Multiple sequence alignment - TraesCS3D01G165900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G165900 chr3D 100.000 5400 0 0 1 5400 137988236 137982837 0.000000e+00 9973.0
1 TraesCS3D01G165900 chr3D 100.000 2235 0 0 5575 7809 137982662 137980428 0.000000e+00 4128.0
2 TraesCS3D01G165900 chr3D 96.491 171 6 0 6593 6763 200383982 200383812 4.610000e-72 283.0
3 TraesCS3D01G165900 chr3D 95.152 165 7 1 6595 6758 612268612 612268448 7.770000e-65 259.0
4 TraesCS3D01G165900 chr3D 94.512 164 8 1 6597 6759 537154702 537154865 1.300000e-62 252.0
5 TraesCS3D01G165900 chr3D 90.164 122 9 2 5088 5209 137983028 137982910 1.050000e-33 156.0
6 TraesCS3D01G165900 chr3D 90.164 122 9 2 5209 5327 137983149 137983028 1.050000e-33 156.0
7 TraesCS3D01G165900 chr3B 95.259 5231 187 30 143 5345 201034267 201029070 0.000000e+00 8229.0
8 TraesCS3D01G165900 chr3B 96.718 975 26 6 5583 6555 201028813 201027843 0.000000e+00 1618.0
9 TraesCS3D01G165900 chr3B 96.818 440 11 2 6756 7193 201027747 201027309 0.000000e+00 732.0
10 TraesCS3D01G165900 chr3B 94.624 279 11 2 7535 7809 201027064 201026786 5.600000e-116 429.0
11 TraesCS3D01G165900 chr3B 91.803 122 7 1 5088 5209 201029206 201029088 4.850000e-37 167.0
12 TraesCS3D01G165900 chr3B 90.164 122 9 2 5209 5327 201029327 201029206 1.050000e-33 156.0
13 TraesCS3D01G165900 chr3B 82.090 67 12 0 541 607 389788725 389788791 3.040000e-04 58.4
14 TraesCS3D01G165900 chr3A 94.881 4962 179 32 457 5371 155833877 155828944 0.000000e+00 7686.0
15 TraesCS3D01G165900 chr3A 96.441 590 18 2 5666 6255 155828629 155828043 0.000000e+00 970.0
16 TraesCS3D01G165900 chr3A 97.065 511 10 3 6049 6555 155828043 155827534 0.000000e+00 856.0
17 TraesCS3D01G165900 chr3A 95.549 337 15 0 6756 7092 155827438 155827102 2.480000e-149 540.0
18 TraesCS3D01G165900 chr3A 86.087 460 23 12 7097 7555 155826812 155826393 2.570000e-124 457.0
19 TraesCS3D01G165900 chr3A 92.332 313 11 6 7497 7809 155826411 155826112 4.330000e-117 433.0
20 TraesCS3D01G165900 chr3A 90.164 122 9 1 5088 5209 155829106 155828988 1.050000e-33 156.0
21 TraesCS3D01G165900 chr3A 90.164 122 9 2 5209 5327 155829227 155829106 1.050000e-33 156.0
22 TraesCS3D01G165900 chr2D 95.858 169 7 0 6595 6763 419068287 419068119 2.780000e-69 274.0
23 TraesCS3D01G165900 chr7D 95.349 172 6 2 6594 6763 563440311 563440140 9.980000e-69 272.0
24 TraesCS3D01G165900 chr7D 96.319 163 6 0 6597 6759 530858135 530857973 1.290000e-67 268.0
25 TraesCS3D01G165900 chr5B 95.706 163 7 0 5728 5890 607838390 607838552 6.010000e-66 263.0
26 TraesCS3D01G165900 chr5B 94.611 167 8 1 5726 5891 554821195 554821029 2.800000e-64 257.0
27 TraesCS3D01G165900 chr5B 94.578 166 7 2 5726 5890 583291743 583291579 1.010000e-63 255.0
28 TraesCS3D01G165900 chr5D 95.706 163 6 1 5728 5890 12270501 12270340 2.160000e-65 261.0
29 TraesCS3D01G165900 chr5D 95.679 162 7 0 6596 6757 383645323 383645484 2.160000e-65 261.0
30 TraesCS3D01G165900 chr5D 95.122 41 2 0 571 611 429720690 429720650 1.820000e-06 65.8
31 TraesCS3D01G165900 chr5D 83.099 71 11 1 538 607 495631203 495631133 6.540000e-06 63.9
32 TraesCS3D01G165900 chr7B 95.092 163 8 0 5728 5890 324138549 324138711 2.800000e-64 257.0
33 TraesCS3D01G165900 chr4D 94.611 167 8 1 5725 5891 334164388 334164553 2.800000e-64 257.0
34 TraesCS3D01G165900 chr7A 94.545 165 9 0 6594 6758 3412727 3412891 1.010000e-63 255.0
35 TraesCS3D01G165900 chr7A 85.075 67 10 0 541 607 107337324 107337390 1.410000e-07 69.4
36 TraesCS3D01G165900 chr7A 88.000 50 0 4 580 623 670179263 670179214 4.000000e-03 54.7
37 TraesCS3D01G165900 chr6B 94.611 167 6 3 6594 6758 132353413 132353578 1.010000e-63 255.0
38 TraesCS3D01G165900 chrUn 94.545 165 8 1 5726 5890 141680909 141680746 3.620000e-63 254.0
39 TraesCS3D01G165900 chr5A 86.765 68 9 0 541 608 2421123 2421056 8.400000e-10 76.8
40 TraesCS3D01G165900 chr5A 96.774 31 1 0 579 609 519900444 519900474 1.400000e-02 52.8
41 TraesCS3D01G165900 chr2B 86.765 68 9 0 540 607 505502936 505503003 8.400000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G165900 chr3D 137980428 137988236 7808 True 7050.500000 9973 100.000000 1 7809 2 chr3D.!!$R3 7808
1 TraesCS3D01G165900 chr3B 201026786 201034267 7481 True 2752.000000 8229 95.854750 143 7809 4 chr3B.!!$R1 7666
2 TraesCS3D01G165900 chr3A 155826112 155833877 7765 True 1823.666667 7686 93.725833 457 7809 6 chr3A.!!$R1 7352

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.035725 TGGCATCAGTCTCTTGCAGG 60.036 55.000 6.01 0.0 38.12 4.85 F
95 96 0.106967 TGTTGCAAGGCACAGTGGTA 60.107 50.000 0.00 0.0 38.71 3.25 F
96 97 0.310854 GTTGCAAGGCACAGTGGTAC 59.689 55.000 0.00 0.0 38.71 3.34 F
98 99 0.106967 TGCAAGGCACAGTGGTACAA 60.107 50.000 1.84 0.0 34.01 2.41 F
99 100 0.310854 GCAAGGCACAGTGGTACAAC 59.689 55.000 1.84 0.0 44.16 3.32 F
378 379 0.322906 GGGGGAGAAAAGGTGCTCAG 60.323 60.000 0.00 0.0 32.83 3.35 F
385 386 0.814010 AAAAGGTGCTCAGCGTTCGT 60.814 50.000 0.00 0.0 30.71 3.85 F
2316 2363 0.530650 CGCCTCGGATTGTATGCAGT 60.531 55.000 0.00 0.0 0.00 4.40 F
2806 2853 1.134367 GGCCGGAAAATAGAAAGCCAC 59.866 52.381 5.05 0.0 38.79 5.01 F
3283 3338 1.970640 ACCTTTTCAATCTGTTGCCCC 59.029 47.619 0.00 0.0 35.26 5.80 F
5069 5147 0.107508 ATCACTCAATCACCAGCGGG 60.108 55.000 0.00 0.0 41.29 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1017 1056 1.134367 GGAATTAGGGTTTTCGCTGGC 59.866 52.381 0.00 0.00 43.01 4.85 R
1504 1551 1.671328 CCACATGCTGCATTCTCAGAG 59.329 52.381 13.38 2.25 36.19 3.35 R
1562 1609 1.942677 TGGTTGACTAACACACCACG 58.057 50.000 0.00 0.00 38.58 4.94 R
1924 1971 3.326836 TTGCATGGATGTACAACGAGA 57.673 42.857 0.00 0.00 0.00 4.04 R
2257 2304 1.672356 GCTGCACACAATCCGAGGT 60.672 57.895 0.00 0.00 0.00 3.85 R
2299 2346 3.181497 CCAAAACTGCATACAATCCGAGG 60.181 47.826 0.00 0.00 0.00 4.63 R
2549 2596 3.973267 GACTCGAGCACAGGACCGC 62.973 68.421 13.61 0.00 0.00 5.68 R
3777 3846 0.033796 AGCCACCCAGTCCATGAATG 60.034 55.000 0.00 0.00 0.00 2.67 R
4414 4483 0.319083 TCGATTACGCACCCAAGTGT 59.681 50.000 0.00 0.00 46.35 3.55 R
5379 5457 0.330941 TGCCCAAGATGCACCATACA 59.669 50.000 0.00 0.00 32.85 2.29 R
6990 7352 0.255318 CTCCTGCCTTCTTCCAGCAT 59.745 55.000 0.00 0.00 35.64 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.105128 GGAGGACATGACGAGCGG 59.895 66.667 0.00 0.00 0.00 5.52
18 19 2.583593 GAGGACATGACGAGCGGC 60.584 66.667 0.00 0.00 0.00 6.53
19 20 3.069980 GAGGACATGACGAGCGGCT 62.070 63.158 0.00 0.00 0.00 5.52
20 21 1.725557 GAGGACATGACGAGCGGCTA 61.726 60.000 0.60 0.00 0.00 3.93
21 22 1.299468 GGACATGACGAGCGGCTAG 60.299 63.158 0.60 5.29 0.00 3.42
22 23 1.299468 GACATGACGAGCGGCTAGG 60.299 63.158 14.60 6.99 0.00 3.02
23 24 2.659897 CATGACGAGCGGCTAGGC 60.660 66.667 14.60 12.09 0.00 3.93
24 25 4.271816 ATGACGAGCGGCTAGGCG 62.272 66.667 32.23 32.23 38.18 5.52
58 59 3.397439 AGGCGCTGGCATCAGTCT 61.397 61.111 7.64 0.00 42.78 3.24
59 60 2.894387 GGCGCTGGCATCAGTCTC 60.894 66.667 7.64 0.00 42.78 3.36
60 61 2.186384 GCGCTGGCATCAGTCTCT 59.814 61.111 0.00 0.00 42.78 3.10
61 62 1.449246 GCGCTGGCATCAGTCTCTT 60.449 57.895 0.00 0.00 42.78 2.85
62 63 1.703438 GCGCTGGCATCAGTCTCTTG 61.703 60.000 0.00 0.00 42.78 3.02
63 64 1.703438 CGCTGGCATCAGTCTCTTGC 61.703 60.000 0.00 0.00 42.78 4.01
64 65 0.675837 GCTGGCATCAGTCTCTTGCA 60.676 55.000 6.01 0.00 42.78 4.08
65 66 1.370609 CTGGCATCAGTCTCTTGCAG 58.629 55.000 6.01 0.00 38.12 4.41
66 67 0.035725 TGGCATCAGTCTCTTGCAGG 60.036 55.000 6.01 0.00 38.12 4.85
67 68 0.747283 GGCATCAGTCTCTTGCAGGG 60.747 60.000 0.00 0.00 38.12 4.45
68 69 0.747283 GCATCAGTCTCTTGCAGGGG 60.747 60.000 0.00 0.00 36.40 4.79
69 70 0.747283 CATCAGTCTCTTGCAGGGGC 60.747 60.000 0.00 0.00 41.68 5.80
79 80 2.521708 GCAGGGGCAACAGGTGTT 60.522 61.111 0.00 0.00 40.72 3.32
87 88 4.353325 AACAGGTGTTGCAAGGCA 57.647 50.000 0.00 0.00 36.80 4.75
88 89 1.815866 AACAGGTGTTGCAAGGCAC 59.184 52.632 10.85 10.85 38.71 5.01
89 90 0.969917 AACAGGTGTTGCAAGGCACA 60.970 50.000 18.60 3.85 38.71 4.57
90 91 1.361271 CAGGTGTTGCAAGGCACAG 59.639 57.895 18.60 9.13 38.71 3.66
91 92 1.076777 AGGTGTTGCAAGGCACAGT 60.077 52.632 18.60 5.74 38.71 3.55
92 93 1.066257 GGTGTTGCAAGGCACAGTG 59.934 57.895 18.60 0.00 38.71 3.66
93 94 1.066257 GTGTTGCAAGGCACAGTGG 59.934 57.895 13.66 0.00 38.71 4.00
94 95 1.379710 TGTTGCAAGGCACAGTGGT 60.380 52.632 0.00 0.00 38.71 4.16
95 96 0.106967 TGTTGCAAGGCACAGTGGTA 60.107 50.000 0.00 0.00 38.71 3.25
96 97 0.310854 GTTGCAAGGCACAGTGGTAC 59.689 55.000 0.00 0.00 38.71 3.34
97 98 0.106967 TTGCAAGGCACAGTGGTACA 60.107 50.000 1.84 0.00 38.71 2.90
98 99 0.106967 TGCAAGGCACAGTGGTACAA 60.107 50.000 1.84 0.00 34.01 2.41
99 100 0.310854 GCAAGGCACAGTGGTACAAC 59.689 55.000 1.84 0.00 44.16 3.32
100 101 0.586319 CAAGGCACAGTGGTACAACG 59.414 55.000 1.84 0.00 44.16 4.10
101 102 0.534203 AAGGCACAGTGGTACAACGG 60.534 55.000 1.84 0.00 44.16 4.44
102 103 1.070105 GGCACAGTGGTACAACGGA 59.930 57.895 7.60 0.00 44.16 4.69
103 104 1.226030 GGCACAGTGGTACAACGGAC 61.226 60.000 7.60 0.00 44.16 4.79
104 105 1.554042 GCACAGTGGTACAACGGACG 61.554 60.000 7.60 0.00 44.16 4.79
105 106 1.300388 ACAGTGGTACAACGGACGC 60.300 57.895 7.60 0.00 44.16 5.19
106 107 1.300311 CAGTGGTACAACGGACGCA 60.300 57.895 0.00 0.00 44.16 5.24
107 108 0.876777 CAGTGGTACAACGGACGCAA 60.877 55.000 0.00 0.00 44.16 4.85
108 109 0.599204 AGTGGTACAACGGACGCAAG 60.599 55.000 0.00 0.00 44.16 4.01
109 110 1.957186 TGGTACAACGGACGCAAGC 60.957 57.895 0.00 0.00 36.04 4.01
110 111 2.468532 GTACAACGGACGCAAGCG 59.531 61.111 13.50 13.50 46.03 4.68
120 121 2.741985 CGCAAGCGTGTCCATCCA 60.742 61.111 6.25 0.00 34.35 3.41
121 122 2.108514 CGCAAGCGTGTCCATCCAT 61.109 57.895 6.25 0.00 34.35 3.41
122 123 1.430632 GCAAGCGTGTCCATCCATG 59.569 57.895 0.59 0.00 0.00 3.66
131 132 3.831883 CCATCCATGGCAGTTCGG 58.168 61.111 6.96 0.00 41.75 4.30
132 133 2.484062 CCATCCATGGCAGTTCGGC 61.484 63.158 6.96 0.00 41.75 5.54
148 149 4.395583 GCAACGCCTGTGCTGCTC 62.396 66.667 0.00 0.00 36.16 4.26
149 150 3.730761 CAACGCCTGTGCTGCTCC 61.731 66.667 0.00 0.00 34.43 4.70
150 151 3.946201 AACGCCTGTGCTGCTCCT 61.946 61.111 0.00 0.00 34.43 3.69
151 152 3.890936 AACGCCTGTGCTGCTCCTC 62.891 63.158 0.00 0.00 34.43 3.71
153 154 4.792804 GCCTGTGCTGCTCCTCCC 62.793 72.222 0.00 0.00 33.53 4.30
154 155 4.106925 CCTGTGCTGCTCCTCCCC 62.107 72.222 0.00 0.00 0.00 4.81
155 156 4.106925 CTGTGCTGCTCCTCCCCC 62.107 72.222 0.00 0.00 0.00 5.40
156 157 4.664267 TGTGCTGCTCCTCCCCCT 62.664 66.667 0.00 0.00 0.00 4.79
157 158 3.791586 GTGCTGCTCCTCCCCCTC 61.792 72.222 0.00 0.00 0.00 4.30
177 178 2.105128 CGCTCAGCCTCCTTACGG 59.895 66.667 0.00 0.00 0.00 4.02
179 180 1.142097 GCTCAGCCTCCTTACGGAC 59.858 63.158 0.00 0.00 34.92 4.79
196 197 3.080121 CCCTTCAGCTCCGCCTCT 61.080 66.667 0.00 0.00 0.00 3.69
201 202 1.532604 TTCAGCTCCGCCTCTTTCGA 61.533 55.000 0.00 0.00 0.00 3.71
213 214 3.757248 CTTTCGAGGATGGCGGGGG 62.757 68.421 0.00 0.00 0.00 5.40
235 236 2.438434 GATGGGTCCGTTGGCCAG 60.438 66.667 5.11 0.00 0.00 4.85
236 237 3.256960 ATGGGTCCGTTGGCCAGT 61.257 61.111 5.11 0.00 0.00 4.00
237 238 3.567579 ATGGGTCCGTTGGCCAGTG 62.568 63.158 5.11 1.77 0.00 3.66
238 239 4.265056 GGGTCCGTTGGCCAGTGT 62.265 66.667 5.11 0.00 0.00 3.55
246 247 4.662961 TGGCCAGTGTCGCGTCAG 62.663 66.667 0.00 0.00 0.00 3.51
259 260 3.838271 GTCAGGAGCGCCATCCGA 61.838 66.667 9.88 4.99 44.65 4.55
262 263 4.537433 AGGAGCGCCATCCGAAGC 62.537 66.667 9.88 0.00 44.65 3.86
269 270 1.971167 GCCATCCGAAGCCACAACA 60.971 57.895 0.00 0.00 0.00 3.33
298 299 1.595993 CGACGACCACCATGAGGACT 61.596 60.000 10.65 0.00 38.69 3.85
311 312 1.630369 TGAGGACTTCAAGGTCATGGG 59.370 52.381 0.00 0.00 37.91 4.00
315 316 2.040412 GGACTTCAAGGTCATGGGACTT 59.960 50.000 0.00 0.00 43.77 3.01
320 321 2.162681 CAAGGTCATGGGACTTGGTTC 58.837 52.381 13.62 0.00 43.77 3.62
321 322 1.444933 AGGTCATGGGACTTGGTTCA 58.555 50.000 0.00 0.00 43.77 3.18
332 333 4.006319 GGACTTGGTTCAGGAATGAGAAG 58.994 47.826 0.00 0.00 0.00 2.85
334 335 4.904241 ACTTGGTTCAGGAATGAGAAGAG 58.096 43.478 0.00 0.00 0.00 2.85
338 339 3.186119 GTTCAGGAATGAGAAGAGCGAG 58.814 50.000 0.00 0.00 0.00 5.03
342 343 1.482593 GGAATGAGAAGAGCGAGGGAA 59.517 52.381 0.00 0.00 0.00 3.97
348 349 3.071023 TGAGAAGAGCGAGGGAAAAAGAA 59.929 43.478 0.00 0.00 0.00 2.52
359 360 4.483950 AGGGAAAAAGAAAGAAGGGGAAG 58.516 43.478 0.00 0.00 0.00 3.46
378 379 0.322906 GGGGGAGAAAAGGTGCTCAG 60.323 60.000 0.00 0.00 32.83 3.35
385 386 0.814010 AAAAGGTGCTCAGCGTTCGT 60.814 50.000 0.00 0.00 30.71 3.85
386 387 1.498865 AAAGGTGCTCAGCGTTCGTG 61.499 55.000 0.00 0.00 0.00 4.35
408 409 1.403780 GGGTCGTGAATGTAGCGAACT 60.404 52.381 0.00 0.00 41.49 3.01
415 416 1.929836 GAATGTAGCGAACTCCTGCAG 59.070 52.381 6.78 6.78 0.00 4.41
423 424 2.413371 GCGAACTCCTGCAGAAAATGAC 60.413 50.000 17.39 0.00 0.00 3.06
444 445 2.200337 GGCGACCACCCTTGCTTTT 61.200 57.895 0.00 0.00 0.00 2.27
446 447 0.955905 GCGACCACCCTTGCTTTTAA 59.044 50.000 0.00 0.00 0.00 1.52
451 452 2.560981 ACCACCCTTGCTTTTAAATCCG 59.439 45.455 0.00 0.00 0.00 4.18
452 453 2.606108 CACCCTTGCTTTTAAATCCGC 58.394 47.619 0.00 0.00 0.00 5.54
469 470 4.175489 CGCTGACCGTCCGACGAT 62.175 66.667 22.40 4.59 46.05 3.73
470 471 2.579787 GCTGACCGTCCGACGATG 60.580 66.667 22.40 8.95 46.05 3.84
472 473 1.062685 CTGACCGTCCGACGATGAG 59.937 63.158 22.40 4.71 46.05 2.90
478 479 1.167155 CGTCCGACGATGAGGGAGAT 61.167 60.000 16.03 0.00 46.05 2.75
499 500 6.555315 AGATGTTCGGAGATTGCAAAATAAC 58.445 36.000 1.71 3.60 35.04 1.89
504 505 4.394920 TCGGAGATTGCAAAATAACTGACC 59.605 41.667 1.71 0.00 0.00 4.02
506 507 5.106157 CGGAGATTGCAAAATAACTGACCTT 60.106 40.000 1.71 0.00 0.00 3.50
510 511 6.434028 AGATTGCAAAATAACTGACCTTAGCA 59.566 34.615 1.71 0.00 0.00 3.49
527 528 7.054751 ACCTTAGCAAGATAACATTTCCCTAC 58.945 38.462 0.00 0.00 0.00 3.18
560 561 7.843490 TTATTACTTCCTCTGTCCGAAATTG 57.157 36.000 0.00 0.00 0.00 2.32
564 565 3.973206 TCCTCTGTCCGAAATTGCTTA 57.027 42.857 0.00 0.00 0.00 3.09
566 567 4.442706 TCCTCTGTCCGAAATTGCTTATC 58.557 43.478 0.00 0.00 0.00 1.75
567 568 4.081142 TCCTCTGTCCGAAATTGCTTATCA 60.081 41.667 0.00 0.00 0.00 2.15
694 723 3.706594 AGATCTACTCGGCCAAAATCTCA 59.293 43.478 2.24 0.00 0.00 3.27
725 755 2.278330 CCTCCCCAAACCAAGCAGC 61.278 63.158 0.00 0.00 0.00 5.25
726 756 1.531365 CTCCCCAAACCAAGCAGCA 60.531 57.895 0.00 0.00 0.00 4.41
869 907 2.671963 GGTGCCGAGGTGGGTTTC 60.672 66.667 0.00 0.00 38.63 2.78
938 977 4.325501 GGTTTCTCCTCCTCCTAGAAGAGA 60.326 50.000 0.00 0.00 35.82 3.10
1017 1056 2.743636 TTGCCCTCTACGTTTCTCAG 57.256 50.000 0.00 0.00 0.00 3.35
1020 1059 0.895530 CCCTCTACGTTTCTCAGCCA 59.104 55.000 0.00 0.00 0.00 4.75
1100 1145 3.090790 GGGCGTATTTGGGGTTTTTCTA 58.909 45.455 0.00 0.00 0.00 2.10
1103 1148 4.171005 GCGTATTTGGGGTTTTTCTAAGC 58.829 43.478 0.00 0.00 0.00 3.09
1159 1204 2.202851 CTAGTGCTGGCGGCTCAG 60.203 66.667 20.66 11.76 42.39 3.35
1276 1322 1.790755 GGTTCATTTTGGGGTTTCGC 58.209 50.000 0.00 0.00 0.00 4.70
1504 1551 4.167268 CACTCTAGGTTACGCTGTTCTTC 58.833 47.826 0.00 0.00 0.00 2.87
1562 1609 9.507280 CAGACCATGAAACATGTTAATTATGTC 57.493 33.333 12.39 13.66 37.77 3.06
1602 1649 5.705905 ACCATTAAGTTGTCTAAGTCCTTGC 59.294 40.000 0.00 0.00 0.00 4.01
1638 1685 8.801299 TCTGTCATTTATGGAACTTTATTTGCA 58.199 29.630 0.00 0.00 0.00 4.08
1661 1708 6.860023 GCAAATATTCATATGTGGCTCTGTTC 59.140 38.462 1.90 0.00 30.29 3.18
1692 1739 7.484641 CCACGTTATCAATATCTTGTTGTTTGG 59.515 37.037 0.00 0.00 33.87 3.28
1747 1794 2.161855 TGAATGACCATCCTTGTGTGC 58.838 47.619 0.00 0.00 0.00 4.57
2257 2304 3.935828 GCTTAAGGTGTTTTTGCAAACCA 59.064 39.130 18.00 12.44 41.60 3.67
2285 2332 1.900498 GTGTGCAGCTTTGGAGGCT 60.900 57.895 0.00 0.00 41.07 4.58
2316 2363 0.530650 CGCCTCGGATTGTATGCAGT 60.531 55.000 0.00 0.00 0.00 4.40
2330 2377 5.133941 TGTATGCAGTTTTGGAGGTGTTTA 58.866 37.500 0.00 0.00 0.00 2.01
2549 2596 2.035704 TGTGCTTACAATGGTTTGCAGG 59.964 45.455 0.77 0.00 35.66 4.85
2680 2727 4.692155 CGTATAAAAGGAGGAAACGTGGTT 59.308 41.667 0.00 0.00 0.00 3.67
2770 2817 2.802247 CCGGTATATATGCGCCATGATG 59.198 50.000 4.18 0.00 0.00 3.07
2805 2852 1.272203 TGGCCGGAAAATAGAAAGCCA 60.272 47.619 5.05 0.00 46.16 4.75
2806 2853 1.134367 GGCCGGAAAATAGAAAGCCAC 59.866 52.381 5.05 0.00 38.79 5.01
2813 2860 4.022676 GGAAAATAGAAAGCCACCGTTGAA 60.023 41.667 0.00 0.00 0.00 2.69
2850 2897 2.438763 TGGGGTTTCGGTTGAGAAGTTA 59.561 45.455 0.00 0.00 0.00 2.24
3215 3270 4.058817 CTCAGAACCTTGTCAGTTACACC 58.941 47.826 0.00 0.00 38.00 4.16
3278 3333 9.574516 AGTTGTCTTATACCTTTTCAATCTGTT 57.425 29.630 0.00 0.00 0.00 3.16
3279 3334 9.612620 GTTGTCTTATACCTTTTCAATCTGTTG 57.387 33.333 0.00 0.00 36.65 3.33
3280 3335 7.816640 TGTCTTATACCTTTTCAATCTGTTGC 58.183 34.615 0.00 0.00 35.26 4.17
3281 3336 7.094377 TGTCTTATACCTTTTCAATCTGTTGCC 60.094 37.037 0.00 0.00 35.26 4.52
3282 3337 6.377146 TCTTATACCTTTTCAATCTGTTGCCC 59.623 38.462 0.00 0.00 35.26 5.36
3283 3338 1.970640 ACCTTTTCAATCTGTTGCCCC 59.029 47.619 0.00 0.00 35.26 5.80
3284 3339 2.250924 CCTTTTCAATCTGTTGCCCCT 58.749 47.619 0.00 0.00 35.26 4.79
3285 3340 3.181423 ACCTTTTCAATCTGTTGCCCCTA 60.181 43.478 0.00 0.00 35.26 3.53
3286 3341 4.026052 CCTTTTCAATCTGTTGCCCCTAT 58.974 43.478 0.00 0.00 35.26 2.57
3287 3342 4.467438 CCTTTTCAATCTGTTGCCCCTATT 59.533 41.667 0.00 0.00 35.26 1.73
3288 3343 5.046376 CCTTTTCAATCTGTTGCCCCTATTT 60.046 40.000 0.00 0.00 35.26 1.40
3289 3344 6.154363 CCTTTTCAATCTGTTGCCCCTATTTA 59.846 38.462 0.00 0.00 35.26 1.40
3290 3345 7.147672 CCTTTTCAATCTGTTGCCCCTATTTAT 60.148 37.037 0.00 0.00 35.26 1.40
3291 3346 8.830915 TTTTCAATCTGTTGCCCCTATTTATA 57.169 30.769 0.00 0.00 35.26 0.98
3456 3525 3.303990 GCTCAAGAAACGTCATTCTGCAA 60.304 43.478 3.33 0.00 39.54 4.08
3777 3846 4.627035 GGCAACATTGATAAGAAAAGTGGC 59.373 41.667 0.00 0.00 0.00 5.01
3810 3879 2.289010 GGGTGGCTCAATTGGAAAGTTG 60.289 50.000 5.42 0.00 0.00 3.16
3864 3933 7.156876 TGAAAACATAAGGTGCCATTCTAAG 57.843 36.000 0.00 0.00 0.00 2.18
3914 3983 5.109903 ACTCGACCATATGAGCACTTAAAC 58.890 41.667 3.65 0.00 35.61 2.01
3917 3986 4.034048 CGACCATATGAGCACTTAAACACC 59.966 45.833 3.65 0.00 0.00 4.16
4336 4405 4.327087 CAGTGTTTGAGTTTTTGCCTGTTC 59.673 41.667 0.00 0.00 0.00 3.18
4352 4421 5.007332 TGCCTGTTCTAGTTTTCTTTTCGTC 59.993 40.000 0.00 0.00 0.00 4.20
4414 4483 7.715657 ACTTTCTTCTAATGCAAAATGACACA 58.284 30.769 0.00 0.00 0.00 3.72
4626 4703 8.225777 GCTATACACTACGCAAAACTTTTAAGT 58.774 33.333 0.00 0.00 42.04 2.24
4682 4759 2.378038 TCCCTATGAAAGGCACATTGC 58.622 47.619 0.00 0.00 45.03 3.56
4914 4992 5.476945 GGATTCAAACACACCTGGAAGTATT 59.523 40.000 0.00 0.00 0.00 1.89
5069 5147 0.107508 ATCACTCAATCACCAGCGGG 60.108 55.000 0.00 0.00 41.29 6.13
5277 5355 6.518395 GCGGTACAATGCAATATTTACGTATG 59.482 38.462 0.00 0.00 0.00 2.39
5388 5466 9.494271 TCTGAAAATTAGATATCTGTATGGTGC 57.506 33.333 15.79 1.36 0.00 5.01
5389 5467 9.276590 CTGAAAATTAGATATCTGTATGGTGCA 57.723 33.333 15.79 5.23 0.00 4.57
5390 5468 9.797642 TGAAAATTAGATATCTGTATGGTGCAT 57.202 29.630 15.79 0.00 0.00 3.96
5394 5472 9.445878 AATTAGATATCTGTATGGTGCATCTTG 57.554 33.333 15.79 0.00 0.00 3.02
5395 5473 5.802465 AGATATCTGTATGGTGCATCTTGG 58.198 41.667 3.89 0.00 0.00 3.61
5396 5474 2.715749 TCTGTATGGTGCATCTTGGG 57.284 50.000 0.00 0.00 0.00 4.12
5397 5475 1.027357 CTGTATGGTGCATCTTGGGC 58.973 55.000 0.00 0.00 0.00 5.36
5398 5476 0.330941 TGTATGGTGCATCTTGGGCA 59.669 50.000 0.00 0.00 39.32 5.36
5399 5477 1.063792 TGTATGGTGCATCTTGGGCAT 60.064 47.619 0.00 0.00 44.11 4.40
5638 5735 2.894765 TGATCTACAAGTGACGGACCAA 59.105 45.455 0.00 0.00 0.00 3.67
5648 5745 3.451178 AGTGACGGACCAATAGCATTACT 59.549 43.478 0.00 0.00 0.00 2.24
5650 5747 5.128171 AGTGACGGACCAATAGCATTACTAA 59.872 40.000 0.00 0.00 33.57 2.24
5651 5748 5.989777 GTGACGGACCAATAGCATTACTAAT 59.010 40.000 0.00 0.00 33.57 1.73
5693 5791 5.221048 GCGCCAGTAATCTATTGGTTTCAAT 60.221 40.000 0.00 0.00 44.87 2.57
5736 5835 4.846168 AGACTTCCAAATTACTCCCTCC 57.154 45.455 0.00 0.00 0.00 4.30
5778 5877 5.952347 TTTAGAGATTCCAGTAAGGGACC 57.048 43.478 0.00 0.00 36.46 4.46
5914 6013 5.048013 CGTGATAGCATGGTTAGAGGATACA 60.048 44.000 1.12 0.00 41.41 2.29
5960 6059 8.573035 GTTCCTGTGTTTATGAGGTTTAATCAA 58.427 33.333 0.00 0.00 0.00 2.57
5997 6096 1.742761 ACATGCTTGATTCTCCCGTG 58.257 50.000 6.60 0.00 0.00 4.94
6019 6118 6.202762 CGTGGTTGAATGCTTTATCTATGCTA 59.797 38.462 0.00 0.00 0.00 3.49
6145 6449 9.911788 ATCATTGATCAGTTTTACATACTTCCT 57.088 29.630 0.00 0.00 0.00 3.36
6171 6475 7.584122 TGTCTACTGATACCAAGATACCTTC 57.416 40.000 0.00 0.00 0.00 3.46
6174 6478 8.697292 GTCTACTGATACCAAGATACCTTCTTT 58.303 37.037 0.00 0.00 42.15 2.52
6175 6479 8.915036 TCTACTGATACCAAGATACCTTCTTTC 58.085 37.037 0.00 0.00 42.15 2.62
6176 6480 7.741554 ACTGATACCAAGATACCTTCTTTCT 57.258 36.000 0.00 0.00 42.15 2.52
6177 6481 7.787028 ACTGATACCAAGATACCTTCTTTCTC 58.213 38.462 0.00 0.00 42.15 2.87
6178 6482 7.621683 ACTGATACCAAGATACCTTCTTTCTCT 59.378 37.037 0.00 0.00 42.15 3.10
6179 6483 8.012957 TGATACCAAGATACCTTCTTTCTCTC 57.987 38.462 0.00 0.00 42.15 3.20
6402 6708 0.764890 CAACTCCTGGAAGTCACCCA 59.235 55.000 0.00 0.00 0.00 4.51
6489 6795 0.905357 CTCCTGGAAGTCACCCGATT 59.095 55.000 0.00 0.00 0.00 3.34
6596 6958 5.932303 TGCAAAGTTCTTAACGCTAGATTCT 59.068 36.000 0.00 0.00 36.23 2.40
6597 6959 7.094631 TGCAAAGTTCTTAACGCTAGATTCTA 58.905 34.615 0.00 0.00 36.23 2.10
6598 6960 7.063074 TGCAAAGTTCTTAACGCTAGATTCTAC 59.937 37.037 0.00 0.00 36.23 2.59
6599 6961 7.275999 GCAAAGTTCTTAACGCTAGATTCTACT 59.724 37.037 0.00 0.00 36.23 2.57
6600 6962 8.800031 CAAAGTTCTTAACGCTAGATTCTACTC 58.200 37.037 0.00 0.00 36.23 2.59
6601 6963 7.030075 AGTTCTTAACGCTAGATTCTACTCC 57.970 40.000 0.00 0.00 36.23 3.85
6602 6964 6.039605 AGTTCTTAACGCTAGATTCTACTCCC 59.960 42.308 0.00 0.00 36.23 4.30
6603 6965 5.692928 TCTTAACGCTAGATTCTACTCCCT 58.307 41.667 0.00 0.00 0.00 4.20
6604 6966 5.764192 TCTTAACGCTAGATTCTACTCCCTC 59.236 44.000 0.00 0.00 0.00 4.30
6605 6967 2.866351 ACGCTAGATTCTACTCCCTCC 58.134 52.381 0.00 0.00 0.00 4.30
6606 6968 1.807742 CGCTAGATTCTACTCCCTCCG 59.192 57.143 0.00 0.00 0.00 4.63
6607 6969 2.811136 CGCTAGATTCTACTCCCTCCGT 60.811 54.545 0.00 0.00 0.00 4.69
6608 6970 3.224269 GCTAGATTCTACTCCCTCCGTT 58.776 50.000 0.00 0.00 0.00 4.44
6609 6971 3.253921 GCTAGATTCTACTCCCTCCGTTC 59.746 52.174 0.00 0.00 0.00 3.95
6610 6972 2.668625 AGATTCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
6611 6973 2.245287 AGATTCTACTCCCTCCGTTCCT 59.755 50.000 0.00 0.00 0.00 3.36
6612 6974 3.462579 AGATTCTACTCCCTCCGTTCCTA 59.537 47.826 0.00 0.00 0.00 2.94
6613 6975 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
6614 6976 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
6615 6977 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
6616 6978 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
6617 6979 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
6618 6980 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
6619 6981 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
6620 6982 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
6621 6983 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
6622 6984 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
6623 6985 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
6624 6986 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
6625 6987 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
6626 6988 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
6627 6989 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
6630 6992 9.694137 CCGTTCCTAAATATAAGTCTTTCTAGG 57.306 37.037 0.00 0.00 0.00 3.02
6653 7015 8.433421 AGGATTTCAATACAAACTACATACGG 57.567 34.615 0.00 0.00 0.00 4.02
6654 7016 8.262227 AGGATTTCAATACAAACTACATACGGA 58.738 33.333 0.00 0.00 0.00 4.69
6655 7017 9.052759 GGATTTCAATACAAACTACATACGGAT 57.947 33.333 0.00 0.00 0.00 4.18
6656 7018 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
6658 7020 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
6687 7049 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
6688 7050 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
6689 7051 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
6690 7052 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
6691 7053 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
6692 7054 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
6693 7055 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
6694 7056 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
6695 7057 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
6696 7058 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
6697 7059 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
6698 7060 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
6699 7061 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
6700 7062 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
6701 7063 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6702 7064 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6703 7065 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6704 7066 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6705 7067 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6706 7068 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6707 7069 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6708 7070 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6709 7071 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6710 7072 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
6711 7073 5.109210 TCATTTTGCTCCGTATGTAGTCTG 58.891 41.667 0.00 0.00 0.00 3.51
6712 7074 4.530710 TTTTGCTCCGTATGTAGTCTGT 57.469 40.909 0.00 0.00 0.00 3.41
6713 7075 5.648178 TTTTGCTCCGTATGTAGTCTGTA 57.352 39.130 0.00 0.00 0.00 2.74
6714 7076 4.895224 TTGCTCCGTATGTAGTCTGTAG 57.105 45.455 0.00 0.00 0.00 2.74
6715 7077 3.882444 TGCTCCGTATGTAGTCTGTAGT 58.118 45.455 0.00 0.00 0.00 2.73
6716 7078 3.626217 TGCTCCGTATGTAGTCTGTAGTG 59.374 47.826 0.00 0.00 0.00 2.74
6717 7079 3.875727 GCTCCGTATGTAGTCTGTAGTGA 59.124 47.826 0.00 0.00 0.00 3.41
6718 7080 4.334759 GCTCCGTATGTAGTCTGTAGTGAA 59.665 45.833 0.00 0.00 0.00 3.18
6719 7081 5.163683 GCTCCGTATGTAGTCTGTAGTGAAA 60.164 44.000 0.00 0.00 0.00 2.69
6720 7082 6.459848 GCTCCGTATGTAGTCTGTAGTGAAAT 60.460 42.308 0.00 0.00 0.00 2.17
6721 7083 7.024340 TCCGTATGTAGTCTGTAGTGAAATC 57.976 40.000 0.00 0.00 0.00 2.17
6722 7084 6.827251 TCCGTATGTAGTCTGTAGTGAAATCT 59.173 38.462 0.00 0.00 0.00 2.40
6723 7085 7.338703 TCCGTATGTAGTCTGTAGTGAAATCTT 59.661 37.037 0.00 0.00 0.00 2.40
6724 7086 7.974501 CCGTATGTAGTCTGTAGTGAAATCTTT 59.025 37.037 0.00 0.00 0.00 2.52
6725 7087 9.999009 CGTATGTAGTCTGTAGTGAAATCTTTA 57.001 33.333 0.00 0.00 0.00 1.85
6751 7113 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
6752 7114 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
6753 7115 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
6754 7116 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
6867 7229 4.866508 AGTCCTTTTGTGTATCTCGTCA 57.133 40.909 0.00 0.00 0.00 4.35
6869 7231 5.230942 AGTCCTTTTGTGTATCTCGTCAAG 58.769 41.667 0.00 0.00 0.00 3.02
6990 7352 5.097742 TCTGTTTCACTTCTGAACCTTCA 57.902 39.130 0.00 0.00 36.06 3.02
7057 7419 5.121611 TGCTTGTAGGAAACATGATGTAACG 59.878 40.000 0.00 0.00 38.10 3.18
7162 7809 0.251564 CTGGTGGTTACATGGGCCAA 60.252 55.000 11.89 0.00 33.66 4.52
7164 7811 1.203237 TGGTGGTTACATGGGCCAATT 60.203 47.619 11.89 2.20 33.66 2.32
7222 7869 2.101415 AGCAGTGGAAACTCAAAAAGGC 59.899 45.455 0.00 0.00 0.00 4.35
7223 7870 2.101415 GCAGTGGAAACTCAAAAAGGCT 59.899 45.455 0.00 0.00 0.00 4.58
7224 7871 3.709987 CAGTGGAAACTCAAAAAGGCTG 58.290 45.455 0.00 0.00 0.00 4.85
7225 7872 3.381272 CAGTGGAAACTCAAAAAGGCTGA 59.619 43.478 0.00 0.00 0.00 4.26
7226 7873 3.633986 AGTGGAAACTCAAAAAGGCTGAG 59.366 43.478 0.00 0.00 44.90 3.35
7227 7874 2.958355 TGGAAACTCAAAAAGGCTGAGG 59.042 45.455 6.46 0.00 43.88 3.86
7228 7875 2.288457 GGAAACTCAAAAAGGCTGAGGC 60.288 50.000 0.00 0.00 43.88 4.70
7229 7876 2.071778 AACTCAAAAAGGCTGAGGCA 57.928 45.000 9.23 0.00 43.88 4.75
7230 7877 2.071778 ACTCAAAAAGGCTGAGGCAA 57.928 45.000 9.23 0.00 43.88 4.52
7231 7878 2.387757 ACTCAAAAAGGCTGAGGCAAA 58.612 42.857 9.23 0.00 43.88 3.68
7232 7879 2.363359 ACTCAAAAAGGCTGAGGCAAAG 59.637 45.455 9.23 0.00 43.88 2.77
7233 7880 2.363359 CTCAAAAAGGCTGAGGCAAAGT 59.637 45.455 9.23 0.00 40.87 2.66
7234 7881 3.561143 TCAAAAAGGCTGAGGCAAAGTA 58.439 40.909 9.23 0.00 40.87 2.24
7235 7882 4.151883 TCAAAAAGGCTGAGGCAAAGTAT 58.848 39.130 9.23 0.00 40.87 2.12
7236 7883 5.321102 TCAAAAAGGCTGAGGCAAAGTATA 58.679 37.500 9.23 0.00 40.87 1.47
7237 7884 5.772672 TCAAAAAGGCTGAGGCAAAGTATAA 59.227 36.000 9.23 0.00 40.87 0.98
7238 7885 6.266558 TCAAAAAGGCTGAGGCAAAGTATAAA 59.733 34.615 9.23 0.00 40.87 1.40
7239 7886 6.664428 AAAAGGCTGAGGCAAAGTATAAAA 57.336 33.333 9.23 0.00 40.87 1.52
7240 7887 6.664428 AAAGGCTGAGGCAAAGTATAAAAA 57.336 33.333 9.23 0.00 40.87 1.94
7241 7888 5.644977 AGGCTGAGGCAAAGTATAAAAAC 57.355 39.130 9.23 0.00 40.87 2.43
7242 7889 5.076873 AGGCTGAGGCAAAGTATAAAAACA 58.923 37.500 9.23 0.00 40.87 2.83
7243 7890 5.183904 AGGCTGAGGCAAAGTATAAAAACAG 59.816 40.000 9.23 0.00 40.87 3.16
7244 7891 5.048013 GGCTGAGGCAAAGTATAAAAACAGT 60.048 40.000 0.00 0.00 40.87 3.55
7245 7892 6.447162 GCTGAGGCAAAGTATAAAAACAGTT 58.553 36.000 0.00 0.00 38.54 3.16
7246 7893 6.582672 GCTGAGGCAAAGTATAAAAACAGTTC 59.417 38.462 0.00 0.00 38.54 3.01
7247 7894 6.664515 TGAGGCAAAGTATAAAAACAGTTCG 58.335 36.000 0.00 0.00 0.00 3.95
7248 7895 6.483974 TGAGGCAAAGTATAAAAACAGTTCGA 59.516 34.615 0.00 0.00 0.00 3.71
7280 7927 3.821600 TGGAACTGTTTTGCCGCTATTAA 59.178 39.130 0.00 0.00 0.00 1.40
7366 8013 3.311106 CGGAGCTACGTACAAAACTTCA 58.689 45.455 11.15 0.00 0.00 3.02
7445 8105 5.810525 ACGTCAAGACTGAAACAAAATCTG 58.189 37.500 0.00 0.00 31.88 2.90
7459 8126 2.586648 AATCTGGGAGGTTTGGACAC 57.413 50.000 0.00 0.00 0.00 3.67
7483 8150 3.281240 CCAGCACATGGCCAAGTC 58.719 61.111 10.96 5.97 43.83 3.01
7485 8152 1.180456 CCAGCACATGGCCAAGTCAA 61.180 55.000 10.96 0.00 43.83 3.18
7488 8155 1.547372 AGCACATGGCCAAGTCAAATC 59.453 47.619 10.96 0.00 46.50 2.17
7489 8156 1.547372 GCACATGGCCAAGTCAAATCT 59.453 47.619 10.96 0.00 36.11 2.40
7491 8158 2.094390 CACATGGCCAAGTCAAATCTGG 60.094 50.000 10.96 0.00 0.00 3.86
7492 8159 2.225091 ACATGGCCAAGTCAAATCTGGA 60.225 45.455 10.96 0.00 0.00 3.86
7493 8160 2.673775 TGGCCAAGTCAAATCTGGAA 57.326 45.000 0.61 0.00 0.00 3.53
7494 8161 2.238521 TGGCCAAGTCAAATCTGGAAC 58.761 47.619 0.61 0.00 0.00 3.62
7495 8162 2.158475 TGGCCAAGTCAAATCTGGAACT 60.158 45.455 0.61 0.00 0.00 3.01
7566 8264 4.768968 CAGTTCCTTGAGGTGGATCATTTT 59.231 41.667 0.00 0.00 36.34 1.82
7644 8346 2.746362 GCCAGGTGAGAACTTTGATGAG 59.254 50.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.725557 TAGCCGCTCGTCATGTCCTC 61.726 60.000 0.00 0.00 0.00 3.71
2 3 1.729470 CTAGCCGCTCGTCATGTCCT 61.729 60.000 0.00 0.00 0.00 3.85
4 5 1.299468 CCTAGCCGCTCGTCATGTC 60.299 63.158 0.00 0.00 0.00 3.06
5 6 2.808315 CCTAGCCGCTCGTCATGT 59.192 61.111 0.00 0.00 0.00 3.21
7 8 4.271816 CGCCTAGCCGCTCGTCAT 62.272 66.667 0.00 0.00 0.00 3.06
18 19 4.819761 TTGAGCCGCTGCGCCTAG 62.820 66.667 18.00 3.88 44.33 3.02
19 20 4.819761 CTTGAGCCGCTGCGCCTA 62.820 66.667 18.00 0.00 44.33 3.93
39 40 4.827087 ACTGATGCCAGCGCCTCG 62.827 66.667 2.29 0.00 44.16 4.63
40 41 2.894387 GACTGATGCCAGCGCCTC 60.894 66.667 2.29 0.00 44.16 4.70
41 42 3.382803 GAGACTGATGCCAGCGCCT 62.383 63.158 2.29 0.00 44.16 5.52
42 43 2.866085 AAGAGACTGATGCCAGCGCC 62.866 60.000 2.29 0.00 44.16 6.53
43 44 1.449246 AAGAGACTGATGCCAGCGC 60.449 57.895 0.00 0.00 44.16 5.92
44 45 1.703438 GCAAGAGACTGATGCCAGCG 61.703 60.000 0.00 0.00 44.16 5.18
45 46 0.675837 TGCAAGAGACTGATGCCAGC 60.676 55.000 6.61 0.00 44.16 4.85
46 47 1.370609 CTGCAAGAGACTGATGCCAG 58.629 55.000 6.61 0.00 40.96 4.85
47 48 0.035725 CCTGCAAGAGACTGATGCCA 60.036 55.000 6.61 0.00 39.31 4.92
48 49 0.747283 CCCTGCAAGAGACTGATGCC 60.747 60.000 6.61 0.00 39.31 4.40
49 50 0.747283 CCCCTGCAAGAGACTGATGC 60.747 60.000 2.76 2.76 40.45 3.91
50 51 0.747283 GCCCCTGCAAGAGACTGATG 60.747 60.000 0.00 0.00 34.07 3.07
51 52 1.203441 TGCCCCTGCAAGAGACTGAT 61.203 55.000 0.00 0.00 46.66 2.90
52 53 1.842920 TGCCCCTGCAAGAGACTGA 60.843 57.895 0.00 0.00 46.66 3.41
53 54 2.752358 TGCCCCTGCAAGAGACTG 59.248 61.111 0.00 0.00 46.66 3.51
62 63 2.521708 AACACCTGTTGCCCCTGC 60.522 61.111 0.00 0.00 36.80 4.85
70 71 0.969917 TGTGCCTTGCAACACCTGTT 60.970 50.000 15.33 0.00 41.47 3.16
71 72 1.379710 TGTGCCTTGCAACACCTGT 60.380 52.632 15.33 0.00 41.47 4.00
72 73 1.361271 CTGTGCCTTGCAACACCTG 59.639 57.895 15.33 6.76 41.47 4.00
73 74 1.076777 ACTGTGCCTTGCAACACCT 60.077 52.632 15.33 1.04 41.47 4.00
74 75 1.066257 CACTGTGCCTTGCAACACC 59.934 57.895 15.33 0.00 41.47 4.16
75 76 1.066257 CCACTGTGCCTTGCAACAC 59.934 57.895 12.08 12.08 41.47 3.32
76 77 0.106967 TACCACTGTGCCTTGCAACA 60.107 50.000 1.29 0.00 41.47 3.33
77 78 0.310854 GTACCACTGTGCCTTGCAAC 59.689 55.000 1.29 0.00 41.47 4.17
78 79 0.106967 TGTACCACTGTGCCTTGCAA 60.107 50.000 1.29 0.00 41.47 4.08
79 80 0.106967 TTGTACCACTGTGCCTTGCA 60.107 50.000 1.29 0.00 35.60 4.08
80 81 0.310854 GTTGTACCACTGTGCCTTGC 59.689 55.000 1.29 0.00 0.00 4.01
81 82 0.586319 CGTTGTACCACTGTGCCTTG 59.414 55.000 1.29 0.00 0.00 3.61
82 83 0.534203 CCGTTGTACCACTGTGCCTT 60.534 55.000 1.29 0.00 0.00 4.35
83 84 1.070786 CCGTTGTACCACTGTGCCT 59.929 57.895 1.29 0.00 0.00 4.75
84 85 1.070105 TCCGTTGTACCACTGTGCC 59.930 57.895 1.29 0.00 0.00 5.01
85 86 1.554042 CGTCCGTTGTACCACTGTGC 61.554 60.000 1.29 0.00 0.00 4.57
86 87 1.554042 GCGTCCGTTGTACCACTGTG 61.554 60.000 0.00 0.00 0.00 3.66
87 88 1.300388 GCGTCCGTTGTACCACTGT 60.300 57.895 0.00 0.00 0.00 3.55
88 89 0.876777 TTGCGTCCGTTGTACCACTG 60.877 55.000 0.00 0.00 0.00 3.66
89 90 0.599204 CTTGCGTCCGTTGTACCACT 60.599 55.000 0.00 0.00 0.00 4.00
90 91 1.857364 CTTGCGTCCGTTGTACCAC 59.143 57.895 0.00 0.00 0.00 4.16
91 92 1.957186 GCTTGCGTCCGTTGTACCA 60.957 57.895 0.00 0.00 0.00 3.25
92 93 2.858158 GCTTGCGTCCGTTGTACC 59.142 61.111 0.00 0.00 0.00 3.34
93 94 2.305127 ACGCTTGCGTCCGTTGTAC 61.305 57.895 15.19 0.00 33.26 2.90
94 95 2.027897 ACGCTTGCGTCCGTTGTA 59.972 55.556 15.19 0.00 33.26 2.41
95 96 3.636043 CACGCTTGCGTCCGTTGT 61.636 61.111 18.03 0.00 35.17 3.32
96 97 3.558282 GACACGCTTGCGTCCGTTG 62.558 63.158 18.03 9.13 35.17 4.10
97 98 3.335534 GACACGCTTGCGTCCGTT 61.336 61.111 18.03 2.93 35.17 4.44
101 102 2.740714 GGATGGACACGCTTGCGTC 61.741 63.158 18.03 7.92 0.00 5.19
102 103 2.742372 GGATGGACACGCTTGCGT 60.742 61.111 15.19 15.19 0.00 5.24
103 104 2.108514 ATGGATGGACACGCTTGCG 61.109 57.895 13.70 13.70 0.00 4.85
104 105 1.430632 CATGGATGGACACGCTTGC 59.569 57.895 0.00 0.00 0.00 4.01
115 116 1.314534 TTGCCGAACTGCCATGGATG 61.315 55.000 18.40 9.52 0.00 3.51
116 117 1.001020 TTGCCGAACTGCCATGGAT 60.001 52.632 18.40 0.00 0.00 3.41
117 118 1.971167 GTTGCCGAACTGCCATGGA 60.971 57.895 18.40 0.00 0.00 3.41
118 119 2.568090 GTTGCCGAACTGCCATGG 59.432 61.111 7.63 7.63 0.00 3.66
119 120 2.176546 CGTTGCCGAACTGCCATG 59.823 61.111 0.00 0.00 35.63 3.66
120 121 3.737172 GCGTTGCCGAACTGCCAT 61.737 61.111 0.00 0.00 35.63 4.40
136 137 4.792804 GGGAGGAGCAGCACAGGC 62.793 72.222 0.00 0.00 41.61 4.85
137 138 4.106925 GGGGAGGAGCAGCACAGG 62.107 72.222 0.00 0.00 0.00 4.00
138 139 4.106925 GGGGGAGGAGCAGCACAG 62.107 72.222 0.00 0.00 0.00 3.66
139 140 4.664267 AGGGGGAGGAGCAGCACA 62.664 66.667 0.00 0.00 0.00 4.57
140 141 3.791586 GAGGGGGAGGAGCAGCAC 61.792 72.222 0.00 0.00 0.00 4.40
157 158 3.838271 TAAGGAGGCTGAGCGCGG 61.838 66.667 8.83 0.00 40.44 6.46
158 159 2.583593 GTAAGGAGGCTGAGCGCG 60.584 66.667 0.00 0.00 40.44 6.86
196 197 3.792736 CCCCCGCCATCCTCGAAA 61.793 66.667 0.00 0.00 0.00 3.46
228 229 4.228567 TGACGCGACACTGGCCAA 62.229 61.111 15.93 0.00 0.00 4.52
229 230 4.662961 CTGACGCGACACTGGCCA 62.663 66.667 15.93 4.71 0.00 5.36
253 254 0.523072 CCTTGTTGTGGCTTCGGATG 59.477 55.000 0.00 0.00 0.00 3.51
255 256 0.250295 CTCCTTGTTGTGGCTTCGGA 60.250 55.000 0.00 0.00 0.00 4.55
258 259 0.868406 CGACTCCTTGTTGTGGCTTC 59.132 55.000 0.00 0.00 0.00 3.86
259 260 0.180406 ACGACTCCTTGTTGTGGCTT 59.820 50.000 0.00 0.00 41.49 4.35
262 263 0.031585 TCGACGACTCCTTGTTGTGG 59.968 55.000 0.00 0.00 42.99 4.17
298 299 1.780309 ACCAAGTCCCATGACCTTGAA 59.220 47.619 15.99 0.00 42.81 2.69
305 306 1.741028 TCCTGAACCAAGTCCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
311 312 4.899502 TCTTCTCATTCCTGAACCAAGTC 58.100 43.478 0.00 0.00 0.00 3.01
315 316 2.354103 CGCTCTTCTCATTCCTGAACCA 60.354 50.000 0.00 0.00 0.00 3.67
320 321 1.202510 CCCTCGCTCTTCTCATTCCTG 60.203 57.143 0.00 0.00 0.00 3.86
321 322 1.118838 CCCTCGCTCTTCTCATTCCT 58.881 55.000 0.00 0.00 0.00 3.36
332 333 3.189495 CCTTCTTTCTTTTTCCCTCGCTC 59.811 47.826 0.00 0.00 0.00 5.03
334 335 2.229062 CCCTTCTTTCTTTTTCCCTCGC 59.771 50.000 0.00 0.00 0.00 5.03
338 339 3.578716 CCTTCCCCTTCTTTCTTTTTCCC 59.421 47.826 0.00 0.00 0.00 3.97
342 343 2.158158 CCCCCTTCCCCTTCTTTCTTTT 60.158 50.000 0.00 0.00 0.00 2.27
348 349 0.198696 TTCTCCCCCTTCCCCTTCTT 59.801 55.000 0.00 0.00 0.00 2.52
359 360 0.322906 CTGAGCACCTTTTCTCCCCC 60.323 60.000 0.00 0.00 0.00 5.40
378 379 3.698463 CACGACCCACACGAACGC 61.698 66.667 0.00 0.00 34.70 4.84
385 386 0.389296 CGCTACATTCACGACCCACA 60.389 55.000 0.00 0.00 0.00 4.17
386 387 0.108992 TCGCTACATTCACGACCCAC 60.109 55.000 0.00 0.00 0.00 4.61
408 409 1.522668 CCACGTCATTTTCTGCAGGA 58.477 50.000 15.13 0.46 0.00 3.86
415 416 0.110373 GTGGTCGCCACGTCATTTTC 60.110 55.000 12.22 0.00 44.95 2.29
439 440 1.535088 GTCAGCGCGGATTTAAAAGC 58.465 50.000 14.65 0.00 0.00 3.51
444 445 1.517694 GACGGTCAGCGCGGATTTA 60.518 57.895 14.65 0.00 0.00 1.40
446 447 4.814294 GGACGGTCAGCGCGGATT 62.814 66.667 14.65 0.87 0.00 3.01
452 453 4.175489 ATCGTCGGACGGTCAGCG 62.175 66.667 28.07 13.24 42.81 5.18
469 470 2.432146 CAATCTCCGAACATCTCCCTCA 59.568 50.000 0.00 0.00 0.00 3.86
470 471 2.804933 GCAATCTCCGAACATCTCCCTC 60.805 54.545 0.00 0.00 0.00 4.30
472 473 1.134401 TGCAATCTCCGAACATCTCCC 60.134 52.381 0.00 0.00 0.00 4.30
478 479 5.471797 TCAGTTATTTTGCAATCTCCGAACA 59.528 36.000 0.00 0.00 0.00 3.18
499 500 6.038714 GGGAAATGTTATCTTGCTAAGGTCAG 59.961 42.308 0.00 0.00 0.00 3.51
504 505 9.832445 TTAGTAGGGAAATGTTATCTTGCTAAG 57.168 33.333 0.00 0.00 0.00 2.18
544 545 2.859165 AAGCAATTTCGGACAGAGGA 57.141 45.000 0.00 0.00 0.00 3.71
658 687 8.148351 GCCGAGTAGATCTACATCTATCTATCT 58.852 40.741 29.85 8.79 42.51 1.98
659 688 7.386848 GGCCGAGTAGATCTACATCTATCTATC 59.613 44.444 29.85 16.25 42.51 2.08
694 723 2.287584 TGGGGAGGAAATGAAGATGGT 58.712 47.619 0.00 0.00 0.00 3.55
725 755 0.242825 TTCGCGGAGACAAGTAGGTG 59.757 55.000 6.13 0.00 0.00 4.00
726 756 1.134560 GATTCGCGGAGACAAGTAGGT 59.865 52.381 6.13 0.00 0.00 3.08
836 874 2.813474 CCATCGGAGCGTGCGAAA 60.813 61.111 5.82 0.00 44.81 3.46
869 907 1.557371 GGGTCTCTTCCAGGAGAAAGG 59.443 57.143 0.00 0.00 42.95 3.11
902 941 0.400213 AGAAACCACGGCATTCCTGA 59.600 50.000 0.00 0.00 0.00 3.86
1017 1056 1.134367 GGAATTAGGGTTTTCGCTGGC 59.866 52.381 0.00 0.00 43.01 4.85
1020 1059 2.576648 AGGAGGAATTAGGGTTTTCGCT 59.423 45.455 0.00 0.00 45.12 4.93
1081 1120 4.171005 GCTTAGAAAAACCCCAAATACGC 58.829 43.478 0.00 0.00 0.00 4.42
1103 1148 1.971695 GAACAGGGAACAAGCGGGG 60.972 63.158 0.00 0.00 0.00 5.73
1292 1338 2.143122 ACACCAACATGTAGAGCAACG 58.857 47.619 0.00 0.00 0.00 4.10
1504 1551 1.671328 CCACATGCTGCATTCTCAGAG 59.329 52.381 13.38 2.25 36.19 3.35
1562 1609 1.942677 TGGTTGACTAACACACCACG 58.057 50.000 0.00 0.00 38.58 4.94
1602 1649 8.821894 GTTCCATAAATGACAGAGCTTAACTAG 58.178 37.037 0.00 0.00 0.00 2.57
1638 1685 6.205464 CGGAACAGAGCCACATATGAATATTT 59.795 38.462 10.38 0.00 0.00 1.40
1661 1708 5.522460 ACAAGATATTGATAACGTGGTTCGG 59.478 40.000 7.16 0.00 44.69 4.30
1877 1924 4.870123 AGCCTTTTTGTATGATTGCACA 57.130 36.364 0.00 0.00 0.00 4.57
1924 1971 3.326836 TTGCATGGATGTACAACGAGA 57.673 42.857 0.00 0.00 0.00 4.04
2257 2304 1.672356 GCTGCACACAATCCGAGGT 60.672 57.895 0.00 0.00 0.00 3.85
2299 2346 3.181497 CCAAAACTGCATACAATCCGAGG 60.181 47.826 0.00 0.00 0.00 4.63
2549 2596 3.973267 GACTCGAGCACAGGACCGC 62.973 68.421 13.61 0.00 0.00 5.68
2609 2656 5.130292 TGGTACTAAAAGACAGAACCTCG 57.870 43.478 0.00 0.00 0.00 4.63
2699 2746 3.458487 CCCTAAGCCCATTAACCAGTAGT 59.542 47.826 0.00 0.00 0.00 2.73
2770 2817 2.743928 CCAGGCCTCAACGTCTGC 60.744 66.667 0.00 0.00 0.00 4.26
2805 2852 4.962155 ACTGAGAGAAAAGATTCAACGGT 58.038 39.130 0.00 0.00 38.06 4.83
2806 2853 5.931441 AACTGAGAGAAAAGATTCAACGG 57.069 39.130 0.00 0.00 38.06 4.44
2813 2860 4.731313 ACCCCAAACTGAGAGAAAAGAT 57.269 40.909 0.00 0.00 0.00 2.40
2870 2917 0.328258 ATCTGCTGGCGTTTTAGGGT 59.672 50.000 0.00 0.00 0.00 4.34
3215 3270 2.416431 GCAATTACAGCAGCCTTTCCAG 60.416 50.000 0.00 0.00 0.00 3.86
3259 3314 5.420739 GGGGCAACAGATTGAAAAGGTATAA 59.579 40.000 0.00 0.00 38.15 0.98
3278 3333 4.353788 AGGTTCAGCATATAAATAGGGGCA 59.646 41.667 0.00 0.00 0.00 5.36
3279 3334 4.702131 CAGGTTCAGCATATAAATAGGGGC 59.298 45.833 0.00 0.00 0.00 5.80
3280 3335 5.014123 TCCAGGTTCAGCATATAAATAGGGG 59.986 44.000 0.00 0.00 0.00 4.79
3281 3336 6.126863 TCCAGGTTCAGCATATAAATAGGG 57.873 41.667 0.00 0.00 0.00 3.53
3282 3337 7.227156 AGTTCCAGGTTCAGCATATAAATAGG 58.773 38.462 0.00 0.00 0.00 2.57
3283 3338 8.682936 AAGTTCCAGGTTCAGCATATAAATAG 57.317 34.615 0.00 0.00 0.00 1.73
3284 3339 9.474313 AAAAGTTCCAGGTTCAGCATATAAATA 57.526 29.630 0.00 0.00 0.00 1.40
3285 3340 7.961326 AAAGTTCCAGGTTCAGCATATAAAT 57.039 32.000 0.00 0.00 0.00 1.40
3286 3341 7.775053 AAAAGTTCCAGGTTCAGCATATAAA 57.225 32.000 0.00 0.00 0.00 1.40
3287 3342 9.120538 GATAAAAGTTCCAGGTTCAGCATATAA 57.879 33.333 0.00 0.00 0.00 0.98
3288 3343 8.271458 TGATAAAAGTTCCAGGTTCAGCATATA 58.729 33.333 0.00 0.00 0.00 0.86
3289 3344 7.118723 TGATAAAAGTTCCAGGTTCAGCATAT 58.881 34.615 0.00 0.00 0.00 1.78
3290 3345 6.480763 TGATAAAAGTTCCAGGTTCAGCATA 58.519 36.000 0.00 0.00 0.00 3.14
3291 3346 5.324409 TGATAAAAGTTCCAGGTTCAGCAT 58.676 37.500 0.00 0.00 0.00 3.79
3456 3525 9.451002 TTTCATCATTGGCATTGTTGATATTTT 57.549 25.926 18.54 0.00 0.00 1.82
3777 3846 0.033796 AGCCACCCAGTCCATGAATG 60.034 55.000 0.00 0.00 0.00 2.67
3810 3879 1.376609 CGGTAAACCTCCCATGCAGC 61.377 60.000 0.00 0.00 0.00 5.25
3864 3933 9.050601 CCAAGAGAGAATAAGGACATTCAATAC 57.949 37.037 0.00 0.00 37.38 1.89
3914 3983 2.923655 CAGAGTGTAATAGTGCACGGTG 59.076 50.000 12.01 3.15 44.37 4.94
3917 3986 2.600420 CTGCAGAGTGTAATAGTGCACG 59.400 50.000 8.42 0.00 44.37 5.34
4336 4405 6.138702 GCAAAACTCGACGAAAAGAAAACTAG 59.861 38.462 0.00 0.00 0.00 2.57
4352 4421 3.248602 AGAGTACAAGCAAGCAAAACTCG 59.751 43.478 0.00 0.00 37.53 4.18
4414 4483 0.319083 TCGATTACGCACCCAAGTGT 59.681 50.000 0.00 0.00 46.35 3.55
4626 4703 4.592942 AGAAGGCAAATTGACTGCAGATA 58.407 39.130 23.35 5.56 31.94 1.98
4720 4797 7.660030 ACATAAATCCGGGAGATCAAAAATT 57.340 32.000 0.00 0.00 32.47 1.82
4727 4804 5.723672 TGAGTACATAAATCCGGGAGATC 57.276 43.478 0.00 0.00 32.47 2.75
4914 4992 7.719633 AGTTTAACTTGCTCTTCCATTTCAGTA 59.280 33.333 0.00 0.00 0.00 2.74
5069 5147 5.484173 TCGATATTGTGAATGCACCTTTC 57.516 39.130 0.00 0.00 44.51 2.62
5286 5364 3.759086 TCAGCAGTTCGTCATAGAGAAGT 59.241 43.478 0.00 0.00 0.00 3.01
5291 5369 4.991153 AAGATCAGCAGTTCGTCATAGA 57.009 40.909 0.00 0.00 0.00 1.98
5371 5449 6.070596 CCCAAGATGCACCATACAGATATCTA 60.071 42.308 4.54 0.00 0.00 1.98
5372 5450 5.280368 CCCAAGATGCACCATACAGATATCT 60.280 44.000 0.00 0.00 0.00 1.98
5373 5451 4.940046 CCCAAGATGCACCATACAGATATC 59.060 45.833 0.00 0.00 0.00 1.63
5374 5452 4.808665 GCCCAAGATGCACCATACAGATAT 60.809 45.833 0.00 0.00 0.00 1.63
5375 5453 3.496692 GCCCAAGATGCACCATACAGATA 60.497 47.826 0.00 0.00 0.00 1.98
5376 5454 2.750807 GCCCAAGATGCACCATACAGAT 60.751 50.000 0.00 0.00 0.00 2.90
5377 5455 1.408683 GCCCAAGATGCACCATACAGA 60.409 52.381 0.00 0.00 0.00 3.41
5378 5456 1.027357 GCCCAAGATGCACCATACAG 58.973 55.000 0.00 0.00 0.00 2.74
5379 5457 0.330941 TGCCCAAGATGCACCATACA 59.669 50.000 0.00 0.00 32.85 2.29
5380 5458 1.696063 ATGCCCAAGATGCACCATAC 58.304 50.000 0.00 0.00 42.38 2.39
5638 5735 9.461312 TGTCAAGGTTGAAATTAGTAATGCTAT 57.539 29.630 0.00 0.00 39.21 2.97
5648 5745 4.615682 CGCAGCATGTCAAGGTTGAAATTA 60.616 41.667 0.00 0.00 39.21 1.40
5650 5747 2.352030 CGCAGCATGTCAAGGTTGAAAT 60.352 45.455 0.00 0.00 39.21 2.17
5651 5748 1.001487 CGCAGCATGTCAAGGTTGAAA 60.001 47.619 0.00 0.00 39.21 2.69
5693 5791 9.593565 AGTCTAAGATACTCCATCAATATCACA 57.406 33.333 0.00 0.00 35.96 3.58
5769 5868 1.202498 GCTCCGTATGTGGTCCCTTAC 60.202 57.143 0.00 0.00 0.00 2.34
5778 5877 3.684305 TCACTCATTTTGCTCCGTATGTG 59.316 43.478 0.00 0.00 0.00 3.21
5914 6013 5.071115 GGAACCAAAGCCTATCAGACTATCT 59.929 44.000 0.00 0.00 0.00 1.98
5960 6059 6.996509 AGCATGTTTGTATTCTCCAAAACAT 58.003 32.000 6.76 6.76 33.89 2.71
5997 6096 8.571336 ACATTAGCATAGATAAAGCATTCAACC 58.429 33.333 0.00 0.00 0.00 3.77
6019 6118 5.099042 ACCGACCAGAGCTAATAAACATT 57.901 39.130 0.00 0.00 0.00 2.71
6091 6395 0.875059 GCGTAACTGCTGCTTCCTTT 59.125 50.000 0.00 0.00 0.00 3.11
6145 6449 9.298250 GAAGGTATCTTGGTATCAGTAGACATA 57.702 37.037 0.00 0.00 32.52 2.29
6402 6708 1.065418 CCTCCCGGAGTTGTAGCAAAT 60.065 52.381 13.62 0.00 0.00 2.32
6425 6731 1.943340 GAGTAGTAGCTGCAAATGGGC 59.057 52.381 4.12 0.00 0.00 5.36
6489 6795 2.877097 TATTTCCAGGAGTTGCTGCA 57.123 45.000 0.00 0.00 0.00 4.41
6575 6937 7.975058 GGAGTAGAATCTAGCGTTAAGAACTTT 59.025 37.037 0.00 0.00 0.00 2.66
6596 6958 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
6597 6959 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
6598 6960 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
6599 6961 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
6600 6962 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
6601 6963 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
6604 6966 9.694137 CCTAGAAAGACTTATATTTAGGAACGG 57.306 37.037 0.00 0.00 0.00 4.44
6627 6989 9.537192 CCGTATGTAGTTTGTATTGAAATCCTA 57.463 33.333 0.00 0.00 0.00 2.94
6628 6990 8.262227 TCCGTATGTAGTTTGTATTGAAATCCT 58.738 33.333 0.00 0.00 0.00 3.24
6629 6991 8.428186 TCCGTATGTAGTTTGTATTGAAATCC 57.572 34.615 0.00 0.00 0.00 3.01
6630 6992 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
6631 6993 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
6632 6994 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
6661 7023 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
6662 7024 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
6663 7025 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
6664 7026 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
6665 7027 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
6666 7028 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
6667 7029 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
6668 7030 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
6669 7031 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
6670 7032 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
6671 7033 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
6672 7034 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
6673 7035 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
6674 7036 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
6675 7037 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
6676 7038 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
6677 7039 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
6678 7040 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6679 7041 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6680 7042 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6681 7043 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6682 7044 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6683 7045 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6684 7046 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6685 7047 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6686 7048 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6687 7049 5.233050 CAGACTACATACGGAGCAAAATGAG 59.767 44.000 0.00 0.00 0.00 2.90
6688 7050 5.109210 CAGACTACATACGGAGCAAAATGA 58.891 41.667 0.00 0.00 0.00 2.57
6689 7051 4.870426 ACAGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
6690 7052 5.086104 ACAGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6691 7053 4.530710 ACAGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
6692 7054 4.703575 ACTACAGACTACATACGGAGCAAA 59.296 41.667 0.00 0.00 0.00 3.68
6693 7055 4.095932 CACTACAGACTACATACGGAGCAA 59.904 45.833 0.00 0.00 0.00 3.91
6694 7056 3.626217 CACTACAGACTACATACGGAGCA 59.374 47.826 0.00 0.00 0.00 4.26
6695 7057 3.875727 TCACTACAGACTACATACGGAGC 59.124 47.826 0.00 0.00 0.00 4.70
6696 7058 6.432607 TTTCACTACAGACTACATACGGAG 57.567 41.667 0.00 0.00 0.00 4.63
6697 7059 6.827251 AGATTTCACTACAGACTACATACGGA 59.173 38.462 0.00 0.00 0.00 4.69
6698 7060 7.028926 AGATTTCACTACAGACTACATACGG 57.971 40.000 0.00 0.00 0.00 4.02
6699 7061 8.912787 AAAGATTTCACTACAGACTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
6725 7087 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
6726 7088 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
6727 7089 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
6728 7090 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
6729 7091 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
6730 7092 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
6731 7093 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
6732 7094 8.858094 ACTACTTCCTCCGTTCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
6733 7095 8.636213 CACTACTTCCTCCGTTCCTAAATATAA 58.364 37.037 0.00 0.00 0.00 0.98
6734 7096 7.255730 GCACTACTTCCTCCGTTCCTAAATATA 60.256 40.741 0.00 0.00 0.00 0.86
6735 7097 6.462628 GCACTACTTCCTCCGTTCCTAAATAT 60.463 42.308 0.00 0.00 0.00 1.28
6736 7098 5.163478 GCACTACTTCCTCCGTTCCTAAATA 60.163 44.000 0.00 0.00 0.00 1.40
6737 7099 4.382793 GCACTACTTCCTCCGTTCCTAAAT 60.383 45.833 0.00 0.00 0.00 1.40
6738 7100 3.056322 GCACTACTTCCTCCGTTCCTAAA 60.056 47.826 0.00 0.00 0.00 1.85
6739 7101 2.494870 GCACTACTTCCTCCGTTCCTAA 59.505 50.000 0.00 0.00 0.00 2.69
6740 7102 2.097825 GCACTACTTCCTCCGTTCCTA 58.902 52.381 0.00 0.00 0.00 2.94
6741 7103 0.896226 GCACTACTTCCTCCGTTCCT 59.104 55.000 0.00 0.00 0.00 3.36
6742 7104 0.606604 TGCACTACTTCCTCCGTTCC 59.393 55.000 0.00 0.00 0.00 3.62
6743 7105 1.000506 TGTGCACTACTTCCTCCGTTC 59.999 52.381 19.41 0.00 0.00 3.95
6744 7106 1.000955 CTGTGCACTACTTCCTCCGTT 59.999 52.381 19.41 0.00 0.00 4.44
6745 7107 0.603569 CTGTGCACTACTTCCTCCGT 59.396 55.000 19.41 0.00 0.00 4.69
6746 7108 0.603569 ACTGTGCACTACTTCCTCCG 59.396 55.000 19.41 0.00 0.00 4.63
6747 7109 2.166664 CCTACTGTGCACTACTTCCTCC 59.833 54.545 19.41 0.00 0.00 4.30
6748 7110 2.166664 CCCTACTGTGCACTACTTCCTC 59.833 54.545 19.41 0.00 0.00 3.71
6749 7111 2.180276 CCCTACTGTGCACTACTTCCT 58.820 52.381 19.41 0.00 0.00 3.36
6750 7112 2.176889 TCCCTACTGTGCACTACTTCC 58.823 52.381 19.41 0.00 0.00 3.46
6751 7113 3.786635 CATCCCTACTGTGCACTACTTC 58.213 50.000 19.41 0.00 0.00 3.01
6752 7114 2.093447 GCATCCCTACTGTGCACTACTT 60.093 50.000 19.41 1.87 38.68 2.24
6753 7115 1.482593 GCATCCCTACTGTGCACTACT 59.517 52.381 19.41 2.52 38.68 2.57
6754 7116 1.207089 TGCATCCCTACTGTGCACTAC 59.793 52.381 19.41 0.00 43.30 2.73
6867 7229 5.063017 TCTATCACCGTATCTTCCCTCTT 57.937 43.478 0.00 0.00 0.00 2.85
6869 7231 5.071370 TCTTCTATCACCGTATCTTCCCTC 58.929 45.833 0.00 0.00 0.00 4.30
6990 7352 0.255318 CTCCTGCCTTCTTCCAGCAT 59.745 55.000 0.00 0.00 35.64 3.79
7057 7419 2.193447 TCGCTGACAATACGCTGATTC 58.807 47.619 0.00 0.00 0.00 2.52
7095 7457 6.183360 TGTCAAAGAATGGTCACTTCTGACTA 60.183 38.462 4.57 0.00 45.56 2.59
7164 7811 6.154203 TCATTCACACATAACAGCCAAAAA 57.846 33.333 0.00 0.00 0.00 1.94
7180 7827 4.208873 GCTCGATGACAGAGATTCATTCAC 59.791 45.833 0.00 0.00 37.93 3.18
7181 7828 4.142093 TGCTCGATGACAGAGATTCATTCA 60.142 41.667 0.00 0.00 37.93 2.57
7222 7869 6.797033 CGAACTGTTTTTATACTTTGCCTCAG 59.203 38.462 0.00 0.00 0.00 3.35
7223 7870 6.483974 TCGAACTGTTTTTATACTTTGCCTCA 59.516 34.615 0.00 0.00 0.00 3.86
7224 7871 6.795593 GTCGAACTGTTTTTATACTTTGCCTC 59.204 38.462 0.00 0.00 0.00 4.70
7225 7872 6.565247 CGTCGAACTGTTTTTATACTTTGCCT 60.565 38.462 0.00 0.00 0.00 4.75
7226 7873 5.562623 CGTCGAACTGTTTTTATACTTTGCC 59.437 40.000 0.00 0.00 0.00 4.52
7227 7874 6.357198 TCGTCGAACTGTTTTTATACTTTGC 58.643 36.000 0.00 0.00 0.00 3.68
7228 7875 8.928844 ATTCGTCGAACTGTTTTTATACTTTG 57.071 30.769 10.39 0.00 0.00 2.77
7229 7876 9.940166 AAATTCGTCGAACTGTTTTTATACTTT 57.060 25.926 10.39 0.00 0.00 2.66
7230 7877 9.590088 GAAATTCGTCGAACTGTTTTTATACTT 57.410 29.630 10.39 0.00 0.00 2.24
7231 7878 8.225777 GGAAATTCGTCGAACTGTTTTTATACT 58.774 33.333 10.39 0.00 0.00 2.12
7232 7879 8.225777 AGGAAATTCGTCGAACTGTTTTTATAC 58.774 33.333 10.39 1.80 0.00 1.47
7233 7880 8.225107 CAGGAAATTCGTCGAACTGTTTTTATA 58.775 33.333 10.39 0.00 0.00 0.98
7234 7881 7.075741 CAGGAAATTCGTCGAACTGTTTTTAT 58.924 34.615 10.39 0.00 0.00 1.40
7235 7882 6.423862 CAGGAAATTCGTCGAACTGTTTTTA 58.576 36.000 10.39 0.00 0.00 1.52
7236 7883 5.270853 CAGGAAATTCGTCGAACTGTTTTT 58.729 37.500 10.39 6.52 0.00 1.94
7237 7884 4.261031 CCAGGAAATTCGTCGAACTGTTTT 60.261 41.667 10.39 6.90 0.00 2.43
7238 7885 3.250040 CCAGGAAATTCGTCGAACTGTTT 59.750 43.478 10.39 7.27 0.00 2.83
7239 7886 2.806244 CCAGGAAATTCGTCGAACTGTT 59.194 45.455 10.39 5.01 0.00 3.16
7240 7887 2.036733 TCCAGGAAATTCGTCGAACTGT 59.963 45.455 10.39 0.00 0.00 3.55
7241 7888 2.683968 TCCAGGAAATTCGTCGAACTG 58.316 47.619 10.39 12.37 0.00 3.16
7242 7889 3.064931 GTTCCAGGAAATTCGTCGAACT 58.935 45.455 10.39 0.00 32.38 3.01
7243 7890 3.064931 AGTTCCAGGAAATTCGTCGAAC 58.935 45.455 10.39 15.01 34.27 3.95
7244 7891 3.064207 CAGTTCCAGGAAATTCGTCGAA 58.936 45.455 10.61 10.61 0.00 3.71
7245 7892 2.036733 ACAGTTCCAGGAAATTCGTCGA 59.963 45.455 2.45 0.00 0.00 4.20
7246 7893 2.413837 ACAGTTCCAGGAAATTCGTCG 58.586 47.619 2.45 0.00 0.00 5.12
7247 7894 4.830826 AAACAGTTCCAGGAAATTCGTC 57.169 40.909 2.45 0.00 0.00 4.20
7248 7895 4.736464 GCAAAACAGTTCCAGGAAATTCGT 60.736 41.667 2.45 0.00 0.00 3.85
7280 7927 5.609423 TGTTTACATCTTGCTTGCCAAATT 58.391 33.333 0.00 0.00 31.94 1.82
7366 8013 5.364446 TGCCTGCTGAATCAATTCCAATATT 59.636 36.000 0.48 0.00 35.97 1.28
7445 8105 0.251209 GAAGGGTGTCCAAACCTCCC 60.251 60.000 0.00 0.00 40.35 4.30
7483 8150 2.034939 TGCAGTGCAAGTTCCAGATTTG 59.965 45.455 17.26 0.00 34.76 2.32
7485 8152 1.884579 CTGCAGTGCAAGTTCCAGATT 59.115 47.619 20.22 0.00 38.41 2.40
7488 8155 1.002033 GAACTGCAGTGCAAGTTCCAG 60.002 52.381 30.16 18.00 38.94 3.86
7489 8156 1.024271 GAACTGCAGTGCAAGTTCCA 58.976 50.000 30.16 8.49 38.94 3.53
7491 8158 1.312815 AGGAACTGCAGTGCAAGTTC 58.687 50.000 31.26 31.26 41.34 3.01
7492 8159 1.406539 CAAGGAACTGCAGTGCAAGTT 59.593 47.619 26.30 23.90 40.86 2.66
7493 8160 1.027357 CAAGGAACTGCAGTGCAAGT 58.973 50.000 26.30 15.78 40.86 3.16
7494 8161 1.266175 CTCAAGGAACTGCAGTGCAAG 59.734 52.381 26.30 14.64 40.86 4.01
7495 8162 1.311859 CTCAAGGAACTGCAGTGCAA 58.688 50.000 26.30 7.63 40.86 4.08
7609 8307 1.734137 CTGGCCGTCGTATGTAGCT 59.266 57.895 0.00 0.00 0.00 3.32
7610 8308 1.299926 CCTGGCCGTCGTATGTAGC 60.300 63.158 0.00 0.00 0.00 3.58
7611 8309 0.248907 CACCTGGCCGTCGTATGTAG 60.249 60.000 0.00 0.00 0.00 2.74
7621 8323 0.250295 TCAAAGTTCTCACCTGGCCG 60.250 55.000 0.00 0.00 0.00 6.13
7644 8346 3.790152 AAAGGTACGTCCGATAACCTC 57.210 47.619 5.93 0.00 41.51 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.