAACTGCG 62.375 66.667 0.00 0.00 33.94 5.18
2933 2969 3.716006 CGGCACACAGAACTGCGG 61.716 66.667 1.46 0.00 33.94 5.69
2934 2970 3.357079 GGCACACAGAACTGCGGG 61.357 66.667 0.00 0.00 33.94 6.13
2935 2971 3.357079 GCACACAGAACTGCGGGG 61.357 66.667 0.00 0.00 0.00 5.73
2936 2972 3.357079 CACACAGAACTGCGGGGC 61.357 66.667 0.00 0.00 0.00 5.80
2937 2973 3.872603 ACACAGAACTGCGGGGCA 61.873 61.111 0.00 0.00 36.92 5.36
2938 2974 3.357079 CACAGAACTGCGGGGCAC 61.357 66.667 0.00 0.00 33.79 5.01
2974 3010 4.681978 GGTTCCTGCGGCGAGTGT 62.682 66.667 12.98 0.00 0.00 3.55
2975 3011 3.414700 GTTCCTGCGGCGAGTGTG 61.415 66.667 12.98 0.00 0.00 3.82
2976 3012 3.611674 TTCCTGCGGCGAGTGTGA 61.612 61.111 12.98 0.00 0.00 3.58
2977 3013 3.858868 TTCCTGCGGCGAGTGTGAC 62.859 63.158 12.98 0.00 0.00 3.67
2978 3014 4.662961 CCTGCGGCGAGTGTGACA 62.663 66.667 12.98 0.00 0.00 3.58
2979 3015 3.406361 CTGCGGCGAGTGTGACAC 61.406 66.667 12.98 7.83 34.10 3.67
2980 3016 4.961511 TGCGGCGAGTGTGACACC 62.962 66.667 12.98 3.13 34.49 4.16
2985 3021 3.612681 CGAGTGTGACACCGGGGT 61.613 66.667 10.56 10.56 34.49 4.95
2986 3022 2.826702 GAGTGTGACACCGGGGTT 59.173 61.111 12.70 0.00 34.49 4.11
2987 3023 1.808531 CGAGTGTGACACCGGGGTTA 61.809 60.000 12.70 2.78 34.49 2.85
2988 3024 0.037605 GAGTGTGACACCGGGGTTAG 60.038 60.000 12.70 0.00 34.49 2.34
2989 3025 0.470456 AGTGTGACACCGGGGTTAGA 60.470 55.000 12.70 0.91 34.49 2.10
2990 3026 0.037605 GTGTGACACCGGGGTTAGAG 60.038 60.000 12.70 0.00 0.00 2.43
2991 3027 1.079336 GTGACACCGGGGTTAGAGC 60.079 63.158 12.70 0.00 0.00 4.09
2992 3028 1.534476 TGACACCGGGGTTAGAGCA 60.534 57.895 12.70 0.00 0.00 4.26
2993 3029 1.218316 GACACCGGGGTTAGAGCAG 59.782 63.158 12.70 0.00 0.00 4.24
2994 3030 2.240162 GACACCGGGGTTAGAGCAGG 62.240 65.000 12.70 0.00 0.00 4.85
2995 3031 3.400054 ACCGGGGTTAGAGCAGGC 61.400 66.667 6.32 0.00 0.00 4.85
2996 3032 4.530857 CCGGGGTTAGAGCAGGCG 62.531 72.222 0.00 0.00 0.00 5.52
2999 3035 4.143333 GGGTTAGAGCAGGCGCGA 62.143 66.667 12.10 0.00 45.49 5.87
3000 3036 2.107141 GGTTAGAGCAGGCGCGAT 59.893 61.111 12.10 0.00 45.49 4.58
3001 3037 1.362717 GGTTAGAGCAGGCGCGATA 59.637 57.895 12.10 0.00 45.49 2.92
3002 3038 0.940047 GGTTAGAGCAGGCGCGATAC 60.940 60.000 12.10 0.00 45.49 2.24
3003 3039 0.940047 GTTAGAGCAGGCGCGATACC 60.940 60.000 12.10 0.26 45.49 2.73
3004 3040 2.402282 TTAGAGCAGGCGCGATACCG 62.402 60.000 12.10 0.00 45.49 4.02
3014 3050 3.592814 CGATACCGCGGCAGAGGA 61.593 66.667 28.58 3.72 39.96 3.71
3015 3051 2.336809 GATACCGCGGCAGAGGAG 59.663 66.667 28.58 0.00 39.96 3.69
3016 3052 3.850095 GATACCGCGGCAGAGGAGC 62.850 68.421 28.58 2.31 39.96 4.70
3045 3081 2.356793 CGGCCCAGATCGCAGATC 60.357 66.667 0.00 9.60 45.12 2.75
3046 3082 2.865598 CGGCCCAGATCGCAGATCT 61.866 63.158 13.15 13.15 45.12 2.75
3047 3083 1.005156 GGCCCAGATCGCAGATCTC 60.005 63.158 15.23 7.34 45.12 2.75
3048 3084 1.744639 GCCCAGATCGCAGATCTCA 59.255 57.895 15.23 0.00 45.12 3.27
3049 3085 0.599728 GCCCAGATCGCAGATCTCAC 60.600 60.000 15.23 6.99 45.12 3.51
3050 3086 0.033228 CCCAGATCGCAGATCTCACC 59.967 60.000 15.23 0.00 45.12 4.02
3051 3087 0.318529 CCAGATCGCAGATCTCACCG 60.319 60.000 15.23 0.00 45.12 4.94
3052 3088 0.383590 CAGATCGCAGATCTCACCGT 59.616 55.000 15.23 0.00 45.12 4.83
3053 3089 1.604278 CAGATCGCAGATCTCACCGTA 59.396 52.381 15.23 0.00 45.12 4.02
3054 3090 1.604755 AGATCGCAGATCTCACCGTAC 59.395 52.381 13.15 0.00 45.12 3.67
3055 3091 0.669077 ATCGCAGATCTCACCGTACC 59.331 55.000 0.00 0.00 45.12 3.34
3056 3092 1.065928 CGCAGATCTCACCGTACCC 59.934 63.158 0.00 0.00 0.00 3.69
3057 3093 1.663379 CGCAGATCTCACCGTACCCA 61.663 60.000 0.00 0.00 0.00 4.51
3058 3094 0.103208 GCAGATCTCACCGTACCCAG 59.897 60.000 0.00 0.00 0.00 4.45
3059 3095 1.763968 CAGATCTCACCGTACCCAGA 58.236 55.000 0.00 0.00 0.00 3.86
3060 3096 2.311463 CAGATCTCACCGTACCCAGAT 58.689 52.381 0.00 0.00 0.00 2.90
3061 3097 2.035193 CAGATCTCACCGTACCCAGATG 59.965 54.545 0.00 0.00 0.00 2.90
3062 3098 1.341531 GATCTCACCGTACCCAGATGG 59.658 57.143 0.00 0.00 41.37 3.51
3072 3108 2.202932 CCAGATGGGCTTCGACGG 60.203 66.667 0.00 0.00 0.00 4.79
3073 3109 2.202932 CAGATGGGCTTCGACGGG 60.203 66.667 0.00 0.00 0.00 5.28
3074 3110 4.162690 AGATGGGCTTCGACGGGC 62.163 66.667 0.00 0.00 0.00 6.13
3090 3126 4.899239 GCCGGCGGATCTGGTGAG 62.899 72.222 33.44 0.00 43.46 3.51
3091 3127 4.899239 CCGGCGGATCTGGTGAGC 62.899 72.222 24.41 0.00 36.43 4.26
3093 3129 4.148825 GGCGGATCTGGTGAGCGT 62.149 66.667 3.14 0.00 0.00 5.07
3094 3130 2.583593 GCGGATCTGGTGAGCGTC 60.584 66.667 3.14 0.00 0.00 5.19
3095 3131 3.069980 GCGGATCTGGTGAGCGTCT 62.070 63.158 3.14 0.00 0.00 4.18
3096 3132 1.725557 GCGGATCTGGTGAGCGTCTA 61.726 60.000 3.14 0.00 0.00 2.59
3097 3133 0.029567 CGGATCTGGTGAGCGTCTAC 59.970 60.000 0.00 0.00 0.00 2.59
3098 3134 1.103803 GGATCTGGTGAGCGTCTACA 58.896 55.000 0.00 0.00 0.00 2.74
3099 3135 1.066303 GGATCTGGTGAGCGTCTACAG 59.934 57.143 0.00 0.00 0.00 2.74
3100 3136 1.066303 GATCTGGTGAGCGTCTACAGG 59.934 57.143 0.00 0.00 0.00 4.00
3101 3137 1.153745 CTGGTGAGCGTCTACAGGC 60.154 63.158 0.00 0.00 0.00 4.85
3102 3138 2.202623 GGTGAGCGTCTACAGGCG 60.203 66.667 0.00 0.00 38.51 5.52
3103 3139 2.202623 GTGAGCGTCTACAGGCGG 60.203 66.667 5.28 0.00 38.51 6.13
3104 3140 3.449227 TGAGCGTCTACAGGCGGG 61.449 66.667 5.28 0.00 38.51 6.13
3105 3141 4.874977 GAGCGTCTACAGGCGGGC 62.875 72.222 5.28 0.00 38.51 6.13
3107 3143 4.530857 GCGTCTACAGGCGGGCAT 62.531 66.667 5.28 0.00 0.00 4.40
3108 3144 2.586079 CGTCTACAGGCGGGCATG 60.586 66.667 3.78 3.49 0.00 4.06
3109 3145 2.203070 GTCTACAGGCGGGCATGG 60.203 66.667 10.25 0.00 31.33 3.66
3110 3146 2.687200 TCTACAGGCGGGCATGGT 60.687 61.111 10.25 1.52 31.33 3.55
3111 3147 2.514592 CTACAGGCGGGCATGGTG 60.515 66.667 10.25 0.00 31.33 4.17
3112 3148 4.108299 TACAGGCGGGCATGGTGG 62.108 66.667 10.25 0.00 31.33 4.61
3141 3177 4.569180 CCGGCCTAGGCACCATGG 62.569 72.222 34.09 21.88 44.11 3.66
3142 3178 3.797353 CGGCCTAGGCACCATGGT 61.797 66.667 34.09 13.00 44.11 3.55
3144 3180 2.124151 GCCTAGGCACCATGGTGG 60.124 66.667 39.04 26.37 45.49 4.61
3180 3216 4.115199 GGTGGCGGCCTGGATTCT 62.115 66.667 21.46 0.00 0.00 2.40
3181 3217 2.514824 GTGGCGGCCTGGATTCTC 60.515 66.667 21.46 0.00 0.00 2.87
3182 3218 3.797353 TGGCGGCCTGGATTCTCC 61.797 66.667 21.46 0.00 36.96 3.71
3183 3219 3.483869 GGCGGCCTGGATTCTCCT 61.484 66.667 12.87 0.00 37.46 3.69
3184 3220 2.592308 GCGGCCTGGATTCTCCTT 59.408 61.111 0.00 0.00 37.46 3.36
3185 3221 1.524849 GCGGCCTGGATTCTCCTTC 60.525 63.158 0.00 0.00 37.46 3.46
3186 3222 1.147153 CGGCCTGGATTCTCCTTCC 59.853 63.158 0.00 0.00 37.46 3.46
3187 3223 1.626356 CGGCCTGGATTCTCCTTCCA 61.626 60.000 0.00 0.00 40.96 3.53
3192 3228 1.584724 TGGATTCTCCTTCCAGTCCC 58.415 55.000 0.00 0.00 38.35 4.46
3193 3229 0.840617 GGATTCTCCTTCCAGTCCCC 59.159 60.000 0.00 0.00 32.53 4.81
3194 3230 0.466124 GATTCTCCTTCCAGTCCCCG 59.534 60.000 0.00 0.00 0.00 5.73
3195 3231 0.983378 ATTCTCCTTCCAGTCCCCGG 60.983 60.000 0.00 0.00 0.00 5.73
3196 3232 3.787001 CTCCTTCCAGTCCCCGGC 61.787 72.222 0.00 0.00 0.00 6.13
3197 3233 4.649705 TCCTTCCAGTCCCCGGCA 62.650 66.667 0.00 0.00 0.00 5.69
3198 3234 4.101448 CCTTCCAGTCCCCGGCAG 62.101 72.222 0.00 0.00 0.00 4.85
3199 3235 4.785453 CTTCCAGTCCCCGGCAGC 62.785 72.222 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.828925 GTGCCTCTCGCCAGCTCC 62.829 72.222 0.00 0.00 36.24 4.70
103 104 1.802636 CAAAGGTACCATGCAGCGG 59.197 57.895 15.94 3.41 0.00 5.52
104 105 1.137404 GCAAAGGTACCATGCAGCG 59.863 57.895 28.16 7.29 39.81 5.18
106 107 0.729116 CGAGCAAAGGTACCATGCAG 59.271 55.000 31.96 24.32 42.45 4.41
107 108 0.676466 CCGAGCAAAGGTACCATGCA 60.676 55.000 31.96 0.00 42.45 3.96
110 111 2.119495 AGATCCGAGCAAAGGTACCAT 58.881 47.619 15.94 0.00 0.00 3.55
111 112 1.207089 CAGATCCGAGCAAAGGTACCA 59.793 52.381 15.94 0.00 0.00 3.25
112 113 1.473434 CCAGATCCGAGCAAAGGTACC 60.473 57.143 2.73 2.73 0.00 3.34
115 116 0.693049 AACCAGATCCGAGCAAAGGT 59.307 50.000 0.00 0.00 0.00 3.50
116 117 1.089920 CAACCAGATCCGAGCAAAGG 58.910 55.000 0.00 0.00 0.00 3.11
144 148 0.866061 CCGGAGACACGCGAACATAG 60.866 60.000 15.93 0.00 0.00 2.23
161 166 3.290776 GATCGGAAGGATCCAACCG 57.709 57.895 30.70 30.70 46.97 4.44
174 179 4.852104 CCGATGAAGAATAACGTAGATCGG 59.148 45.833 0.00 0.00 43.53 4.18
232 239 4.218635 AGTCAGAAAGTCATCGTGCTAAGA 59.781 41.667 0.00 0.00 0.00 2.10
243 250 6.320418 TGTTGTAGTAGACAGTCAGAAAGTCA 59.680 38.462 2.66 0.00 39.88 3.41
244 251 6.736123 TGTTGTAGTAGACAGTCAGAAAGTC 58.264 40.000 2.66 0.00 39.88 3.01
249 256 6.096423 ACAACTTGTTGTAGTAGACAGTCAGA 59.904 38.462 16.35 0.00 39.88 3.27
251 258 6.040247 CACAACTTGTTGTAGTAGACAGTCA 58.960 40.000 17.26 0.00 39.88 3.41
282 289 2.340673 ATCGTCCCTCCCTCGTCGAT 62.341 60.000 0.00 0.00 34.08 3.59
283 290 3.040206 ATCGTCCCTCCCTCGTCGA 62.040 63.158 0.00 0.00 0.00 4.20
286 293 1.753463 GTCATCGTCCCTCCCTCGT 60.753 63.158 0.00 0.00 0.00 4.18
312 319 0.946221 ACTGAAGCAAGCCGAAGACG 60.946 55.000 0.00 0.00 39.43 4.18
314 321 1.230635 GCACTGAAGCAAGCCGAAGA 61.231 55.000 0.00 0.00 0.00 2.87
323 330 1.068588 ACGAGTACAAGCACTGAAGCA 59.931 47.619 0.00 0.00 36.85 3.91
339 346 1.202154 CGTAGACCACCTAGCAACGAG 60.202 57.143 0.00 0.00 0.00 4.18
385 392 1.671845 GGCAGTACAACGAACACCAAA 59.328 47.619 0.00 0.00 0.00 3.28
386 393 1.301423 GGCAGTACAACGAACACCAA 58.699 50.000 0.00 0.00 0.00 3.67
395 402 5.355071 TCATCTTCAATCATGGCAGTACAAC 59.645 40.000 0.00 0.00 0.00 3.32
404 411 5.163884 CCGATCGATTCATCTTCAATCATGG 60.164 44.000 18.66 0.00 31.53 3.66
406 413 5.787380 TCCGATCGATTCATCTTCAATCAT 58.213 37.500 18.66 0.00 31.53 2.45
422 429 1.346365 TGCGAGAAAACTTCCGATCG 58.654 50.000 8.51 8.51 0.00 3.69
446 453 9.499479 ACTTGATGCGATAATTCTGATAATTCT 57.501 29.630 0.00 0.00 0.00 2.40
478 485 0.179121 TGATGTGCTAGTTACCGCGG 60.179 55.000 26.86 26.86 0.00 6.46
479 486 1.635844 TTGATGTGCTAGTTACCGCG 58.364 50.000 0.00 0.00 0.00 6.46
480 487 3.621268 TGAATTGATGTGCTAGTTACCGC 59.379 43.478 0.00 0.00 0.00 5.68
481 488 4.260375 GCTGAATTGATGTGCTAGTTACCG 60.260 45.833 0.00 0.00 0.00 4.02
482 489 4.878397 AGCTGAATTGATGTGCTAGTTACC 59.122 41.667 0.00 0.00 31.71 2.85
565 572 7.498900 CCACATGGTTACACACATTGTATAGAT 59.501 37.037 0.00 0.00 40.53 1.98
604 611 7.203218 TGATGATCAATACAGGTTACTTCTCG 58.797 38.462 0.00 0.00 0.00 4.04
660 667 2.955660 ACAGTAGGCTCTACATCTCTGC 59.044 50.000 12.89 0.00 0.00 4.26
662 669 4.414182 AGGTACAGTAGGCTCTACATCTCT 59.586 45.833 12.89 3.71 0.00 3.10
745 759 4.083057 GCATTTCCTGTTTCCTTGTCTCTC 60.083 45.833 0.00 0.00 0.00 3.20
1068 1084 0.173481 CGCTGATGTCGAAGAGGGAA 59.827 55.000 0.00 0.00 36.95 3.97
1152 1171 3.066369 TCGTATTCGTCATCACTCTGC 57.934 47.619 0.00 0.00 38.33 4.26
1392 1417 4.341783 GCCTGTGCCTCAGCTGGT 62.342 66.667 15.13 0.00 42.38 4.00
1422 1447 3.883744 CTTCTGAGTTGGCGGCGGT 62.884 63.158 9.78 0.00 0.00 5.68
1434 1459 1.251527 GGGACGTCTGCTCCTTCTGA 61.252 60.000 16.46 0.00 0.00 3.27
2359 2384 0.378962 CCTTTTCGGTTCAACACGCA 59.621 50.000 0.00 0.00 0.00 5.24
2457 2485 3.840124 ACTCGTTTTCTTCTCTTGGGT 57.160 42.857 0.00 0.00 0.00 4.51
2460 2488 4.932200 AGCCATACTCGTTTTCTTCTCTTG 59.068 41.667 0.00 0.00 0.00 3.02
2473 2501 2.223611 ACTACGATCGAAGCCATACTCG 59.776 50.000 24.34 0.00 0.00 4.18
2487 2515 6.049149 CACCATTGACAAGGATAACTACGAT 58.951 40.000 0.42 0.00 0.00 3.73
2529 2557 1.171308 CAGCAGCTGTAGCAAACCAT 58.829 50.000 16.64 0.00 45.16 3.55
2589 2625 1.598130 GCCGAGCTGGTTCACAAGT 60.598 57.895 0.00 0.00 41.21 3.16
2608 2644 2.202851 ATCTCGCTTCGGCTGCAG 60.203 61.111 10.11 10.11 39.13 4.41
2609 2645 2.202797 GATCTCGCTTCGGCTGCA 60.203 61.111 0.50 0.00 39.13 4.41
2610 2646 2.964389 GGATCTCGCTTCGGCTGC 60.964 66.667 0.00 0.00 39.13 5.25
2611 2647 2.656651 CGGATCTCGCTTCGGCTG 60.657 66.667 0.00 0.00 39.13 4.85
2612 2648 3.127352 GACGGATCTCGCTTCGGCT 62.127 63.158 3.85 0.00 43.89 5.52
2613 2649 2.655685 GACGGATCTCGCTTCGGC 60.656 66.667 3.85 0.00 43.89 5.54
2614 2650 2.352457 CGACGGATCTCGCTTCGG 60.352 66.667 3.85 0.00 43.89 4.30
2615 2651 1.651730 GACGACGGATCTCGCTTCG 60.652 63.158 0.00 8.92 43.89 3.79
2616 2652 1.651730 CGACGACGGATCTCGCTTC 60.652 63.158 0.00 0.00 43.89 3.86
2617 2653 2.403987 CGACGACGGATCTCGCTT 59.596 61.111 0.00 0.00 43.89 4.68
2627 2663 0.730494 GTCCAAACCTACCGACGACG 60.730 60.000 0.00 0.00 39.43 5.12
2628 2664 0.600057 AGTCCAAACCTACCGACGAC 59.400 55.000 0.00 0.00 0.00 4.34
2629 2665 0.599558 CAGTCCAAACCTACCGACGA 59.400 55.000 0.00 0.00 0.00 4.20
2630 2666 0.599558 TCAGTCCAAACCTACCGACG 59.400 55.000 0.00 0.00 0.00 5.12
2631 2667 2.685100 CTTCAGTCCAAACCTACCGAC 58.315 52.381 0.00 0.00 0.00 4.79
2632 2668 1.001633 GCTTCAGTCCAAACCTACCGA 59.998 52.381 0.00 0.00 0.00 4.69
2633 2669 1.439679 GCTTCAGTCCAAACCTACCG 58.560 55.000 0.00 0.00 0.00 4.02
2634 2670 1.439679 CGCTTCAGTCCAAACCTACC 58.560 55.000 0.00 0.00 0.00 3.18
2635 2671 1.001633 TCCGCTTCAGTCCAAACCTAC 59.998 52.381 0.00 0.00 0.00 3.18
2636 2672 1.275291 CTCCGCTTCAGTCCAAACCTA 59.725 52.381 0.00 0.00 0.00 3.08
2637 2673 0.035458 CTCCGCTTCAGTCCAAACCT 59.965 55.000 0.00 0.00 0.00 3.50
2638 2674 1.578206 GCTCCGCTTCAGTCCAAACC 61.578 60.000 0.00 0.00 0.00 3.27
2639 2675 1.869690 GCTCCGCTTCAGTCCAAAC 59.130 57.895 0.00 0.00 0.00 2.93
2640 2676 1.667830 CGCTCCGCTTCAGTCCAAA 60.668 57.895 0.00 0.00 0.00 3.28
2641 2677 2.048222 CGCTCCGCTTCAGTCCAA 60.048 61.111 0.00 0.00 0.00 3.53
2642 2678 2.492449 CTTCGCTCCGCTTCAGTCCA 62.492 60.000 0.00 0.00 0.00 4.02
2643 2679 1.807573 CTTCGCTCCGCTTCAGTCC 60.808 63.158 0.00 0.00 0.00 3.85
2644 2680 2.448705 GCTTCGCTCCGCTTCAGTC 61.449 63.158 0.00 0.00 0.00 3.51
2645 2681 2.433318 GCTTCGCTCCGCTTCAGT 60.433 61.111 0.00 0.00 0.00 3.41
2646 2682 1.568612 TTTGCTTCGCTCCGCTTCAG 61.569 55.000 0.00 0.00 0.00 3.02
2647 2683 1.568612 CTTTGCTTCGCTCCGCTTCA 61.569 55.000 0.00 0.00 0.00 3.02
2648 2684 1.133458 CTTTGCTTCGCTCCGCTTC 59.867 57.895 0.00 0.00 0.00 3.86
2649 2685 1.166531 AACTTTGCTTCGCTCCGCTT 61.167 50.000 0.00 0.00 0.00 4.68
2650 2686 0.320421 TAACTTTGCTTCGCTCCGCT 60.320 50.000 0.00 0.00 0.00 5.52
2651 2687 0.095417 CTAACTTTGCTTCGCTCCGC 59.905 55.000 0.00 0.00 0.00 5.54
2652 2688 0.721718 CCTAACTTTGCTTCGCTCCG 59.278 55.000 0.00 0.00 0.00 4.63
2653 2689 2.094762 TCCTAACTTTGCTTCGCTCC 57.905 50.000 0.00 0.00 0.00 4.70
2654 2690 5.050490 TCATATCCTAACTTTGCTTCGCTC 58.950 41.667 0.00 0.00 0.00 5.03
2655 2691 5.023533 TCATATCCTAACTTTGCTTCGCT 57.976 39.130 0.00 0.00 0.00 4.93
2656 2692 4.319118 GCTCATATCCTAACTTTGCTTCGC 60.319 45.833 0.00 0.00 0.00 4.70
2657 2693 4.212214 GGCTCATATCCTAACTTTGCTTCG 59.788 45.833 0.00 0.00 0.00 3.79
2658 2694 4.517075 GGGCTCATATCCTAACTTTGCTTC 59.483 45.833 0.00 0.00 0.00 3.86
2659 2695 4.166919 AGGGCTCATATCCTAACTTTGCTT 59.833 41.667 0.00 0.00 0.00 3.91
2660 2696 3.718956 AGGGCTCATATCCTAACTTTGCT 59.281 43.478 0.00 0.00 0.00 3.91
2661 2697 4.092116 AGGGCTCATATCCTAACTTTGC 57.908 45.455 0.00 0.00 0.00 3.68
2662 2698 6.591935 TGTAAGGGCTCATATCCTAACTTTG 58.408 40.000 0.00 0.00 32.21 2.77
2663 2699 6.824958 TGTAAGGGCTCATATCCTAACTTT 57.175 37.500 0.00 0.00 32.21 2.66
2664 2700 6.824958 TTGTAAGGGCTCATATCCTAACTT 57.175 37.500 0.00 0.00 32.21 2.66
2665 2701 6.824958 TTTGTAAGGGCTCATATCCTAACT 57.175 37.500 0.00 0.00 32.21 2.24
2666 2702 7.875327 TTTTTGTAAGGGCTCATATCCTAAC 57.125 36.000 0.00 0.00 32.21 2.34
2667 2703 9.131791 GAATTTTTGTAAGGGCTCATATCCTAA 57.868 33.333 0.00 0.00 32.21 2.69
2668 2704 7.724061 GGAATTTTTGTAAGGGCTCATATCCTA 59.276 37.037 0.00 0.00 32.21 2.94
2669 2705 6.551227 GGAATTTTTGTAAGGGCTCATATCCT 59.449 38.462 0.00 0.00 34.29 3.24
2670 2706 6.551227 AGGAATTTTTGTAAGGGCTCATATCC 59.449 38.462 0.00 0.00 0.00 2.59
2671 2707 7.588497 AGGAATTTTTGTAAGGGCTCATATC 57.412 36.000 0.00 0.00 0.00 1.63
2672 2708 9.487442 TTTAGGAATTTTTGTAAGGGCTCATAT 57.513 29.630 0.00 0.00 0.00 1.78
2673 2709 8.887264 TTTAGGAATTTTTGTAAGGGCTCATA 57.113 30.769 0.00 0.00 0.00 2.15
2674 2710 7.790782 TTTAGGAATTTTTGTAAGGGCTCAT 57.209 32.000 0.00 0.00 0.00 2.90
2675 2711 7.604657 TTTTAGGAATTTTTGTAAGGGCTCA 57.395 32.000 0.00 0.00 0.00 4.26
2676 2712 9.502091 AAATTTTAGGAATTTTTGTAAGGGCTC 57.498 29.630 0.00 0.00 0.00 4.70
2677 2713 9.502091 GAAATTTTAGGAATTTTTGTAAGGGCT 57.498 29.630 0.00 0.00 30.68 5.19
2678 2714 9.502091 AGAAATTTTAGGAATTTTTGTAAGGGC 57.498 29.630 0.00 0.00 30.68 5.19
2708 2744 9.880157 GGAGATAACAATACCAGTAACTTTGTA 57.120 33.333 0.00 0.00 30.76 2.41
2709 2745 7.827729 GGGAGATAACAATACCAGTAACTTTGT 59.172 37.037 0.00 0.00 32.19 2.83
2710 2746 8.047310 AGGGAGATAACAATACCAGTAACTTTG 58.953 37.037 0.00 0.00 0.00 2.77
2711 2747 8.047310 CAGGGAGATAACAATACCAGTAACTTT 58.953 37.037 0.00 0.00 0.00 2.66
2712 2748 7.565680 CAGGGAGATAACAATACCAGTAACTT 58.434 38.462 0.00 0.00 0.00 2.66
2713 2749 6.408206 GCAGGGAGATAACAATACCAGTAACT 60.408 42.308 0.00 0.00 0.00 2.24
2714 2750 5.758784 GCAGGGAGATAACAATACCAGTAAC 59.241 44.000 0.00 0.00 0.00 2.50
2715 2751 5.163237 GGCAGGGAGATAACAATACCAGTAA 60.163 44.000 0.00 0.00 0.00 2.24
2716 2752 4.347000 GGCAGGGAGATAACAATACCAGTA 59.653 45.833 0.00 0.00 0.00 2.74
2717 2753 3.136626 GGCAGGGAGATAACAATACCAGT 59.863 47.826 0.00 0.00 0.00 4.00
2718 2754 3.496870 GGGCAGGGAGATAACAATACCAG 60.497 52.174 0.00 0.00 0.00 4.00
2719 2755 2.441750 GGGCAGGGAGATAACAATACCA 59.558 50.000 0.00 0.00 0.00 3.25
2720 2756 2.224793 GGGGCAGGGAGATAACAATACC 60.225 54.545 0.00 0.00 0.00 2.73
2721 2757 2.224793 GGGGGCAGGGAGATAACAATAC 60.225 54.545 0.00 0.00 0.00 1.89
2722 2758 2.062636 GGGGGCAGGGAGATAACAATA 58.937 52.381 0.00 0.00 0.00 1.90
2723 2759 0.853530 GGGGGCAGGGAGATAACAAT 59.146 55.000 0.00 0.00 0.00 2.71
2724 2760 1.632018 CGGGGGCAGGGAGATAACAA 61.632 60.000 0.00 0.00 0.00 2.83
2725 2761 2.070039 CGGGGGCAGGGAGATAACA 61.070 63.158 0.00 0.00 0.00 2.41
2726 2762 2.829592 CGGGGGCAGGGAGATAAC 59.170 66.667 0.00 0.00 0.00 1.89
2727 2763 3.168528 GCGGGGGCAGGGAGATAA 61.169 66.667 0.00 0.00 0.00 1.75
2738 2774 4.478371 GGTTTAGGGACGCGGGGG 62.478 72.222 12.47 0.00 0.00 5.40
2739 2775 2.024590 CTAGGTTTAGGGACGCGGGG 62.025 65.000 12.47 0.00 0.00 5.73
2740 2776 1.440476 CTAGGTTTAGGGACGCGGG 59.560 63.158 12.47 0.00 0.00 6.13
2741 2777 1.440476 CCTAGGTTTAGGGACGCGG 59.560 63.158 12.47 0.00 42.44 6.46
2742 2778 1.227176 GCCTAGGTTTAGGGACGCG 60.227 63.158 11.31 3.53 45.66 6.01
2743 2779 1.227176 CGCCTAGGTTTAGGGACGC 60.227 63.158 11.31 0.00 45.66 5.19
2744 2780 0.101939 GTCGCCTAGGTTTAGGGACG 59.898 60.000 11.31 2.59 45.66 4.79
2745 2781 1.134877 GTGTCGCCTAGGTTTAGGGAC 60.135 57.143 11.31 8.26 45.66 4.46
2746 2782 1.188863 GTGTCGCCTAGGTTTAGGGA 58.811 55.000 11.31 0.00 45.66 4.20
2747 2783 0.179119 CGTGTCGCCTAGGTTTAGGG 60.179 60.000 11.31 0.00 45.66 3.53
2749 2785 0.179119 CCCGTGTCGCCTAGGTTTAG 60.179 60.000 11.31 0.00 0.00 1.85
2750 2786 1.606885 CCCCGTGTCGCCTAGGTTTA 61.607 60.000 11.31 0.00 0.00 2.01
2751 2787 2.660802 CCCGTGTCGCCTAGGTTT 59.339 61.111 11.31 0.00 0.00 3.27
2752 2788 3.387947 CCCCGTGTCGCCTAGGTT 61.388 66.667 11.31 0.00 0.00 3.50
2771 2807 4.819761 TCGGTGGCTGCAGATCGC 62.820 66.667 20.43 14.74 42.89 4.58
2772 2808 2.887568 GTCGGTGGCTGCAGATCG 60.888 66.667 20.43 10.13 0.00 3.69
2773 2809 2.512515 GGTCGGTGGCTGCAGATC 60.513 66.667 20.43 9.32 0.00 2.75
2774 2810 4.101448 GGGTCGGTGGCTGCAGAT 62.101 66.667 20.43 0.00 0.00 2.90
2776 2812 4.641645 TTGGGTCGGTGGCTGCAG 62.642 66.667 10.11 10.11 0.00 4.41
2777 2813 4.196778 TTTGGGTCGGTGGCTGCA 62.197 61.111 0.50 0.00 0.00 4.41
2778 2814 3.365265 CTTTGGGTCGGTGGCTGC 61.365 66.667 0.00 0.00 0.00 5.25
2779 2815 2.672996 CCTTTGGGTCGGTGGCTG 60.673 66.667 0.00 0.00 0.00 4.85
2780 2816 4.660938 GCCTTTGGGTCGGTGGCT 62.661 66.667 0.00 0.00 40.36 4.75
2782 2818 3.920093 GAGGCCTTTGGGTCGGTGG 62.920 68.421 6.77 0.00 43.12 4.61
2783 2819 2.359975 GAGGCCTTTGGGTCGGTG 60.360 66.667 6.77 0.00 43.12 4.94
2784 2820 3.647771 GGAGGCCTTTGGGTCGGT 61.648 66.667 6.77 0.00 43.12 4.69
2785 2821 3.330720 AGGAGGCCTTTGGGTCGG 61.331 66.667 6.77 0.00 43.12 4.79
2786 2822 2.269241 GAGGAGGCCTTTGGGTCG 59.731 66.667 6.77 0.00 43.12 4.79
2787 2823 2.677848 GGAGGAGGCCTTTGGGTC 59.322 66.667 6.77 0.00 37.52 4.46
2788 2824 2.941583 GGGAGGAGGCCTTTGGGT 60.942 66.667 6.77 0.00 31.76 4.51
2789 2825 2.615288 AGGGAGGAGGCCTTTGGG 60.615 66.667 6.77 0.00 31.76 4.12
2790 2826 3.002371 GAGGGAGGAGGCCTTTGG 58.998 66.667 6.77 0.00 31.76 3.28
2791 2827 2.245438 GACGAGGGAGGAGGCCTTTG 62.245 65.000 6.77 0.00 31.76 2.77
2792 2828 1.990614 GACGAGGGAGGAGGCCTTT 60.991 63.158 6.77 0.00 31.76 3.11
2793 2829 2.364448 GACGAGGGAGGAGGCCTT 60.364 66.667 6.77 0.00 31.76 4.35
2794 2830 4.467107 GGACGAGGGAGGAGGCCT 62.467 72.222 3.86 3.86 36.03 5.19
2795 2831 4.467107 AGGACGAGGGAGGAGGCC 62.467 72.222 0.00 0.00 0.00 5.19
2796 2832 2.835895 GAGGACGAGGGAGGAGGC 60.836 72.222 0.00 0.00 0.00 4.70
2797 2833 1.152839 GAGAGGACGAGGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
2798 2834 0.179029 GAGAGAGGACGAGGGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
2799 2835 1.637724 GGAGAGAGGACGAGGGAGGA 61.638 65.000 0.00 0.00 0.00 3.71
2800 2836 1.152839 GGAGAGAGGACGAGGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
2801 2837 1.152839 GGGAGAGAGGACGAGGGAG 60.153 68.421 0.00 0.00 0.00 4.30
2802 2838 2.691779 GGGGAGAGAGGACGAGGGA 61.692 68.421 0.00 0.00 0.00 4.20
2803 2839 1.354168 TAGGGGAGAGAGGACGAGGG 61.354 65.000 0.00 0.00 0.00 4.30
2804 2840 0.179012 GTAGGGGAGAGAGGACGAGG 60.179 65.000 0.00 0.00 0.00 4.63
2805 2841 0.179012 GGTAGGGGAGAGAGGACGAG 60.179 65.000 0.00 0.00 0.00 4.18
2806 2842 1.921294 GGTAGGGGAGAGAGGACGA 59.079 63.158 0.00 0.00 0.00 4.20
2807 2843 1.526455 CGGTAGGGGAGAGAGGACG 60.526 68.421 0.00 0.00 0.00 4.79
2808 2844 1.829096 GCGGTAGGGGAGAGAGGAC 60.829 68.421 0.00 0.00 0.00 3.85
2809 2845 2.601868 GCGGTAGGGGAGAGAGGA 59.398 66.667 0.00 0.00 0.00 3.71
2810 2846 2.522193 GGCGGTAGGGGAGAGAGG 60.522 72.222 0.00 0.00 0.00 3.69
2811 2847 2.907917 CGGCGGTAGGGGAGAGAG 60.908 72.222 0.00 0.00 0.00 3.20
2841 2877 4.473520 CACTGGCCAGGCTACGGG 62.474 72.222 35.42 10.38 34.77 5.28
2842 2878 2.735772 ATCACTGGCCAGGCTACGG 61.736 63.158 35.42 17.17 0.00 4.02
2843 2879 1.522355 CATCACTGGCCAGGCTACG 60.522 63.158 35.42 18.07 0.00 3.51
2844 2880 1.153086 CCATCACTGGCCAGGCTAC 60.153 63.158 35.42 0.00 35.23 3.58
2845 2881 3.323622 CCATCACTGGCCAGGCTA 58.676 61.111 35.42 20.67 35.23 3.93
2874 2910 2.752238 ACCACGCGAGAGGGAGAG 60.752 66.667 15.93 0.00 46.96 3.20
2875 2911 3.062466 CACCACGCGAGAGGGAGA 61.062 66.667 15.93 0.00 46.96 3.71
2876 2912 4.135153 CCACCACGCGAGAGGGAG 62.135 72.222 15.93 7.21 46.96 4.30
2886 2922 3.414700 GAAGACGCAGCCACCACG 61.415 66.667 0.00 0.00 0.00 4.94
2887 2923 3.050275 GGAAGACGCAGCCACCAC 61.050 66.667 0.00 0.00 0.00 4.16
2888 2924 4.329545 GGGAAGACGCAGCCACCA 62.330 66.667 0.00 0.00 0.00 4.17
2890 2926 4.021925 AGGGGAAGACGCAGCCAC 62.022 66.667 0.00 0.00 33.80 5.01
2891 2927 4.020617 CAGGGGAAGACGCAGCCA 62.021 66.667 0.00 0.00 33.80 4.75
2892 2928 4.785453 CCAGGGGAAGACGCAGCC 62.785 72.222 0.00 0.00 33.80 4.85
2913 2949 3.716006 CAGTTCTGTGTGCCGCCG 61.716 66.667 0.00 0.00 0.00 6.46
2914 2950 4.030452 GCAGTTCTGTGTGCCGCC 62.030 66.667 1.78 0.00 33.29 6.13
2915 2951 4.374702 CGCAGTTCTGTGTGCCGC 62.375 66.667 5.35 0.00 36.24 6.53
2916 2952 3.716006 CCGCAGTTCTGTGTGCCG 61.716 66.667 11.55 2.20 36.24 5.69
2917 2953 3.357079 CCCGCAGTTCTGTGTGCC 61.357 66.667 11.55 0.00 36.24 5.01
2918 2954 3.357079 CCCCGCAGTTCTGTGTGC 61.357 66.667 11.55 0.00 36.27 4.57
2919 2955 3.357079 GCCCCGCAGTTCTGTGTG 61.357 66.667 11.55 1.40 0.00 3.82
2920 2956 3.872603 TGCCCCGCAGTTCTGTGT 61.873 61.111 11.55 0.00 33.32 3.72
2921 2957 3.357079 GTGCCCCGCAGTTCTGTG 61.357 66.667 6.41 6.41 40.08 3.66
2922 2958 4.643387 GGTGCCCCGCAGTTCTGT 62.643 66.667 1.78 0.00 40.08 3.41
2962 2998 3.406361 GTGTCACACTCGCCGCAG 61.406 66.667 0.00 0.00 0.00 5.18
2963 2999 4.961511 GGTGTCACACTCGCCGCA 62.962 66.667 8.12 0.00 34.40 5.69
2968 3004 1.808531 TAACCCCGGTGTCACACTCG 61.809 60.000 8.12 9.70 34.40 4.18
2969 3005 0.037605 CTAACCCCGGTGTCACACTC 60.038 60.000 8.12 0.00 34.40 3.51
2970 3006 0.470456 TCTAACCCCGGTGTCACACT 60.470 55.000 8.12 0.00 34.40 3.55
2971 3007 0.037605 CTCTAACCCCGGTGTCACAC 60.038 60.000 0.00 0.00 0.00 3.82
2972 3008 1.823169 GCTCTAACCCCGGTGTCACA 61.823 60.000 5.12 0.00 0.00 3.58
2973 3009 1.079336 GCTCTAACCCCGGTGTCAC 60.079 63.158 0.00 0.00 0.00 3.67
2974 3010 1.534476 TGCTCTAACCCCGGTGTCA 60.534 57.895 0.00 0.00 0.00 3.58
2975 3011 1.218316 CTGCTCTAACCCCGGTGTC 59.782 63.158 0.00 0.00 0.00 3.67
2976 3012 2.291043 CCTGCTCTAACCCCGGTGT 61.291 63.158 0.00 0.00 0.00 4.16
2977 3013 2.584608 CCTGCTCTAACCCCGGTG 59.415 66.667 0.00 0.00 0.00 4.94
2978 3014 3.400054 GCCTGCTCTAACCCCGGT 61.400 66.667 0.00 0.00 0.00 5.28
2979 3015 4.530857 CGCCTGCTCTAACCCCGG 62.531 72.222 0.00 0.00 0.00 5.73
2982 3018 2.083835 TATCGCGCCTGCTCTAACCC 62.084 60.000 0.00 0.00 39.65 4.11
2983 3019 0.940047 GTATCGCGCCTGCTCTAACC 60.940 60.000 0.00 0.00 39.65 2.85
2984 3020 0.940047 GGTATCGCGCCTGCTCTAAC 60.940 60.000 0.00 0.00 39.65 2.34
2985 3021 1.362717 GGTATCGCGCCTGCTCTAA 59.637 57.895 0.00 0.00 39.65 2.10
2986 3022 2.904676 CGGTATCGCGCCTGCTCTA 61.905 63.158 0.00 0.00 39.65 2.43
2987 3023 4.271816 CGGTATCGCGCCTGCTCT 62.272 66.667 0.00 0.00 39.65 4.09
2997 3033 3.544167 CTCCTCTGCCGCGGTATCG 62.544 68.421 28.70 15.54 39.81 2.92
2998 3034 2.336809 CTCCTCTGCCGCGGTATC 59.663 66.667 28.70 11.04 0.00 2.24
2999 3035 3.917760 GCTCCTCTGCCGCGGTAT 61.918 66.667 28.70 0.00 0.00 2.73
3007 3043 4.106925 CCACAGGGGCTCCTCTGC 62.107 72.222 15.44 0.00 42.67 4.26
3028 3064 2.356793 GATCTGCGATCTGGGCCG 60.357 66.667 0.00 0.00 0.00 6.13
3029 3065 1.005156 GAGATCTGCGATCTGGGCC 60.005 63.158 20.67 0.00 0.00 5.80
3030 3066 0.599728 GTGAGATCTGCGATCTGGGC 60.600 60.000 20.67 10.54 0.00 5.36
3031 3067 0.033228 GGTGAGATCTGCGATCTGGG 59.967 60.000 20.67 0.00 0.00 4.45
3032 3068 0.318529 CGGTGAGATCTGCGATCTGG 60.319 60.000 20.67 7.84 0.00 3.86
3033 3069 0.383590 ACGGTGAGATCTGCGATCTG 59.616 55.000 20.67 11.62 0.00 2.90
3034 3070 1.604755 GTACGGTGAGATCTGCGATCT 59.395 52.381 17.23 17.23 0.00 2.75
3035 3071 1.335142 GGTACGGTGAGATCTGCGATC 60.335 57.143 0.00 9.60 0.00 3.69
3036 3072 0.669077 GGTACGGTGAGATCTGCGAT 59.331 55.000 0.00 0.00 0.00 4.58
3037 3073 1.381928 GGGTACGGTGAGATCTGCGA 61.382 60.000 0.00 0.00 0.00 5.10
3038 3074 1.065928 GGGTACGGTGAGATCTGCG 59.934 63.158 0.00 0.00 0.00 5.18
3039 3075 0.103208 CTGGGTACGGTGAGATCTGC 59.897 60.000 0.00 0.00 0.00 4.26
3040 3076 1.763968 TCTGGGTACGGTGAGATCTG 58.236 55.000 0.00 0.00 0.00 2.90
3041 3077 2.311463 CATCTGGGTACGGTGAGATCT 58.689 52.381 0.00 0.00 0.00 2.75
3042 3078 1.341531 CCATCTGGGTACGGTGAGATC 59.658 57.143 0.00 0.00 0.00 2.75
3043 3079 1.414158 CCATCTGGGTACGGTGAGAT 58.586 55.000 0.00 0.00 0.00 2.75
3044 3080 2.896278 CCATCTGGGTACGGTGAGA 58.104 57.895 0.00 0.00 0.00 3.27
3055 3091 2.202932 CCGTCGAAGCCCATCTGG 60.203 66.667 0.00 0.00 37.09 3.86
3056 3092 2.202932 CCCGTCGAAGCCCATCTG 60.203 66.667 0.00 0.00 0.00 2.90
3057 3093 4.162690 GCCCGTCGAAGCCCATCT 62.163 66.667 0.00 0.00 0.00 2.90
3073 3109 4.899239 CTCACCAGATCCGCCGGC 62.899 72.222 19.07 19.07 0.00 6.13
3074 3110 4.899239 GCTCACCAGATCCGCCGG 62.899 72.222 0.00 0.00 0.00 6.13
3076 3112 4.148825 ACGCTCACCAGATCCGCC 62.149 66.667 0.00 0.00 0.00 6.13
3077 3113 1.725557 TAGACGCTCACCAGATCCGC 61.726 60.000 0.00 0.00 0.00 5.54
3078 3114 0.029567 GTAGACGCTCACCAGATCCG 59.970 60.000 0.00 0.00 0.00 4.18
3079 3115 1.066303 CTGTAGACGCTCACCAGATCC 59.934 57.143 0.00 0.00 0.00 3.36
3080 3116 1.066303 CCTGTAGACGCTCACCAGATC 59.934 57.143 0.00 0.00 0.00 2.75
3081 3117 1.107114 CCTGTAGACGCTCACCAGAT 58.893 55.000 0.00 0.00 0.00 2.90
3082 3118 1.595993 GCCTGTAGACGCTCACCAGA 61.596 60.000 0.00 0.00 0.00 3.86
3083 3119 1.153745 GCCTGTAGACGCTCACCAG 60.154 63.158 0.00 0.00 0.00 4.00
3084 3120 2.970639 GCCTGTAGACGCTCACCA 59.029 61.111 0.00 0.00 0.00 4.17
3085 3121 2.202623 CGCCTGTAGACGCTCACC 60.203 66.667 0.00 0.00 0.00 4.02
3086 3122 2.202623 CCGCCTGTAGACGCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
3087 3123 3.449227 CCCGCCTGTAGACGCTCA 61.449 66.667 0.00 0.00 0.00 4.26
3088 3124 4.874977 GCCCGCCTGTAGACGCTC 62.875 72.222 0.00 0.00 0.00 5.03
3090 3126 4.530857 ATGCCCGCCTGTAGACGC 62.531 66.667 0.00 0.00 0.00 5.19
3091 3127 2.586079 CATGCCCGCCTGTAGACG 60.586 66.667 0.00 0.00 0.00 4.18
3092 3128 2.203070 CCATGCCCGCCTGTAGAC 60.203 66.667 0.00 0.00 0.00 2.59
3093 3129 2.687200 ACCATGCCCGCCTGTAGA 60.687 61.111 0.00 0.00 0.00 2.59
3094 3130 2.514592 CACCATGCCCGCCTGTAG 60.515 66.667 0.00 0.00 0.00 2.74
3095 3131 4.108299 CCACCATGCCCGCCTGTA 62.108 66.667 0.00 0.00 0.00 2.74
3124 3160 4.569180 CCATGGTGCCTAGGCCGG 62.569 72.222 30.81 18.27 41.09 6.13
3125 3161 3.797353 ACCATGGTGCCTAGGCCG 61.797 66.667 30.81 13.44 41.09 6.13
3126 3162 2.124151 CACCATGGTGCCTAGGCC 60.124 66.667 31.13 20.81 39.39 5.19
3127 3163 2.124151 CCACCATGGTGCCTAGGC 60.124 66.667 35.34 27.71 44.16 3.93
3163 3199 4.115199 AGAATCCAGGCCGCCACC 62.115 66.667 13.15 0.00 0.00 4.61
3164 3200 2.514824 GAGAATCCAGGCCGCCAC 60.515 66.667 13.15 0.00 0.00 5.01
3175 3211 0.466124 CGGGGACTGGAAGGAGAATC 59.534 60.000 0.00 0.00 39.30 2.52
3176 3212 2.609046 CGGGGACTGGAAGGAGAAT 58.391 57.895 0.00 0.00 39.30 2.40
3177 3213 4.130255 CGGGGACTGGAAGGAGAA 57.870 61.111 0.00 0.00 39.30 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.