Multiple sequence alignment - TraesCS3D01G165700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G165700 chr3D 100.000 6280 0 0 1 6280 137629080 137635359 0.000000e+00 11598.0
1 TraesCS3D01G165700 chr3D 95.483 3055 103 20 1104 4151 157825140 157828166 0.000000e+00 4844.0
2 TraesCS3D01G165700 chr3D 95.760 2146 70 7 4147 6280 157833005 157835141 0.000000e+00 3439.0
3 TraesCS3D01G165700 chr3D 95.833 48 2 0 506 553 590531988 590532035 1.880000e-10 78.7
4 TraesCS3D01G165700 chr2A 97.410 4981 60 19 1304 6280 431666046 431661131 0.000000e+00 8419.0
5 TraesCS3D01G165700 chr2A 98.237 624 9 2 706 1329 431666708 431666087 0.000000e+00 1090.0
6 TraesCS3D01G165700 chr2A 88.028 284 34 0 2022 2305 396400411 396400694 2.800000e-88 337.0
7 TraesCS3D01G165700 chr2A 80.000 220 33 7 4233 4451 47872321 47872530 1.090000e-32 152.0
8 TraesCS3D01G165700 chr2B 95.144 5313 203 27 987 6280 231299141 231293865 0.000000e+00 8331.0
9 TraesCS3D01G165700 chr2B 88.966 435 44 4 557 991 231301143 231300713 9.270000e-148 534.0
10 TraesCS3D01G165700 chr2B 83.027 489 55 13 2520 2994 269363113 269363587 9.740000e-113 418.0
11 TraesCS3D01G165700 chr2B 78.810 420 66 17 4892 5295 69134162 69134574 1.740000e-65 261.0
12 TraesCS3D01G165700 chr2B 78.182 220 37 7 4233 4451 69131430 69131639 5.110000e-26 130.0
13 TraesCS3D01G165700 chr2B 93.023 86 6 0 4224 4309 410265944 410266029 6.610000e-25 126.0
14 TraesCS3D01G165700 chr5D 97.822 3765 58 11 1103 4851 270486298 270490054 0.000000e+00 6477.0
15 TraesCS3D01G165700 chr5D 97.679 1379 25 4 4905 6280 270532658 270534032 0.000000e+00 2362.0
16 TraesCS3D01G165700 chr5D 98.387 62 1 0 4849 4910 270523881 270523942 6.660000e-20 110.0
17 TraesCS3D01G165700 chr5D 92.453 53 3 1 508 559 127877777 127877829 2.430000e-09 75.0
18 TraesCS3D01G165700 chr5A 97.760 2902 48 6 3386 6280 294710978 294713869 0.000000e+00 4983.0
19 TraesCS3D01G165700 chr5A 97.462 2719 47 9 557 3269 294708257 294710959 0.000000e+00 4619.0
20 TraesCS3D01G165700 chr5A 87.748 302 33 3 1531 1831 345359957 345359659 3.600000e-92 350.0
21 TraesCS3D01G165700 chr6B 94.187 3062 129 26 557 3601 195458581 195461610 0.000000e+00 4623.0
22 TraesCS3D01G165700 chr6B 95.766 685 23 2 5602 6280 201227326 201228010 0.000000e+00 1099.0
23 TraesCS3D01G165700 chr6B 95.182 685 22 3 5602 6280 195465221 195465900 0.000000e+00 1072.0
24 TraesCS3D01G165700 chr6B 90.756 238 21 1 2 239 254358226 254358462 3.650000e-82 316.0
25 TraesCS3D01G165700 chr6B 87.121 132 16 1 2863 2994 611343351 611343221 1.410000e-31 148.0
26 TraesCS3D01G165700 chr6A 96.218 2644 74 10 3638 6280 362140869 362138251 0.000000e+00 4305.0
27 TraesCS3D01G165700 chr6A 96.711 2554 64 10 1103 3644 362168376 362165831 0.000000e+00 4233.0
28 TraesCS3D01G165700 chr6A 94.150 547 30 2 557 1103 362168888 362168344 0.000000e+00 832.0
29 TraesCS3D01G165700 chr6A 91.176 238 20 1 2 239 553858652 553858416 7.850000e-84 322.0
30 TraesCS3D01G165700 chr1B 94.989 1816 61 10 4463 6265 203695822 203697620 0.000000e+00 2822.0
31 TraesCS3D01G165700 chr1B 90.336 238 22 1 2 239 539924130 539924366 1.700000e-80 311.0
32 TraesCS3D01G165700 chr1B 89.610 77 7 1 1024 1100 288551500 288551425 5.180000e-16 97.1
33 TraesCS3D01G165700 chr1B 94.000 50 3 0 510 559 223541491 223541442 6.750000e-10 76.8
34 TraesCS3D01G165700 chr7B 94.601 1815 72 8 4464 6265 259610662 259612463 0.000000e+00 2785.0
35 TraesCS3D01G165700 chr4D 82.899 883 107 31 557 1414 280920453 280921316 0.000000e+00 754.0
36 TraesCS3D01G165700 chr6D 90.867 427 34 4 557 981 226923690 226923267 9.140000e-158 568.0
37 TraesCS3D01G165700 chr6D 98.148 54 0 1 500 553 57496 57444 6.700000e-15 93.5
38 TraesCS3D01G165700 chr7D 88.584 473 40 11 563 1027 46357446 46356980 4.250000e-156 562.0
39 TraesCS3D01G165700 chr3B 88.223 467 46 7 562 1027 271284981 271285439 3.310000e-152 549.0
40 TraesCS3D01G165700 chr3B 100.000 45 0 0 509 553 448679485 448679441 4.030000e-12 84.2
41 TraesCS3D01G165700 chr3B 100.000 45 0 0 509 553 713546716 713546672 4.030000e-12 84.2
42 TraesCS3D01G165700 chr1A 89.387 424 41 4 2 425 306983277 306983696 1.200000e-146 531.0
43 TraesCS3D01G165700 chr1A 89.437 284 30 0 2022 2305 272314319 272314036 5.990000e-95 359.0
44 TraesCS3D01G165700 chr1A 83.193 357 30 13 1476 1831 186719046 186718719 3.680000e-77 300.0
45 TraesCS3D01G165700 chr1A 88.608 79 8 1 1351 1428 186719202 186719124 1.860000e-15 95.3
46 TraesCS3D01G165700 chr1A 95.918 49 0 2 510 558 27193758 27193712 1.880000e-10 78.7
47 TraesCS3D01G165700 chr2D 78.957 575 90 23 4707 5265 44005426 44005985 4.630000e-96 363.0
48 TraesCS3D01G165700 chr2D 86.735 294 26 4 2520 2806 212932141 212931854 1.310000e-81 315.0
49 TraesCS3D01G165700 chr2D 80.723 166 23 6 4233 4398 44004885 44005041 3.070000e-23 121.0
50 TraesCS3D01G165700 chr5B 83.708 356 32 9 1476 1831 360595123 360595452 4.730000e-81 313.0
51 TraesCS3D01G165700 chr5B 95.833 48 1 1 506 553 564617268 564617222 6.750000e-10 76.8
52 TraesCS3D01G165700 chr4A 87.687 268 24 7 5206 5467 361465307 361465571 2.840000e-78 303.0
53 TraesCS3D01G165700 chr4A 88.312 77 8 1 1340 1415 46506423 46506347 2.410000e-14 91.6
54 TraesCS3D01G165700 chr7A 83.193 357 33 11 1476 1831 287639832 287639502 1.020000e-77 302.0
55 TraesCS3D01G165700 chr7A 83.571 140 21 2 4746 4884 706302275 706302137 5.110000e-26 130.0
56 TraesCS3D01G165700 chr4B 83.732 209 27 7 2306 2512 414689718 414689921 2.310000e-44 191.0
57 TraesCS3D01G165700 chr4B 87.879 132 15 1 2863 2994 52993977 52993847 3.030000e-33 154.0
58 TraesCS3D01G165700 chr3A 89.655 58 6 0 496 553 109438484 109438541 2.430000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G165700 chr3D 137629080 137635359 6279 False 11598.0 11598 100.0000 1 6280 1 chr3D.!!$F1 6279
1 TraesCS3D01G165700 chr3D 157825140 157828166 3026 False 4844.0 4844 95.4830 1104 4151 1 chr3D.!!$F2 3047
2 TraesCS3D01G165700 chr3D 157833005 157835141 2136 False 3439.0 3439 95.7600 4147 6280 1 chr3D.!!$F3 2133
3 TraesCS3D01G165700 chr2A 431661131 431666708 5577 True 4754.5 8419 97.8235 706 6280 2 chr2A.!!$R1 5574
4 TraesCS3D01G165700 chr2B 231293865 231301143 7278 True 4432.5 8331 92.0550 557 6280 2 chr2B.!!$R1 5723
5 TraesCS3D01G165700 chr5D 270486298 270490054 3756 False 6477.0 6477 97.8220 1103 4851 1 chr5D.!!$F2 3748
6 TraesCS3D01G165700 chr5D 270532658 270534032 1374 False 2362.0 2362 97.6790 4905 6280 1 chr5D.!!$F4 1375
7 TraesCS3D01G165700 chr5A 294708257 294713869 5612 False 4801.0 4983 97.6110 557 6280 2 chr5A.!!$F1 5723
8 TraesCS3D01G165700 chr6B 195458581 195465900 7319 False 2847.5 4623 94.6845 557 6280 2 chr6B.!!$F3 5723
9 TraesCS3D01G165700 chr6B 201227326 201228010 684 False 1099.0 1099 95.7660 5602 6280 1 chr6B.!!$F1 678
10 TraesCS3D01G165700 chr6A 362138251 362140869 2618 True 4305.0 4305 96.2180 3638 6280 1 chr6A.!!$R1 2642
11 TraesCS3D01G165700 chr6A 362165831 362168888 3057 True 2532.5 4233 95.4305 557 3644 2 chr6A.!!$R3 3087
12 TraesCS3D01G165700 chr1B 203695822 203697620 1798 False 2822.0 2822 94.9890 4463 6265 1 chr1B.!!$F1 1802
13 TraesCS3D01G165700 chr7B 259610662 259612463 1801 False 2785.0 2785 94.6010 4464 6265 1 chr7B.!!$F1 1801
14 TraesCS3D01G165700 chr4D 280920453 280921316 863 False 754.0 754 82.8990 557 1414 1 chr4D.!!$F1 857
15 TraesCS3D01G165700 chr2D 44004885 44005985 1100 False 242.0 363 79.8400 4233 5265 2 chr2D.!!$F1 1032

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 492 0.035056 GAGGTGGGGAAGGACACATG 60.035 60.0 0.0 0.0 39.31 3.21 F
500 501 0.107508 AAGGACACATGCCATCGAGG 60.108 55.0 0.0 0.0 41.84 4.63 F
525 526 0.175989 GAGGGAGGTCGAACCATCAC 59.824 60.0 0.0 0.0 41.95 3.06 F
667 668 0.742990 TTTGGGCCGTTAGATGCTCG 60.743 55.0 0.0 0.0 0.00 5.03 F
1030 2665 0.945813 GTCCTCCGACTATGTCTCCG 59.054 60.0 0.0 0.0 35.99 4.63 F
3399 5153 0.179004 TGTCGGCCTTGGTGATTGTT 60.179 50.0 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1430 3146 2.765689 TTCCATCCCTCTCTCTCTCC 57.234 55.000 0.00 0.00 0.0 3.71 R
1452 3172 3.901222 TCTCCACTTGTTCCAGTCACATA 59.099 43.478 0.00 0.00 0.0 2.29 R
1580 3324 5.822519 CCCACTACAGCATAAGAAAGCATAA 59.177 40.000 0.00 0.00 0.0 1.90 R
3400 5154 1.202746 GGCCAATTAGAGCTCCAGAGG 60.203 57.143 10.93 7.75 0.0 3.69 R
3401 5155 1.539929 CGGCCAATTAGAGCTCCAGAG 60.540 57.143 10.93 0.00 0.0 3.35 R
6135 10577 0.738389 AGCGTTGGTGGTTCTTGTTG 59.262 50.000 0.00 0.00 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.641645 CCCGTCCTGGCTGTGCAA 62.642 66.667 0.00 0.00 35.87 4.08
20 21 3.052082 CCGTCCTGGCTGTGCAAG 61.052 66.667 0.00 0.00 0.00 4.01
44 45 3.537874 CGGATCCGGGAGTGGTCC 61.538 72.222 26.95 3.48 43.05 4.46
45 46 2.365105 GGATCCGGGAGTGGTCCA 60.365 66.667 0.00 0.00 46.07 4.02
46 47 1.993391 GGATCCGGGAGTGGTCCAA 60.993 63.158 0.00 0.00 46.07 3.53
47 48 1.221021 GATCCGGGAGTGGTCCAAC 59.779 63.158 0.00 0.00 46.07 3.77
48 49 2.253403 GATCCGGGAGTGGTCCAACC 62.253 65.000 0.00 0.00 46.07 3.77
49 50 2.765705 ATCCGGGAGTGGTCCAACCT 62.766 60.000 0.00 0.00 46.07 3.50
50 51 2.347490 CGGGAGTGGTCCAACCTG 59.653 66.667 13.82 11.86 46.07 4.00
51 52 2.516888 CGGGAGTGGTCCAACCTGT 61.517 63.158 13.99 0.00 46.07 4.00
52 53 1.073199 GGGAGTGGTCCAACCTGTG 59.927 63.158 13.82 0.00 46.07 3.66
53 54 1.600916 GGAGTGGTCCAACCTGTGC 60.601 63.158 0.00 0.00 43.31 4.57
54 55 1.148273 GAGTGGTCCAACCTGTGCA 59.852 57.895 0.00 0.00 39.58 4.57
55 56 0.250901 GAGTGGTCCAACCTGTGCAT 60.251 55.000 0.00 0.00 39.58 3.96
56 57 0.538057 AGTGGTCCAACCTGTGCATG 60.538 55.000 0.00 0.00 39.58 4.06
57 58 1.228521 TGGTCCAACCTGTGCATGG 60.229 57.895 7.10 7.10 39.58 3.66
58 59 2.639327 GGTCCAACCTGTGCATGGC 61.639 63.158 8.40 0.10 34.73 4.40
59 60 2.672651 TCCAACCTGTGCATGGCG 60.673 61.111 8.40 1.31 34.13 5.69
60 61 4.424566 CCAACCTGTGCATGGCGC 62.425 66.667 0.00 0.00 42.89 6.53
61 62 3.367743 CAACCTGTGCATGGCGCT 61.368 61.111 7.64 0.00 43.06 5.92
62 63 3.367743 AACCTGTGCATGGCGCTG 61.368 61.111 7.64 0.00 43.06 5.18
65 66 2.820922 CTGTGCATGGCGCTGCTA 60.821 61.111 20.56 10.16 42.75 3.49
66 67 3.104602 CTGTGCATGGCGCTGCTAC 62.105 63.158 20.56 16.50 42.75 3.58
67 68 2.821366 GTGCATGGCGCTGCTACT 60.821 61.111 20.56 0.00 42.75 2.57
68 69 2.512286 TGCATGGCGCTGCTACTC 60.512 61.111 20.56 0.00 42.75 2.59
69 70 3.275338 GCATGGCGCTGCTACTCC 61.275 66.667 13.86 0.00 39.12 3.85
70 71 2.503061 CATGGCGCTGCTACTCCT 59.497 61.111 7.64 0.00 0.00 3.69
71 72 1.153289 CATGGCGCTGCTACTCCTT 60.153 57.895 7.64 0.00 0.00 3.36
72 73 0.745845 CATGGCGCTGCTACTCCTTT 60.746 55.000 7.64 0.00 0.00 3.11
73 74 0.462759 ATGGCGCTGCTACTCCTTTC 60.463 55.000 7.64 0.00 0.00 2.62
74 75 1.815840 GGCGCTGCTACTCCTTTCC 60.816 63.158 7.64 0.00 0.00 3.13
75 76 2.167861 GCGCTGCTACTCCTTTCCG 61.168 63.158 0.00 0.00 0.00 4.30
76 77 2.167861 CGCTGCTACTCCTTTCCGC 61.168 63.158 0.00 0.00 0.00 5.54
77 78 1.815840 GCTGCTACTCCTTTCCGCC 60.816 63.158 0.00 0.00 0.00 6.13
78 79 1.519455 CTGCTACTCCTTTCCGCCG 60.519 63.158 0.00 0.00 0.00 6.46
79 80 2.202892 GCTACTCCTTTCCGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
80 81 2.499685 CTACTCCTTTCCGCCGGG 59.500 66.667 1.90 0.00 0.00 5.73
81 82 2.284112 TACTCCTTTCCGCCGGGT 60.284 61.111 1.90 0.00 33.83 5.28
82 83 1.896122 CTACTCCTTTCCGCCGGGTT 61.896 60.000 1.90 0.00 33.83 4.11
83 84 2.175035 TACTCCTTTCCGCCGGGTTG 62.175 60.000 1.90 0.00 33.83 3.77
84 85 3.546714 CTCCTTTCCGCCGGGTTGT 62.547 63.158 1.90 0.00 33.83 3.32
85 86 3.361977 CCTTTCCGCCGGGTTGTG 61.362 66.667 1.90 0.00 33.83 3.33
86 87 3.361977 CTTTCCGCCGGGTTGTGG 61.362 66.667 1.90 0.00 37.24 4.17
87 88 3.835790 CTTTCCGCCGGGTTGTGGA 62.836 63.158 1.90 0.00 43.01 4.02
88 89 3.198953 TTTCCGCCGGGTTGTGGAT 62.199 57.895 1.90 0.00 44.05 3.41
89 90 3.615509 TTCCGCCGGGTTGTGGATC 62.616 63.158 1.90 0.00 44.05 3.36
92 93 4.041762 GCCGGGTTGTGGATCCCA 62.042 66.667 9.90 3.88 43.57 4.37
93 94 2.272146 CCGGGTTGTGGATCCCAG 59.728 66.667 9.90 0.00 43.57 4.45
94 95 2.438434 CGGGTTGTGGATCCCAGC 60.438 66.667 9.90 8.77 43.57 4.85
95 96 2.438434 GGGTTGTGGATCCCAGCG 60.438 66.667 9.90 0.00 42.95 5.18
96 97 2.438434 GGTTGTGGATCCCAGCGG 60.438 66.667 9.90 0.00 32.34 5.52
97 98 3.134127 GTTGTGGATCCCAGCGGC 61.134 66.667 9.90 0.00 32.34 6.53
98 99 3.645660 TTGTGGATCCCAGCGGCA 61.646 61.111 9.90 0.00 32.34 5.69
99 100 2.982643 TTGTGGATCCCAGCGGCAT 61.983 57.895 9.90 0.00 32.34 4.40
100 101 2.592861 GTGGATCCCAGCGGCATC 60.593 66.667 9.90 0.00 32.34 3.91
101 102 3.089217 TGGATCCCAGCGGCATCA 61.089 61.111 9.90 0.00 0.00 3.07
102 103 2.192979 GGATCCCAGCGGCATCAA 59.807 61.111 0.00 0.00 0.00 2.57
103 104 1.895707 GGATCCCAGCGGCATCAAG 60.896 63.158 0.00 0.00 0.00 3.02
104 105 1.895707 GATCCCAGCGGCATCAAGG 60.896 63.158 1.45 0.00 0.00 3.61
105 106 2.615227 GATCCCAGCGGCATCAAGGT 62.615 60.000 1.45 0.00 0.00 3.50
106 107 1.344953 ATCCCAGCGGCATCAAGGTA 61.345 55.000 1.45 0.00 0.00 3.08
107 108 1.524621 CCCAGCGGCATCAAGGTAG 60.525 63.158 1.45 0.00 0.00 3.18
108 109 1.524621 CCAGCGGCATCAAGGTAGG 60.525 63.158 1.45 0.00 0.00 3.18
109 110 1.522092 CAGCGGCATCAAGGTAGGA 59.478 57.895 1.45 0.00 0.00 2.94
110 111 0.531532 CAGCGGCATCAAGGTAGGAG 60.532 60.000 1.45 0.00 0.00 3.69
111 112 0.687757 AGCGGCATCAAGGTAGGAGA 60.688 55.000 1.45 0.00 0.00 3.71
112 113 0.178068 GCGGCATCAAGGTAGGAGAA 59.822 55.000 0.00 0.00 0.00 2.87
113 114 1.808133 GCGGCATCAAGGTAGGAGAAG 60.808 57.143 0.00 0.00 0.00 2.85
114 115 1.757118 CGGCATCAAGGTAGGAGAAGA 59.243 52.381 0.00 0.00 0.00 2.87
115 116 2.223923 CGGCATCAAGGTAGGAGAAGAG 60.224 54.545 0.00 0.00 0.00 2.85
116 117 2.484594 GGCATCAAGGTAGGAGAAGAGC 60.485 54.545 0.00 0.00 0.00 4.09
117 118 2.433970 GCATCAAGGTAGGAGAAGAGCT 59.566 50.000 0.00 0.00 0.00 4.09
118 119 3.639094 GCATCAAGGTAGGAGAAGAGCTA 59.361 47.826 0.00 0.00 0.00 3.32
119 120 4.283212 GCATCAAGGTAGGAGAAGAGCTAT 59.717 45.833 0.00 0.00 0.00 2.97
120 121 5.782047 CATCAAGGTAGGAGAAGAGCTATG 58.218 45.833 0.00 0.00 0.00 2.23
121 122 3.639094 TCAAGGTAGGAGAAGAGCTATGC 59.361 47.826 0.00 0.00 0.00 3.14
122 123 3.320610 AGGTAGGAGAAGAGCTATGCA 57.679 47.619 0.00 0.00 0.00 3.96
123 124 2.962421 AGGTAGGAGAAGAGCTATGCAC 59.038 50.000 0.00 0.00 0.00 4.57
124 125 2.695666 GGTAGGAGAAGAGCTATGCACA 59.304 50.000 0.00 0.00 0.00 4.57
125 126 3.133003 GGTAGGAGAAGAGCTATGCACAA 59.867 47.826 0.00 0.00 0.00 3.33
126 127 3.258971 AGGAGAAGAGCTATGCACAAC 57.741 47.619 0.00 0.00 0.00 3.32
127 128 2.093235 AGGAGAAGAGCTATGCACAACC 60.093 50.000 0.00 0.00 0.00 3.77
128 129 1.929836 GAGAAGAGCTATGCACAACCG 59.070 52.381 0.00 0.00 0.00 4.44
129 130 0.375106 GAAGAGCTATGCACAACCGC 59.625 55.000 0.00 0.00 0.00 5.68
130 131 1.361668 AAGAGCTATGCACAACCGCG 61.362 55.000 0.00 0.00 33.35 6.46
131 132 2.047274 AGCTATGCACAACCGCGT 60.047 55.556 4.92 0.00 34.82 6.01
132 133 2.025359 GAGCTATGCACAACCGCGTC 62.025 60.000 4.92 0.00 32.18 5.19
133 134 2.695055 CTATGCACAACCGCGTCG 59.305 61.111 4.92 0.00 32.18 5.12
134 135 3.420222 CTATGCACAACCGCGTCGC 62.420 63.158 7.29 7.29 32.18 5.19
135 136 3.925362 TATGCACAACCGCGTCGCT 62.925 57.895 16.36 0.00 32.18 4.93
145 146 4.608933 GCGTCGCTCGTGATGATA 57.391 55.556 10.68 0.00 42.13 2.15
146 147 2.125664 GCGTCGCTCGTGATGATAC 58.874 57.895 10.68 0.00 42.13 2.24
147 148 0.591488 GCGTCGCTCGTGATGATACA 60.591 55.000 10.68 0.00 42.13 2.29
148 149 1.926386 GCGTCGCTCGTGATGATACAT 60.926 52.381 10.68 0.00 42.13 2.29
149 150 1.710773 CGTCGCTCGTGATGATACATG 59.289 52.381 0.00 0.00 34.52 3.21
150 151 2.602217 CGTCGCTCGTGATGATACATGA 60.602 50.000 0.00 0.00 35.05 3.07
151 152 3.372060 GTCGCTCGTGATGATACATGAA 58.628 45.455 0.00 0.00 35.74 2.57
152 153 3.180584 GTCGCTCGTGATGATACATGAAC 59.819 47.826 0.00 0.00 35.74 3.18
153 154 2.151924 CGCTCGTGATGATACATGAACG 59.848 50.000 0.00 0.00 38.40 3.95
154 155 2.472861 GCTCGTGATGATACATGAACGG 59.527 50.000 0.00 7.83 35.74 4.44
155 156 2.469826 TCGTGATGATACATGAACGGC 58.530 47.619 0.00 0.00 33.63 5.68
156 157 1.190103 CGTGATGATACATGAACGGCG 59.810 52.381 4.80 4.80 0.00 6.46
157 158 1.526887 GTGATGATACATGAACGGCGG 59.473 52.381 13.24 0.00 0.00 6.13
158 159 1.410882 TGATGATACATGAACGGCGGA 59.589 47.619 13.24 0.00 0.00 5.54
159 160 1.792949 GATGATACATGAACGGCGGAC 59.207 52.381 13.24 5.13 0.00 4.79
160 161 0.179094 TGATACATGAACGGCGGACC 60.179 55.000 13.24 0.00 0.00 4.46
161 162 0.179094 GATACATGAACGGCGGACCA 60.179 55.000 13.24 6.20 34.57 4.02
162 163 0.179084 ATACATGAACGGCGGACCAG 60.179 55.000 13.24 0.00 34.57 4.00
163 164 2.233605 TACATGAACGGCGGACCAGG 62.234 60.000 13.24 10.09 34.57 4.45
164 165 3.319198 ATGAACGGCGGACCAGGT 61.319 61.111 13.24 0.00 34.57 4.00
165 166 2.890766 ATGAACGGCGGACCAGGTT 61.891 57.895 13.24 0.00 34.57 3.50
166 167 3.047877 GAACGGCGGACCAGGTTG 61.048 66.667 13.24 0.00 34.57 3.77
167 168 3.524648 GAACGGCGGACCAGGTTGA 62.525 63.158 13.24 0.00 34.57 3.18
168 169 3.530910 AACGGCGGACCAGGTTGAG 62.531 63.158 13.24 0.00 34.57 3.02
169 170 4.760047 CGGCGGACCAGGTTGAGG 62.760 72.222 0.00 0.00 34.57 3.86
172 173 4.410400 CGGACCAGGTTGAGGCCC 62.410 72.222 0.00 0.00 0.00 5.80
173 174 2.936032 GGACCAGGTTGAGGCCCT 60.936 66.667 0.00 0.00 0.00 5.19
174 175 2.671682 GACCAGGTTGAGGCCCTC 59.328 66.667 2.98 2.98 0.00 4.30
175 176 2.121963 ACCAGGTTGAGGCCCTCA 60.122 61.111 10.05 10.05 38.87 3.86
176 177 1.542375 ACCAGGTTGAGGCCCTCAT 60.542 57.895 15.62 0.00 40.39 2.90
177 178 1.225704 CCAGGTTGAGGCCCTCATC 59.774 63.158 15.62 13.90 40.39 2.92
178 179 1.565390 CCAGGTTGAGGCCCTCATCA 61.565 60.000 15.62 0.00 40.39 3.07
179 180 0.329261 CAGGTTGAGGCCCTCATCAA 59.671 55.000 15.62 0.00 40.39 2.57
180 181 1.075601 AGGTTGAGGCCCTCATCAAA 58.924 50.000 15.62 0.00 40.39 2.69
181 182 1.177401 GGTTGAGGCCCTCATCAAAC 58.823 55.000 15.62 9.56 40.39 2.93
182 183 1.272147 GGTTGAGGCCCTCATCAAACT 60.272 52.381 15.62 0.00 40.39 2.66
183 184 2.087646 GTTGAGGCCCTCATCAAACTC 58.912 52.381 15.62 0.00 40.39 3.01
184 185 0.250234 TGAGGCCCTCATCAAACTCG 59.750 55.000 10.05 0.00 35.39 4.18
185 186 0.250513 GAGGCCCTCATCAAACTCGT 59.749 55.000 5.69 0.00 0.00 4.18
186 187 0.036010 AGGCCCTCATCAAACTCGTG 60.036 55.000 0.00 0.00 0.00 4.35
187 188 0.036388 GGCCCTCATCAAACTCGTGA 60.036 55.000 0.00 0.00 0.00 4.35
188 189 1.407437 GGCCCTCATCAAACTCGTGAT 60.407 52.381 0.00 0.00 38.84 3.06
189 190 1.936547 GCCCTCATCAAACTCGTGATC 59.063 52.381 0.00 0.00 36.04 2.92
190 191 2.419297 GCCCTCATCAAACTCGTGATCT 60.419 50.000 0.00 0.00 36.04 2.75
191 192 3.193263 CCCTCATCAAACTCGTGATCTG 58.807 50.000 0.00 0.00 36.04 2.90
192 193 3.118992 CCCTCATCAAACTCGTGATCTGA 60.119 47.826 0.00 0.00 36.04 3.27
193 194 3.862267 CCTCATCAAACTCGTGATCTGAC 59.138 47.826 0.00 0.00 36.04 3.51
194 195 4.381398 CCTCATCAAACTCGTGATCTGACT 60.381 45.833 0.00 0.00 36.04 3.41
195 196 4.738124 TCATCAAACTCGTGATCTGACTC 58.262 43.478 0.00 0.00 36.04 3.36
196 197 4.218417 TCATCAAACTCGTGATCTGACTCA 59.782 41.667 0.00 0.00 36.04 3.41
197 198 4.166187 TCAAACTCGTGATCTGACTCAG 57.834 45.455 0.00 0.00 0.00 3.35
198 199 3.821033 TCAAACTCGTGATCTGACTCAGA 59.179 43.478 11.24 11.24 44.99 3.27
199 200 4.083057 TCAAACTCGTGATCTGACTCAGAG 60.083 45.833 14.12 0.00 44.08 3.35
200 201 3.066291 ACTCGTGATCTGACTCAGAGT 57.934 47.619 14.12 1.46 44.08 3.24
201 202 4.209307 ACTCGTGATCTGACTCAGAGTA 57.791 45.455 14.12 3.36 44.08 2.59
202 203 3.936453 ACTCGTGATCTGACTCAGAGTAC 59.064 47.826 14.12 13.10 44.08 2.73
203 204 3.935828 CTCGTGATCTGACTCAGAGTACA 59.064 47.826 14.12 10.84 44.08 2.90
204 205 4.324267 TCGTGATCTGACTCAGAGTACAA 58.676 43.478 14.12 0.00 44.08 2.41
205 206 4.393371 TCGTGATCTGACTCAGAGTACAAG 59.607 45.833 14.12 14.23 44.08 3.16
206 207 4.420168 GTGATCTGACTCAGAGTACAAGC 58.580 47.826 14.12 0.00 44.08 4.01
207 208 3.445450 TGATCTGACTCAGAGTACAAGCC 59.555 47.826 14.12 0.00 44.08 4.35
208 209 2.171840 TCTGACTCAGAGTACAAGCCC 58.828 52.381 2.00 0.00 35.39 5.19
209 210 1.895798 CTGACTCAGAGTACAAGCCCA 59.104 52.381 2.00 0.00 32.44 5.36
210 211 2.499289 CTGACTCAGAGTACAAGCCCAT 59.501 50.000 2.00 0.00 32.44 4.00
211 212 2.906389 TGACTCAGAGTACAAGCCCATT 59.094 45.455 2.00 0.00 0.00 3.16
212 213 3.265791 GACTCAGAGTACAAGCCCATTG 58.734 50.000 2.00 0.00 45.01 2.82
213 214 2.906389 ACTCAGAGTACAAGCCCATTGA 59.094 45.455 0.00 0.00 41.83 2.57
214 215 3.327757 ACTCAGAGTACAAGCCCATTGAA 59.672 43.478 0.00 0.00 41.83 2.69
215 216 3.937706 CTCAGAGTACAAGCCCATTGAAG 59.062 47.826 0.00 0.00 41.83 3.02
216 217 2.421424 CAGAGTACAAGCCCATTGAAGC 59.579 50.000 0.00 0.00 41.83 3.86
217 218 1.398390 GAGTACAAGCCCATTGAAGCG 59.602 52.381 0.00 0.00 41.83 4.68
218 219 0.451783 GTACAAGCCCATTGAAGCGG 59.548 55.000 0.00 0.00 41.83 5.52
219 220 1.312371 TACAAGCCCATTGAAGCGGC 61.312 55.000 0.00 0.00 41.83 6.53
222 223 4.179579 GCCCATTGAAGCGGCGAC 62.180 66.667 12.98 1.23 31.92 5.19
223 224 2.436646 CCCATTGAAGCGGCGACT 60.437 61.111 12.98 4.18 0.00 4.18
224 225 2.753966 CCCATTGAAGCGGCGACTG 61.754 63.158 12.98 0.00 0.00 3.51
225 226 2.034879 CCATTGAAGCGGCGACTGT 61.035 57.895 12.98 0.00 0.00 3.55
226 227 1.133253 CATTGAAGCGGCGACTGTG 59.867 57.895 12.98 0.00 0.00 3.66
227 228 2.034879 ATTGAAGCGGCGACTGTGG 61.035 57.895 12.98 0.00 0.00 4.17
228 229 2.731691 ATTGAAGCGGCGACTGTGGT 62.732 55.000 12.98 0.00 0.00 4.16
229 230 3.414700 GAAGCGGCGACTGTGGTG 61.415 66.667 12.98 0.00 0.00 4.17
230 231 4.235762 AAGCGGCGACTGTGGTGT 62.236 61.111 12.98 0.00 0.00 4.16
231 232 3.750373 AAGCGGCGACTGTGGTGTT 62.750 57.895 12.98 0.00 0.00 3.32
232 233 4.012895 GCGGCGACTGTGGTGTTG 62.013 66.667 12.98 0.00 0.00 3.33
233 234 3.345808 CGGCGACTGTGGTGTTGG 61.346 66.667 0.00 0.00 0.00 3.77
234 235 3.660111 GGCGACTGTGGTGTTGGC 61.660 66.667 0.00 0.00 39.22 4.52
235 236 2.899838 GCGACTGTGGTGTTGGCA 60.900 61.111 0.00 0.00 0.00 4.92
236 237 2.896801 GCGACTGTGGTGTTGGCAG 61.897 63.158 0.00 0.00 36.41 4.85
237 238 1.227527 CGACTGTGGTGTTGGCAGA 60.228 57.895 0.00 0.00 34.60 4.26
238 239 1.224069 CGACTGTGGTGTTGGCAGAG 61.224 60.000 0.00 0.00 34.60 3.35
239 240 0.886490 GACTGTGGTGTTGGCAGAGG 60.886 60.000 0.00 0.00 34.60 3.69
240 241 1.149174 CTGTGGTGTTGGCAGAGGT 59.851 57.895 0.00 0.00 32.39 3.85
241 242 1.152984 TGTGGTGTTGGCAGAGGTG 60.153 57.895 0.00 0.00 0.00 4.00
242 243 1.898574 GTGGTGTTGGCAGAGGTGG 60.899 63.158 0.00 0.00 0.00 4.61
243 244 2.075566 TGGTGTTGGCAGAGGTGGA 61.076 57.895 0.00 0.00 0.00 4.02
244 245 1.302832 GGTGTTGGCAGAGGTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
245 246 1.968540 GTGTTGGCAGAGGTGGAGC 60.969 63.158 0.00 0.00 0.00 4.70
246 247 2.149383 TGTTGGCAGAGGTGGAGCT 61.149 57.895 0.00 0.00 0.00 4.09
247 248 0.835971 TGTTGGCAGAGGTGGAGCTA 60.836 55.000 0.00 0.00 0.00 3.32
248 249 0.107945 GTTGGCAGAGGTGGAGCTAG 60.108 60.000 0.00 0.00 0.00 3.42
249 250 1.903877 TTGGCAGAGGTGGAGCTAGC 61.904 60.000 6.62 6.62 0.00 3.42
250 251 2.362369 GGCAGAGGTGGAGCTAGCA 61.362 63.158 18.83 0.00 0.00 3.49
251 252 1.143620 GCAGAGGTGGAGCTAGCAG 59.856 63.158 18.83 0.00 0.00 4.24
252 253 1.143620 CAGAGGTGGAGCTAGCAGC 59.856 63.158 18.83 8.33 42.84 5.25
261 262 4.865865 GCTAGCAGCTTGTAGGGG 57.134 61.111 10.63 0.00 38.45 4.79
262 263 2.212327 GCTAGCAGCTTGTAGGGGA 58.788 57.895 10.63 0.00 38.45 4.81
263 264 0.541863 GCTAGCAGCTTGTAGGGGAA 59.458 55.000 10.63 0.00 38.45 3.97
264 265 1.141858 GCTAGCAGCTTGTAGGGGAAT 59.858 52.381 10.63 0.00 38.45 3.01
265 266 2.843701 CTAGCAGCTTGTAGGGGAATG 58.156 52.381 0.00 0.00 0.00 2.67
266 267 1.289160 AGCAGCTTGTAGGGGAATGA 58.711 50.000 0.00 0.00 0.00 2.57
267 268 1.635487 AGCAGCTTGTAGGGGAATGAA 59.365 47.619 0.00 0.00 0.00 2.57
268 269 2.019984 GCAGCTTGTAGGGGAATGAAG 58.980 52.381 0.00 0.00 0.00 3.02
269 270 2.356125 GCAGCTTGTAGGGGAATGAAGA 60.356 50.000 0.00 0.00 0.00 2.87
270 271 3.873801 GCAGCTTGTAGGGGAATGAAGAA 60.874 47.826 0.00 0.00 0.00 2.52
271 272 3.944015 CAGCTTGTAGGGGAATGAAGAAG 59.056 47.826 0.00 0.00 0.00 2.85
272 273 2.685388 GCTTGTAGGGGAATGAAGAAGC 59.315 50.000 0.00 0.00 0.00 3.86
273 274 3.623453 GCTTGTAGGGGAATGAAGAAGCT 60.623 47.826 0.00 0.00 33.39 3.74
274 275 4.593956 CTTGTAGGGGAATGAAGAAGCTT 58.406 43.478 0.00 0.00 0.00 3.74
275 276 4.222124 TGTAGGGGAATGAAGAAGCTTC 57.778 45.455 19.11 19.11 0.00 3.86
276 277 3.587061 TGTAGGGGAATGAAGAAGCTTCA 59.413 43.478 27.57 9.25 0.00 3.02
277 278 4.228210 TGTAGGGGAATGAAGAAGCTTCAT 59.772 41.667 27.57 17.00 40.57 2.57
278 279 3.895998 AGGGGAATGAAGAAGCTTCATC 58.104 45.455 27.57 24.55 38.11 2.92
279 280 2.954989 GGGGAATGAAGAAGCTTCATCC 59.045 50.000 27.57 22.38 38.11 3.51
280 281 2.615912 GGGAATGAAGAAGCTTCATCCG 59.384 50.000 27.57 0.00 38.11 4.18
281 282 2.032675 GGAATGAAGAAGCTTCATCCGC 59.967 50.000 27.57 15.70 38.11 5.54
282 283 1.293924 ATGAAGAAGCTTCATCCGCG 58.706 50.000 27.57 0.00 34.28 6.46
283 284 0.740868 TGAAGAAGCTTCATCCGCGG 60.741 55.000 27.57 22.12 0.00 6.46
284 285 2.041366 GAAGAAGCTTCATCCGCGGC 62.041 60.000 27.57 7.61 0.00 6.53
285 286 3.577313 GAAGCTTCATCCGCGGCC 61.577 66.667 23.51 3.91 0.00 6.13
286 287 4.408821 AAGCTTCATCCGCGGCCA 62.409 61.111 23.51 4.04 0.00 5.36
287 288 3.704231 AAGCTTCATCCGCGGCCAT 62.704 57.895 23.51 6.95 0.00 4.40
288 289 3.957535 GCTTCATCCGCGGCCATG 61.958 66.667 23.51 20.40 0.00 3.66
289 290 2.203056 CTTCATCCGCGGCCATGA 60.203 61.111 23.51 22.53 0.00 3.07
290 291 1.598962 CTTCATCCGCGGCCATGAT 60.599 57.895 25.06 10.16 0.00 2.45
291 292 1.848932 CTTCATCCGCGGCCATGATG 61.849 60.000 25.06 22.79 37.75 3.07
292 293 4.034258 CATCCGCGGCCATGATGC 62.034 66.667 23.51 0.00 30.53 3.91
293 294 4.567488 ATCCGCGGCCATGATGCA 62.567 61.111 23.51 0.00 0.00 3.96
296 297 3.945434 CGCGGCCATGATGCAGAC 61.945 66.667 2.24 0.00 0.00 3.51
297 298 3.945434 GCGGCCATGATGCAGACG 61.945 66.667 2.24 0.00 0.00 4.18
298 299 2.202919 CGGCCATGATGCAGACGA 60.203 61.111 2.24 0.00 0.00 4.20
299 300 2.242572 CGGCCATGATGCAGACGAG 61.243 63.158 2.24 0.00 0.00 4.18
300 301 2.541120 GGCCATGATGCAGACGAGC 61.541 63.158 0.00 0.00 0.00 5.03
301 302 2.879070 GCCATGATGCAGACGAGCG 61.879 63.158 0.00 0.00 37.31 5.03
302 303 2.242572 CCATGATGCAGACGAGCGG 61.243 63.158 0.00 0.00 37.31 5.52
303 304 2.587194 ATGATGCAGACGAGCGGC 60.587 61.111 0.00 0.00 38.26 6.53
305 306 4.854784 GATGCAGACGAGCGGCGA 62.855 66.667 12.98 0.00 44.57 5.54
311 312 4.849329 GACGAGCGGCGACCGATT 62.849 66.667 23.62 8.54 45.97 3.34
312 313 4.430765 ACGAGCGGCGACCGATTT 62.431 61.111 23.62 6.34 45.97 2.17
313 314 3.186047 CGAGCGGCGACCGATTTT 61.186 61.111 20.06 4.17 45.97 1.82
314 315 2.736682 CGAGCGGCGACCGATTTTT 61.737 57.895 20.06 2.04 45.97 1.94
315 316 1.060465 GAGCGGCGACCGATTTTTC 59.940 57.895 20.06 3.46 45.97 2.29
316 317 1.359459 GAGCGGCGACCGATTTTTCT 61.359 55.000 20.06 7.75 45.97 2.52
317 318 1.359459 AGCGGCGACCGATTTTTCTC 61.359 55.000 20.06 2.20 45.97 2.87
336 337 4.366159 GGAGACCAGGAGGGAGAC 57.634 66.667 0.00 0.00 41.15 3.36
337 338 1.755008 GGAGACCAGGAGGGAGACG 60.755 68.421 0.00 0.00 41.15 4.18
338 339 1.755008 GAGACCAGGAGGGAGACGG 60.755 68.421 0.00 0.00 41.15 4.79
339 340 2.760385 GACCAGGAGGGAGACGGG 60.760 72.222 0.00 0.00 41.15 5.28
340 341 4.400251 ACCAGGAGGGAGACGGGG 62.400 72.222 0.00 0.00 41.15 5.73
341 342 4.075793 CCAGGAGGGAGACGGGGA 62.076 72.222 0.00 0.00 40.01 4.81
342 343 2.038975 CAGGAGGGAGACGGGGAA 59.961 66.667 0.00 0.00 0.00 3.97
343 344 1.383248 CAGGAGGGAGACGGGGAAT 60.383 63.158 0.00 0.00 0.00 3.01
344 345 0.105658 CAGGAGGGAGACGGGGAATA 60.106 60.000 0.00 0.00 0.00 1.75
345 346 0.105607 AGGAGGGAGACGGGGAATAC 60.106 60.000 0.00 0.00 0.00 1.89
346 347 0.105607 GGAGGGAGACGGGGAATACT 60.106 60.000 0.00 0.00 0.00 2.12
347 348 1.041437 GAGGGAGACGGGGAATACTG 58.959 60.000 0.00 0.00 0.00 2.74
348 349 0.398664 AGGGAGACGGGGAATACTGG 60.399 60.000 0.00 0.00 0.00 4.00
349 350 0.398098 GGGAGACGGGGAATACTGGA 60.398 60.000 0.00 0.00 0.00 3.86
350 351 1.718280 GGAGACGGGGAATACTGGAT 58.282 55.000 0.00 0.00 0.00 3.41
351 352 1.619332 GGAGACGGGGAATACTGGATC 59.381 57.143 0.00 0.00 0.00 3.36
352 353 1.269998 GAGACGGGGAATACTGGATCG 59.730 57.143 0.00 0.00 0.00 3.69
353 354 0.317479 GACGGGGAATACTGGATCGG 59.683 60.000 0.00 0.00 0.00 4.18
354 355 1.119574 ACGGGGAATACTGGATCGGG 61.120 60.000 0.00 0.00 0.00 5.14
355 356 1.827399 CGGGGAATACTGGATCGGGG 61.827 65.000 0.00 0.00 0.00 5.73
356 357 1.375326 GGGAATACTGGATCGGGGC 59.625 63.158 0.00 0.00 0.00 5.80
357 358 1.004918 GGAATACTGGATCGGGGCG 60.005 63.158 0.00 0.00 0.00 6.13
358 359 1.469335 GGAATACTGGATCGGGGCGA 61.469 60.000 0.00 0.00 41.13 5.54
359 360 0.038159 GAATACTGGATCGGGGCGAG 60.038 60.000 0.00 0.00 39.91 5.03
360 361 1.472662 AATACTGGATCGGGGCGAGG 61.473 60.000 0.00 0.00 39.91 4.63
361 362 2.367586 ATACTGGATCGGGGCGAGGA 62.368 60.000 0.00 0.00 39.91 3.71
362 363 2.978298 TACTGGATCGGGGCGAGGAG 62.978 65.000 0.00 0.00 39.91 3.69
365 366 3.155167 GATCGGGGCGAGGAGGTT 61.155 66.667 0.00 0.00 39.91 3.50
366 367 3.447025 GATCGGGGCGAGGAGGTTG 62.447 68.421 0.00 0.00 39.91 3.77
370 371 4.821589 GGGCGAGGAGGTTGCGAG 62.822 72.222 0.00 0.00 36.22 5.03
371 372 4.821589 GGCGAGGAGGTTGCGAGG 62.822 72.222 0.00 0.00 36.22 4.63
372 373 3.760035 GCGAGGAGGTTGCGAGGA 61.760 66.667 0.00 0.00 0.00 3.71
373 374 3.082579 GCGAGGAGGTTGCGAGGAT 62.083 63.158 0.00 0.00 0.00 3.24
374 375 1.227089 CGAGGAGGTTGCGAGGATG 60.227 63.158 0.00 0.00 0.00 3.51
375 376 1.144936 GAGGAGGTTGCGAGGATGG 59.855 63.158 0.00 0.00 0.00 3.51
376 377 1.306141 AGGAGGTTGCGAGGATGGA 60.306 57.895 0.00 0.00 0.00 3.41
377 378 1.144936 GGAGGTTGCGAGGATGGAG 59.855 63.158 0.00 0.00 0.00 3.86
378 379 1.330655 GGAGGTTGCGAGGATGGAGA 61.331 60.000 0.00 0.00 0.00 3.71
379 380 0.179097 GAGGTTGCGAGGATGGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
380 381 1.519455 GGTTGCGAGGATGGAGACG 60.519 63.158 0.00 0.00 0.00 4.18
381 382 1.215647 GTTGCGAGGATGGAGACGT 59.784 57.895 0.00 0.00 0.00 4.34
382 383 1.078759 GTTGCGAGGATGGAGACGTG 61.079 60.000 0.00 0.00 0.00 4.49
383 384 2.105128 GCGAGGATGGAGACGTGG 59.895 66.667 0.00 0.00 0.00 4.94
384 385 2.808315 CGAGGATGGAGACGTGGG 59.192 66.667 0.00 0.00 0.00 4.61
385 386 1.753078 CGAGGATGGAGACGTGGGA 60.753 63.158 0.00 0.00 0.00 4.37
386 387 1.817209 GAGGATGGAGACGTGGGAC 59.183 63.158 0.00 0.00 0.00 4.46
396 397 2.278989 CGTGGGACGTGTGTTCGT 60.279 61.111 0.00 0.00 46.88 3.85
397 398 2.582265 CGTGGGACGTGTGTTCGTG 61.582 63.158 0.00 0.00 44.21 4.35
398 399 1.227031 GTGGGACGTGTGTTCGTGA 60.227 57.895 0.00 0.00 44.21 4.35
399 400 0.806884 GTGGGACGTGTGTTCGTGAA 60.807 55.000 0.00 0.00 44.21 3.18
400 401 0.806884 TGGGACGTGTGTTCGTGAAC 60.807 55.000 5.80 5.80 44.21 3.18
401 402 0.529119 GGGACGTGTGTTCGTGAACT 60.529 55.000 13.40 0.00 44.21 3.01
402 403 1.283736 GGACGTGTGTTCGTGAACTT 58.716 50.000 13.40 0.00 44.21 2.66
403 404 1.257155 GGACGTGTGTTCGTGAACTTC 59.743 52.381 13.40 7.64 44.21 3.01
404 405 0.918619 ACGTGTGTTCGTGAACTTCG 59.081 50.000 13.40 15.15 42.56 3.79
405 406 0.918619 CGTGTGTTCGTGAACTTCGT 59.081 50.000 13.40 0.00 41.67 3.85
406 407 1.330818 CGTGTGTTCGTGAACTTCGTG 60.331 52.381 13.40 0.00 41.67 4.35
407 408 1.005347 GTGTGTTCGTGAACTTCGTGG 60.005 52.381 13.40 0.00 41.67 4.94
408 409 0.580104 GTGTTCGTGAACTTCGTGGG 59.420 55.000 13.40 0.00 41.67 4.61
409 410 0.176219 TGTTCGTGAACTTCGTGGGT 59.824 50.000 13.40 0.00 41.67 4.51
410 411 1.408340 TGTTCGTGAACTTCGTGGGTA 59.592 47.619 13.40 0.00 41.67 3.69
411 412 2.056577 GTTCGTGAACTTCGTGGGTAG 58.943 52.381 5.51 0.00 38.25 3.18
412 413 0.038892 TCGTGAACTTCGTGGGTAGC 60.039 55.000 0.00 0.00 0.00 3.58
413 414 1.342082 CGTGAACTTCGTGGGTAGCG 61.342 60.000 0.00 0.00 0.00 4.26
414 415 1.012486 GTGAACTTCGTGGGTAGCGG 61.012 60.000 0.00 0.00 0.00 5.52
415 416 2.047560 AACTTCGTGGGTAGCGGC 60.048 61.111 0.00 0.00 0.00 6.53
416 417 2.502692 GAACTTCGTGGGTAGCGGCT 62.503 60.000 7.98 7.98 0.00 5.52
417 418 2.509336 CTTCGTGGGTAGCGGCTG 60.509 66.667 13.86 0.00 0.00 4.85
418 419 3.296709 CTTCGTGGGTAGCGGCTGT 62.297 63.158 13.86 0.00 0.00 4.40
419 420 2.781595 CTTCGTGGGTAGCGGCTGTT 62.782 60.000 13.86 0.00 0.00 3.16
420 421 2.358247 CGTGGGTAGCGGCTGTTT 60.358 61.111 13.86 0.00 0.00 2.83
421 422 1.964373 CGTGGGTAGCGGCTGTTTT 60.964 57.895 13.86 0.00 0.00 2.43
422 423 1.512156 CGTGGGTAGCGGCTGTTTTT 61.512 55.000 13.86 0.00 0.00 1.94
478 479 4.415332 CGGGACACGTCGAGGTGG 62.415 72.222 33.95 20.04 42.23 4.61
479 480 4.065281 GGGACACGTCGAGGTGGG 62.065 72.222 33.95 16.58 42.23 4.61
480 481 4.065281 GGACACGTCGAGGTGGGG 62.065 72.222 33.95 15.93 42.23 4.96
481 482 2.987547 GACACGTCGAGGTGGGGA 60.988 66.667 33.95 0.00 42.23 4.81
482 483 2.522436 ACACGTCGAGGTGGGGAA 60.522 61.111 33.95 0.00 42.23 3.97
483 484 2.261671 CACGTCGAGGTGGGGAAG 59.738 66.667 26.51 3.69 34.27 3.46
484 485 2.995574 ACGTCGAGGTGGGGAAGG 60.996 66.667 10.45 0.00 0.00 3.46
485 486 2.678934 CGTCGAGGTGGGGAAGGA 60.679 66.667 0.00 0.00 0.00 3.36
486 487 2.979649 GTCGAGGTGGGGAAGGAC 59.020 66.667 0.00 0.00 0.00 3.85
487 488 1.911766 GTCGAGGTGGGGAAGGACA 60.912 63.158 0.00 0.00 0.00 4.02
488 489 1.911766 TCGAGGTGGGGAAGGACAC 60.912 63.158 0.00 0.00 36.89 3.67
489 490 2.214216 CGAGGTGGGGAAGGACACA 61.214 63.158 0.00 0.00 39.31 3.72
490 491 1.553690 CGAGGTGGGGAAGGACACAT 61.554 60.000 0.00 0.00 39.31 3.21
491 492 0.035056 GAGGTGGGGAAGGACACATG 60.035 60.000 0.00 0.00 39.31 3.21
492 493 1.678970 GGTGGGGAAGGACACATGC 60.679 63.158 0.00 0.00 39.31 4.06
493 494 1.678970 GTGGGGAAGGACACATGCC 60.679 63.158 0.00 0.00 37.54 4.40
494 495 2.159490 TGGGGAAGGACACATGCCA 61.159 57.895 0.00 0.00 0.00 4.92
495 496 1.307647 GGGGAAGGACACATGCCAT 59.692 57.895 0.00 0.00 0.00 4.40
496 497 0.753111 GGGGAAGGACACATGCCATC 60.753 60.000 0.00 0.00 0.00 3.51
497 498 1.097547 GGGAAGGACACATGCCATCG 61.098 60.000 0.00 0.00 0.00 3.84
498 499 0.107703 GGAAGGACACATGCCATCGA 60.108 55.000 0.00 0.00 0.00 3.59
499 500 1.293924 GAAGGACACATGCCATCGAG 58.706 55.000 0.00 0.00 0.00 4.04
500 501 0.107508 AAGGACACATGCCATCGAGG 60.108 55.000 0.00 0.00 41.84 4.63
501 502 1.524621 GGACACATGCCATCGAGGG 60.525 63.158 12.83 12.83 38.09 4.30
502 503 1.524621 GACACATGCCATCGAGGGG 60.525 63.158 19.23 10.00 38.09 4.79
503 504 2.257409 GACACATGCCATCGAGGGGT 62.257 60.000 19.23 6.44 38.09 4.95
504 505 1.524621 CACATGCCATCGAGGGGTC 60.525 63.158 19.23 2.14 38.09 4.46
505 506 2.280389 CATGCCATCGAGGGGTCG 60.280 66.667 19.23 0.00 38.09 4.79
506 507 3.550431 ATGCCATCGAGGGGTCGG 61.550 66.667 19.23 0.00 38.09 4.79
507 508 4.770362 TGCCATCGAGGGGTCGGA 62.770 66.667 19.23 0.00 38.09 4.55
508 509 3.917760 GCCATCGAGGGGTCGGAG 61.918 72.222 19.23 0.00 38.09 4.63
509 510 3.227276 CCATCGAGGGGTCGGAGG 61.227 72.222 8.61 0.00 0.00 4.30
510 511 3.227276 CATCGAGGGGTCGGAGGG 61.227 72.222 0.00 0.00 0.00 4.30
511 512 3.426836 ATCGAGGGGTCGGAGGGA 61.427 66.667 0.00 0.00 0.00 4.20
512 513 3.438615 ATCGAGGGGTCGGAGGGAG 62.439 68.421 0.00 0.00 0.00 4.30
514 515 4.077180 GAGGGGTCGGAGGGAGGT 62.077 72.222 0.00 0.00 0.00 3.85
515 516 4.077180 AGGGGTCGGAGGGAGGTC 62.077 72.222 0.00 0.00 0.00 3.85
517 518 4.437587 GGGTCGGAGGGAGGTCGA 62.438 72.222 0.00 0.00 0.00 4.20
518 519 2.362120 GGTCGGAGGGAGGTCGAA 60.362 66.667 0.00 0.00 34.62 3.71
519 520 2.708865 GGTCGGAGGGAGGTCGAAC 61.709 68.421 0.00 0.00 34.62 3.95
520 521 2.362120 TCGGAGGGAGGTCGAACC 60.362 66.667 0.00 0.00 38.99 3.62
521 522 2.678934 CGGAGGGAGGTCGAACCA 60.679 66.667 0.00 0.00 41.95 3.67
522 523 2.058595 CGGAGGGAGGTCGAACCAT 61.059 63.158 0.00 0.00 41.95 3.55
523 524 1.823976 GGAGGGAGGTCGAACCATC 59.176 63.158 0.00 3.72 41.95 3.51
524 525 0.976073 GGAGGGAGGTCGAACCATCA 60.976 60.000 16.69 0.00 41.95 3.07
525 526 0.175989 GAGGGAGGTCGAACCATCAC 59.824 60.000 0.00 0.00 41.95 3.06
526 527 1.153628 GGGAGGTCGAACCATCACG 60.154 63.158 0.00 0.00 41.95 4.35
527 528 1.601419 GGGAGGTCGAACCATCACGA 61.601 60.000 0.00 0.00 41.95 4.35
530 531 4.546637 GTCGAACCATCACGACGT 57.453 55.556 0.00 0.00 46.39 4.34
531 532 2.805277 GTCGAACCATCACGACGTT 58.195 52.632 0.00 0.00 46.39 3.99
532 533 1.134226 GTCGAACCATCACGACGTTT 58.866 50.000 0.00 0.00 46.39 3.60
533 534 1.133407 TCGAACCATCACGACGTTTG 58.867 50.000 0.00 0.00 33.62 2.93
534 535 1.133407 CGAACCATCACGACGTTTGA 58.867 50.000 0.00 3.54 0.00 2.69
535 536 1.724623 CGAACCATCACGACGTTTGAT 59.275 47.619 0.00 7.59 33.81 2.57
536 537 2.156891 CGAACCATCACGACGTTTGATT 59.843 45.455 10.13 0.00 30.98 2.57
537 538 3.720920 CGAACCATCACGACGTTTGATTC 60.721 47.826 10.13 1.12 30.98 2.52
538 539 3.040147 ACCATCACGACGTTTGATTCT 57.960 42.857 10.13 0.00 30.98 2.40
539 540 2.993899 ACCATCACGACGTTTGATTCTC 59.006 45.455 10.13 0.00 30.98 2.87
540 541 2.348666 CCATCACGACGTTTGATTCTCC 59.651 50.000 10.13 0.00 30.98 3.71
541 542 3.254060 CATCACGACGTTTGATTCTCCT 58.746 45.455 10.13 0.00 30.98 3.69
542 543 3.380479 TCACGACGTTTGATTCTCCTT 57.620 42.857 0.00 0.00 0.00 3.36
543 544 3.724374 TCACGACGTTTGATTCTCCTTT 58.276 40.909 0.00 0.00 0.00 3.11
544 545 4.873817 TCACGACGTTTGATTCTCCTTTA 58.126 39.130 0.00 0.00 0.00 1.85
545 546 5.291178 TCACGACGTTTGATTCTCCTTTAA 58.709 37.500 0.00 0.00 0.00 1.52
546 547 5.929992 TCACGACGTTTGATTCTCCTTTAAT 59.070 36.000 0.00 0.00 0.00 1.40
547 548 7.092079 TCACGACGTTTGATTCTCCTTTAATA 58.908 34.615 0.00 0.00 0.00 0.98
548 549 7.274904 TCACGACGTTTGATTCTCCTTTAATAG 59.725 37.037 0.00 0.00 0.00 1.73
549 550 7.063074 CACGACGTTTGATTCTCCTTTAATAGT 59.937 37.037 0.00 0.00 0.00 2.12
550 551 8.246180 ACGACGTTTGATTCTCCTTTAATAGTA 58.754 33.333 0.00 0.00 0.00 1.82
551 552 8.744011 CGACGTTTGATTCTCCTTTAATAGTAG 58.256 37.037 0.00 0.00 0.00 2.57
552 553 9.798994 GACGTTTGATTCTCCTTTAATAGTAGA 57.201 33.333 0.00 0.00 0.00 2.59
647 648 6.957920 TGGTCAATTTGATCTTTGACTTCA 57.042 33.333 23.53 16.46 46.92 3.02
667 668 0.742990 TTTGGGCCGTTAGATGCTCG 60.743 55.000 0.00 0.00 0.00 5.03
673 674 1.211818 CCGTTAGATGCTCGCTGCTC 61.212 60.000 0.00 0.00 43.37 4.26
675 676 1.800655 CGTTAGATGCTCGCTGCTCTT 60.801 52.381 0.00 0.00 43.37 2.85
907 918 2.177669 CCTCCCTCCTTGATCTCTCTCT 59.822 54.545 0.00 0.00 0.00 3.10
908 919 3.490348 CTCCCTCCTTGATCTCTCTCTC 58.510 54.545 0.00 0.00 0.00 3.20
909 920 3.130450 TCCCTCCTTGATCTCTCTCTCT 58.870 50.000 0.00 0.00 0.00 3.10
1022 2613 1.525923 CTCCTCCGTCCTCCGACTA 59.474 63.158 0.00 0.00 39.56 2.59
1030 2665 0.945813 GTCCTCCGACTATGTCTCCG 59.054 60.000 0.00 0.00 35.99 4.63
1430 3146 7.863375 GCTTAGAGGAGTATAGTATGTGTGTTG 59.137 40.741 0.00 0.00 0.00 3.33
1431 3147 6.716934 AGAGGAGTATAGTATGTGTGTTGG 57.283 41.667 0.00 0.00 0.00 3.77
1432 3148 6.432581 AGAGGAGTATAGTATGTGTGTTGGA 58.567 40.000 0.00 0.00 0.00 3.53
1452 3172 3.973305 GGAGAGAGAGAGGGATGGAAAAT 59.027 47.826 0.00 0.00 0.00 1.82
1580 3324 7.721399 ACCAAGAGATAAACTGTCAATTTGTCT 59.279 33.333 5.82 5.82 39.40 3.41
1645 3389 5.879237 TGAGCGGCTAATTGTCAAATTTAG 58.121 37.500 0.60 0.00 37.23 1.85
1711 3455 4.472833 ACTCCTCTATTGATGTGGCTCTTT 59.527 41.667 0.00 0.00 0.00 2.52
3399 5153 0.179004 TGTCGGCCTTGGTGATTGTT 60.179 50.000 0.00 0.00 0.00 2.83
3400 5154 0.521735 GTCGGCCTTGGTGATTGTTC 59.478 55.000 0.00 0.00 0.00 3.18
3401 5155 0.608035 TCGGCCTTGGTGATTGTTCC 60.608 55.000 0.00 0.00 0.00 3.62
3686 5441 0.314935 CACTTGGTCCATGTTGTGCC 59.685 55.000 7.67 0.00 0.00 5.01
3751 5506 5.066505 CCCATAGCCTACATGTTTTCAGTTC 59.933 44.000 2.30 0.00 0.00 3.01
3755 5510 5.876357 AGCCTACATGTTTTCAGTTCCTAA 58.124 37.500 2.30 0.00 0.00 2.69
4281 6898 7.385267 TGCTAGCCATTTTTGTTTGTGAATAT 58.615 30.769 13.29 0.00 0.00 1.28
4290 6907 5.543507 TTGTTTGTGAATATGCAAGGGTT 57.456 34.783 0.00 0.00 0.00 4.11
6000 10442 1.634973 TGGATGCATGGAGGAGTTCAA 59.365 47.619 2.46 0.00 0.00 2.69
6135 10577 1.740025 GCAGAAGGGAACTACATGTGC 59.260 52.381 9.11 0.00 42.68 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.641645 TTGCACAGCCAGGACGGG 62.642 66.667 0.00 0.00 34.06 5.28
3 4 3.052082 CTTGCACAGCCAGGACGG 61.052 66.667 0.00 0.00 38.11 4.79
4 5 3.730761 GCTTGCACAGCCAGGACG 61.731 66.667 9.03 0.00 43.65 4.79
27 28 3.537874 GGACCACTCCCGGATCCG 61.538 72.222 27.65 27.65 39.44 4.18
28 29 1.993391 TTGGACCACTCCCGGATCC 60.993 63.158 0.73 0.00 35.34 3.36
29 30 1.221021 GTTGGACCACTCCCGGATC 59.779 63.158 0.73 0.00 35.34 3.36
30 31 2.298661 GGTTGGACCACTCCCGGAT 61.299 63.158 0.73 0.00 38.42 4.18
31 32 2.926242 GGTTGGACCACTCCCGGA 60.926 66.667 0.73 0.00 38.42 5.14
32 33 2.928396 AGGTTGGACCACTCCCGG 60.928 66.667 10.33 0.00 41.95 5.73
33 34 2.347490 CAGGTTGGACCACTCCCG 59.653 66.667 10.33 0.00 41.95 5.14
34 35 1.073199 CACAGGTTGGACCACTCCC 59.927 63.158 10.33 4.04 41.95 4.30
35 36 1.600916 GCACAGGTTGGACCACTCC 60.601 63.158 0.00 0.00 41.95 3.85
36 37 0.250901 ATGCACAGGTTGGACCACTC 60.251 55.000 0.00 0.00 41.95 3.51
37 38 0.538057 CATGCACAGGTTGGACCACT 60.538 55.000 0.00 0.00 41.95 4.00
38 39 1.526575 CCATGCACAGGTTGGACCAC 61.527 60.000 0.00 0.00 41.95 4.16
39 40 1.228521 CCATGCACAGGTTGGACCA 60.229 57.895 0.00 0.00 41.95 4.02
40 41 2.639327 GCCATGCACAGGTTGGACC 61.639 63.158 7.48 0.00 38.99 4.46
41 42 2.964978 GCCATGCACAGGTTGGAC 59.035 61.111 7.48 0.00 31.94 4.02
42 43 2.672651 CGCCATGCACAGGTTGGA 60.673 61.111 7.48 0.00 31.94 3.53
43 44 4.424566 GCGCCATGCACAGGTTGG 62.425 66.667 0.00 3.98 45.45 3.77
52 53 3.275338 GGAGTAGCAGCGCCATGC 61.275 66.667 13.33 13.33 46.88 4.06
53 54 0.745845 AAAGGAGTAGCAGCGCCATG 60.746 55.000 2.29 0.00 0.00 3.66
54 55 0.462759 GAAAGGAGTAGCAGCGCCAT 60.463 55.000 2.29 0.00 0.00 4.40
55 56 1.079127 GAAAGGAGTAGCAGCGCCA 60.079 57.895 2.29 0.00 0.00 5.69
56 57 1.815840 GGAAAGGAGTAGCAGCGCC 60.816 63.158 2.29 0.00 0.00 6.53
57 58 2.167861 CGGAAAGGAGTAGCAGCGC 61.168 63.158 0.00 0.00 0.00 5.92
58 59 2.167861 GCGGAAAGGAGTAGCAGCG 61.168 63.158 0.00 0.00 0.00 5.18
59 60 1.815840 GGCGGAAAGGAGTAGCAGC 60.816 63.158 0.00 0.00 0.00 5.25
60 61 1.519455 CGGCGGAAAGGAGTAGCAG 60.519 63.158 0.00 0.00 0.00 4.24
61 62 2.577059 CGGCGGAAAGGAGTAGCA 59.423 61.111 0.00 0.00 0.00 3.49
62 63 2.202892 CCGGCGGAAAGGAGTAGC 60.203 66.667 24.41 0.00 0.00 3.58
63 64 1.896122 AACCCGGCGGAAAGGAGTAG 61.896 60.000 30.79 9.73 0.00 2.57
64 65 1.914764 AACCCGGCGGAAAGGAGTA 60.915 57.895 30.79 0.00 0.00 2.59
65 66 3.246880 AACCCGGCGGAAAGGAGT 61.247 61.111 30.79 13.03 0.00 3.85
66 67 2.746277 CAACCCGGCGGAAAGGAG 60.746 66.667 30.79 12.25 0.00 3.69
67 68 3.562232 ACAACCCGGCGGAAAGGA 61.562 61.111 30.79 0.00 0.00 3.36
68 69 3.361977 CACAACCCGGCGGAAAGG 61.362 66.667 30.79 13.54 0.00 3.11
69 70 3.361977 CCACAACCCGGCGGAAAG 61.362 66.667 30.79 18.32 0.00 2.62
70 71 3.198953 ATCCACAACCCGGCGGAAA 62.199 57.895 30.79 4.34 0.00 3.13
71 72 3.615509 GATCCACAACCCGGCGGAA 62.616 63.158 30.79 3.56 0.00 4.30
72 73 4.090588 GATCCACAACCCGGCGGA 62.091 66.667 30.79 5.38 0.00 5.54
78 79 2.438434 CGCTGGGATCCACAACCC 60.438 66.667 15.23 0.00 45.74 4.11
79 80 2.438434 CCGCTGGGATCCACAACC 60.438 66.667 15.23 0.00 34.06 3.77
80 81 3.134127 GCCGCTGGGATCCACAAC 61.134 66.667 15.23 3.93 34.06 3.32
81 82 2.891941 GATGCCGCTGGGATCCACAA 62.892 60.000 15.23 0.00 43.38 3.33
82 83 3.405093 GATGCCGCTGGGATCCACA 62.405 63.158 15.23 8.39 43.38 4.17
83 84 2.592861 GATGCCGCTGGGATCCAC 60.593 66.667 15.23 3.53 43.38 4.02
87 88 1.344953 TACCTTGATGCCGCTGGGAT 61.345 55.000 1.53 1.53 36.16 3.85
88 89 1.971505 CTACCTTGATGCCGCTGGGA 61.972 60.000 0.00 0.00 34.06 4.37
89 90 1.524621 CTACCTTGATGCCGCTGGG 60.525 63.158 0.00 0.00 0.00 4.45
90 91 1.524621 CCTACCTTGATGCCGCTGG 60.525 63.158 0.00 0.00 0.00 4.85
91 92 0.531532 CTCCTACCTTGATGCCGCTG 60.532 60.000 0.00 0.00 0.00 5.18
92 93 0.687757 TCTCCTACCTTGATGCCGCT 60.688 55.000 0.00 0.00 0.00 5.52
93 94 0.178068 TTCTCCTACCTTGATGCCGC 59.822 55.000 0.00 0.00 0.00 6.53
94 95 1.757118 TCTTCTCCTACCTTGATGCCG 59.243 52.381 0.00 0.00 0.00 5.69
95 96 2.484594 GCTCTTCTCCTACCTTGATGCC 60.485 54.545 0.00 0.00 0.00 4.40
96 97 2.433970 AGCTCTTCTCCTACCTTGATGC 59.566 50.000 0.00 0.00 0.00 3.91
97 98 5.782047 CATAGCTCTTCTCCTACCTTGATG 58.218 45.833 0.00 0.00 0.00 3.07
98 99 4.283212 GCATAGCTCTTCTCCTACCTTGAT 59.717 45.833 0.00 0.00 0.00 2.57
99 100 3.639094 GCATAGCTCTTCTCCTACCTTGA 59.361 47.826 0.00 0.00 0.00 3.02
100 101 3.386078 TGCATAGCTCTTCTCCTACCTTG 59.614 47.826 0.00 0.00 0.00 3.61
101 102 3.386402 GTGCATAGCTCTTCTCCTACCTT 59.614 47.826 0.00 0.00 0.00 3.50
102 103 2.962421 GTGCATAGCTCTTCTCCTACCT 59.038 50.000 0.00 0.00 0.00 3.08
103 104 2.695666 TGTGCATAGCTCTTCTCCTACC 59.304 50.000 0.00 0.00 0.00 3.18
104 105 4.116238 GTTGTGCATAGCTCTTCTCCTAC 58.884 47.826 0.00 0.00 0.00 3.18
105 106 3.133003 GGTTGTGCATAGCTCTTCTCCTA 59.867 47.826 0.00 0.00 0.00 2.94
106 107 2.093235 GGTTGTGCATAGCTCTTCTCCT 60.093 50.000 0.00 0.00 0.00 3.69
107 108 2.284190 GGTTGTGCATAGCTCTTCTCC 58.716 52.381 0.00 0.00 0.00 3.71
108 109 1.929836 CGGTTGTGCATAGCTCTTCTC 59.070 52.381 0.00 0.00 0.00 2.87
109 110 2.009042 GCGGTTGTGCATAGCTCTTCT 61.009 52.381 0.00 0.00 34.15 2.85
110 111 0.375106 GCGGTTGTGCATAGCTCTTC 59.625 55.000 0.00 0.00 34.15 2.87
111 112 1.361668 CGCGGTTGTGCATAGCTCTT 61.362 55.000 0.00 0.00 34.15 2.85
112 113 1.811266 CGCGGTTGTGCATAGCTCT 60.811 57.895 0.00 0.00 34.15 4.09
113 114 2.025359 GACGCGGTTGTGCATAGCTC 62.025 60.000 12.47 0.00 34.15 4.09
114 115 2.047274 ACGCGGTTGTGCATAGCT 60.047 55.556 12.47 0.00 34.15 3.32
115 116 2.399611 GACGCGGTTGTGCATAGC 59.600 61.111 12.47 0.00 34.15 2.97
116 117 2.695055 CGACGCGGTTGTGCATAG 59.305 61.111 12.47 0.00 34.15 2.23
117 118 3.483665 GCGACGCGGTTGTGCATA 61.484 61.111 12.47 0.00 34.15 3.14
124 125 4.415332 ATCACGAGCGACGCGGTT 62.415 61.111 15.18 0.00 46.94 4.44
126 127 2.711185 TATCATCACGAGCGACGCGG 62.711 60.000 15.18 13.11 46.94 6.46
127 128 1.368850 TATCATCACGAGCGACGCG 60.369 57.895 15.18 3.53 46.94 6.01
128 129 0.591488 TGTATCATCACGAGCGACGC 60.591 55.000 13.03 13.03 46.94 5.19
130 131 3.000082 TCATGTATCATCACGAGCGAC 58.000 47.619 0.00 0.00 0.00 5.19
131 132 3.372060 GTTCATGTATCATCACGAGCGA 58.628 45.455 0.00 0.00 0.00 4.93
132 133 2.151924 CGTTCATGTATCATCACGAGCG 59.848 50.000 0.00 0.00 29.93 5.03
133 134 2.472861 CCGTTCATGTATCATCACGAGC 59.527 50.000 10.60 0.00 0.00 5.03
134 135 2.472861 GCCGTTCATGTATCATCACGAG 59.527 50.000 10.60 0.00 0.00 4.18
135 136 2.469826 GCCGTTCATGTATCATCACGA 58.530 47.619 10.60 0.00 0.00 4.35
136 137 1.190103 CGCCGTTCATGTATCATCACG 59.810 52.381 0.00 0.00 0.00 4.35
137 138 1.526887 CCGCCGTTCATGTATCATCAC 59.473 52.381 0.00 0.00 0.00 3.06
138 139 1.410882 TCCGCCGTTCATGTATCATCA 59.589 47.619 0.00 0.00 0.00 3.07
139 140 1.792949 GTCCGCCGTTCATGTATCATC 59.207 52.381 0.00 0.00 0.00 2.92
140 141 1.540363 GGTCCGCCGTTCATGTATCAT 60.540 52.381 0.00 0.00 0.00 2.45
141 142 0.179094 GGTCCGCCGTTCATGTATCA 60.179 55.000 0.00 0.00 0.00 2.15
142 143 0.179094 TGGTCCGCCGTTCATGTATC 60.179 55.000 0.00 0.00 37.67 2.24
143 144 0.179084 CTGGTCCGCCGTTCATGTAT 60.179 55.000 0.00 0.00 37.67 2.29
144 145 1.216977 CTGGTCCGCCGTTCATGTA 59.783 57.895 0.00 0.00 37.67 2.29
145 146 2.047274 CTGGTCCGCCGTTCATGT 60.047 61.111 0.00 0.00 37.67 3.21
146 147 2.819595 CCTGGTCCGCCGTTCATG 60.820 66.667 0.00 0.00 37.67 3.07
147 148 2.890766 AACCTGGTCCGCCGTTCAT 61.891 57.895 0.00 0.00 37.67 2.57
148 149 3.552384 AACCTGGTCCGCCGTTCA 61.552 61.111 0.00 0.00 37.67 3.18
149 150 3.047877 CAACCTGGTCCGCCGTTC 61.048 66.667 0.00 0.00 37.67 3.95
150 151 3.530910 CTCAACCTGGTCCGCCGTT 62.531 63.158 0.00 0.00 37.67 4.44
151 152 4.003788 CTCAACCTGGTCCGCCGT 62.004 66.667 0.00 0.00 37.67 5.68
152 153 4.760047 CCTCAACCTGGTCCGCCG 62.760 72.222 0.00 0.00 37.67 6.46
155 156 4.410400 GGGCCTCAACCTGGTCCG 62.410 72.222 0.84 0.00 39.78 4.79
157 158 1.566298 ATGAGGGCCTCAACCTGGTC 61.566 60.000 37.86 8.57 44.04 4.02
158 159 1.542375 ATGAGGGCCTCAACCTGGT 60.542 57.895 37.86 19.35 44.04 4.00
159 160 1.225704 GATGAGGGCCTCAACCTGG 59.774 63.158 37.86 0.00 44.04 4.45
160 161 0.329261 TTGATGAGGGCCTCAACCTG 59.671 55.000 37.86 0.00 44.04 4.00
161 162 1.075601 TTTGATGAGGGCCTCAACCT 58.924 50.000 37.86 23.48 44.04 3.50
162 163 1.177401 GTTTGATGAGGGCCTCAACC 58.823 55.000 37.86 29.99 44.04 3.77
163 164 2.087646 GAGTTTGATGAGGGCCTCAAC 58.912 52.381 37.86 34.02 44.04 3.18
164 165 1.339055 CGAGTTTGATGAGGGCCTCAA 60.339 52.381 37.86 21.69 44.04 3.02
165 166 0.250234 CGAGTTTGATGAGGGCCTCA 59.750 55.000 36.61 36.61 44.99 3.86
166 167 0.250513 ACGAGTTTGATGAGGGCCTC 59.749 55.000 26.95 26.95 0.00 4.70
167 168 0.036010 CACGAGTTTGATGAGGGCCT 60.036 55.000 5.25 5.25 0.00 5.19
168 169 0.036388 TCACGAGTTTGATGAGGGCC 60.036 55.000 0.00 0.00 0.00 5.80
169 170 1.936547 GATCACGAGTTTGATGAGGGC 59.063 52.381 0.00 0.00 36.30 5.19
170 171 3.118992 TCAGATCACGAGTTTGATGAGGG 60.119 47.826 0.00 0.00 36.30 4.30
171 172 3.862267 GTCAGATCACGAGTTTGATGAGG 59.138 47.826 0.00 0.00 36.30 3.86
172 173 4.742417 AGTCAGATCACGAGTTTGATGAG 58.258 43.478 0.00 0.00 36.30 2.90
173 174 4.218417 TGAGTCAGATCACGAGTTTGATGA 59.782 41.667 0.00 0.00 36.30 2.92
174 175 4.488879 TGAGTCAGATCACGAGTTTGATG 58.511 43.478 0.00 0.00 36.30 3.07
175 176 4.460731 TCTGAGTCAGATCACGAGTTTGAT 59.539 41.667 19.10 0.00 39.02 2.57
176 177 3.821033 TCTGAGTCAGATCACGAGTTTGA 59.179 43.478 19.10 0.00 35.39 2.69
177 178 4.165036 CTCTGAGTCAGATCACGAGTTTG 58.835 47.826 22.90 3.96 39.92 2.93
178 179 3.823873 ACTCTGAGTCAGATCACGAGTTT 59.176 43.478 22.90 0.00 39.92 2.66
179 180 3.417101 ACTCTGAGTCAGATCACGAGTT 58.583 45.455 22.90 0.00 39.92 3.01
180 181 3.066291 ACTCTGAGTCAGATCACGAGT 57.934 47.619 22.90 13.20 39.92 4.18
181 182 3.935828 TGTACTCTGAGTCAGATCACGAG 59.064 47.826 22.90 12.57 39.92 4.18
182 183 3.939066 TGTACTCTGAGTCAGATCACGA 58.061 45.455 22.90 11.19 39.92 4.35
183 184 4.657055 CTTGTACTCTGAGTCAGATCACG 58.343 47.826 22.90 13.62 39.92 4.35
184 185 4.420168 GCTTGTACTCTGAGTCAGATCAC 58.580 47.826 22.90 21.14 39.92 3.06
185 186 3.445450 GGCTTGTACTCTGAGTCAGATCA 59.555 47.826 22.90 17.92 39.92 2.92
186 187 3.181480 GGGCTTGTACTCTGAGTCAGATC 60.181 52.174 22.90 15.82 39.92 2.75
187 188 2.763448 GGGCTTGTACTCTGAGTCAGAT 59.237 50.000 22.90 14.92 39.92 2.90
188 189 2.171840 GGGCTTGTACTCTGAGTCAGA 58.828 52.381 21.46 21.46 38.25 3.27
189 190 1.895798 TGGGCTTGTACTCTGAGTCAG 59.104 52.381 14.62 14.36 0.00 3.51
190 191 2.009681 TGGGCTTGTACTCTGAGTCA 57.990 50.000 14.62 9.44 0.00 3.41
191 192 3.055819 TCAATGGGCTTGTACTCTGAGTC 60.056 47.826 14.62 6.92 36.20 3.36
192 193 2.906389 TCAATGGGCTTGTACTCTGAGT 59.094 45.455 15.57 15.57 36.20 3.41
193 194 3.616956 TCAATGGGCTTGTACTCTGAG 57.383 47.619 2.45 2.45 36.20 3.35
194 195 3.869912 GCTTCAATGGGCTTGTACTCTGA 60.870 47.826 0.00 0.00 36.20 3.27
195 196 2.421424 GCTTCAATGGGCTTGTACTCTG 59.579 50.000 0.00 0.00 36.20 3.35
196 197 2.716217 GCTTCAATGGGCTTGTACTCT 58.284 47.619 0.00 0.00 36.20 3.24
197 198 1.398390 CGCTTCAATGGGCTTGTACTC 59.602 52.381 0.00 0.00 36.20 2.59
198 199 1.453155 CGCTTCAATGGGCTTGTACT 58.547 50.000 0.00 0.00 36.20 2.73
199 200 0.451783 CCGCTTCAATGGGCTTGTAC 59.548 55.000 0.00 0.00 36.20 2.90
200 201 1.312371 GCCGCTTCAATGGGCTTGTA 61.312 55.000 0.00 0.00 43.52 2.41
201 202 2.639327 GCCGCTTCAATGGGCTTGT 61.639 57.895 0.00 0.00 43.52 3.16
202 203 2.182537 GCCGCTTCAATGGGCTTG 59.817 61.111 0.00 0.00 43.52 4.01
203 204 3.443045 CGCCGCTTCAATGGGCTT 61.443 61.111 0.00 0.00 44.68 4.35
204 205 4.408821 TCGCCGCTTCAATGGGCT 62.409 61.111 0.00 0.00 44.68 5.19
205 206 4.179579 GTCGCCGCTTCAATGGGC 62.180 66.667 0.00 0.00 43.42 5.36
206 207 2.436646 AGTCGCCGCTTCAATGGG 60.437 61.111 0.00 0.00 0.00 4.00
207 208 2.034879 ACAGTCGCCGCTTCAATGG 61.035 57.895 0.00 0.00 0.00 3.16
208 209 1.133253 CACAGTCGCCGCTTCAATG 59.867 57.895 0.00 0.00 0.00 2.82
209 210 2.034879 CCACAGTCGCCGCTTCAAT 61.035 57.895 0.00 0.00 0.00 2.57
210 211 2.664851 CCACAGTCGCCGCTTCAA 60.665 61.111 0.00 0.00 0.00 2.69
211 212 3.923864 ACCACAGTCGCCGCTTCA 61.924 61.111 0.00 0.00 0.00 3.02
212 213 3.414700 CACCACAGTCGCCGCTTC 61.415 66.667 0.00 0.00 0.00 3.86
213 214 3.750373 AACACCACAGTCGCCGCTT 62.750 57.895 0.00 0.00 0.00 4.68
214 215 4.235762 AACACCACAGTCGCCGCT 62.236 61.111 0.00 0.00 0.00 5.52
215 216 4.012895 CAACACCACAGTCGCCGC 62.013 66.667 0.00 0.00 0.00 6.53
216 217 3.345808 CCAACACCACAGTCGCCG 61.346 66.667 0.00 0.00 0.00 6.46
217 218 3.660111 GCCAACACCACAGTCGCC 61.660 66.667 0.00 0.00 0.00 5.54
218 219 2.896801 CTGCCAACACCACAGTCGC 61.897 63.158 0.00 0.00 0.00 5.19
219 220 1.224069 CTCTGCCAACACCACAGTCG 61.224 60.000 0.00 0.00 33.12 4.18
220 221 0.886490 CCTCTGCCAACACCACAGTC 60.886 60.000 0.00 0.00 33.12 3.51
221 222 1.149174 CCTCTGCCAACACCACAGT 59.851 57.895 0.00 0.00 33.12 3.55
222 223 1.149174 ACCTCTGCCAACACCACAG 59.851 57.895 0.00 0.00 0.00 3.66
223 224 1.152984 CACCTCTGCCAACACCACA 60.153 57.895 0.00 0.00 0.00 4.17
224 225 1.898574 CCACCTCTGCCAACACCAC 60.899 63.158 0.00 0.00 0.00 4.16
225 226 2.055689 CTCCACCTCTGCCAACACCA 62.056 60.000 0.00 0.00 0.00 4.17
226 227 1.302832 CTCCACCTCTGCCAACACC 60.303 63.158 0.00 0.00 0.00 4.16
227 228 1.968540 GCTCCACCTCTGCCAACAC 60.969 63.158 0.00 0.00 0.00 3.32
228 229 0.835971 TAGCTCCACCTCTGCCAACA 60.836 55.000 0.00 0.00 0.00 3.33
229 230 0.107945 CTAGCTCCACCTCTGCCAAC 60.108 60.000 0.00 0.00 0.00 3.77
230 231 1.903877 GCTAGCTCCACCTCTGCCAA 61.904 60.000 7.70 0.00 0.00 4.52
231 232 2.362369 GCTAGCTCCACCTCTGCCA 61.362 63.158 7.70 0.00 0.00 4.92
232 233 2.308968 CTGCTAGCTCCACCTCTGCC 62.309 65.000 17.23 0.00 0.00 4.85
233 234 1.143620 CTGCTAGCTCCACCTCTGC 59.856 63.158 17.23 0.00 0.00 4.26
234 235 1.143620 GCTGCTAGCTCCACCTCTG 59.856 63.158 17.23 0.00 38.45 3.35
235 236 3.627690 GCTGCTAGCTCCACCTCT 58.372 61.111 17.23 0.00 38.45 3.69
244 245 0.541863 TTCCCCTACAAGCTGCTAGC 59.458 55.000 8.10 8.10 42.84 3.42
245 246 2.435805 TCATTCCCCTACAAGCTGCTAG 59.564 50.000 0.90 0.00 0.00 3.42
246 247 2.477245 TCATTCCCCTACAAGCTGCTA 58.523 47.619 0.90 0.00 0.00 3.49
247 248 1.289160 TCATTCCCCTACAAGCTGCT 58.711 50.000 0.00 0.00 0.00 4.24
248 249 2.019984 CTTCATTCCCCTACAAGCTGC 58.980 52.381 0.00 0.00 0.00 5.25
249 250 3.634397 TCTTCATTCCCCTACAAGCTG 57.366 47.619 0.00 0.00 0.00 4.24
250 251 3.623453 GCTTCTTCATTCCCCTACAAGCT 60.623 47.826 0.00 0.00 33.68 3.74
251 252 2.685388 GCTTCTTCATTCCCCTACAAGC 59.315 50.000 0.00 0.00 0.00 4.01
252 253 4.227864 AGCTTCTTCATTCCCCTACAAG 57.772 45.455 0.00 0.00 0.00 3.16
253 254 4.042809 TGAAGCTTCTTCATTCCCCTACAA 59.957 41.667 26.09 0.00 0.00 2.41
254 255 3.587061 TGAAGCTTCTTCATTCCCCTACA 59.413 43.478 26.09 0.00 0.00 2.74
255 256 4.222124 TGAAGCTTCTTCATTCCCCTAC 57.778 45.455 26.09 0.00 0.00 3.18
256 257 4.141390 GGATGAAGCTTCTTCATTCCCCTA 60.141 45.833 31.80 10.15 39.08 3.53
257 258 3.372458 GGATGAAGCTTCTTCATTCCCCT 60.372 47.826 31.80 0.74 39.08 4.79
258 259 2.954989 GGATGAAGCTTCTTCATTCCCC 59.045 50.000 31.80 17.70 39.08 4.81
259 260 2.615912 CGGATGAAGCTTCTTCATTCCC 59.384 50.000 31.80 19.81 39.08 3.97
260 261 2.032675 GCGGATGAAGCTTCTTCATTCC 59.967 50.000 31.80 23.64 39.08 3.01
261 262 2.286067 CGCGGATGAAGCTTCTTCATTC 60.286 50.000 31.80 21.91 39.08 2.67
262 263 1.667724 CGCGGATGAAGCTTCTTCATT 59.332 47.619 31.80 13.18 39.08 2.57
263 264 1.293924 CGCGGATGAAGCTTCTTCAT 58.706 50.000 31.80 18.94 41.43 2.57
264 265 0.740868 CCGCGGATGAAGCTTCTTCA 60.741 55.000 31.80 15.34 34.18 3.02
265 266 2.009888 CCGCGGATGAAGCTTCTTC 58.990 57.895 26.43 26.43 0.00 2.87
266 267 2.109126 GCCGCGGATGAAGCTTCTT 61.109 57.895 33.48 20.33 0.00 2.52
267 268 2.512515 GCCGCGGATGAAGCTTCT 60.513 61.111 33.48 12.48 0.00 2.85
268 269 3.577313 GGCCGCGGATGAAGCTTC 61.577 66.667 33.48 19.89 0.00 3.86
269 270 3.704231 ATGGCCGCGGATGAAGCTT 62.704 57.895 33.48 0.00 0.00 3.74
270 271 4.181010 ATGGCCGCGGATGAAGCT 62.181 61.111 33.48 1.65 0.00 3.74
271 272 3.957535 CATGGCCGCGGATGAAGC 61.958 66.667 33.48 12.45 0.00 3.86
272 273 1.598962 ATCATGGCCGCGGATGAAG 60.599 57.895 33.48 14.15 32.43 3.02
273 274 1.893335 CATCATGGCCGCGGATGAA 60.893 57.895 33.48 14.40 40.61 2.57
274 275 2.281002 CATCATGGCCGCGGATGA 60.281 61.111 33.48 29.06 40.61 2.92
275 276 4.034258 GCATCATGGCCGCGGATG 62.034 66.667 33.48 24.60 40.99 3.51
276 277 4.567488 TGCATCATGGCCGCGGAT 62.567 61.111 33.48 12.32 0.00 4.18
279 280 3.945434 GTCTGCATCATGGCCGCG 61.945 66.667 0.00 0.00 0.00 6.46
280 281 3.945434 CGTCTGCATCATGGCCGC 61.945 66.667 0.00 0.00 0.00 6.53
281 282 2.202919 TCGTCTGCATCATGGCCG 60.203 61.111 0.00 0.00 0.00 6.13
282 283 2.541120 GCTCGTCTGCATCATGGCC 61.541 63.158 0.00 0.00 0.00 5.36
283 284 2.879070 CGCTCGTCTGCATCATGGC 61.879 63.158 0.00 0.00 0.00 4.40
284 285 2.242572 CCGCTCGTCTGCATCATGG 61.243 63.158 0.00 0.00 0.00 3.66
285 286 2.879070 GCCGCTCGTCTGCATCATG 61.879 63.158 0.00 0.00 0.00 3.07
286 287 2.587194 GCCGCTCGTCTGCATCAT 60.587 61.111 0.00 0.00 0.00 2.45
288 289 4.854784 TCGCCGCTCGTCTGCATC 62.855 66.667 0.00 0.00 39.67 3.91
307 308 2.271800 CTGGTCTCCCGAGAAAAATCG 58.728 52.381 0.00 0.00 39.48 3.34
308 309 2.236395 TCCTGGTCTCCCGAGAAAAATC 59.764 50.000 0.00 0.00 39.48 2.17
309 310 2.237392 CTCCTGGTCTCCCGAGAAAAAT 59.763 50.000 0.00 0.00 39.48 1.82
310 311 1.623811 CTCCTGGTCTCCCGAGAAAAA 59.376 52.381 0.00 0.00 39.48 1.94
311 312 1.267121 CTCCTGGTCTCCCGAGAAAA 58.733 55.000 0.00 0.00 39.48 2.29
312 313 0.614979 CCTCCTGGTCTCCCGAGAAA 60.615 60.000 0.00 0.00 39.48 2.52
313 314 1.000486 CCTCCTGGTCTCCCGAGAA 60.000 63.158 0.00 0.00 39.48 2.87
314 315 2.684104 CCTCCTGGTCTCCCGAGA 59.316 66.667 0.00 0.00 34.56 4.04
315 316 2.443016 CCCTCCTGGTCTCCCGAG 60.443 72.222 0.00 0.00 0.00 4.63
316 317 2.944954 TCCCTCCTGGTCTCCCGA 60.945 66.667 0.00 0.00 34.77 5.14
317 318 2.443016 CTCCCTCCTGGTCTCCCG 60.443 72.222 0.00 0.00 34.77 5.14
318 319 1.382009 GTCTCCCTCCTGGTCTCCC 60.382 68.421 0.00 0.00 34.77 4.30
319 320 1.755008 CGTCTCCCTCCTGGTCTCC 60.755 68.421 0.00 0.00 34.77 3.71
320 321 1.755008 CCGTCTCCCTCCTGGTCTC 60.755 68.421 0.00 0.00 34.77 3.36
321 322 2.360980 CCGTCTCCCTCCTGGTCT 59.639 66.667 0.00 0.00 34.77 3.85
322 323 2.760385 CCCGTCTCCCTCCTGGTC 60.760 72.222 0.00 0.00 34.77 4.02
323 324 4.400251 CCCCGTCTCCCTCCTGGT 62.400 72.222 0.00 0.00 34.77 4.00
324 325 2.898472 ATTCCCCGTCTCCCTCCTGG 62.898 65.000 0.00 0.00 0.00 4.45
325 326 0.105658 TATTCCCCGTCTCCCTCCTG 60.106 60.000 0.00 0.00 0.00 3.86
326 327 0.105607 GTATTCCCCGTCTCCCTCCT 60.106 60.000 0.00 0.00 0.00 3.69
327 328 0.105607 AGTATTCCCCGTCTCCCTCC 60.106 60.000 0.00 0.00 0.00 4.30
328 329 1.041437 CAGTATTCCCCGTCTCCCTC 58.959 60.000 0.00 0.00 0.00 4.30
329 330 0.398664 CCAGTATTCCCCGTCTCCCT 60.399 60.000 0.00 0.00 0.00 4.20
330 331 0.398098 TCCAGTATTCCCCGTCTCCC 60.398 60.000 0.00 0.00 0.00 4.30
331 332 1.619332 GATCCAGTATTCCCCGTCTCC 59.381 57.143 0.00 0.00 0.00 3.71
332 333 1.269998 CGATCCAGTATTCCCCGTCTC 59.730 57.143 0.00 0.00 0.00 3.36
333 334 1.329256 CGATCCAGTATTCCCCGTCT 58.671 55.000 0.00 0.00 0.00 4.18
334 335 0.317479 CCGATCCAGTATTCCCCGTC 59.683 60.000 0.00 0.00 0.00 4.79
335 336 1.119574 CCCGATCCAGTATTCCCCGT 61.120 60.000 0.00 0.00 0.00 5.28
336 337 1.671742 CCCGATCCAGTATTCCCCG 59.328 63.158 0.00 0.00 0.00 5.73
337 338 2.067197 CCCCGATCCAGTATTCCCC 58.933 63.158 0.00 0.00 0.00 4.81
338 339 1.375326 GCCCCGATCCAGTATTCCC 59.625 63.158 0.00 0.00 0.00 3.97
339 340 1.004918 CGCCCCGATCCAGTATTCC 60.005 63.158 0.00 0.00 0.00 3.01
340 341 0.038159 CTCGCCCCGATCCAGTATTC 60.038 60.000 0.00 0.00 34.61 1.75
341 342 1.472662 CCTCGCCCCGATCCAGTATT 61.473 60.000 0.00 0.00 34.61 1.89
342 343 1.908793 CCTCGCCCCGATCCAGTAT 60.909 63.158 0.00 0.00 34.61 2.12
343 344 2.520982 CCTCGCCCCGATCCAGTA 60.521 66.667 0.00 0.00 34.61 2.74
344 345 4.458829 TCCTCGCCCCGATCCAGT 62.459 66.667 0.00 0.00 34.61 4.00
345 346 3.610669 CTCCTCGCCCCGATCCAG 61.611 72.222 0.00 0.00 34.61 3.86
348 349 3.155167 AACCTCCTCGCCCCGATC 61.155 66.667 0.00 0.00 34.61 3.69
349 350 3.470888 CAACCTCCTCGCCCCGAT 61.471 66.667 0.00 0.00 34.61 4.18
353 354 4.821589 CTCGCAACCTCCTCGCCC 62.822 72.222 0.00 0.00 0.00 6.13
354 355 4.821589 CCTCGCAACCTCCTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
355 356 3.082579 ATCCTCGCAACCTCCTCGC 62.083 63.158 0.00 0.00 0.00 5.03
356 357 1.227089 CATCCTCGCAACCTCCTCG 60.227 63.158 0.00 0.00 0.00 4.63
357 358 1.144936 CCATCCTCGCAACCTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
358 359 1.306141 TCCATCCTCGCAACCTCCT 60.306 57.895 0.00 0.00 0.00 3.69
359 360 1.144936 CTCCATCCTCGCAACCTCC 59.855 63.158 0.00 0.00 0.00 4.30
360 361 0.179097 GTCTCCATCCTCGCAACCTC 60.179 60.000 0.00 0.00 0.00 3.85
361 362 1.901085 GTCTCCATCCTCGCAACCT 59.099 57.895 0.00 0.00 0.00 3.50
362 363 1.519455 CGTCTCCATCCTCGCAACC 60.519 63.158 0.00 0.00 0.00 3.77
363 364 1.078759 CACGTCTCCATCCTCGCAAC 61.079 60.000 0.00 0.00 0.00 4.17
364 365 1.215382 CACGTCTCCATCCTCGCAA 59.785 57.895 0.00 0.00 0.00 4.85
365 366 2.710902 CCACGTCTCCATCCTCGCA 61.711 63.158 0.00 0.00 0.00 5.10
366 367 2.105128 CCACGTCTCCATCCTCGC 59.895 66.667 0.00 0.00 0.00 5.03
367 368 1.753078 TCCCACGTCTCCATCCTCG 60.753 63.158 0.00 0.00 0.00 4.63
368 369 1.817209 GTCCCACGTCTCCATCCTC 59.183 63.158 0.00 0.00 0.00 3.71
369 370 2.052690 CGTCCCACGTCTCCATCCT 61.053 63.158 0.00 0.00 36.74 3.24
370 371 2.494918 CGTCCCACGTCTCCATCC 59.505 66.667 0.00 0.00 36.74 3.51
380 381 0.806884 TTCACGAACACACGTCCCAC 60.807 55.000 0.00 0.00 44.76 4.61
381 382 0.806884 GTTCACGAACACACGTCCCA 60.807 55.000 5.05 0.00 44.76 4.37
382 383 0.529119 AGTTCACGAACACACGTCCC 60.529 55.000 12.21 0.00 44.76 4.46
383 384 1.257155 GAAGTTCACGAACACACGTCC 59.743 52.381 12.21 0.00 44.76 4.79
384 385 1.072348 CGAAGTTCACGAACACACGTC 60.072 52.381 12.21 1.46 44.76 4.34
385 386 1.733389 ACGAAGTTCACGAACACACGT 60.733 47.619 12.21 14.94 43.49 4.49
386 387 0.918619 ACGAAGTTCACGAACACACG 59.081 50.000 12.21 14.41 37.78 4.49
387 388 1.005347 CCACGAAGTTCACGAACACAC 60.005 52.381 12.21 2.71 41.61 3.82
388 389 1.282817 CCACGAAGTTCACGAACACA 58.717 50.000 12.21 0.00 41.61 3.72
389 390 0.580104 CCCACGAAGTTCACGAACAC 59.420 55.000 12.21 5.18 41.61 3.32
390 391 0.176219 ACCCACGAAGTTCACGAACA 59.824 50.000 12.21 0.00 41.61 3.18
391 392 2.056577 CTACCCACGAAGTTCACGAAC 58.943 52.381 3.32 1.54 41.61 3.95
392 393 1.603678 GCTACCCACGAAGTTCACGAA 60.604 52.381 3.32 0.00 41.61 3.85
393 394 0.038892 GCTACCCACGAAGTTCACGA 60.039 55.000 3.32 0.00 41.61 4.35
394 395 1.342082 CGCTACCCACGAAGTTCACG 61.342 60.000 3.32 0.00 41.61 4.35
395 396 1.012486 CCGCTACCCACGAAGTTCAC 61.012 60.000 3.32 0.00 41.61 3.18
396 397 1.290955 CCGCTACCCACGAAGTTCA 59.709 57.895 3.32 0.00 41.61 3.18
397 398 2.098831 GCCGCTACCCACGAAGTTC 61.099 63.158 0.00 0.00 41.61 3.01
398 399 2.047560 GCCGCTACCCACGAAGTT 60.048 61.111 0.00 0.00 41.61 2.66
400 401 2.509336 CAGCCGCTACCCACGAAG 60.509 66.667 0.00 0.00 0.00 3.79
401 402 2.386064 AAACAGCCGCTACCCACGAA 62.386 55.000 0.00 0.00 0.00 3.85
402 403 2.386064 AAAACAGCCGCTACCCACGA 62.386 55.000 0.00 0.00 0.00 4.35
403 404 1.512156 AAAAACAGCCGCTACCCACG 61.512 55.000 0.00 0.00 0.00 4.94
404 405 2.337361 AAAAACAGCCGCTACCCAC 58.663 52.632 0.00 0.00 0.00 4.61
405 406 4.911901 AAAAACAGCCGCTACCCA 57.088 50.000 0.00 0.00 0.00 4.51
461 462 4.415332 CCACCTCGACGTGTCCCG 62.415 72.222 12.58 0.00 44.03 5.14
462 463 4.065281 CCCACCTCGACGTGTCCC 62.065 72.222 12.58 0.00 31.47 4.46
463 464 4.065281 CCCCACCTCGACGTGTCC 62.065 72.222 12.58 0.00 31.47 4.02
464 465 2.488087 CTTCCCCACCTCGACGTGTC 62.488 65.000 12.58 0.00 31.47 3.67
465 466 2.522436 TTCCCCACCTCGACGTGT 60.522 61.111 12.58 0.00 31.47 4.49
466 467 2.261671 CTTCCCCACCTCGACGTG 59.738 66.667 7.49 7.49 0.00 4.49
467 468 2.995574 CCTTCCCCACCTCGACGT 60.996 66.667 0.00 0.00 0.00 4.34
468 469 2.678934 TCCTTCCCCACCTCGACG 60.679 66.667 0.00 0.00 0.00 5.12
469 470 1.911766 TGTCCTTCCCCACCTCGAC 60.912 63.158 0.00 0.00 0.00 4.20
470 471 1.911766 GTGTCCTTCCCCACCTCGA 60.912 63.158 0.00 0.00 0.00 4.04
471 472 1.553690 ATGTGTCCTTCCCCACCTCG 61.554 60.000 0.00 0.00 0.00 4.63
472 473 0.035056 CATGTGTCCTTCCCCACCTC 60.035 60.000 0.00 0.00 0.00 3.85
473 474 2.078452 CATGTGTCCTTCCCCACCT 58.922 57.895 0.00 0.00 0.00 4.00
474 475 1.678970 GCATGTGTCCTTCCCCACC 60.679 63.158 0.00 0.00 0.00 4.61
475 476 1.678970 GGCATGTGTCCTTCCCCAC 60.679 63.158 0.00 0.00 0.00 4.61
476 477 1.508667 ATGGCATGTGTCCTTCCCCA 61.509 55.000 0.00 0.00 0.00 4.96
477 478 0.753111 GATGGCATGTGTCCTTCCCC 60.753 60.000 3.81 0.00 0.00 4.81
478 479 1.097547 CGATGGCATGTGTCCTTCCC 61.098 60.000 3.81 0.00 0.00 3.97
479 480 0.107703 TCGATGGCATGTGTCCTTCC 60.108 55.000 3.81 0.00 0.00 3.46
480 481 1.293924 CTCGATGGCATGTGTCCTTC 58.706 55.000 3.81 0.00 0.00 3.46
481 482 0.107508 CCTCGATGGCATGTGTCCTT 60.108 55.000 3.81 0.00 0.00 3.36
482 483 1.524002 CCTCGATGGCATGTGTCCT 59.476 57.895 3.81 0.00 0.00 3.85
483 484 1.524621 CCCTCGATGGCATGTGTCC 60.525 63.158 3.81 0.00 0.00 4.02
484 485 1.524621 CCCCTCGATGGCATGTGTC 60.525 63.158 3.81 0.00 0.00 3.67
485 486 2.257409 GACCCCTCGATGGCATGTGT 62.257 60.000 3.81 0.00 0.00 3.72
486 487 1.524621 GACCCCTCGATGGCATGTG 60.525 63.158 3.81 0.00 0.00 3.21
487 488 2.911143 GACCCCTCGATGGCATGT 59.089 61.111 3.81 0.00 0.00 3.21
488 489 2.280389 CGACCCCTCGATGGCATG 60.280 66.667 3.81 0.00 43.06 4.06
489 490 3.550431 CCGACCCCTCGATGGCAT 61.550 66.667 0.00 0.00 43.06 4.40
490 491 4.770362 TCCGACCCCTCGATGGCA 62.770 66.667 0.39 0.00 43.06 4.92
491 492 3.917760 CTCCGACCCCTCGATGGC 61.918 72.222 0.39 0.00 43.06 4.40
492 493 3.227276 CCTCCGACCCCTCGATGG 61.227 72.222 0.00 0.00 43.06 3.51
493 494 3.227276 CCCTCCGACCCCTCGATG 61.227 72.222 0.00 0.00 43.06 3.84
494 495 3.426836 TCCCTCCGACCCCTCGAT 61.427 66.667 0.00 0.00 43.06 3.59
495 496 4.124943 CTCCCTCCGACCCCTCGA 62.125 72.222 0.00 0.00 43.06 4.04
497 498 4.077180 ACCTCCCTCCGACCCCTC 62.077 72.222 0.00 0.00 0.00 4.30
498 499 4.077180 GACCTCCCTCCGACCCCT 62.077 72.222 0.00 0.00 0.00 4.79
500 501 3.951769 TTCGACCTCCCTCCGACCC 62.952 68.421 0.00 0.00 31.60 4.46
501 502 2.362120 TTCGACCTCCCTCCGACC 60.362 66.667 0.00 0.00 31.60 4.79
502 503 2.708865 GGTTCGACCTCCCTCCGAC 61.709 68.421 0.00 0.00 34.73 4.79
503 504 2.362120 GGTTCGACCTCCCTCCGA 60.362 66.667 0.00 0.00 34.73 4.55
504 505 2.017559 GATGGTTCGACCTCCCTCCG 62.018 65.000 5.77 0.00 39.58 4.63
505 506 0.976073 TGATGGTTCGACCTCCCTCC 60.976 60.000 5.77 0.00 39.58 4.30
506 507 0.175989 GTGATGGTTCGACCTCCCTC 59.824 60.000 5.77 3.22 39.58 4.30
507 508 1.605058 CGTGATGGTTCGACCTCCCT 61.605 60.000 5.77 0.00 39.58 4.20
508 509 1.153628 CGTGATGGTTCGACCTCCC 60.154 63.158 5.77 0.00 39.58 4.30
509 510 0.458025 GTCGTGATGGTTCGACCTCC 60.458 60.000 6.46 0.50 46.83 4.30
510 511 3.031660 GTCGTGATGGTTCGACCTC 57.968 57.895 6.46 2.63 46.83 3.85
514 515 1.133407 CAAACGTCGTGATGGTTCGA 58.867 50.000 0.00 0.00 0.00 3.71
515 516 1.133407 TCAAACGTCGTGATGGTTCG 58.867 50.000 0.00 0.00 0.00 3.95
516 517 3.432252 AGAATCAAACGTCGTGATGGTTC 59.568 43.478 21.19 21.19 35.87 3.62
517 518 3.399330 AGAATCAAACGTCGTGATGGTT 58.601 40.909 13.69 9.06 35.87 3.67
518 519 2.993899 GAGAATCAAACGTCGTGATGGT 59.006 45.455 13.69 6.04 35.87 3.55
519 520 2.348666 GGAGAATCAAACGTCGTGATGG 59.651 50.000 13.69 0.00 35.87 3.51
520 521 3.254060 AGGAGAATCAAACGTCGTGATG 58.746 45.455 13.69 1.52 35.87 3.07
521 522 3.594603 AGGAGAATCAAACGTCGTGAT 57.405 42.857 0.00 8.49 37.31 3.06
522 523 3.380479 AAGGAGAATCAAACGTCGTGA 57.620 42.857 0.00 4.53 36.25 4.35
523 524 5.585500 TTAAAGGAGAATCAAACGTCGTG 57.415 39.130 0.00 0.00 36.25 4.35
524 525 7.095270 ACTATTAAAGGAGAATCAAACGTCGT 58.905 34.615 0.00 0.00 36.25 4.34
525 526 7.521509 ACTATTAAAGGAGAATCAAACGTCG 57.478 36.000 0.00 0.00 36.25 5.12
526 527 9.798994 TCTACTATTAAAGGAGAATCAAACGTC 57.201 33.333 0.00 0.00 42.63 4.34
544 545 7.996644 GGCTAGCCTCTGTATCTATCTACTATT 59.003 40.741 27.17 0.00 0.00 1.73
545 546 7.128109 TGGCTAGCCTCTGTATCTATCTACTAT 59.872 40.741 33.07 0.00 36.94 2.12
546 547 6.444171 TGGCTAGCCTCTGTATCTATCTACTA 59.556 42.308 33.07 4.43 36.94 1.82
547 548 5.251932 TGGCTAGCCTCTGTATCTATCTACT 59.748 44.000 33.07 0.00 36.94 2.57
548 549 5.502079 TGGCTAGCCTCTGTATCTATCTAC 58.498 45.833 33.07 2.03 36.94 2.59
549 550 5.780958 TGGCTAGCCTCTGTATCTATCTA 57.219 43.478 33.07 5.92 36.94 1.98
550 551 4.666412 TGGCTAGCCTCTGTATCTATCT 57.334 45.455 33.07 0.00 36.94 1.98
551 552 4.770010 AGTTGGCTAGCCTCTGTATCTATC 59.230 45.833 33.07 9.74 36.94 2.08
552 553 4.746466 AGTTGGCTAGCCTCTGTATCTAT 58.254 43.478 33.07 6.57 36.94 1.98
553 554 4.145807 GAGTTGGCTAGCCTCTGTATCTA 58.854 47.826 33.07 7.98 36.94 1.98
554 555 2.962421 GAGTTGGCTAGCCTCTGTATCT 59.038 50.000 33.07 16.93 36.94 1.98
555 556 2.287909 CGAGTTGGCTAGCCTCTGTATC 60.288 54.545 33.07 19.80 36.94 2.24
594 595 0.881118 GCCAACGAAGCAGGAAATCA 59.119 50.000 0.00 0.00 0.00 2.57
647 648 1.680338 GAGCATCTAACGGCCCAAAT 58.320 50.000 0.00 0.00 0.00 2.32
667 668 1.458639 AAACCACCAGCAAGAGCAGC 61.459 55.000 0.00 0.00 45.49 5.25
673 674 0.030638 CGGTCAAAACCACCAGCAAG 59.969 55.000 0.00 0.00 46.86 4.01
675 676 2.485795 GCGGTCAAAACCACCAGCA 61.486 57.895 0.00 0.00 46.86 4.41
907 918 2.989253 TTCGTGGCGGCTGAGAGA 60.989 61.111 11.43 0.00 0.00 3.10
908 919 2.811317 GTTCGTGGCGGCTGAGAG 60.811 66.667 11.43 0.00 0.00 3.20
909 920 4.373116 GGTTCGTGGCGGCTGAGA 62.373 66.667 11.43 3.91 0.00 3.27
1022 2613 2.486191 GGAGGATGAATTGCGGAGACAT 60.486 50.000 0.00 0.00 0.00 3.06
1030 2665 2.671896 AGGGATGGAGGATGAATTGC 57.328 50.000 0.00 0.00 0.00 3.56
1430 3146 2.765689 TTCCATCCCTCTCTCTCTCC 57.234 55.000 0.00 0.00 0.00 3.71
1431 3147 6.269769 ACATATTTTCCATCCCTCTCTCTCTC 59.730 42.308 0.00 0.00 0.00 3.20
1432 3148 6.043012 CACATATTTTCCATCCCTCTCTCTCT 59.957 42.308 0.00 0.00 0.00 3.10
1452 3172 3.901222 TCTCCACTTGTTCCAGTCACATA 59.099 43.478 0.00 0.00 0.00 2.29
1580 3324 5.822519 CCCACTACAGCATAAGAAAGCATAA 59.177 40.000 0.00 0.00 0.00 1.90
3399 5153 1.765314 GCCAATTAGAGCTCCAGAGGA 59.235 52.381 10.93 0.00 0.00 3.71
3400 5154 1.202746 GGCCAATTAGAGCTCCAGAGG 60.203 57.143 10.93 7.75 0.00 3.69
3401 5155 1.539929 CGGCCAATTAGAGCTCCAGAG 60.540 57.143 10.93 0.00 0.00 3.35
3751 5506 7.387673 TGAGACATGGCGATAATACAAATTAGG 59.612 37.037 0.00 0.00 31.18 2.69
3755 5510 7.445096 TCAATGAGACATGGCGATAATACAAAT 59.555 33.333 0.00 0.00 0.00 2.32
4290 6907 3.458044 TCAGAGTAGAGAAGGCAAGGA 57.542 47.619 0.00 0.00 0.00 3.36
6000 10442 7.283127 CCATATGTAACATAACACCAGCTTCTT 59.717 37.037 1.24 0.00 30.75 2.52
6135 10577 0.738389 AGCGTTGGTGGTTCTTGTTG 59.262 50.000 0.00 0.00 0.00 3.33
6150 10592 4.988598 CGCCCAACTGGTCAGCGT 62.989 66.667 9.02 0.00 38.16 5.07
6169 10611 4.359434 TTTGTGCACTACCACTATCCAA 57.641 40.909 19.41 0.00 36.68 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.