Multiple sequence alignment - TraesCS3D01G165800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G165800 chr3D 100.000 3103 0 0 1 3103 137978574 137981676 0.000000e+00 5731.0
1 TraesCS3D01G165800 chr3D 97.338 526 12 2 1 525 559263559 559263035 0.000000e+00 893.0
2 TraesCS3D01G165800 chr3D 96.491 171 6 0 2901 3071 200383812 200383982 1.820000e-72 283.0
3 TraesCS3D01G165800 chr3D 95.152 165 7 1 2906 3069 612268448 612268612 3.070000e-65 259.0
4 TraesCS3D01G165800 chr3D 94.512 164 8 1 2905 3067 537154865 537154702 5.140000e-63 252.0
5 TraesCS3D01G165800 chr3D 90.265 113 5 5 1450 1559 417381197 417381306 3.230000e-30 143.0
6 TraesCS3D01G165800 chr3D 90.090 111 6 5 1452 1561 518129326 518129220 4.170000e-29 139.0
7 TraesCS3D01G165800 chr3A 91.733 1391 73 20 789 2167 155825051 155826411 0.000000e+00 1893.0
8 TraesCS3D01G165800 chr3A 95.549 337 15 0 2572 2908 155827102 155827438 9.790000e-150 540.0
9 TraesCS3D01G165800 chr3A 86.087 460 23 12 2109 2567 155826393 155826812 1.010000e-124 457.0
10 TraesCS3D01G165800 chr3A 92.083 240 17 2 522 760 525211427 525211665 1.380000e-88 337.0
11 TraesCS3D01G165800 chr3B 90.751 1384 75 31 777 2129 201025703 201027064 0.000000e+00 1797.0
12 TraesCS3D01G165800 chr3B 96.818 440 11 2 2471 2908 201027309 201027747 0.000000e+00 732.0
13 TraesCS3D01G165800 chr3B 89.231 260 24 4 522 779 420655315 420655572 3.860000e-84 322.0
14 TraesCS3D01G165800 chr3B 90.265 113 8 3 1457 1566 201025466 201025578 8.970000e-31 145.0
15 TraesCS3D01G165800 chr2D 97.524 525 12 1 1 525 298847554 298848077 0.000000e+00 896.0
16 TraesCS3D01G165800 chr2D 95.858 169 7 0 2901 3069 419068119 419068287 1.100000e-69 274.0
17 TraesCS3D01G165800 chr2D 93.220 59 4 0 727 785 69445525 69445467 1.530000e-13 87.9
18 TraesCS3D01G165800 chr7D 97.333 525 13 1 1 525 515476528 515477051 0.000000e+00 891.0
19 TraesCS3D01G165800 chr7D 97.143 525 13 2 1 525 636607220 636607742 0.000000e+00 885.0
20 TraesCS3D01G165800 chr7D 96.958 526 14 2 1 525 31108838 31109362 0.000000e+00 881.0
21 TraesCS3D01G165800 chr7D 95.349 172 6 2 2901 3070 563440140 563440311 3.940000e-69 272.0
22 TraesCS3D01G165800 chr7D 96.319 163 6 0 2905 3067 530857973 530858135 5.100000e-68 268.0
23 TraesCS3D01G165800 chr7D 86.607 112 12 3 1453 1562 496106737 496106847 1.510000e-23 121.0
24 TraesCS3D01G165800 chr6D 97.333 525 12 2 1 524 203757526 203758049 0.000000e+00 891.0
25 TraesCS3D01G165800 chr6D 96.442 534 15 4 1 533 352161626 352161096 0.000000e+00 878.0
26 TraesCS3D01G165800 chr1D 96.816 534 13 4 1 533 310163115 310163645 0.000000e+00 889.0
27 TraesCS3D01G165800 chr1D 94.681 94 5 0 1447 1540 475656796 475656889 2.490000e-31 147.0
28 TraesCS3D01G165800 chr5D 97.154 527 12 3 1 526 340959049 340959573 0.000000e+00 887.0
29 TraesCS3D01G165800 chr5D 96.124 258 6 3 522 776 548677130 548676874 4.790000e-113 418.0
30 TraesCS3D01G165800 chr5D 95.679 162 7 0 2907 3068 383645484 383645323 8.540000e-66 261.0
31 TraesCS3D01G165800 chr4D 95.349 258 8 3 522 776 3364205 3364461 1.040000e-109 407.0
32 TraesCS3D01G165800 chr4D 95.038 262 8 4 522 780 107689198 107688939 1.040000e-109 407.0
33 TraesCS3D01G165800 chr7A 94.545 165 9 0 2906 3070 3412891 3412727 3.970000e-64 255.0
34 TraesCS3D01G165800 chr7A 89.091 165 14 4 594 755 21709450 21709287 5.250000e-48 202.0
35 TraesCS3D01G165800 chr7A 89.041 73 8 0 522 594 21709490 21709418 1.190000e-14 91.6
36 TraesCS3D01G165800 chr6B 94.611 167 6 3 2906 3070 132353578 132353413 3.970000e-64 255.0
37 TraesCS3D01G165800 chr5A 86.905 168 20 2 594 760 11412820 11412986 1.470000e-43 187.0
38 TraesCS3D01G165800 chr2A 84.568 162 22 3 601 760 729204781 729204621 1.150000e-34 158.0
39 TraesCS3D01G165800 chr1A 92.381 105 7 1 1447 1550 571561464 571561568 6.930000e-32 148.0
40 TraesCS3D01G165800 chr1A 90.179 112 8 3 1447 1557 571359288 571359397 3.230000e-30 143.0
41 TraesCS3D01G165800 chrUn 91.509 106 4 4 1457 1560 32916329 32916431 1.160000e-29 141.0
42 TraesCS3D01G165800 chr4B 89.423 104 10 1 1452 1555 14344272 14344374 2.510000e-26 130.0
43 TraesCS3D01G165800 chr1B 93.220 59 4 0 727 785 314558932 314558874 1.530000e-13 87.9
44 TraesCS3D01G165800 chr1B 90.476 63 4 2 727 788 36516490 36516429 7.130000e-12 82.4
45 TraesCS3D01G165800 chr6A 93.103 58 4 0 727 784 135572368 135572311 5.510000e-13 86.1
46 TraesCS3D01G165800 chr7B 90.625 64 4 2 728 790 291940080 291940142 1.980000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G165800 chr3D 137978574 137981676 3102 False 5731.000000 5731 100.000000 1 3103 1 chr3D.!!$F1 3102
1 TraesCS3D01G165800 chr3D 559263035 559263559 524 True 893.000000 893 97.338000 1 525 1 chr3D.!!$R3 524
2 TraesCS3D01G165800 chr3A 155825051 155827438 2387 False 963.333333 1893 91.123000 789 2908 3 chr3A.!!$F2 2119
3 TraesCS3D01G165800 chr3B 201025466 201027747 2281 False 891.333333 1797 92.611333 777 2908 3 chr3B.!!$F2 2131
4 TraesCS3D01G165800 chr2D 298847554 298848077 523 False 896.000000 896 97.524000 1 525 1 chr2D.!!$F1 524
5 TraesCS3D01G165800 chr7D 515476528 515477051 523 False 891.000000 891 97.333000 1 525 1 chr7D.!!$F3 524
6 TraesCS3D01G165800 chr7D 636607220 636607742 522 False 885.000000 885 97.143000 1 525 1 chr7D.!!$F6 524
7 TraesCS3D01G165800 chr7D 31108838 31109362 524 False 881.000000 881 96.958000 1 525 1 chr7D.!!$F1 524
8 TraesCS3D01G165800 chr6D 203757526 203758049 523 False 891.000000 891 97.333000 1 524 1 chr6D.!!$F1 523
9 TraesCS3D01G165800 chr6D 352161096 352161626 530 True 878.000000 878 96.442000 1 533 1 chr6D.!!$R1 532
10 TraesCS3D01G165800 chr1D 310163115 310163645 530 False 889.000000 889 96.816000 1 533 1 chr1D.!!$F1 532
11 TraesCS3D01G165800 chr5D 340959049 340959573 524 False 887.000000 887 97.154000 1 526 1 chr5D.!!$F1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 654 0.030101 CTCGCGGCTAAGAGAGAAGG 59.97 60.0 6.13 0.0 39.87 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2500 2609 0.251564 CTGGTGGTTACATGGGCCAA 60.252 55.0 11.89 0.0 33.66 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 6.510879 TCTACAGTCGAAGCTTTTCTATCA 57.489 37.500 0.00 0.00 0.00 2.15
170 172 5.140454 AGCTTTTTCATCAAGGGTTGTAGT 58.860 37.500 0.00 0.00 0.00 2.73
531 534 3.807839 CCGGTGGGGGCATGATGA 61.808 66.667 0.00 0.00 0.00 2.92
532 535 2.516930 CGGTGGGGGCATGATGAC 60.517 66.667 0.00 0.00 0.00 3.06
533 536 2.682846 GGTGGGGGCATGATGACA 59.317 61.111 0.00 0.00 0.00 3.58
534 537 1.454479 GGTGGGGGCATGATGACAG 60.454 63.158 0.00 0.00 0.00 3.51
535 538 1.609239 GTGGGGGCATGATGACAGA 59.391 57.895 0.00 0.00 0.00 3.41
536 539 0.749454 GTGGGGGCATGATGACAGAC 60.749 60.000 0.00 0.00 0.00 3.51
537 540 1.524621 GGGGGCATGATGACAGACG 60.525 63.158 0.00 0.00 0.00 4.18
538 541 2.182842 GGGGCATGATGACAGACGC 61.183 63.158 0.00 0.00 0.00 5.19
539 542 1.450134 GGGCATGATGACAGACGCA 60.450 57.895 0.00 0.00 0.00 5.24
540 543 0.816825 GGGCATGATGACAGACGCAT 60.817 55.000 0.00 0.00 0.00 4.73
541 544 0.585357 GGCATGATGACAGACGCATC 59.415 55.000 0.00 0.00 41.87 3.91
542 545 0.585357 GCATGATGACAGACGCATCC 59.415 55.000 0.00 0.00 41.05 3.51
543 546 1.944032 CATGATGACAGACGCATCCA 58.056 50.000 0.00 0.00 41.05 3.41
544 547 2.490991 CATGATGACAGACGCATCCAT 58.509 47.619 0.00 0.00 41.05 3.41
545 548 1.944032 TGATGACAGACGCATCCATG 58.056 50.000 0.00 0.00 41.05 3.66
546 549 1.224075 GATGACAGACGCATCCATGG 58.776 55.000 4.97 4.97 36.91 3.66
547 550 0.816825 ATGACAGACGCATCCATGGC 60.817 55.000 6.96 0.00 0.00 4.40
561 564 2.264480 TGGCGACAACGGGATCTG 59.736 61.111 0.00 0.00 40.15 2.90
562 565 2.279810 TGGCGACAACGGGATCTGA 61.280 57.895 0.00 0.00 40.15 3.27
563 566 1.079405 GGCGACAACGGGATCTGAA 60.079 57.895 0.00 0.00 40.15 3.02
564 567 1.084370 GGCGACAACGGGATCTGAAG 61.084 60.000 0.00 0.00 40.15 3.02
565 568 1.084370 GCGACAACGGGATCTGAAGG 61.084 60.000 0.00 0.00 40.15 3.46
566 569 0.530744 CGACAACGGGATCTGAAGGA 59.469 55.000 0.00 0.00 35.72 3.36
567 570 1.469940 CGACAACGGGATCTGAAGGAG 60.470 57.143 0.00 0.00 35.72 3.69
568 571 0.905357 ACAACGGGATCTGAAGGAGG 59.095 55.000 0.00 0.00 0.00 4.30
569 572 1.195115 CAACGGGATCTGAAGGAGGA 58.805 55.000 0.00 0.00 0.00 3.71
570 573 1.555075 CAACGGGATCTGAAGGAGGAA 59.445 52.381 0.00 0.00 0.00 3.36
571 574 1.490574 ACGGGATCTGAAGGAGGAAG 58.509 55.000 0.00 0.00 0.00 3.46
572 575 1.007238 ACGGGATCTGAAGGAGGAAGA 59.993 52.381 0.00 0.00 0.00 2.87
573 576 1.410882 CGGGATCTGAAGGAGGAAGAC 59.589 57.143 0.00 0.00 0.00 3.01
574 577 1.765904 GGGATCTGAAGGAGGAAGACC 59.234 57.143 0.00 0.00 0.00 3.85
575 578 2.472029 GGATCTGAAGGAGGAAGACCA 58.528 52.381 0.00 0.00 38.94 4.02
576 579 2.433970 GGATCTGAAGGAGGAAGACCAG 59.566 54.545 0.00 0.00 38.94 4.00
577 580 1.944177 TCTGAAGGAGGAAGACCAGG 58.056 55.000 0.00 0.00 38.94 4.45
578 581 1.433199 TCTGAAGGAGGAAGACCAGGA 59.567 52.381 0.00 0.00 38.94 3.86
579 582 1.830477 CTGAAGGAGGAAGACCAGGAG 59.170 57.143 0.00 0.00 38.94 3.69
580 583 0.539518 GAAGGAGGAAGACCAGGAGC 59.460 60.000 0.00 0.00 38.94 4.70
581 584 1.261238 AAGGAGGAAGACCAGGAGCG 61.261 60.000 0.00 0.00 38.94 5.03
582 585 2.185608 GAGGAAGACCAGGAGCGC 59.814 66.667 0.00 0.00 38.94 5.92
583 586 3.708220 GAGGAAGACCAGGAGCGCG 62.708 68.421 0.00 0.00 38.94 6.86
584 587 4.821589 GGAAGACCAGGAGCGCGG 62.822 72.222 8.83 0.00 35.97 6.46
588 591 4.874977 GACCAGGAGCGCGGCTAC 62.875 72.222 8.83 6.44 39.88 3.58
610 613 2.977578 CGAAGGAGGAAGACCAGGA 58.022 57.895 0.00 0.00 38.94 3.86
611 614 1.267121 CGAAGGAGGAAGACCAGGAA 58.733 55.000 0.00 0.00 38.94 3.36
612 615 1.834263 CGAAGGAGGAAGACCAGGAAT 59.166 52.381 0.00 0.00 38.94 3.01
613 616 2.419297 CGAAGGAGGAAGACCAGGAATG 60.419 54.545 0.00 0.00 38.94 2.67
614 617 0.915364 AGGAGGAAGACCAGGAATGC 59.085 55.000 0.00 0.00 38.94 3.56
615 618 0.462759 GGAGGAAGACCAGGAATGCG 60.463 60.000 0.00 0.00 38.94 4.73
616 619 0.462759 GAGGAAGACCAGGAATGCGG 60.463 60.000 0.00 0.00 38.94 5.69
617 620 2.115291 GGAAGACCAGGAATGCGGC 61.115 63.158 0.00 0.00 35.97 6.53
618 621 2.436646 AAGACCAGGAATGCGGCG 60.437 61.111 0.51 0.51 0.00 6.46
619 622 2.852495 GAAGACCAGGAATGCGGCGA 62.852 60.000 12.98 0.00 0.00 5.54
620 623 3.195698 GACCAGGAATGCGGCGAC 61.196 66.667 12.98 2.02 0.00 5.19
621 624 4.778143 ACCAGGAATGCGGCGACC 62.778 66.667 12.98 7.96 0.00 4.79
644 647 4.492160 CGTGGCTCGCGGCTAAGA 62.492 66.667 17.07 0.00 41.46 2.10
645 648 2.583593 GTGGCTCGCGGCTAAGAG 60.584 66.667 17.07 2.89 41.46 2.85
646 649 2.754254 TGGCTCGCGGCTAAGAGA 60.754 61.111 17.07 0.00 41.46 3.10
647 650 2.026879 GGCTCGCGGCTAAGAGAG 59.973 66.667 17.07 2.98 40.33 3.20
648 651 2.482333 GGCTCGCGGCTAAGAGAGA 61.482 63.158 17.07 0.00 39.87 3.10
649 652 1.433879 GCTCGCGGCTAAGAGAGAA 59.566 57.895 6.13 0.00 39.87 2.87
650 653 0.593773 GCTCGCGGCTAAGAGAGAAG 60.594 60.000 6.13 0.00 39.87 2.85
651 654 0.030101 CTCGCGGCTAAGAGAGAAGG 59.970 60.000 6.13 0.00 39.87 3.46
652 655 1.066587 CGCGGCTAAGAGAGAAGGG 59.933 63.158 0.00 0.00 0.00 3.95
653 656 1.443828 GCGGCTAAGAGAGAAGGGG 59.556 63.158 0.00 0.00 0.00 4.79
654 657 1.043673 GCGGCTAAGAGAGAAGGGGA 61.044 60.000 0.00 0.00 0.00 4.81
655 658 1.710816 CGGCTAAGAGAGAAGGGGAT 58.289 55.000 0.00 0.00 0.00 3.85
656 659 2.043227 CGGCTAAGAGAGAAGGGGATT 58.957 52.381 0.00 0.00 0.00 3.01
657 660 2.224161 CGGCTAAGAGAGAAGGGGATTG 60.224 54.545 0.00 0.00 0.00 2.67
658 661 2.105649 GGCTAAGAGAGAAGGGGATTGG 59.894 54.545 0.00 0.00 0.00 3.16
659 662 2.105649 GCTAAGAGAGAAGGGGATTGGG 59.894 54.545 0.00 0.00 0.00 4.12
660 663 1.601248 AAGAGAGAAGGGGATTGGGG 58.399 55.000 0.00 0.00 0.00 4.96
661 664 0.725133 AGAGAGAAGGGGATTGGGGA 59.275 55.000 0.00 0.00 0.00 4.81
662 665 1.082879 AGAGAGAAGGGGATTGGGGAA 59.917 52.381 0.00 0.00 0.00 3.97
663 666 1.923148 GAGAGAAGGGGATTGGGGAAA 59.077 52.381 0.00 0.00 0.00 3.13
664 667 1.925959 AGAGAAGGGGATTGGGGAAAG 59.074 52.381 0.00 0.00 0.00 2.62
665 668 1.923148 GAGAAGGGGATTGGGGAAAGA 59.077 52.381 0.00 0.00 0.00 2.52
666 669 2.311841 GAGAAGGGGATTGGGGAAAGAA 59.688 50.000 0.00 0.00 0.00 2.52
667 670 2.313041 AGAAGGGGATTGGGGAAAGAAG 59.687 50.000 0.00 0.00 0.00 2.85
668 671 2.074922 AGGGGATTGGGGAAAGAAGA 57.925 50.000 0.00 0.00 0.00 2.87
669 672 2.589338 AGGGGATTGGGGAAAGAAGAT 58.411 47.619 0.00 0.00 0.00 2.40
670 673 3.759755 AGGGGATTGGGGAAAGAAGATA 58.240 45.455 0.00 0.00 0.00 1.98
671 674 4.126823 AGGGGATTGGGGAAAGAAGATAA 58.873 43.478 0.00 0.00 0.00 1.75
672 675 4.168871 AGGGGATTGGGGAAAGAAGATAAG 59.831 45.833 0.00 0.00 0.00 1.73
684 687 4.271016 GATAAGGCGGGGGCAGGG 62.271 72.222 0.00 0.00 0.00 4.45
719 722 4.643733 GATGGCCTCGATCGAGTG 57.356 61.111 35.85 28.43 40.44 3.51
720 723 1.006805 GATGGCCTCGATCGAGTGG 60.007 63.158 35.85 26.68 40.44 4.00
721 724 3.157217 ATGGCCTCGATCGAGTGGC 62.157 63.158 35.85 34.37 46.68 5.01
722 725 3.532155 GGCCTCGATCGAGTGGCT 61.532 66.667 34.02 0.00 46.61 4.75
723 726 2.026879 GCCTCGATCGAGTGGCTC 59.973 66.667 35.85 19.17 44.71 4.70
772 775 2.520741 CCCCGGCCACAAACACTT 60.521 61.111 2.24 0.00 0.00 3.16
773 776 2.561037 CCCCGGCCACAAACACTTC 61.561 63.158 2.24 0.00 0.00 3.01
774 777 2.561037 CCCGGCCACAAACACTTCC 61.561 63.158 2.24 0.00 0.00 3.46
775 778 2.561037 CCGGCCACAAACACTTCCC 61.561 63.158 2.24 0.00 0.00 3.97
776 779 1.826054 CGGCCACAAACACTTCCCA 60.826 57.895 2.24 0.00 0.00 4.37
777 780 1.178534 CGGCCACAAACACTTCCCAT 61.179 55.000 2.24 0.00 0.00 4.00
778 781 1.884497 CGGCCACAAACACTTCCCATA 60.884 52.381 2.24 0.00 0.00 2.74
779 782 2.243810 GGCCACAAACACTTCCCATAA 58.756 47.619 0.00 0.00 0.00 1.90
780 783 2.630580 GGCCACAAACACTTCCCATAAA 59.369 45.455 0.00 0.00 0.00 1.40
781 784 3.070302 GGCCACAAACACTTCCCATAAAA 59.930 43.478 0.00 0.00 0.00 1.52
782 785 4.306600 GCCACAAACACTTCCCATAAAAG 58.693 43.478 0.00 0.00 0.00 2.27
783 786 4.038642 GCCACAAACACTTCCCATAAAAGA 59.961 41.667 0.00 0.00 0.00 2.52
784 787 5.452636 GCCACAAACACTTCCCATAAAAGAA 60.453 40.000 0.00 0.00 0.00 2.52
785 788 5.983118 CCACAAACACTTCCCATAAAAGAAC 59.017 40.000 0.00 0.00 0.00 3.01
786 789 5.983118 CACAAACACTTCCCATAAAAGAACC 59.017 40.000 0.00 0.00 0.00 3.62
787 790 5.659079 ACAAACACTTCCCATAAAAGAACCA 59.341 36.000 0.00 0.00 0.00 3.67
791 794 7.703058 ACACTTCCCATAAAAGAACCAATAG 57.297 36.000 0.00 0.00 0.00 1.73
829 832 1.013596 CACCGCGCATTATCTCCAAA 58.986 50.000 8.75 0.00 0.00 3.28
830 833 1.400142 CACCGCGCATTATCTCCAAAA 59.600 47.619 8.75 0.00 0.00 2.44
837 840 4.262976 GCGCATTATCTCCAAAAGAAAACG 59.737 41.667 0.30 0.00 37.61 3.60
1093 1113 2.756283 CCTCTCCTCCTTCGGCGT 60.756 66.667 6.85 0.00 0.00 5.68
1101 1121 4.421479 CCTTCGGCGTCTGCGTCT 62.421 66.667 6.85 0.00 44.10 4.18
1344 1367 8.918202 AGTGAATTACTGTCTCAAATTTACCA 57.082 30.769 0.00 0.00 38.49 3.25
1373 1396 7.348080 TGTAACTGTCGGAAAGATAGATGAT 57.652 36.000 1.27 0.00 40.09 2.45
1375 1398 8.568794 TGTAACTGTCGGAAAGATAGATGATAG 58.431 37.037 1.27 0.00 40.09 2.08
1416 1440 6.697455 CAGTATGTCACTATGTAAGCGTGAAT 59.303 38.462 0.00 0.00 39.16 2.57
1422 1446 9.758651 TGTCACTATGTAAGCGTGAATATTATT 57.241 29.630 0.00 0.00 39.16 1.40
1571 1597 8.885494 TTTTGATTTATTTTTCCCACTGTGAG 57.115 30.769 9.86 0.00 0.00 3.51
1649 1679 4.442375 TCTTTCGAGCTTCTAACCTCTG 57.558 45.455 0.00 0.00 0.00 3.35
1678 1728 1.199789 TGCCGCTGCAAATTTAGACTG 59.800 47.619 0.00 0.00 46.66 3.51
1685 1735 5.166398 GCTGCAAATTTAGACTGCTTGAAT 58.834 37.500 0.00 0.00 37.00 2.57
1686 1736 5.636543 GCTGCAAATTTAGACTGCTTGAATT 59.363 36.000 0.00 0.00 37.00 2.17
1687 1737 6.808212 GCTGCAAATTTAGACTGCTTGAATTA 59.192 34.615 0.00 0.00 37.00 1.40
1688 1738 7.490402 GCTGCAAATTTAGACTGCTTGAATTAT 59.510 33.333 0.00 0.00 37.00 1.28
1689 1739 9.362539 CTGCAAATTTAGACTGCTTGAATTATT 57.637 29.630 1.13 0.00 37.00 1.40
2018 2068 3.790152 AAAGGTACGTCCGATAACCTC 57.210 47.619 5.93 0.00 41.51 3.85
2041 2091 0.250295 TCAAAGTTCTCACCTGGCCG 60.250 55.000 0.00 0.00 0.00 6.13
2051 2101 0.248907 CACCTGGCCGTCGTATGTAG 60.249 60.000 0.00 0.00 0.00 2.74
2052 2102 1.299926 CCTGGCCGTCGTATGTAGC 60.300 63.158 0.00 0.00 0.00 3.58
2053 2103 1.734137 CTGGCCGTCGTATGTAGCT 59.266 57.895 0.00 0.00 0.00 3.32
2167 2221 1.311859 CTCAAGGAACTGCAGTGCAA 58.688 50.000 26.30 7.63 40.86 4.08
2168 2222 1.266175 CTCAAGGAACTGCAGTGCAAG 59.734 52.381 26.30 14.64 40.86 4.01
2170 2224 1.406539 CAAGGAACTGCAGTGCAAGTT 59.593 47.619 26.30 23.90 40.86 2.66
2171 2225 1.312815 AGGAACTGCAGTGCAAGTTC 58.687 50.000 31.26 31.26 41.34 3.01
2173 2227 1.024271 GAACTGCAGTGCAAGTTCCA 58.976 50.000 30.16 8.49 38.94 3.53
2174 2228 1.002033 GAACTGCAGTGCAAGTTCCAG 60.002 52.381 30.16 18.00 38.94 3.86
2175 2229 0.181114 ACTGCAGTGCAAGTTCCAGA 59.819 50.000 20.97 0.00 38.41 3.86
2176 2230 1.202855 ACTGCAGTGCAAGTTCCAGAT 60.203 47.619 20.97 0.00 38.41 2.90
2217 2309 0.251209 GAAGGGTGTCCAAACCTCCC 60.251 60.000 0.00 0.00 40.35 4.30
2296 2401 5.364446 TGCCTGCTGAATCAATTCCAATATT 59.636 36.000 0.48 0.00 35.97 1.28
2382 2487 5.609423 TGTTTACATCTTGCTTGCCAAATT 58.391 33.333 0.00 0.00 31.94 1.82
2414 2519 4.736464 GCAAAACAGTTCCAGGAAATTCGT 60.736 41.667 2.45 0.00 0.00 3.85
2415 2520 4.830826 AAACAGTTCCAGGAAATTCGTC 57.169 40.909 2.45 0.00 0.00 4.20
2417 2522 2.036733 ACAGTTCCAGGAAATTCGTCGA 59.963 45.455 2.45 0.00 0.00 4.20
2418 2523 3.064207 CAGTTCCAGGAAATTCGTCGAA 58.936 45.455 10.61 10.61 0.00 3.71
2419 2524 3.064931 AGTTCCAGGAAATTCGTCGAAC 58.935 45.455 10.39 15.01 34.27 3.95
2420 2525 3.064931 GTTCCAGGAAATTCGTCGAACT 58.935 45.455 10.39 0.00 32.38 3.01
2421 2526 2.683968 TCCAGGAAATTCGTCGAACTG 58.316 47.619 10.39 12.37 0.00 3.16
2422 2527 2.036733 TCCAGGAAATTCGTCGAACTGT 59.963 45.455 10.39 0.00 0.00 3.55
2423 2528 2.806244 CCAGGAAATTCGTCGAACTGTT 59.194 45.455 10.39 5.01 0.00 3.16
2424 2529 3.250040 CCAGGAAATTCGTCGAACTGTTT 59.750 43.478 10.39 7.27 0.00 2.83
2425 2530 4.261031 CCAGGAAATTCGTCGAACTGTTTT 60.261 41.667 10.39 6.90 0.00 2.43
2426 2531 5.270853 CAGGAAATTCGTCGAACTGTTTTT 58.729 37.500 10.39 6.52 0.00 1.94
2427 2532 6.423862 CAGGAAATTCGTCGAACTGTTTTTA 58.576 36.000 10.39 0.00 0.00 1.52
2428 2533 7.075741 CAGGAAATTCGTCGAACTGTTTTTAT 58.924 34.615 10.39 0.00 0.00 1.40
2429 2534 8.225107 CAGGAAATTCGTCGAACTGTTTTTATA 58.775 33.333 10.39 0.00 0.00 0.98
2430 2535 8.225777 AGGAAATTCGTCGAACTGTTTTTATAC 58.774 33.333 10.39 1.80 0.00 1.47
2431 2536 8.225777 GGAAATTCGTCGAACTGTTTTTATACT 58.774 33.333 10.39 0.00 0.00 2.12
2432 2537 9.590088 GAAATTCGTCGAACTGTTTTTATACTT 57.410 29.630 10.39 0.00 0.00 2.24
2433 2538 9.940166 AAATTCGTCGAACTGTTTTTATACTTT 57.060 25.926 10.39 0.00 0.00 2.66
2434 2539 8.928844 ATTCGTCGAACTGTTTTTATACTTTG 57.071 30.769 10.39 0.00 0.00 2.77
2435 2540 6.357198 TCGTCGAACTGTTTTTATACTTTGC 58.643 36.000 0.00 0.00 0.00 3.68
2436 2541 5.562623 CGTCGAACTGTTTTTATACTTTGCC 59.437 40.000 0.00 0.00 0.00 4.52
2437 2542 6.565247 CGTCGAACTGTTTTTATACTTTGCCT 60.565 38.462 0.00 0.00 0.00 4.75
2438 2543 6.795593 GTCGAACTGTTTTTATACTTTGCCTC 59.204 38.462 0.00 0.00 0.00 4.70
2439 2544 6.483974 TCGAACTGTTTTTATACTTTGCCTCA 59.516 34.615 0.00 0.00 0.00 3.86
2440 2545 6.797033 CGAACTGTTTTTATACTTTGCCTCAG 59.203 38.462 0.00 0.00 0.00 3.35
2481 2590 4.142093 TGCTCGATGACAGAGATTCATTCA 60.142 41.667 0.00 0.00 37.93 2.57
2482 2591 4.208873 GCTCGATGACAGAGATTCATTCAC 59.791 45.833 0.00 0.00 37.93 3.18
2498 2607 6.154203 TCATTCACACATAACAGCCAAAAA 57.846 33.333 0.00 0.00 0.00 1.94
2567 2676 6.183360 TGTCAAAGAATGGTCACTTCTGACTA 60.183 38.462 4.57 0.00 45.56 2.59
2605 2999 2.193447 TCGCTGACAATACGCTGATTC 58.807 47.619 0.00 0.00 0.00 2.52
2672 3066 0.255318 CTCCTGCCTTCTTCCAGCAT 59.745 55.000 0.00 0.00 35.64 3.79
2793 3187 5.071370 TCTTCTATCACCGTATCTTCCCTC 58.929 45.833 0.00 0.00 0.00 4.30
2795 3189 5.063017 TCTATCACCGTATCTTCCCTCTT 57.937 43.478 0.00 0.00 0.00 2.85
2908 3302 1.207089 TGCATCCCTACTGTGCACTAC 59.793 52.381 19.41 0.00 43.30 2.73
2909 3303 1.482593 GCATCCCTACTGTGCACTACT 59.517 52.381 19.41 2.52 38.68 2.57
2910 3304 2.093447 GCATCCCTACTGTGCACTACTT 60.093 50.000 19.41 1.87 38.68 2.24
2911 3305 3.786635 CATCCCTACTGTGCACTACTTC 58.213 50.000 19.41 0.00 0.00 3.01
2912 3306 2.176889 TCCCTACTGTGCACTACTTCC 58.823 52.381 19.41 0.00 0.00 3.46
2913 3307 2.180276 CCCTACTGTGCACTACTTCCT 58.820 52.381 19.41 0.00 0.00 3.36
2914 3308 2.166664 CCCTACTGTGCACTACTTCCTC 59.833 54.545 19.41 0.00 0.00 3.71
2915 3309 2.166664 CCTACTGTGCACTACTTCCTCC 59.833 54.545 19.41 0.00 0.00 4.30
2916 3310 0.603569 ACTGTGCACTACTTCCTCCG 59.396 55.000 19.41 0.00 0.00 4.63
2917 3311 0.603569 CTGTGCACTACTTCCTCCGT 59.396 55.000 19.41 0.00 0.00 4.69
2918 3312 1.000955 CTGTGCACTACTTCCTCCGTT 59.999 52.381 19.41 0.00 0.00 4.44
2919 3313 1.000506 TGTGCACTACTTCCTCCGTTC 59.999 52.381 19.41 0.00 0.00 3.95
2920 3314 0.606604 TGCACTACTTCCTCCGTTCC 59.393 55.000 0.00 0.00 0.00 3.62
2921 3315 0.896226 GCACTACTTCCTCCGTTCCT 59.104 55.000 0.00 0.00 0.00 3.36
2922 3316 2.097825 GCACTACTTCCTCCGTTCCTA 58.902 52.381 0.00 0.00 0.00 2.94
2923 3317 2.494870 GCACTACTTCCTCCGTTCCTAA 59.505 50.000 0.00 0.00 0.00 2.69
2924 3318 3.056322 GCACTACTTCCTCCGTTCCTAAA 60.056 47.826 0.00 0.00 0.00 1.85
2925 3319 4.382793 GCACTACTTCCTCCGTTCCTAAAT 60.383 45.833 0.00 0.00 0.00 1.40
2926 3320 5.163478 GCACTACTTCCTCCGTTCCTAAATA 60.163 44.000 0.00 0.00 0.00 1.40
2927 3321 6.462628 GCACTACTTCCTCCGTTCCTAAATAT 60.463 42.308 0.00 0.00 0.00 1.28
2928 3322 7.255730 GCACTACTTCCTCCGTTCCTAAATATA 60.256 40.741 0.00 0.00 0.00 0.86
2929 3323 8.636213 CACTACTTCCTCCGTTCCTAAATATAA 58.364 37.037 0.00 0.00 0.00 0.98
2930 3324 8.858094 ACTACTTCCTCCGTTCCTAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2931 3325 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2932 3326 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
2933 3327 7.564292 ACTTCCTCCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
2934 3328 7.909485 TCCTCCGTTCCTAAATATAAGTCTT 57.091 36.000 0.00 0.00 0.00 3.01
2935 3329 8.315220 TCCTCCGTTCCTAAATATAAGTCTTT 57.685 34.615 0.00 0.00 0.00 2.52
2936 3330 8.765517 TCCTCCGTTCCTAAATATAAGTCTTTT 58.234 33.333 0.00 0.00 0.00 2.27
2937 3331 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
2963 3357 8.912787 AAAGATTTCACTACAGACTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
2964 3358 7.028926 AGATTTCACTACAGACTACATACGG 57.971 40.000 0.00 0.00 0.00 4.02
2965 3359 6.827251 AGATTTCACTACAGACTACATACGGA 59.173 38.462 0.00 0.00 0.00 4.69
2966 3360 6.432607 TTTCACTACAGACTACATACGGAG 57.567 41.667 0.00 0.00 0.00 4.63
2967 3361 3.875727 TCACTACAGACTACATACGGAGC 59.124 47.826 0.00 0.00 0.00 4.70
2968 3362 3.626217 CACTACAGACTACATACGGAGCA 59.374 47.826 0.00 0.00 0.00 4.26
2969 3363 4.095932 CACTACAGACTACATACGGAGCAA 59.904 45.833 0.00 0.00 0.00 3.91
2970 3364 4.703575 ACTACAGACTACATACGGAGCAAA 59.296 41.667 0.00 0.00 0.00 3.68
2971 3365 4.530710 ACAGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2972 3366 5.086104 ACAGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2973 3367 4.870426 ACAGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2974 3368 5.109210 CAGACTACATACGGAGCAAAATGA 58.891 41.667 0.00 0.00 0.00 2.57
2975 3369 5.233050 CAGACTACATACGGAGCAAAATGAG 59.767 44.000 0.00 0.00 0.00 2.90
2976 3370 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2977 3371 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2978 3372 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2979 3373 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2980 3374 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2981 3375 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2982 3376 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2983 3377 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2984 3378 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2985 3379 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
2986 3380 4.494855 GGAGCAAAATGAGTGAATCTACGC 60.495 45.833 0.00 0.00 0.00 4.42
2987 3381 4.256920 AGCAAAATGAGTGAATCTACGCT 58.743 39.130 0.00 0.00 0.00 5.07
2988 3382 4.331168 AGCAAAATGAGTGAATCTACGCTC 59.669 41.667 0.00 0.00 44.55 5.03
2989 3383 4.331168 GCAAAATGAGTGAATCTACGCTCT 59.669 41.667 0.00 0.00 44.58 4.09
2990 3384 5.520288 GCAAAATGAGTGAATCTACGCTCTA 59.480 40.000 0.00 0.00 44.58 2.43
2991 3385 6.036083 GCAAAATGAGTGAATCTACGCTCTAA 59.964 38.462 0.00 0.00 44.58 2.10
2992 3386 7.413000 GCAAAATGAGTGAATCTACGCTCTAAA 60.413 37.037 0.00 0.00 44.58 1.85
2993 3387 8.443160 CAAAATGAGTGAATCTACGCTCTAAAA 58.557 33.333 0.00 0.00 44.58 1.52
2994 3388 8.723942 AAATGAGTGAATCTACGCTCTAAAAT 57.276 30.769 0.00 0.00 44.58 1.82
2995 3389 9.817809 AAATGAGTGAATCTACGCTCTAAAATA 57.182 29.630 0.00 0.00 44.58 1.40
2996 3390 9.988815 AATGAGTGAATCTACGCTCTAAAATAT 57.011 29.630 0.00 0.00 44.58 1.28
2997 3391 8.803201 TGAGTGAATCTACGCTCTAAAATATG 57.197 34.615 0.00 0.00 44.58 1.78
2998 3392 8.414003 TGAGTGAATCTACGCTCTAAAATATGT 58.586 33.333 0.00 0.00 44.58 2.29
2999 3393 8.804688 AGTGAATCTACGCTCTAAAATATGTC 57.195 34.615 0.00 0.00 0.00 3.06
3000 3394 8.634444 AGTGAATCTACGCTCTAAAATATGTCT 58.366 33.333 0.00 0.00 0.00 3.41
3001 3395 9.894783 GTGAATCTACGCTCTAAAATATGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
3030 3424 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
3031 3425 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
3032 3426 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
3033 3427 8.428186 TCCGTATGTAGTTTGTATTGAAATCC 57.572 34.615 0.00 0.00 0.00 3.01
3034 3428 8.262227 TCCGTATGTAGTTTGTATTGAAATCCT 58.738 33.333 0.00 0.00 0.00 3.24
3035 3429 9.537192 CCGTATGTAGTTTGTATTGAAATCCTA 57.463 33.333 0.00 0.00 0.00 2.94
3058 3452 9.694137 CCTAGAAAGACTTATATTTAGGAACGG 57.306 37.037 0.00 0.00 0.00 4.44
3061 3455 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3062 3456 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3063 3457 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3064 3458 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3065 3459 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3066 3460 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3067 3461 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
3068 3462 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
3069 3463 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
3070 3464 2.850695 AGGAACGGAGGGAGTAGAAT 57.149 50.000 0.00 0.00 0.00 2.40
3071 3465 2.668625 AGGAACGGAGGGAGTAGAATC 58.331 52.381 0.00 0.00 0.00 2.52
3072 3466 2.245287 AGGAACGGAGGGAGTAGAATCT 59.755 50.000 0.00 0.00 0.00 2.40
3073 3467 3.462579 AGGAACGGAGGGAGTAGAATCTA 59.537 47.826 0.00 0.00 0.00 1.98
3074 3468 3.822167 GGAACGGAGGGAGTAGAATCTAG 59.178 52.174 0.00 0.00 0.00 2.43
3075 3469 2.866351 ACGGAGGGAGTAGAATCTAGC 58.134 52.381 0.00 0.00 0.00 3.42
3076 3470 1.807742 CGGAGGGAGTAGAATCTAGCG 59.192 57.143 0.00 0.00 0.00 4.26
3077 3471 2.811136 CGGAGGGAGTAGAATCTAGCGT 60.811 54.545 0.00 0.00 0.00 5.07
3078 3472 3.224269 GGAGGGAGTAGAATCTAGCGTT 58.776 50.000 0.00 0.00 0.00 4.84
3079 3473 4.396522 GGAGGGAGTAGAATCTAGCGTTA 58.603 47.826 0.00 0.00 0.00 3.18
3080 3474 4.826183 GGAGGGAGTAGAATCTAGCGTTAA 59.174 45.833 0.00 0.00 0.00 2.01
3081 3475 5.048573 GGAGGGAGTAGAATCTAGCGTTAAG 60.049 48.000 0.00 0.00 0.00 1.85
3082 3476 5.692928 AGGGAGTAGAATCTAGCGTTAAGA 58.307 41.667 0.00 0.00 0.00 2.10
3083 3477 6.127793 AGGGAGTAGAATCTAGCGTTAAGAA 58.872 40.000 0.00 0.00 0.00 2.52
3084 3478 6.039605 AGGGAGTAGAATCTAGCGTTAAGAAC 59.960 42.308 0.00 0.00 0.00 3.01
3085 3479 6.039605 GGGAGTAGAATCTAGCGTTAAGAACT 59.960 42.308 0.00 0.00 0.00 3.01
3086 3480 7.416551 GGGAGTAGAATCTAGCGTTAAGAACTT 60.417 40.741 0.00 0.00 0.00 2.66
3087 3481 7.975058 GGAGTAGAATCTAGCGTTAAGAACTTT 59.025 37.037 0.00 0.00 0.00 2.66
3088 3482 8.690680 AGTAGAATCTAGCGTTAAGAACTTTG 57.309 34.615 0.00 0.00 0.00 2.77
3089 3483 6.410243 AGAATCTAGCGTTAAGAACTTTGC 57.590 37.500 0.00 0.00 0.00 3.68
3090 3484 5.932303 AGAATCTAGCGTTAAGAACTTTGCA 59.068 36.000 0.00 0.00 0.00 4.08
3091 3485 6.426937 AGAATCTAGCGTTAAGAACTTTGCAA 59.573 34.615 0.00 0.00 0.00 4.08
3092 3486 5.994887 TCTAGCGTTAAGAACTTTGCAAA 57.005 34.783 12.14 12.14 0.00 3.68
3093 3487 6.366315 TCTAGCGTTAAGAACTTTGCAAAA 57.634 33.333 13.84 0.00 0.00 2.44
3094 3488 6.966021 TCTAGCGTTAAGAACTTTGCAAAAT 58.034 32.000 13.84 0.00 0.00 1.82
3095 3489 5.888412 AGCGTTAAGAACTTTGCAAAATG 57.112 34.783 13.84 5.08 0.00 2.32
3096 3490 4.209080 AGCGTTAAGAACTTTGCAAAATGC 59.791 37.500 13.84 12.79 45.29 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 4.389077 CCGTTTGATAGAAAAGCTTCGACT 59.611 41.667 0.00 2.31 36.61 4.18
170 172 5.289193 GTGCTACAACCGTCGACATAAAATA 59.711 40.000 17.16 0.00 0.00 1.40
315 318 2.580815 CTGCAGACATGGCGGAGA 59.419 61.111 8.42 0.00 40.08 3.71
353 356 2.494445 CATGGTGACGGCGAGCTA 59.506 61.111 16.62 0.74 0.00 3.32
518 521 1.609239 GTCTGTCATCATGCCCCCA 59.391 57.895 0.00 0.00 0.00 4.96
525 528 2.490991 CATGGATGCGTCTGTCATCAT 58.509 47.619 5.77 0.00 41.46 2.45
526 529 1.473788 CCATGGATGCGTCTGTCATCA 60.474 52.381 5.56 0.00 41.46 3.07
527 530 1.224075 CCATGGATGCGTCTGTCATC 58.776 55.000 5.56 0.00 39.56 2.92
528 531 0.816825 GCCATGGATGCGTCTGTCAT 60.817 55.000 18.40 0.00 0.00 3.06
529 532 1.450134 GCCATGGATGCGTCTGTCA 60.450 57.895 18.40 0.00 0.00 3.58
530 533 2.528743 CGCCATGGATGCGTCTGTC 61.529 63.158 18.40 0.00 46.59 3.51
531 534 2.512286 CGCCATGGATGCGTCTGT 60.512 61.111 18.40 0.00 46.59 3.41
537 540 2.404789 CGTTGTCGCCATGGATGC 59.595 61.111 18.40 4.31 0.00 3.91
538 541 2.472059 CCCGTTGTCGCCATGGATG 61.472 63.158 18.40 7.05 35.54 3.51
539 542 1.983119 ATCCCGTTGTCGCCATGGAT 61.983 55.000 18.40 0.00 32.50 3.41
540 543 2.587322 GATCCCGTTGTCGCCATGGA 62.587 60.000 18.40 0.00 35.54 3.41
541 544 2.124736 ATCCCGTTGTCGCCATGG 60.125 61.111 7.63 7.63 35.54 3.66
542 545 1.153369 AGATCCCGTTGTCGCCATG 60.153 57.895 0.00 0.00 35.54 3.66
543 546 1.153369 CAGATCCCGTTGTCGCCAT 60.153 57.895 0.00 0.00 35.54 4.40
544 547 1.822114 TTCAGATCCCGTTGTCGCCA 61.822 55.000 0.00 0.00 35.54 5.69
545 548 1.079405 TTCAGATCCCGTTGTCGCC 60.079 57.895 0.00 0.00 35.54 5.54
546 549 1.084370 CCTTCAGATCCCGTTGTCGC 61.084 60.000 0.00 0.00 35.54 5.19
547 550 0.530744 TCCTTCAGATCCCGTTGTCG 59.469 55.000 0.00 0.00 0.00 4.35
548 551 1.134670 CCTCCTTCAGATCCCGTTGTC 60.135 57.143 0.00 0.00 0.00 3.18
549 552 0.905357 CCTCCTTCAGATCCCGTTGT 59.095 55.000 0.00 0.00 0.00 3.32
550 553 1.195115 TCCTCCTTCAGATCCCGTTG 58.805 55.000 0.00 0.00 0.00 4.10
551 554 1.834263 CTTCCTCCTTCAGATCCCGTT 59.166 52.381 0.00 0.00 0.00 4.44
552 555 1.007238 TCTTCCTCCTTCAGATCCCGT 59.993 52.381 0.00 0.00 0.00 5.28
553 556 1.410882 GTCTTCCTCCTTCAGATCCCG 59.589 57.143 0.00 0.00 0.00 5.14
554 557 1.765904 GGTCTTCCTCCTTCAGATCCC 59.234 57.143 0.00 0.00 0.00 3.85
555 558 2.433970 CTGGTCTTCCTCCTTCAGATCC 59.566 54.545 0.00 0.00 34.23 3.36
556 559 2.433970 CCTGGTCTTCCTCCTTCAGATC 59.566 54.545 0.00 0.00 34.23 2.75
557 560 2.045047 TCCTGGTCTTCCTCCTTCAGAT 59.955 50.000 0.00 0.00 34.23 2.90
558 561 1.433199 TCCTGGTCTTCCTCCTTCAGA 59.567 52.381 0.00 0.00 34.23 3.27
559 562 1.830477 CTCCTGGTCTTCCTCCTTCAG 59.170 57.143 0.00 0.00 34.23 3.02
560 563 1.944177 CTCCTGGTCTTCCTCCTTCA 58.056 55.000 0.00 0.00 34.23 3.02
561 564 0.539518 GCTCCTGGTCTTCCTCCTTC 59.460 60.000 0.00 0.00 34.23 3.46
562 565 1.261238 CGCTCCTGGTCTTCCTCCTT 61.261 60.000 0.00 0.00 34.23 3.36
563 566 1.684049 CGCTCCTGGTCTTCCTCCT 60.684 63.158 0.00 0.00 34.23 3.69
564 567 2.896443 CGCTCCTGGTCTTCCTCC 59.104 66.667 0.00 0.00 34.23 4.30
565 568 2.185608 GCGCTCCTGGTCTTCCTC 59.814 66.667 0.00 0.00 34.23 3.71
566 569 3.764466 CGCGCTCCTGGTCTTCCT 61.764 66.667 5.56 0.00 34.23 3.36
567 570 4.821589 CCGCGCTCCTGGTCTTCC 62.822 72.222 5.56 0.00 0.00 3.46
571 574 4.874977 GTAGCCGCGCTCCTGGTC 62.875 72.222 5.56 0.00 40.44 4.02
582 585 3.537874 CTCCTTCGGGGGTAGCCG 61.538 72.222 4.56 0.00 35.37 5.52
583 586 3.162154 CCTCCTTCGGGGGTAGCC 61.162 72.222 1.07 1.07 32.44 3.93
584 587 1.687297 CTTCCTCCTTCGGGGGTAGC 61.687 65.000 0.00 0.00 32.44 3.58
585 588 0.032416 TCTTCCTCCTTCGGGGGTAG 60.032 60.000 0.00 0.00 32.44 3.18
586 589 0.325016 GTCTTCCTCCTTCGGGGGTA 60.325 60.000 0.00 0.00 32.44 3.69
587 590 1.612739 GTCTTCCTCCTTCGGGGGT 60.613 63.158 0.00 0.00 32.44 4.95
588 591 2.368011 GGTCTTCCTCCTTCGGGGG 61.368 68.421 0.00 0.00 35.37 5.40
589 592 1.612442 TGGTCTTCCTCCTTCGGGG 60.612 63.158 0.00 0.00 35.37 5.73
590 593 1.617947 CCTGGTCTTCCTCCTTCGGG 61.618 65.000 0.00 0.00 34.23 5.14
591 594 0.614979 TCCTGGTCTTCCTCCTTCGG 60.615 60.000 0.00 0.00 34.23 4.30
592 595 1.267121 TTCCTGGTCTTCCTCCTTCG 58.733 55.000 0.00 0.00 34.23 3.79
593 596 2.682269 GCATTCCTGGTCTTCCTCCTTC 60.682 54.545 0.00 0.00 34.23 3.46
594 597 1.283321 GCATTCCTGGTCTTCCTCCTT 59.717 52.381 0.00 0.00 34.23 3.36
595 598 0.915364 GCATTCCTGGTCTTCCTCCT 59.085 55.000 0.00 0.00 34.23 3.69
596 599 0.462759 CGCATTCCTGGTCTTCCTCC 60.463 60.000 0.00 0.00 34.23 4.30
597 600 0.462759 CCGCATTCCTGGTCTTCCTC 60.463 60.000 0.00 0.00 34.23 3.71
598 601 1.604378 CCGCATTCCTGGTCTTCCT 59.396 57.895 0.00 0.00 34.23 3.36
599 602 2.115291 GCCGCATTCCTGGTCTTCC 61.115 63.158 0.00 0.00 0.00 3.46
600 603 2.464459 CGCCGCATTCCTGGTCTTC 61.464 63.158 0.00 0.00 0.00 2.87
601 604 2.436646 CGCCGCATTCCTGGTCTT 60.437 61.111 0.00 0.00 0.00 3.01
602 605 3.390521 TCGCCGCATTCCTGGTCT 61.391 61.111 0.00 0.00 0.00 3.85
603 606 3.195698 GTCGCCGCATTCCTGGTC 61.196 66.667 0.00 0.00 0.00 4.02
604 607 4.778143 GGTCGCCGCATTCCTGGT 62.778 66.667 0.00 0.00 0.00 4.00
627 630 4.492160 TCTTAGCCGCGAGCCACG 62.492 66.667 8.23 0.00 45.47 4.94
628 631 2.583593 CTCTTAGCCGCGAGCCAC 60.584 66.667 8.23 0.00 45.47 5.01
629 632 2.754254 TCTCTTAGCCGCGAGCCA 60.754 61.111 8.23 0.00 45.47 4.75
630 633 2.005960 TTCTCTCTTAGCCGCGAGCC 62.006 60.000 8.23 0.00 45.47 4.70
631 634 0.593773 CTTCTCTCTTAGCCGCGAGC 60.594 60.000 8.23 9.98 44.25 5.03
632 635 0.030101 CCTTCTCTCTTAGCCGCGAG 59.970 60.000 8.23 0.00 0.00 5.03
633 636 1.384989 CCCTTCTCTCTTAGCCGCGA 61.385 60.000 8.23 0.00 0.00 5.87
634 637 1.066587 CCCTTCTCTCTTAGCCGCG 59.933 63.158 0.00 0.00 0.00 6.46
635 638 1.043673 TCCCCTTCTCTCTTAGCCGC 61.044 60.000 0.00 0.00 0.00 6.53
636 639 1.710816 ATCCCCTTCTCTCTTAGCCG 58.289 55.000 0.00 0.00 0.00 5.52
637 640 2.105649 CCAATCCCCTTCTCTCTTAGCC 59.894 54.545 0.00 0.00 0.00 3.93
638 641 2.105649 CCCAATCCCCTTCTCTCTTAGC 59.894 54.545 0.00 0.00 0.00 3.09
639 642 2.708325 CCCCAATCCCCTTCTCTCTTAG 59.292 54.545 0.00 0.00 0.00 2.18
640 643 2.320986 TCCCCAATCCCCTTCTCTCTTA 59.679 50.000 0.00 0.00 0.00 2.10
641 644 1.082879 TCCCCAATCCCCTTCTCTCTT 59.917 52.381 0.00 0.00 0.00 2.85
642 645 0.725133 TCCCCAATCCCCTTCTCTCT 59.275 55.000 0.00 0.00 0.00 3.10
643 646 1.596496 TTCCCCAATCCCCTTCTCTC 58.404 55.000 0.00 0.00 0.00 3.20
644 647 1.925959 CTTTCCCCAATCCCCTTCTCT 59.074 52.381 0.00 0.00 0.00 3.10
645 648 1.923148 TCTTTCCCCAATCCCCTTCTC 59.077 52.381 0.00 0.00 0.00 2.87
646 649 2.074922 TCTTTCCCCAATCCCCTTCT 57.925 50.000 0.00 0.00 0.00 2.85
647 650 2.311841 TCTTCTTTCCCCAATCCCCTTC 59.688 50.000 0.00 0.00 0.00 3.46
648 651 2.368170 TCTTCTTTCCCCAATCCCCTT 58.632 47.619 0.00 0.00 0.00 3.95
649 652 2.074922 TCTTCTTTCCCCAATCCCCT 57.925 50.000 0.00 0.00 0.00 4.79
650 653 4.474394 CTTATCTTCTTTCCCCAATCCCC 58.526 47.826 0.00 0.00 0.00 4.81
651 654 4.474394 CCTTATCTTCTTTCCCCAATCCC 58.526 47.826 0.00 0.00 0.00 3.85
652 655 3.891977 GCCTTATCTTCTTTCCCCAATCC 59.108 47.826 0.00 0.00 0.00 3.01
653 656 3.565902 CGCCTTATCTTCTTTCCCCAATC 59.434 47.826 0.00 0.00 0.00 2.67
654 657 3.555966 CGCCTTATCTTCTTTCCCCAAT 58.444 45.455 0.00 0.00 0.00 3.16
655 658 2.356741 CCGCCTTATCTTCTTTCCCCAA 60.357 50.000 0.00 0.00 0.00 4.12
656 659 1.211949 CCGCCTTATCTTCTTTCCCCA 59.788 52.381 0.00 0.00 0.00 4.96
657 660 1.477014 CCCGCCTTATCTTCTTTCCCC 60.477 57.143 0.00 0.00 0.00 4.81
658 661 1.477014 CCCCGCCTTATCTTCTTTCCC 60.477 57.143 0.00 0.00 0.00 3.97
659 662 1.477014 CCCCCGCCTTATCTTCTTTCC 60.477 57.143 0.00 0.00 0.00 3.13
660 663 1.968704 CCCCCGCCTTATCTTCTTTC 58.031 55.000 0.00 0.00 0.00 2.62
661 664 0.106669 GCCCCCGCCTTATCTTCTTT 60.107 55.000 0.00 0.00 0.00 2.52
662 665 1.279025 TGCCCCCGCCTTATCTTCTT 61.279 55.000 0.00 0.00 0.00 2.52
663 666 1.692749 TGCCCCCGCCTTATCTTCT 60.693 57.895 0.00 0.00 0.00 2.85
664 667 1.227973 CTGCCCCCGCCTTATCTTC 60.228 63.158 0.00 0.00 0.00 2.87
665 668 2.757124 CCTGCCCCCGCCTTATCTT 61.757 63.158 0.00 0.00 0.00 2.40
666 669 3.171388 CCTGCCCCCGCCTTATCT 61.171 66.667 0.00 0.00 0.00 1.98
667 670 4.271016 CCCTGCCCCCGCCTTATC 62.271 72.222 0.00 0.00 0.00 1.75
702 705 1.006805 CCACTCGATCGAGGCCATC 60.007 63.158 39.70 0.00 45.88 3.51
703 706 3.133014 CCACTCGATCGAGGCCAT 58.867 61.111 39.70 22.27 45.88 4.40
704 707 3.838271 GCCACTCGATCGAGGCCA 61.838 66.667 39.70 11.44 45.88 5.36
705 708 3.492311 GAGCCACTCGATCGAGGCC 62.492 68.421 39.70 28.43 45.88 5.19
706 709 2.026879 GAGCCACTCGATCGAGGC 59.973 66.667 39.70 35.16 45.88 4.70
755 758 2.520741 AAGTGTTTGTGGCCGGGG 60.521 61.111 2.18 0.00 0.00 5.73
756 759 2.561037 GGAAGTGTTTGTGGCCGGG 61.561 63.158 2.18 0.00 0.00 5.73
757 760 2.561037 GGGAAGTGTTTGTGGCCGG 61.561 63.158 0.00 0.00 0.00 6.13
758 761 1.178534 ATGGGAAGTGTTTGTGGCCG 61.179 55.000 0.00 0.00 0.00 6.13
759 762 1.917872 TATGGGAAGTGTTTGTGGCC 58.082 50.000 0.00 0.00 0.00 5.36
760 763 4.038642 TCTTTTATGGGAAGTGTTTGTGGC 59.961 41.667 0.00 0.00 0.00 5.01
761 764 5.782893 TCTTTTATGGGAAGTGTTTGTGG 57.217 39.130 0.00 0.00 0.00 4.17
762 765 5.983118 GGTTCTTTTATGGGAAGTGTTTGTG 59.017 40.000 0.00 0.00 0.00 3.33
763 766 5.659079 TGGTTCTTTTATGGGAAGTGTTTGT 59.341 36.000 0.00 0.00 0.00 2.83
764 767 6.155475 TGGTTCTTTTATGGGAAGTGTTTG 57.845 37.500 0.00 0.00 0.00 2.93
765 768 6.800072 TTGGTTCTTTTATGGGAAGTGTTT 57.200 33.333 0.00 0.00 0.00 2.83
766 769 6.994421 ATTGGTTCTTTTATGGGAAGTGTT 57.006 33.333 0.00 0.00 0.00 3.32
767 770 7.466804 TCTATTGGTTCTTTTATGGGAAGTGT 58.533 34.615 0.00 0.00 0.00 3.55
768 771 7.938140 TCTATTGGTTCTTTTATGGGAAGTG 57.062 36.000 0.00 0.00 0.00 3.16
769 772 9.190317 GATTCTATTGGTTCTTTTATGGGAAGT 57.810 33.333 0.00 0.00 0.00 3.01
770 773 8.345565 CGATTCTATTGGTTCTTTTATGGGAAG 58.654 37.037 0.00 0.00 0.00 3.46
771 774 7.832187 ACGATTCTATTGGTTCTTTTATGGGAA 59.168 33.333 0.00 0.00 0.00 3.97
772 775 7.343357 ACGATTCTATTGGTTCTTTTATGGGA 58.657 34.615 0.00 0.00 0.00 4.37
773 776 7.568199 ACGATTCTATTGGTTCTTTTATGGG 57.432 36.000 0.00 0.00 0.00 4.00
774 777 8.774586 CCTACGATTCTATTGGTTCTTTTATGG 58.225 37.037 0.00 0.00 0.00 2.74
775 778 9.542462 TCCTACGATTCTATTGGTTCTTTTATG 57.458 33.333 0.00 0.00 0.00 1.90
776 779 9.765795 CTCCTACGATTCTATTGGTTCTTTTAT 57.234 33.333 0.00 0.00 0.00 1.40
777 780 7.709613 GCTCCTACGATTCTATTGGTTCTTTTA 59.290 37.037 0.00 0.00 0.00 1.52
778 781 6.539103 GCTCCTACGATTCTATTGGTTCTTTT 59.461 38.462 0.00 0.00 0.00 2.27
779 782 6.049790 GCTCCTACGATTCTATTGGTTCTTT 58.950 40.000 0.00 0.00 0.00 2.52
780 783 5.128827 TGCTCCTACGATTCTATTGGTTCTT 59.871 40.000 0.00 0.00 0.00 2.52
781 784 4.649674 TGCTCCTACGATTCTATTGGTTCT 59.350 41.667 0.00 0.00 0.00 3.01
782 785 4.945246 TGCTCCTACGATTCTATTGGTTC 58.055 43.478 0.00 0.00 0.00 3.62
783 786 4.740934 GCTGCTCCTACGATTCTATTGGTT 60.741 45.833 0.00 0.00 0.00 3.67
784 787 3.243907 GCTGCTCCTACGATTCTATTGGT 60.244 47.826 0.00 0.00 0.00 3.67
785 788 3.243873 TGCTGCTCCTACGATTCTATTGG 60.244 47.826 0.00 0.00 0.00 3.16
786 789 3.738282 GTGCTGCTCCTACGATTCTATTG 59.262 47.826 0.00 0.00 0.00 1.90
787 790 3.243907 GGTGCTGCTCCTACGATTCTATT 60.244 47.826 13.24 0.00 0.00 1.73
791 794 0.530870 GGGTGCTGCTCCTACGATTC 60.531 60.000 19.07 0.00 0.00 2.52
829 832 1.671379 GAGGAGGCCGCGTTTTCTT 60.671 57.895 4.92 0.00 0.00 2.52
830 833 2.047179 GAGGAGGCCGCGTTTTCT 60.047 61.111 4.92 0.00 0.00 2.52
1093 1113 2.999485 GCAGCAGAGGAGACGCAGA 61.999 63.158 0.00 0.00 0.00 4.26
1146 1166 2.119655 GGATGAGCTGCAGGCAAGG 61.120 63.158 17.12 0.00 44.79 3.61
1278 1301 1.747444 ACCTGAAGTTGGGGTCATCT 58.253 50.000 0.00 0.00 0.00 2.90
1344 1367 4.002906 TCTTTCCGACAGTTACATGCTT 57.997 40.909 0.00 0.00 0.00 3.91
1373 1396 9.098355 GACATACTGACATGCTGAATAAAACTA 57.902 33.333 0.00 0.00 0.00 2.24
1375 1398 7.693951 GTGACATACTGACATGCTGAATAAAAC 59.306 37.037 0.00 0.00 0.00 2.43
1383 1406 5.354767 ACATAGTGACATACTGACATGCTG 58.645 41.667 0.00 0.00 40.65 4.41
1431 1455 8.437360 TGTTGATGCGAAATAGAACATAATCT 57.563 30.769 0.00 0.00 0.00 2.40
1442 1466 5.047731 TGGAACCATTTGTTGATGCGAAATA 60.048 36.000 0.00 0.00 37.29 1.40
1444 1468 3.068732 TGGAACCATTTGTTGATGCGAAA 59.931 39.130 0.00 0.00 37.29 3.46
1445 1469 2.625314 TGGAACCATTTGTTGATGCGAA 59.375 40.909 0.00 0.00 37.29 4.70
1561 1587 2.814280 AAACGTACTCTCACAGTGGG 57.186 50.000 0.00 0.00 36.43 4.61
1571 1597 5.572126 GTGGTCTCAGTCAATAAACGTACTC 59.428 44.000 0.00 0.00 0.00 2.59
1702 1752 7.582719 AGCACCCTATATAAATCCAACTGAAA 58.417 34.615 0.00 0.00 0.00 2.69
1703 1753 7.149202 AGCACCCTATATAAATCCAACTGAA 57.851 36.000 0.00 0.00 0.00 3.02
1722 1772 0.741915 TGTTTGAAACCGGAAGCACC 59.258 50.000 9.46 0.00 0.00 5.01
2018 2068 2.746362 GCCAGGTGAGAACTTTGATGAG 59.254 50.000 0.00 0.00 0.00 2.90
2096 2150 4.768968 CAGTTCCTTGAGGTGGATCATTTT 59.231 41.667 0.00 0.00 36.34 1.82
2167 2221 2.158475 TGGCCAAGTCAAATCTGGAACT 60.158 45.455 0.61 0.00 0.00 3.01
2168 2222 2.238521 TGGCCAAGTCAAATCTGGAAC 58.761 47.619 0.61 0.00 0.00 3.62
2170 2224 2.225091 ACATGGCCAAGTCAAATCTGGA 60.225 45.455 10.96 0.00 0.00 3.86
2171 2225 2.094390 CACATGGCCAAGTCAAATCTGG 60.094 50.000 10.96 0.00 0.00 3.86
2173 2227 1.547372 GCACATGGCCAAGTCAAATCT 59.453 47.619 10.96 0.00 36.11 2.40
2174 2228 1.547372 AGCACATGGCCAAGTCAAATC 59.453 47.619 10.96 0.00 46.50 2.17
2175 2229 1.274167 CAGCACATGGCCAAGTCAAAT 59.726 47.619 10.96 0.00 46.50 2.32
2176 2230 0.675083 CAGCACATGGCCAAGTCAAA 59.325 50.000 10.96 0.00 46.50 2.69
2203 2288 2.586648 AATCTGGGAGGTTTGGACAC 57.413 50.000 0.00 0.00 0.00 3.67
2217 2309 5.810525 ACGTCAAGACTGAAACAAAATCTG 58.189 37.500 0.00 0.00 31.88 2.90
2296 2401 3.311106 CGGAGCTACGTACAAAACTTCA 58.689 45.455 11.15 0.00 0.00 3.02
2382 2487 3.821600 TGGAACTGTTTTGCCGCTATTAA 59.178 39.130 0.00 0.00 0.00 1.40
2414 2519 6.483974 TGAGGCAAAGTATAAAAACAGTTCGA 59.516 34.615 0.00 0.00 0.00 3.71
2415 2520 6.664515 TGAGGCAAAGTATAAAAACAGTTCG 58.335 36.000 0.00 0.00 0.00 3.95
2417 2522 6.447162 GCTGAGGCAAAGTATAAAAACAGTT 58.553 36.000 0.00 0.00 38.54 3.16
2418 2523 5.048013 GGCTGAGGCAAAGTATAAAAACAGT 60.048 40.000 0.00 0.00 40.87 3.55
2419 2524 5.183904 AGGCTGAGGCAAAGTATAAAAACAG 59.816 40.000 9.23 0.00 40.87 3.16
2420 2525 5.076873 AGGCTGAGGCAAAGTATAAAAACA 58.923 37.500 9.23 0.00 40.87 2.83
2421 2526 5.644977 AGGCTGAGGCAAAGTATAAAAAC 57.355 39.130 9.23 0.00 40.87 2.43
2422 2527 6.664428 AAAGGCTGAGGCAAAGTATAAAAA 57.336 33.333 9.23 0.00 40.87 1.94
2423 2528 6.664428 AAAAGGCTGAGGCAAAGTATAAAA 57.336 33.333 9.23 0.00 40.87 1.52
2424 2529 6.266558 TCAAAAAGGCTGAGGCAAAGTATAAA 59.733 34.615 9.23 0.00 40.87 1.40
2425 2530 5.772672 TCAAAAAGGCTGAGGCAAAGTATAA 59.227 36.000 9.23 0.00 40.87 0.98
2426 2531 5.321102 TCAAAAAGGCTGAGGCAAAGTATA 58.679 37.500 9.23 0.00 40.87 1.47
2427 2532 4.151883 TCAAAAAGGCTGAGGCAAAGTAT 58.848 39.130 9.23 0.00 40.87 2.12
2428 2533 3.561143 TCAAAAAGGCTGAGGCAAAGTA 58.439 40.909 9.23 0.00 40.87 2.24
2429 2534 2.363359 CTCAAAAAGGCTGAGGCAAAGT 59.637 45.455 9.23 0.00 40.87 2.66
2430 2535 2.363359 ACTCAAAAAGGCTGAGGCAAAG 59.637 45.455 9.23 0.00 43.88 2.77
2431 2536 2.387757 ACTCAAAAAGGCTGAGGCAAA 58.612 42.857 9.23 0.00 43.88 3.68
2432 2537 2.071778 ACTCAAAAAGGCTGAGGCAA 57.928 45.000 9.23 0.00 43.88 4.52
2433 2538 2.071778 AACTCAAAAAGGCTGAGGCA 57.928 45.000 9.23 0.00 43.88 4.75
2434 2539 2.288457 GGAAACTCAAAAAGGCTGAGGC 60.288 50.000 0.00 0.00 43.88 4.70
2435 2540 2.958355 TGGAAACTCAAAAAGGCTGAGG 59.042 45.455 6.46 0.00 43.88 3.86
2436 2541 3.633986 AGTGGAAACTCAAAAAGGCTGAG 59.366 43.478 0.00 0.00 44.90 3.35
2437 2542 3.381272 CAGTGGAAACTCAAAAAGGCTGA 59.619 43.478 0.00 0.00 0.00 4.26
2438 2543 3.709987 CAGTGGAAACTCAAAAAGGCTG 58.290 45.455 0.00 0.00 0.00 4.85
2439 2544 2.101415 GCAGTGGAAACTCAAAAAGGCT 59.899 45.455 0.00 0.00 0.00 4.58
2440 2545 2.101415 AGCAGTGGAAACTCAAAAAGGC 59.899 45.455 0.00 0.00 0.00 4.35
2498 2607 1.203237 TGGTGGTTACATGGGCCAATT 60.203 47.619 11.89 2.20 33.66 2.32
2500 2609 0.251564 CTGGTGGTTACATGGGCCAA 60.252 55.000 11.89 0.00 33.66 4.52
2605 2999 5.121611 TGCTTGTAGGAAACATGATGTAACG 59.878 40.000 0.00 0.00 38.10 3.18
2672 3066 5.097742 TCTGTTTCACTTCTGAACCTTCA 57.902 39.130 0.00 0.00 36.06 3.02
2793 3187 5.230942 AGTCCTTTTGTGTATCTCGTCAAG 58.769 41.667 0.00 0.00 0.00 3.02
2795 3189 4.866508 AGTCCTTTTGTGTATCTCGTCA 57.133 40.909 0.00 0.00 0.00 4.35
2908 3302 7.953752 AGACTTATATTTAGGAACGGAGGAAG 58.046 38.462 0.00 0.00 0.00 3.46
2909 3303 7.909485 AGACTTATATTTAGGAACGGAGGAA 57.091 36.000 0.00 0.00 0.00 3.36
2910 3304 7.909485 AAGACTTATATTTAGGAACGGAGGA 57.091 36.000 0.00 0.00 0.00 3.71
2911 3305 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2937 3331 9.999009 CGTATGTAGTCTGTAGTGAAATCTTTA 57.001 33.333 0.00 0.00 0.00 1.85
2938 3332 7.974501 CCGTATGTAGTCTGTAGTGAAATCTTT 59.025 37.037 0.00 0.00 0.00 2.52
2939 3333 7.338703 TCCGTATGTAGTCTGTAGTGAAATCTT 59.661 37.037 0.00 0.00 0.00 2.40
2940 3334 6.827251 TCCGTATGTAGTCTGTAGTGAAATCT 59.173 38.462 0.00 0.00 0.00 2.40
2941 3335 7.024340 TCCGTATGTAGTCTGTAGTGAAATC 57.976 40.000 0.00 0.00 0.00 2.17
2942 3336 6.459848 GCTCCGTATGTAGTCTGTAGTGAAAT 60.460 42.308 0.00 0.00 0.00 2.17
2943 3337 5.163683 GCTCCGTATGTAGTCTGTAGTGAAA 60.164 44.000 0.00 0.00 0.00 2.69
2944 3338 4.334759 GCTCCGTATGTAGTCTGTAGTGAA 59.665 45.833 0.00 0.00 0.00 3.18
2945 3339 3.875727 GCTCCGTATGTAGTCTGTAGTGA 59.124 47.826 0.00 0.00 0.00 3.41
2946 3340 3.626217 TGCTCCGTATGTAGTCTGTAGTG 59.374 47.826 0.00 0.00 0.00 2.74
2947 3341 3.882444 TGCTCCGTATGTAGTCTGTAGT 58.118 45.455 0.00 0.00 0.00 2.73
2948 3342 4.895224 TTGCTCCGTATGTAGTCTGTAG 57.105 45.455 0.00 0.00 0.00 2.74
2949 3343 5.648178 TTTTGCTCCGTATGTAGTCTGTA 57.352 39.130 0.00 0.00 0.00 2.74
2950 3344 4.530710 TTTTGCTCCGTATGTAGTCTGT 57.469 40.909 0.00 0.00 0.00 3.41
2951 3345 5.109210 TCATTTTGCTCCGTATGTAGTCTG 58.891 41.667 0.00 0.00 0.00 3.51
2952 3346 5.105310 ACTCATTTTGCTCCGTATGTAGTCT 60.105 40.000 0.00 0.00 0.00 3.24
2953 3347 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2954 3348 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2955 3349 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2956 3350 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2957 3351 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2958 3352 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2959 3353 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2960 3354 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2961 3355 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2962 3356 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
2963 3357 4.494855 GCGTAGATTCACTCATTTTGCTCC 60.495 45.833 0.00 0.00 0.00 4.70
2964 3358 4.331168 AGCGTAGATTCACTCATTTTGCTC 59.669 41.667 0.00 0.00 0.00 4.26
2965 3359 4.256920 AGCGTAGATTCACTCATTTTGCT 58.743 39.130 0.00 0.00 0.00 3.91
2966 3360 4.331168 AGAGCGTAGATTCACTCATTTTGC 59.669 41.667 0.00 0.00 0.00 3.68
2967 3361 7.525688 TTAGAGCGTAGATTCACTCATTTTG 57.474 36.000 0.00 0.00 0.00 2.44
2968 3362 8.547967 TTTTAGAGCGTAGATTCACTCATTTT 57.452 30.769 0.00 0.00 0.00 1.82
2969 3363 8.723942 ATTTTAGAGCGTAGATTCACTCATTT 57.276 30.769 0.00 0.00 0.00 2.32
2970 3364 9.988815 ATATTTTAGAGCGTAGATTCACTCATT 57.011 29.630 0.00 0.00 0.00 2.57
2971 3365 9.416794 CATATTTTAGAGCGTAGATTCACTCAT 57.583 33.333 0.00 0.00 0.00 2.90
2972 3366 8.414003 ACATATTTTAGAGCGTAGATTCACTCA 58.586 33.333 0.00 0.00 0.00 3.41
2973 3367 8.804688 ACATATTTTAGAGCGTAGATTCACTC 57.195 34.615 0.00 0.00 0.00 3.51
2974 3368 8.634444 AGACATATTTTAGAGCGTAGATTCACT 58.366 33.333 0.00 0.00 0.00 3.41
2975 3369 8.804688 AGACATATTTTAGAGCGTAGATTCAC 57.195 34.615 0.00 0.00 0.00 3.18
3004 3398 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
3006 3400 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
3007 3401 9.052759 GGATTTCAATACAAACTACATACGGAT 57.947 33.333 0.00 0.00 0.00 4.18
3008 3402 8.262227 AGGATTTCAATACAAACTACATACGGA 58.738 33.333 0.00 0.00 0.00 4.69
3009 3403 8.433421 AGGATTTCAATACAAACTACATACGG 57.567 34.615 0.00 0.00 0.00 4.02
3032 3426 9.694137 CCGTTCCTAAATATAAGTCTTTCTAGG 57.306 37.037 0.00 0.00 0.00 3.02
3035 3429 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
3036 3430 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3037 3431 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3038 3432 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3039 3433 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3040 3434 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3041 3435 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3042 3436 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3043 3437 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3044 3438 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3045 3439 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3046 3440 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3047 3441 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3048 3442 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3049 3443 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
3050 3444 3.462579 AGATTCTACTCCCTCCGTTCCTA 59.537 47.826 0.00 0.00 0.00 2.94
3051 3445 2.245287 AGATTCTACTCCCTCCGTTCCT 59.755 50.000 0.00 0.00 0.00 3.36
3052 3446 2.668625 AGATTCTACTCCCTCCGTTCC 58.331 52.381 0.00 0.00 0.00 3.62
3053 3447 3.253921 GCTAGATTCTACTCCCTCCGTTC 59.746 52.174 0.00 0.00 0.00 3.95
3054 3448 3.224269 GCTAGATTCTACTCCCTCCGTT 58.776 50.000 0.00 0.00 0.00 4.44
3055 3449 2.811136 CGCTAGATTCTACTCCCTCCGT 60.811 54.545 0.00 0.00 0.00 4.69
3056 3450 1.807742 CGCTAGATTCTACTCCCTCCG 59.192 57.143 0.00 0.00 0.00 4.63
3057 3451 2.866351 ACGCTAGATTCTACTCCCTCC 58.134 52.381 0.00 0.00 0.00 4.30
3058 3452 5.764192 TCTTAACGCTAGATTCTACTCCCTC 59.236 44.000 0.00 0.00 0.00 4.30
3059 3453 5.692928 TCTTAACGCTAGATTCTACTCCCT 58.307 41.667 0.00 0.00 0.00 4.20
3060 3454 6.039605 AGTTCTTAACGCTAGATTCTACTCCC 59.960 42.308 0.00 0.00 36.23 4.30
3061 3455 7.030075 AGTTCTTAACGCTAGATTCTACTCC 57.970 40.000 0.00 0.00 36.23 3.85
3062 3456 8.800031 CAAAGTTCTTAACGCTAGATTCTACTC 58.200 37.037 0.00 0.00 36.23 2.59
3063 3457 7.275999 GCAAAGTTCTTAACGCTAGATTCTACT 59.724 37.037 0.00 0.00 36.23 2.57
3064 3458 7.063074 TGCAAAGTTCTTAACGCTAGATTCTAC 59.937 37.037 0.00 0.00 36.23 2.59
3065 3459 7.094631 TGCAAAGTTCTTAACGCTAGATTCTA 58.905 34.615 0.00 0.00 36.23 2.10
3066 3460 5.932303 TGCAAAGTTCTTAACGCTAGATTCT 59.068 36.000 0.00 0.00 36.23 2.40
3067 3461 6.165659 TGCAAAGTTCTTAACGCTAGATTC 57.834 37.500 0.00 0.00 36.23 2.52
3068 3462 6.554334 TTGCAAAGTTCTTAACGCTAGATT 57.446 33.333 0.00 0.00 36.23 2.40
3069 3463 6.554334 TTTGCAAAGTTCTTAACGCTAGAT 57.446 33.333 8.05 0.00 36.23 1.98
3070 3464 5.994887 TTTGCAAAGTTCTTAACGCTAGA 57.005 34.783 8.05 0.00 36.23 2.43
3071 3465 6.398935 GCATTTTGCAAAGTTCTTAACGCTAG 60.399 38.462 12.41 0.00 44.26 3.42
3072 3466 5.401079 GCATTTTGCAAAGTTCTTAACGCTA 59.599 36.000 12.41 0.00 44.26 4.26
3073 3467 4.209080 GCATTTTGCAAAGTTCTTAACGCT 59.791 37.500 12.41 0.00 44.26 5.07
3074 3468 4.445351 GCATTTTGCAAAGTTCTTAACGC 58.555 39.130 12.41 3.74 44.26 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.