Multiple sequence alignment - TraesCS3D01G165200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G165200 chr3D 100.000 4246 0 0 1 4246 136777166 136772921 0.000000e+00 7841.0
1 TraesCS3D01G165200 chr3D 92.857 70 5 0 635 704 118246837 118246906 7.510000e-18 102.0
2 TraesCS3D01G165200 chr3A 95.402 1718 48 12 2546 4246 154741073 154739370 0.000000e+00 2706.0
3 TraesCS3D01G165200 chr3A 95.985 1594 61 2 786 2379 154742659 154741069 0.000000e+00 2586.0
4 TraesCS3D01G165200 chr3A 85.769 780 72 12 1 772 154743393 154742645 0.000000e+00 789.0
5 TraesCS3D01G165200 chr3B 94.322 1726 47 20 2546 4246 199702322 199700623 0.000000e+00 2597.0
6 TraesCS3D01G165200 chr3B 93.975 1726 51 21 2546 4246 199927190 199925493 0.000000e+00 2562.0
7 TraesCS3D01G165200 chr3B 95.960 1584 52 5 808 2379 199928769 199927186 0.000000e+00 2560.0
8 TraesCS3D01G165200 chr3B 96.823 1385 37 4 807 2184 199704384 199703000 0.000000e+00 2307.0
9 TraesCS3D01G165200 chr3B 96.235 1381 44 5 1006 2379 200365772 200367151 0.000000e+00 2255.0
10 TraesCS3D01G165200 chr3B 92.553 1034 53 10 2546 3577 200367147 200368158 0.000000e+00 1461.0
11 TraesCS3D01G165200 chr3B 94.619 669 27 6 3576 4244 200368269 200368928 0.000000e+00 1027.0
12 TraesCS3D01G165200 chr3B 93.617 282 17 1 3 284 199704709 199704429 1.830000e-113 420.0
13 TraesCS3D01G165200 chr3B 93.617 282 17 1 3 284 199929095 199928815 1.830000e-113 420.0
14 TraesCS3D01G165200 chr3B 92.029 276 21 1 9 284 200365224 200365498 1.850000e-103 387.0
15 TraesCS3D01G165200 chr3B 96.262 214 7 1 808 1020 200365544 200365757 2.430000e-92 350.0
16 TraesCS3D01G165200 chr3B 88.532 218 23 2 283 499 823595461 823595245 3.260000e-66 263.0
17 TraesCS3D01G165200 chr3B 86.335 161 10 6 2375 2523 821493149 821492989 9.440000e-37 165.0
18 TraesCS3D01G165200 chr3B 93.519 108 7 0 2373 2480 331935477 331935370 1.220000e-35 161.0
19 TraesCS3D01G165200 chr1B 90.397 1437 110 8 958 2377 131789936 131788511 0.000000e+00 1864.0
20 TraesCS3D01G165200 chr1B 89.646 1439 110 10 956 2377 131505323 131503907 0.000000e+00 1796.0
21 TraesCS3D01G165200 chr1B 88.632 563 36 14 3251 3788 130859593 130859034 0.000000e+00 660.0
22 TraesCS3D01G165200 chr1B 88.455 563 37 14 3251 3788 130794052 130793493 0.000000e+00 654.0
23 TraesCS3D01G165200 chr1B 87.922 563 40 12 3251 3788 131380122 131379563 4.630000e-179 638.0
24 TraesCS3D01G165200 chr1B 87.411 564 42 14 3251 3788 131583426 131582866 4.660000e-174 621.0
25 TraesCS3D01G165200 chr1B 87.034 563 45 14 3251 3788 131129708 131129149 1.010000e-170 610.0
26 TraesCS3D01G165200 chr1B 92.188 384 22 5 3863 4246 131786414 131786039 1.740000e-148 536.0
27 TraesCS3D01G165200 chr1B 87.366 467 44 5 3787 4243 131582710 131582249 4.870000e-144 521.0
28 TraesCS3D01G165200 chr1B 86.809 470 48 6 3787 4246 130858878 130858413 2.930000e-141 512.0
29 TraesCS3D01G165200 chr1B 84.971 519 60 5 1861 2379 131670724 131670224 1.050000e-140 510.0
30 TraesCS3D01G165200 chr1B 88.318 428 43 5 3787 4212 131379407 131378985 1.360000e-139 507.0
31 TraesCS3D01G165200 chr1B 87.970 266 20 5 2780 3043 131503379 131503124 1.920000e-78 303.0
32 TraesCS3D01G165200 chr1B 89.767 215 20 2 3575 3788 131786834 131786621 1.500000e-69 274.0
33 TraesCS3D01G165200 chr1B 87.719 228 25 3 274 500 64126743 64126518 3.260000e-66 263.0
34 TraesCS3D01G165200 chr1B 87.440 207 15 7 2546 2752 131503909 131503714 1.190000e-55 228.0
35 TraesCS3D01G165200 chr1B 85.990 207 8 5 2546 2752 131788513 131788328 7.200000e-48 202.0
36 TraesCS3D01G165200 chr1B 79.139 302 46 11 922 1217 130742827 130742537 4.330000e-45 193.0
37 TraesCS3D01G165200 chr1B 94.059 101 6 0 3024 3124 131787364 131787264 2.040000e-33 154.0
38 TraesCS3D01G165200 chr1B 88.073 109 5 4 3024 3124 131129883 131129775 5.770000e-24 122.0
39 TraesCS3D01G165200 chr1D 88.904 1469 103 9 924 2379 80006138 80004717 0.000000e+00 1755.0
40 TraesCS3D01G165200 chr1D 87.926 1466 115 16 920 2379 79950165 79948756 0.000000e+00 1670.0
41 TraesCS3D01G165200 chr1D 92.826 460 32 1 3787 4246 79946223 79945765 0.000000e+00 665.0
42 TraesCS3D01G165200 chr1D 90.187 428 36 4 3787 4212 80001146 80000723 1.730000e-153 553.0
43 TraesCS3D01G165200 chr1D 87.500 464 28 12 3251 3686 80001947 80001486 3.790000e-140 508.0
44 TraesCS3D01G165200 chr1D 91.444 374 21 5 2754 3124 79948222 79947857 1.760000e-138 503.0
45 TraesCS3D01G165200 chr1D 90.385 364 32 3 3426 3788 79946739 79946378 3.840000e-130 475.0
46 TraesCS3D01G165200 chr1D 87.097 434 19 9 3251 3653 79947790 79947363 1.390000e-124 457.0
47 TraesCS3D01G165200 chr1D 90.647 278 17 5 3380 3653 80002757 80002485 1.120000e-95 361.0
48 TraesCS3D01G165200 chr1D 92.271 207 15 1 2546 2752 79948760 79948555 4.150000e-75 292.0
49 TraesCS3D01G165200 chr1D 88.835 206 12 3 2546 2751 80004721 80004527 4.240000e-60 243.0
50 TraesCS3D01G165200 chr1D 86.145 166 10 6 3207 3359 79946901 79946736 2.630000e-37 167.0
51 TraesCS3D01G165200 chr1D 96.040 101 4 0 3024 3124 79947000 79946900 9.440000e-37 165.0
52 TraesCS3D01G165200 chr1D 93.458 107 7 0 2374 2480 62800247 62800141 4.390000e-35 159.0
53 TraesCS3D01G165200 chr1D 93.269 104 6 1 3685 3788 80001404 80001302 7.350000e-33 152.0
54 TraesCS3D01G165200 chr1D 89.908 109 3 1 3024 3124 80002122 80002014 2.660000e-27 134.0
55 TraesCS3D01G165200 chr1D 89.157 83 7 2 623 704 196032202 196032283 7.510000e-18 102.0
56 TraesCS3D01G165200 chr1D 97.778 45 1 0 2479 2523 482768415 482768371 1.270000e-10 78.7
57 TraesCS3D01G165200 chr1A 88.193 1406 104 9 989 2379 98604580 98603222 0.000000e+00 1620.0
58 TraesCS3D01G165200 chr1A 89.783 323 18 6 3265 3577 98602514 98602197 2.380000e-107 399.0
59 TraesCS3D01G165200 chr1A 89.058 329 24 4 3927 4246 98601790 98601465 8.550000e-107 398.0
60 TraesCS3D01G165200 chr1A 86.728 324 26 4 3927 4234 98517224 98516902 1.130000e-90 344.0
61 TraesCS3D01G165200 chr1A 90.299 268 19 2 3575 3842 98517549 98517289 1.130000e-90 344.0
62 TraesCS3D01G165200 chr1A 89.552 268 21 2 3575 3842 98602115 98601855 2.450000e-87 333.0
63 TraesCS3D01G165200 chr1A 85.514 214 8 3 2546 2752 98603226 98603029 7.200000e-48 202.0
64 TraesCS3D01G165200 chr1A 90.909 66 6 0 3207 3272 98602594 98602529 5.850000e-14 89.8
65 TraesCS3D01G165200 chr1A 97.778 45 1 0 2479 2523 62391830 62391786 1.270000e-10 78.7
66 TraesCS3D01G165200 chr1A 97.778 45 1 0 2479 2523 497317056 497317012 1.270000e-10 78.7
67 TraesCS3D01G165200 chr2D 90.187 214 20 1 287 499 42874608 42874821 1.160000e-70 278.0
68 TraesCS3D01G165200 chr2D 81.159 207 26 6 505 700 633234138 633233934 2.040000e-33 154.0
69 TraesCS3D01G165200 chr2D 83.750 160 21 5 502 659 109419370 109419214 3.420000e-31 147.0
70 TraesCS3D01G165200 chr2D 83.537 164 19 5 502 659 515573410 515573571 3.420000e-31 147.0
71 TraesCS3D01G165200 chr2D 96.970 66 1 1 3116 3181 109700472 109700408 4.490000e-20 110.0
72 TraesCS3D01G165200 chr2D 92.000 75 6 0 634 708 118470150 118470224 5.810000e-19 106.0
73 TraesCS3D01G165200 chr2D 95.455 66 3 0 3122 3187 270480386 270480321 5.810000e-19 106.0
74 TraesCS3D01G165200 chr2D 94.118 68 2 2 3121 3187 114520403 114520337 7.510000e-18 102.0
75 TraesCS3D01G165200 chr2D 100.000 45 0 0 2479 2523 88309269 88309225 2.720000e-12 84.2
76 TraesCS3D01G165200 chr4A 89.450 218 21 2 283 499 621295000 621294784 1.500000e-69 274.0
77 TraesCS3D01G165200 chr4A 88.940 217 23 1 284 499 736531461 736531245 2.520000e-67 267.0
78 TraesCS3D01G165200 chr4A 94.444 108 6 0 2373 2480 17392254 17392361 2.630000e-37 167.0
79 TraesCS3D01G165200 chr4A 90.110 91 6 1 3122 3209 2980563 2980653 9.650000e-22 115.0
80 TraesCS3D01G165200 chr5D 89.401 217 22 1 284 499 440804829 440804613 5.410000e-69 272.0
81 TraesCS3D01G165200 chr5D 88.208 212 24 1 283 493 486439986 486440197 7.050000e-63 252.0
82 TraesCS3D01G165200 chr5D 97.778 45 1 0 2479 2523 12260400 12260444 1.270000e-10 78.7
83 TraesCS3D01G165200 chr2B 87.273 220 27 1 281 499 197815557 197815776 2.530000e-62 250.0
84 TraesCS3D01G165200 chr2B 87.097 217 27 1 284 499 410436349 410436133 1.180000e-60 244.0
85 TraesCS3D01G165200 chr2B 87.500 152 16 2 502 650 243578158 243578309 5.640000e-39 172.0
86 TraesCS3D01G165200 chr2B 84.568 162 20 2 502 659 683781924 683781764 5.680000e-34 156.0
87 TraesCS3D01G165200 chr7D 83.412 211 23 3 502 707 541500386 541500183 7.250000e-43 185.0
88 TraesCS3D01G165200 chr7D 95.238 105 5 0 2376 2480 452445689 452445793 2.630000e-37 167.0
89 TraesCS3D01G165200 chr7D 91.549 71 6 0 634 704 576193430 576193500 9.720000e-17 99.0
90 TraesCS3D01G165200 chr5B 84.127 189 25 2 502 685 466648078 466648266 1.210000e-40 178.0
91 TraesCS3D01G165200 chr5B 94.393 107 6 0 2374 2480 103324119 103324225 9.440000e-37 165.0
92 TraesCS3D01G165200 chr5B 94.286 105 6 0 2377 2481 442846661 442846557 1.220000e-35 161.0
93 TraesCS3D01G165200 chr5B 84.967 153 11 4 503 650 249556123 249555978 1.230000e-30 145.0
94 TraesCS3D01G165200 chr5B 92.308 91 6 1 3114 3203 591784805 591784715 1.240000e-25 128.0
95 TraesCS3D01G165200 chr5B 97.778 45 1 0 2479 2523 445998853 445998809 1.270000e-10 78.7
96 TraesCS3D01G165200 chr7A 94.595 111 6 0 2369 2479 139149911 139149801 5.640000e-39 172.0
97 TraesCS3D01G165200 chr4B 93.519 108 7 0 2373 2480 483761687 483761794 1.220000e-35 161.0
98 TraesCS3D01G165200 chr4B 96.875 32 0 1 2525 2555 642325322 642325291 8.000000e-03 52.8
99 TraesCS3D01G165200 chr6B 85.034 147 15 4 504 644 600598348 600598493 4.430000e-30 143.0
100 TraesCS3D01G165200 chr6D 94.253 87 3 2 3122 3207 389702302 389702387 9.580000e-27 132.0
101 TraesCS3D01G165200 chr2A 93.103 87 6 0 3122 3208 14286768 14286682 1.240000e-25 128.0
102 TraesCS3D01G165200 chr2A 95.455 66 3 0 3122 3187 346210465 346210400 5.810000e-19 106.0
103 TraesCS3D01G165200 chr6A 98.305 59 1 0 3123 3181 475436135 475436193 2.090000e-18 104.0
104 TraesCS3D01G165200 chr6A 97.778 45 1 0 2479 2523 322101441 322101397 1.270000e-10 78.7
105 TraesCS3D01G165200 chr6A 97.778 45 1 0 2479 2523 486271090 486271046 1.270000e-10 78.7
106 TraesCS3D01G165200 chr4D 94.030 67 3 1 3123 3189 281181826 281181891 2.700000e-17 100.0
107 TraesCS3D01G165200 chr4D 97.778 45 1 0 2479 2523 445327299 445327343 1.270000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G165200 chr3D 136772921 136777166 4245 True 7841.000000 7841 100.000000 1 4246 1 chr3D.!!$R1 4245
1 TraesCS3D01G165200 chr3A 154739370 154743393 4023 True 2027.000000 2706 92.385333 1 4246 3 chr3A.!!$R1 4245
2 TraesCS3D01G165200 chr3B 199925493 199929095 3602 True 1847.333333 2562 94.517333 3 4246 3 chr3B.!!$R5 4243
3 TraesCS3D01G165200 chr3B 199700623 199704709 4086 True 1774.666667 2597 94.920667 3 4246 3 chr3B.!!$R4 4243
4 TraesCS3D01G165200 chr3B 200365224 200368928 3704 False 1096.000000 2255 94.339600 9 4244 5 chr3B.!!$F1 4235
5 TraesCS3D01G165200 chr1B 131503124 131505323 2199 True 775.666667 1796 88.352000 956 3043 3 chr1B.!!$R8 2087
6 TraesCS3D01G165200 chr1B 130793493 130794052 559 True 654.000000 654 88.455000 3251 3788 1 chr1B.!!$R3 537
7 TraesCS3D01G165200 chr1B 131786039 131789936 3897 True 606.000000 1864 90.480200 958 4246 5 chr1B.!!$R10 3288
8 TraesCS3D01G165200 chr1B 130858413 130859593 1180 True 586.000000 660 87.720500 3251 4246 2 chr1B.!!$R5 995
9 TraesCS3D01G165200 chr1B 131378985 131380122 1137 True 572.500000 638 88.120000 3251 4212 2 chr1B.!!$R7 961
10 TraesCS3D01G165200 chr1B 131582249 131583426 1177 True 571.000000 621 87.388500 3251 4243 2 chr1B.!!$R9 992
11 TraesCS3D01G165200 chr1B 131670224 131670724 500 True 510.000000 510 84.971000 1861 2379 1 chr1B.!!$R4 518
12 TraesCS3D01G165200 chr1B 131129149 131129883 734 True 366.000000 610 87.553500 3024 3788 2 chr1B.!!$R6 764
13 TraesCS3D01G165200 chr1D 79945765 79950165 4400 True 549.250000 1670 90.516750 920 4246 8 chr1D.!!$R3 3326
14 TraesCS3D01G165200 chr1D 80000723 80006138 5415 True 529.428571 1755 89.892857 924 4212 7 chr1D.!!$R4 3288
15 TraesCS3D01G165200 chr1A 98601465 98604580 3115 True 506.966667 1620 88.834833 989 4246 6 chr1A.!!$R4 3257
16 TraesCS3D01G165200 chr1A 98516902 98517549 647 True 344.000000 344 88.513500 3575 4234 2 chr1A.!!$R3 659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 521 0.108585 TGAGCCAAGACCTTGTCCAC 59.891 55.0 8.72 0.33 38.85 4.02 F
804 836 0.521735 AGCAAACGATTCCTTTCGGC 59.478 50.0 0.00 0.00 43.33 5.54 F
2448 3044 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.0 21.98 14.59 44.74 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 3025 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.0 20.33 16.33 45.25 3.56 R
2540 3136 0.178932 AGGCAGACCCACACTGTAGA 60.179 55.0 0.00 0.00 37.64 2.59 R
3663 7397 0.320374 AAGAGAATGAACCGACGCCA 59.680 50.0 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.436115 GTTGTCTGGGTAGGCGGC 60.436 66.667 0.00 0.00 0.00 6.53
112 113 2.042464 GGGAGCCACTCTGATATGTCA 58.958 52.381 0.00 0.00 0.00 3.58
289 290 0.761802 GGTGAGAGGATAAGGCCCAG 59.238 60.000 0.00 0.00 0.00 4.45
302 303 1.667722 GCCCAGTTCTTTTGCCAGG 59.332 57.895 0.00 0.00 0.00 4.45
334 335 4.186077 TCTTCCAGAATCCGACCTCTAT 57.814 45.455 0.00 0.00 0.00 1.98
342 343 1.693627 TCCGACCTCTATCCAGCTTC 58.306 55.000 0.00 0.00 0.00 3.86
344 345 1.611491 CCGACCTCTATCCAGCTTCTC 59.389 57.143 0.00 0.00 0.00 2.87
346 347 2.751479 CGACCTCTATCCAGCTTCTCCT 60.751 54.545 0.00 0.00 0.00 3.69
347 348 3.497048 CGACCTCTATCCAGCTTCTCCTA 60.497 52.174 0.00 0.00 0.00 2.94
362 370 3.724478 TCTCCTAGAATCTTTGAGCCCA 58.276 45.455 0.00 0.00 0.00 5.36
375 383 6.644347 TCTTTGAGCCCAATTTGTTTTACAA 58.356 32.000 0.00 0.00 36.11 2.41
426 434 8.465273 ACAGGATTGTAAAATAAATAGGGCTC 57.535 34.615 0.00 0.00 35.25 4.70
430 438 9.750125 GGATTGTAAAATAAATAGGGCTCAAAG 57.250 33.333 0.00 0.00 0.00 2.77
465 474 1.075698 GGATAGGGATCGGACTCTGGA 59.924 57.143 0.00 0.00 32.28 3.86
483 492 3.620488 TGGAAGAATCCCGAGATTTTGG 58.380 45.455 0.00 0.00 45.95 3.28
495 504 4.261572 CCGAGATTTTGGCAAAAGAACTGA 60.262 41.667 27.21 6.16 33.22 3.41
512 521 0.108585 TGAGCCAAGACCTTGTCCAC 59.891 55.000 8.72 0.33 38.85 4.02
514 523 1.070786 GCCAAGACCTTGTCCACGA 59.929 57.895 8.72 0.00 38.85 4.35
517 526 0.951040 CAAGACCTTGTCCACGAGCC 60.951 60.000 1.75 0.00 35.92 4.70
518 527 2.432628 GACCTTGTCCACGAGCCG 60.433 66.667 0.00 0.00 0.00 5.52
519 528 3.934391 GACCTTGTCCACGAGCCGG 62.934 68.421 0.00 0.00 0.00 6.13
520 529 4.760047 CCTTGTCCACGAGCCGGG 62.760 72.222 2.18 0.00 0.00 5.73
538 547 3.780624 GCTCGGGCCTAGATTTCAA 57.219 52.632 9.63 0.00 0.00 2.69
545 554 1.300481 GCCTAGATTTCAAGCCCGAC 58.700 55.000 0.00 0.00 0.00 4.79
546 555 1.406887 GCCTAGATTTCAAGCCCGACA 60.407 52.381 0.00 0.00 0.00 4.35
547 556 2.555199 CCTAGATTTCAAGCCCGACAG 58.445 52.381 0.00 0.00 0.00 3.51
576 590 3.840594 CCGGGCCCGTCGTATTCA 61.841 66.667 40.52 0.00 37.81 2.57
578 592 2.580276 GGGCCCGTCGTATTCACA 59.420 61.111 5.69 0.00 0.00 3.58
579 593 1.812507 GGGCCCGTCGTATTCACAC 60.813 63.158 5.69 0.00 0.00 3.82
589 603 4.486069 CGTCGTATTCACACGTTAACGAAG 60.486 45.833 33.06 24.82 40.16 3.79
610 624 3.465403 CCCGGCCTGAGGTCTGAG 61.465 72.222 0.00 0.00 0.00 3.35
611 625 3.465403 CCGGCCTGAGGTCTGAGG 61.465 72.222 0.00 0.00 37.01 3.86
616 630 2.363018 CTGAGGTCTGAGGCCCGA 60.363 66.667 0.00 0.00 0.00 5.14
639 653 1.721487 CTTTTAGCGTGATGGGCCG 59.279 57.895 0.00 0.00 0.00 6.13
699 713 4.864334 GCCCGACAGATGGCCAGG 62.864 72.222 13.05 6.01 41.97 4.45
761 793 2.494059 GGTAGAAAGCACACAGAGCAA 58.506 47.619 0.00 0.00 0.00 3.91
762 794 2.878406 GGTAGAAAGCACACAGAGCAAA 59.122 45.455 0.00 0.00 0.00 3.68
763 795 3.304057 GGTAGAAAGCACACAGAGCAAAC 60.304 47.826 0.00 0.00 0.00 2.93
764 796 1.331756 AGAAAGCACACAGAGCAAACG 59.668 47.619 0.00 0.00 0.00 3.60
765 797 1.330521 GAAAGCACACAGAGCAAACGA 59.669 47.619 0.00 0.00 0.00 3.85
766 798 1.597742 AAGCACACAGAGCAAACGAT 58.402 45.000 0.00 0.00 0.00 3.73
767 799 1.597742 AGCACACAGAGCAAACGATT 58.402 45.000 0.00 0.00 0.00 3.34
768 800 1.532868 AGCACACAGAGCAAACGATTC 59.467 47.619 0.00 0.00 0.00 2.52
769 801 1.400242 GCACACAGAGCAAACGATTCC 60.400 52.381 0.00 0.00 0.00 3.01
770 802 2.146342 CACACAGAGCAAACGATTCCT 58.854 47.619 0.00 0.00 0.00 3.36
771 803 2.549754 CACACAGAGCAAACGATTCCTT 59.450 45.455 0.00 0.00 0.00 3.36
772 804 2.549754 ACACAGAGCAAACGATTCCTTG 59.450 45.455 0.00 0.00 0.00 3.61
773 805 2.549754 CACAGAGCAAACGATTCCTTGT 59.450 45.455 0.00 0.00 0.00 3.16
774 806 2.808543 ACAGAGCAAACGATTCCTTGTC 59.191 45.455 0.00 0.00 0.00 3.18
775 807 3.070018 CAGAGCAAACGATTCCTTGTCT 58.930 45.455 0.00 0.00 0.00 3.41
776 808 3.124297 CAGAGCAAACGATTCCTTGTCTC 59.876 47.826 0.00 0.00 0.00 3.36
777 809 3.067106 GAGCAAACGATTCCTTGTCTCA 58.933 45.455 0.00 0.00 31.61 3.27
778 810 3.476552 AGCAAACGATTCCTTGTCTCAA 58.523 40.909 0.00 0.00 0.00 3.02
779 811 3.882888 AGCAAACGATTCCTTGTCTCAAA 59.117 39.130 0.00 0.00 0.00 2.69
780 812 4.338118 AGCAAACGATTCCTTGTCTCAAAA 59.662 37.500 0.00 0.00 0.00 2.44
781 813 5.040635 GCAAACGATTCCTTGTCTCAAAAA 58.959 37.500 0.00 0.00 0.00 1.94
803 835 2.989422 AAGCAAACGATTCCTTTCGG 57.011 45.000 0.00 0.00 43.33 4.30
804 836 0.521735 AGCAAACGATTCCTTTCGGC 59.478 50.000 0.00 0.00 43.33 5.54
805 837 0.521735 GCAAACGATTCCTTTCGGCT 59.478 50.000 0.00 0.00 43.33 5.52
806 838 1.729149 GCAAACGATTCCTTTCGGCTG 60.729 52.381 0.00 0.00 43.33 4.85
825 857 2.731976 CTGAAGTGTCGAGTAAACTGCC 59.268 50.000 0.00 0.00 0.00 4.85
1525 1608 1.153369 GAACGGCTGGCTGATGCTA 60.153 57.895 8.50 0.00 39.59 3.49
1639 1722 1.079405 GATTTCGGCTGGGTCGTCA 60.079 57.895 0.00 0.00 30.45 4.35
1841 1933 1.622811 CAGAGCAAGAACCAGAGGAGT 59.377 52.381 0.00 0.00 0.00 3.85
2012 2116 1.962822 ACGTCGACGGCACTACTGA 60.963 57.895 37.89 0.00 44.95 3.41
2159 2263 2.203549 CTTCCTCCTCCCTGGCCAAC 62.204 65.000 7.01 0.00 35.26 3.77
2209 2800 2.419198 GAGGCATCGACGCTGGAT 59.581 61.111 2.49 0.00 0.00 3.41
2340 2936 2.660189 ATTTTTGGCGCCTGATTGAG 57.340 45.000 29.70 0.00 0.00 3.02
2368 2964 3.639561 TGATATGCTTCCACGTTAGGCTA 59.360 43.478 0.00 0.00 0.00 3.93
2374 2970 2.519771 TCCACGTTAGGCTAAGAGGA 57.480 50.000 7.33 12.00 0.00 3.71
2375 2971 2.376109 TCCACGTTAGGCTAAGAGGAG 58.624 52.381 7.33 2.96 0.00 3.69
2376 2972 2.100989 CCACGTTAGGCTAAGAGGAGT 58.899 52.381 7.33 0.79 0.00 3.85
2377 2973 2.159226 CCACGTTAGGCTAAGAGGAGTG 60.159 54.545 7.33 12.07 0.00 3.51
2378 2974 2.492484 CACGTTAGGCTAAGAGGAGTGT 59.508 50.000 7.33 0.00 0.00 3.55
2379 2975 3.056749 CACGTTAGGCTAAGAGGAGTGTT 60.057 47.826 7.33 0.00 0.00 3.32
2380 2976 3.056749 ACGTTAGGCTAAGAGGAGTGTTG 60.057 47.826 7.33 0.00 0.00 3.33
2381 2977 3.192844 CGTTAGGCTAAGAGGAGTGTTGA 59.807 47.826 7.33 0.00 0.00 3.18
2382 2978 4.496360 GTTAGGCTAAGAGGAGTGTTGAC 58.504 47.826 7.33 0.00 0.00 3.18
2383 2979 1.546476 AGGCTAAGAGGAGTGTTGACG 59.454 52.381 0.00 0.00 0.00 4.35
2384 2980 1.272769 GGCTAAGAGGAGTGTTGACGT 59.727 52.381 0.00 0.00 0.00 4.34
2385 2981 2.490903 GGCTAAGAGGAGTGTTGACGTA 59.509 50.000 0.00 0.00 0.00 3.57
2386 2982 3.130693 GGCTAAGAGGAGTGTTGACGTAT 59.869 47.826 0.00 0.00 0.00 3.06
2387 2983 4.337555 GGCTAAGAGGAGTGTTGACGTATA 59.662 45.833 0.00 0.00 0.00 1.47
2388 2984 5.163581 GGCTAAGAGGAGTGTTGACGTATAA 60.164 44.000 0.00 0.00 0.00 0.98
2389 2985 6.461231 GGCTAAGAGGAGTGTTGACGTATAAT 60.461 42.308 0.00 0.00 0.00 1.28
2390 2986 6.418226 GCTAAGAGGAGTGTTGACGTATAATG 59.582 42.308 0.00 0.00 0.00 1.90
2391 2987 5.916661 AGAGGAGTGTTGACGTATAATGT 57.083 39.130 0.00 0.00 0.00 2.71
2392 2988 5.651530 AGAGGAGTGTTGACGTATAATGTG 58.348 41.667 0.00 0.00 0.00 3.21
2393 2989 4.181578 AGGAGTGTTGACGTATAATGTGC 58.818 43.478 0.00 0.00 0.00 4.57
2394 2990 4.081642 AGGAGTGTTGACGTATAATGTGCT 60.082 41.667 0.00 0.00 0.00 4.40
2395 2991 4.032900 GGAGTGTTGACGTATAATGTGCTG 59.967 45.833 0.00 0.00 0.00 4.41
2396 2992 3.370978 AGTGTTGACGTATAATGTGCTGC 59.629 43.478 0.00 0.00 0.00 5.25
2397 2993 2.675844 TGTTGACGTATAATGTGCTGCC 59.324 45.455 0.00 0.00 0.00 4.85
2398 2994 2.936498 GTTGACGTATAATGTGCTGCCT 59.064 45.455 0.00 0.00 0.00 4.75
2399 2995 4.116961 GTTGACGTATAATGTGCTGCCTA 58.883 43.478 0.00 0.00 0.00 3.93
2400 2996 3.977427 TGACGTATAATGTGCTGCCTAG 58.023 45.455 0.00 0.00 0.00 3.02
2401 2997 3.383505 TGACGTATAATGTGCTGCCTAGT 59.616 43.478 0.00 0.00 0.00 2.57
2402 2998 3.978687 ACGTATAATGTGCTGCCTAGTC 58.021 45.455 0.00 0.00 0.00 2.59
2403 2999 3.637229 ACGTATAATGTGCTGCCTAGTCT 59.363 43.478 0.00 0.00 0.00 3.24
2404 3000 4.230657 CGTATAATGTGCTGCCTAGTCTC 58.769 47.826 0.00 0.00 0.00 3.36
2405 3001 4.022762 CGTATAATGTGCTGCCTAGTCTCT 60.023 45.833 0.00 0.00 0.00 3.10
2406 3002 5.508153 CGTATAATGTGCTGCCTAGTCTCTT 60.508 44.000 0.00 0.00 0.00 2.85
2407 3003 3.710209 AATGTGCTGCCTAGTCTCTTT 57.290 42.857 0.00 0.00 0.00 2.52
2408 3004 2.751166 TGTGCTGCCTAGTCTCTTTC 57.249 50.000 0.00 0.00 0.00 2.62
2409 3005 1.970640 TGTGCTGCCTAGTCTCTTTCA 59.029 47.619 0.00 0.00 0.00 2.69
2410 3006 2.568956 TGTGCTGCCTAGTCTCTTTCAT 59.431 45.455 0.00 0.00 0.00 2.57
2411 3007 3.194062 GTGCTGCCTAGTCTCTTTCATC 58.806 50.000 0.00 0.00 0.00 2.92
2412 3008 2.833943 TGCTGCCTAGTCTCTTTCATCA 59.166 45.455 0.00 0.00 0.00 3.07
2413 3009 3.118847 TGCTGCCTAGTCTCTTTCATCAG 60.119 47.826 0.00 0.00 0.00 2.90
2414 3010 3.131933 GCTGCCTAGTCTCTTTCATCAGA 59.868 47.826 0.00 0.00 0.00 3.27
2415 3011 4.202243 GCTGCCTAGTCTCTTTCATCAGAT 60.202 45.833 0.00 0.00 0.00 2.90
2416 3012 5.528043 TGCCTAGTCTCTTTCATCAGATC 57.472 43.478 0.00 0.00 0.00 2.75
2417 3013 4.037327 TGCCTAGTCTCTTTCATCAGATCG 59.963 45.833 0.00 0.00 0.00 3.69
2418 3014 4.558496 GCCTAGTCTCTTTCATCAGATCGG 60.558 50.000 0.00 0.00 0.00 4.18
2419 3015 4.582656 CCTAGTCTCTTTCATCAGATCGGT 59.417 45.833 0.00 0.00 0.00 4.69
2420 3016 5.068460 CCTAGTCTCTTTCATCAGATCGGTT 59.932 44.000 0.00 0.00 0.00 4.44
2421 3017 5.413309 AGTCTCTTTCATCAGATCGGTTT 57.587 39.130 0.00 0.00 0.00 3.27
2422 3018 5.174395 AGTCTCTTTCATCAGATCGGTTTG 58.826 41.667 0.00 0.00 0.00 2.93
2423 3019 4.932200 GTCTCTTTCATCAGATCGGTTTGT 59.068 41.667 0.00 0.00 0.00 2.83
2424 3020 5.409826 GTCTCTTTCATCAGATCGGTTTGTT 59.590 40.000 0.00 0.00 0.00 2.83
2425 3021 5.409520 TCTCTTTCATCAGATCGGTTTGTTG 59.590 40.000 0.00 0.00 0.00 3.33
2426 3022 4.455533 TCTTTCATCAGATCGGTTTGTTGG 59.544 41.667 0.00 0.00 0.00 3.77
2427 3023 3.417069 TCATCAGATCGGTTTGTTGGT 57.583 42.857 0.00 0.00 0.00 3.67
2428 3024 3.750371 TCATCAGATCGGTTTGTTGGTT 58.250 40.909 0.00 0.00 0.00 3.67
2429 3025 3.501828 TCATCAGATCGGTTTGTTGGTTG 59.498 43.478 0.00 0.00 0.00 3.77
2430 3026 1.606668 TCAGATCGGTTTGTTGGTTGC 59.393 47.619 0.00 0.00 0.00 4.17
2431 3027 1.336440 CAGATCGGTTTGTTGGTTGCA 59.664 47.619 0.00 0.00 0.00 4.08
2432 3028 2.030007 CAGATCGGTTTGTTGGTTGCAT 60.030 45.455 0.00 0.00 0.00 3.96
2433 3029 2.627699 AGATCGGTTTGTTGGTTGCATT 59.372 40.909 0.00 0.00 0.00 3.56
2434 3030 2.215907 TCGGTTTGTTGGTTGCATTG 57.784 45.000 0.00 0.00 0.00 2.82
2435 3031 1.202463 TCGGTTTGTTGGTTGCATTGG 60.202 47.619 0.00 0.00 0.00 3.16
2436 3032 0.943673 GGTTTGTTGGTTGCATTGGC 59.056 50.000 0.00 0.00 41.68 4.52
2437 3033 1.474855 GGTTTGTTGGTTGCATTGGCT 60.475 47.619 0.00 0.00 41.91 4.75
2438 3034 2.224161 GGTTTGTTGGTTGCATTGGCTA 60.224 45.455 0.00 0.00 41.91 3.93
2439 3035 3.059166 GTTTGTTGGTTGCATTGGCTAG 58.941 45.455 0.00 0.00 41.91 3.42
2440 3036 2.284754 TGTTGGTTGCATTGGCTAGA 57.715 45.000 0.00 0.00 41.91 2.43
2441 3037 2.161855 TGTTGGTTGCATTGGCTAGAG 58.838 47.619 0.00 0.00 41.91 2.43
2442 3038 1.135286 GTTGGTTGCATTGGCTAGAGC 60.135 52.381 0.00 0.00 41.91 4.09
2443 3039 0.038021 TGGTTGCATTGGCTAGAGCA 59.962 50.000 3.54 0.00 44.36 4.26
2444 3040 1.341285 TGGTTGCATTGGCTAGAGCAT 60.341 47.619 3.54 0.00 44.36 3.79
2445 3041 1.066605 GGTTGCATTGGCTAGAGCATG 59.933 52.381 3.54 0.90 44.36 4.06
2446 3042 0.742505 TTGCATTGGCTAGAGCATGC 59.257 50.000 10.51 10.51 45.25 4.06
2447 3043 2.411535 GCATTGGCTAGAGCATGCA 58.588 52.632 21.98 0.00 44.74 3.96
2448 3044 0.030369 GCATTGGCTAGAGCATGCAC 59.970 55.000 21.98 14.59 44.74 4.57
2449 3045 1.676746 CATTGGCTAGAGCATGCACT 58.323 50.000 21.45 21.45 44.36 4.40
2450 3046 2.022195 CATTGGCTAGAGCATGCACTT 58.978 47.619 22.83 8.33 44.36 3.16
2451 3047 2.205022 TTGGCTAGAGCATGCACTTT 57.795 45.000 22.83 0.00 44.36 2.66
2452 3048 2.205022 TGGCTAGAGCATGCACTTTT 57.795 45.000 22.83 0.00 44.36 2.27
2453 3049 3.348647 TGGCTAGAGCATGCACTTTTA 57.651 42.857 22.83 4.45 44.36 1.52
2454 3050 3.009723 TGGCTAGAGCATGCACTTTTAC 58.990 45.455 22.83 11.40 44.36 2.01
2455 3051 3.009723 GGCTAGAGCATGCACTTTTACA 58.990 45.455 22.83 3.70 44.36 2.41
2456 3052 3.629398 GGCTAGAGCATGCACTTTTACAT 59.371 43.478 22.83 0.00 44.36 2.29
2457 3053 4.497006 GGCTAGAGCATGCACTTTTACATG 60.497 45.833 22.83 6.41 45.19 3.21
2458 3054 4.497006 GCTAGAGCATGCACTTTTACATGG 60.497 45.833 22.83 0.32 43.13 3.66
2463 3059 4.282068 GCATGCACTTTTACATGGTATCG 58.718 43.478 14.21 0.00 43.13 2.92
2464 3060 4.035091 GCATGCACTTTTACATGGTATCGA 59.965 41.667 14.21 0.00 43.13 3.59
2465 3061 5.448496 GCATGCACTTTTACATGGTATCGAA 60.448 40.000 14.21 0.00 43.13 3.71
2466 3062 5.794687 TGCACTTTTACATGGTATCGAAG 57.205 39.130 0.00 0.00 0.00 3.79
2467 3063 4.094294 TGCACTTTTACATGGTATCGAAGC 59.906 41.667 0.00 0.00 0.00 3.86
2468 3064 4.332819 GCACTTTTACATGGTATCGAAGCT 59.667 41.667 0.00 0.00 0.00 3.74
2469 3065 5.522460 GCACTTTTACATGGTATCGAAGCTA 59.478 40.000 0.00 0.00 0.00 3.32
2470 3066 6.036735 GCACTTTTACATGGTATCGAAGCTAA 59.963 38.462 0.00 0.00 0.00 3.09
2471 3067 7.621991 CACTTTTACATGGTATCGAAGCTAAG 58.378 38.462 0.00 0.00 0.00 2.18
2472 3068 7.491372 CACTTTTACATGGTATCGAAGCTAAGA 59.509 37.037 0.00 0.00 0.00 2.10
2473 3069 7.707035 ACTTTTACATGGTATCGAAGCTAAGAG 59.293 37.037 0.00 0.00 0.00 2.85
2474 3070 4.592485 ACATGGTATCGAAGCTAAGAGG 57.408 45.455 0.00 0.00 0.00 3.69
2475 3071 3.961408 ACATGGTATCGAAGCTAAGAGGT 59.039 43.478 0.00 0.00 0.00 3.85
2476 3072 4.038162 ACATGGTATCGAAGCTAAGAGGTC 59.962 45.833 0.00 0.00 0.00 3.85
2477 3073 3.899726 TGGTATCGAAGCTAAGAGGTCT 58.100 45.455 0.00 0.00 0.00 3.85
2478 3074 4.279145 TGGTATCGAAGCTAAGAGGTCTT 58.721 43.478 0.00 0.00 39.85 3.01
2479 3075 4.098044 TGGTATCGAAGCTAAGAGGTCTTG 59.902 45.833 2.32 0.00 37.40 3.02
2480 3076 4.098196 GGTATCGAAGCTAAGAGGTCTTGT 59.902 45.833 2.32 0.00 37.40 3.16
2481 3077 4.810191 ATCGAAGCTAAGAGGTCTTGTT 57.190 40.909 2.32 0.00 37.40 2.83
2482 3078 4.602340 TCGAAGCTAAGAGGTCTTGTTT 57.398 40.909 2.32 0.00 37.40 2.83
2483 3079 5.717078 TCGAAGCTAAGAGGTCTTGTTTA 57.283 39.130 2.32 0.00 37.40 2.01
2484 3080 5.710984 TCGAAGCTAAGAGGTCTTGTTTAG 58.289 41.667 2.32 0.00 37.40 1.85
2485 3081 4.865365 CGAAGCTAAGAGGTCTTGTTTAGG 59.135 45.833 2.32 0.00 37.40 2.69
2486 3082 4.209307 AGCTAAGAGGTCTTGTTTAGGC 57.791 45.455 2.32 0.00 37.40 3.93
2493 3089 2.437413 GGTCTTGTTTAGGCCTGAAGG 58.563 52.381 17.99 6.99 45.74 3.46
2494 3090 2.039879 GGTCTTGTTTAGGCCTGAAGGA 59.960 50.000 17.99 9.32 45.74 3.36
2495 3091 3.339141 GTCTTGTTTAGGCCTGAAGGAG 58.661 50.000 17.99 13.90 37.39 3.69
2496 3092 2.087646 CTTGTTTAGGCCTGAAGGAGC 58.912 52.381 17.99 1.68 37.39 4.70
2502 3098 2.743928 GCCTGAAGGAGCCACACG 60.744 66.667 0.00 0.00 37.39 4.49
2503 3099 2.743718 CCTGAAGGAGCCACACGT 59.256 61.111 0.00 0.00 37.39 4.49
2504 3100 1.669115 CCTGAAGGAGCCACACGTG 60.669 63.158 15.48 15.48 37.39 4.49
2505 3101 1.367471 CTGAAGGAGCCACACGTGA 59.633 57.895 25.01 0.00 0.00 4.35
2506 3102 0.668706 CTGAAGGAGCCACACGTGAG 60.669 60.000 25.01 15.20 0.00 3.51
2507 3103 1.374758 GAAGGAGCCACACGTGAGG 60.375 63.158 25.64 25.64 0.00 3.86
2508 3104 2.788191 GAAGGAGCCACACGTGAGGG 62.788 65.000 29.55 25.23 43.28 4.30
2509 3105 4.394712 GGAGCCACACGTGAGGGG 62.395 72.222 29.55 23.01 40.46 4.79
2510 3106 4.394712 GAGCCACACGTGAGGGGG 62.395 72.222 29.55 20.83 40.46 5.40
2511 3107 4.954118 AGCCACACGTGAGGGGGA 62.954 66.667 29.55 0.00 44.61 4.81
2512 3108 4.394712 GCCACACGTGAGGGGGAG 62.395 72.222 29.55 7.85 44.61 4.30
2513 3109 2.923035 CCACACGTGAGGGGGAGT 60.923 66.667 25.01 0.00 44.61 3.85
2514 3110 2.343758 CACACGTGAGGGGGAGTG 59.656 66.667 25.01 3.00 44.61 3.51
2515 3111 2.122989 ACACGTGAGGGGGAGTGT 60.123 61.111 25.01 0.00 42.26 3.55
2516 3112 1.764854 ACACGTGAGGGGGAGTGTT 60.765 57.895 25.01 0.00 44.32 3.32
2517 3113 1.301716 CACGTGAGGGGGAGTGTTG 60.302 63.158 10.90 0.00 0.00 3.33
2518 3114 1.458777 ACGTGAGGGGGAGTGTTGA 60.459 57.895 0.00 0.00 0.00 3.18
2519 3115 1.004918 CGTGAGGGGGAGTGTTGAC 60.005 63.158 0.00 0.00 0.00 3.18
2520 3116 1.004918 GTGAGGGGGAGTGTTGACG 60.005 63.158 0.00 0.00 0.00 4.35
2521 3117 1.458777 TGAGGGGGAGTGTTGACGT 60.459 57.895 0.00 0.00 0.00 4.34
2522 3118 0.178955 TGAGGGGGAGTGTTGACGTA 60.179 55.000 0.00 0.00 0.00 3.57
2523 3119 0.531200 GAGGGGGAGTGTTGACGTAG 59.469 60.000 0.00 0.00 0.00 3.51
2524 3120 0.903454 AGGGGGAGTGTTGACGTAGG 60.903 60.000 0.00 0.00 0.00 3.18
2525 3121 1.595357 GGGGAGTGTTGACGTAGGG 59.405 63.158 0.00 0.00 0.00 3.53
2526 3122 1.079336 GGGAGTGTTGACGTAGGGC 60.079 63.158 0.00 0.00 0.00 5.19
2527 3123 1.542187 GGGAGTGTTGACGTAGGGCT 61.542 60.000 0.00 0.00 0.00 5.19
2528 3124 1.180029 GGAGTGTTGACGTAGGGCTA 58.820 55.000 0.00 0.00 0.00 3.93
2529 3125 1.134560 GGAGTGTTGACGTAGGGCTAG 59.865 57.143 0.00 0.00 0.00 3.42
2530 3126 2.089980 GAGTGTTGACGTAGGGCTAGA 58.910 52.381 0.00 0.00 0.00 2.43
2531 3127 2.093106 AGTGTTGACGTAGGGCTAGAG 58.907 52.381 0.00 0.00 0.00 2.43
2532 3128 0.815734 TGTTGACGTAGGGCTAGAGC 59.184 55.000 0.00 0.00 41.14 4.09
2533 3129 0.815734 GTTGACGTAGGGCTAGAGCA 59.184 55.000 3.54 0.00 44.36 4.26
2534 3130 1.409427 GTTGACGTAGGGCTAGAGCAT 59.591 52.381 3.54 0.00 44.36 3.79
2535 3131 1.032794 TGACGTAGGGCTAGAGCATG 58.967 55.000 3.54 0.00 44.36 4.06
2536 3132 0.319125 GACGTAGGGCTAGAGCATGC 60.319 60.000 10.51 10.51 44.36 4.06
2537 3133 1.043116 ACGTAGGGCTAGAGCATGCA 61.043 55.000 21.98 0.00 44.36 3.96
2538 3134 0.598680 CGTAGGGCTAGAGCATGCAC 60.599 60.000 21.98 14.59 44.36 4.57
2539 3135 0.755686 GTAGGGCTAGAGCATGCACT 59.244 55.000 21.45 21.45 45.72 4.40
2540 3136 1.139853 GTAGGGCTAGAGCATGCACTT 59.860 52.381 22.83 7.21 40.41 3.16
2541 3137 0.179936 AGGGCTAGAGCATGCACTTC 59.820 55.000 22.83 14.30 40.41 3.01
2542 3138 0.179936 GGGCTAGAGCATGCACTTCT 59.820 55.000 22.83 17.00 44.36 2.85
2543 3139 1.414181 GGGCTAGAGCATGCACTTCTA 59.586 52.381 22.83 17.21 44.36 2.10
2544 3140 2.478831 GGCTAGAGCATGCACTTCTAC 58.521 52.381 22.83 12.67 44.36 2.59
3066 5837 4.887655 GGTTAATCTGGGTAGAACAATGGG 59.112 45.833 0.00 0.00 36.32 4.00
3173 5969 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3174 5970 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3175 5971 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3180 5991 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3187 5998 5.791336 AATGGATGTATCTAGCGACAAGA 57.209 39.130 1.28 0.00 0.00 3.02
3197 6008 4.755411 TCTAGCGACAAGATTTTTCGGAT 58.245 39.130 0.00 0.00 33.28 4.18
3362 6231 8.739972 ACCTGTACCTTCAATGATGTTTTAATC 58.260 33.333 0.00 0.00 0.00 1.75
3663 7397 6.870971 TGTAGCTTCGTTTTTGGTCTAATT 57.129 33.333 0.00 0.00 0.00 1.40
3794 7776 4.784838 TCCCCCTCCATTATGACATCATAG 59.215 45.833 2.03 0.00 39.69 2.23
3844 7826 2.704725 TGCGCCTTCATTTGTTCTTC 57.295 45.000 4.18 0.00 0.00 2.87
3874 7858 0.694771 TTGAGGCAGGAATGCAGTCT 59.305 50.000 14.60 0.00 36.33 3.24
4073 8088 5.172411 GCGATGTTTTCTTTTTAAAGCGTCA 59.828 36.000 0.00 0.00 36.14 4.35
4115 8132 4.706842 AGAACAAAGTAGATGGTGTGGT 57.293 40.909 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
212 213 0.033991 CCTTCTCCTCCTCCTCGACA 60.034 60.000 0.00 0.00 0.00 4.35
289 290 2.289631 CCCCAAATCCTGGCAAAAGAAC 60.290 50.000 0.00 0.00 44.90 3.01
314 315 3.257127 GGATAGAGGTCGGATTCTGGAAG 59.743 52.174 5.54 0.00 0.00 3.46
316 317 2.177016 TGGATAGAGGTCGGATTCTGGA 59.823 50.000 5.54 0.00 0.00 3.86
317 318 2.560542 CTGGATAGAGGTCGGATTCTGG 59.439 54.545 5.54 0.00 0.00 3.86
342 343 4.494091 TTGGGCTCAAAGATTCTAGGAG 57.506 45.455 0.00 9.17 0.00 3.69
344 345 5.420104 ACAAATTGGGCTCAAAGATTCTAGG 59.580 40.000 1.42 0.00 36.36 3.02
346 347 6.916360 AACAAATTGGGCTCAAAGATTCTA 57.084 33.333 1.42 0.00 36.36 2.10
347 348 5.813513 AACAAATTGGGCTCAAAGATTCT 57.186 34.783 1.42 0.00 36.36 2.40
420 428 3.814504 TTTCCAGAATCTTTGAGCCCT 57.185 42.857 0.00 0.00 0.00 5.19
421 429 3.367806 GCTTTTCCAGAATCTTTGAGCCC 60.368 47.826 0.00 0.00 0.00 5.19
426 434 5.656213 ATCCAGCTTTTCCAGAATCTTTG 57.344 39.130 0.00 0.00 0.00 2.77
430 438 4.140536 CCCTATCCAGCTTTTCCAGAATC 58.859 47.826 0.00 0.00 0.00 2.52
434 442 3.749226 GATCCCTATCCAGCTTTTCCAG 58.251 50.000 0.00 0.00 0.00 3.86
465 474 3.085952 TGCCAAAATCTCGGGATTCTT 57.914 42.857 11.77 5.38 40.86 2.52
483 492 2.287849 GGTCTTGGCTCAGTTCTTTTGC 60.288 50.000 0.00 0.00 0.00 3.68
499 508 1.371558 GGCTCGTGGACAAGGTCTT 59.628 57.895 0.00 0.00 32.47 3.01
520 529 1.587547 CTTGAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
521 530 1.587547 GCTTGAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
522 531 0.180406 GGCTTGAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 38.07 5.14
523 532 2.707902 GGCTTGAAATCTAGGCCCG 58.292 57.895 0.00 0.00 38.07 6.13
526 535 1.300481 GTCGGGCTTGAAATCTAGGC 58.700 55.000 9.36 9.36 41.89 3.93
527 536 2.555199 CTGTCGGGCTTGAAATCTAGG 58.445 52.381 0.00 0.00 0.00 3.02
528 537 1.936547 GCTGTCGGGCTTGAAATCTAG 59.063 52.381 0.00 0.00 0.00 2.43
529 538 1.406887 GGCTGTCGGGCTTGAAATCTA 60.407 52.381 0.00 0.00 37.53 1.98
530 539 0.678048 GGCTGTCGGGCTTGAAATCT 60.678 55.000 0.00 0.00 37.53 2.40
531 540 1.803289 GGCTGTCGGGCTTGAAATC 59.197 57.895 0.00 0.00 37.53 2.17
532 541 2.040544 CGGCTGTCGGGCTTGAAAT 61.041 57.895 3.42 0.00 38.46 2.17
533 542 2.668212 CGGCTGTCGGGCTTGAAA 60.668 61.111 3.42 0.00 38.46 2.69
560 569 2.584143 GTGAATACGACGGGCCCG 60.584 66.667 42.17 42.17 46.03 6.13
566 580 2.901873 TCGTTAACGTGTGAATACGACG 59.098 45.455 25.98 6.33 46.46 5.12
576 590 0.320160 GGGCCTCTTCGTTAACGTGT 60.320 55.000 25.98 0.00 40.80 4.49
578 592 1.080298 CGGGCCTCTTCGTTAACGT 60.080 57.895 25.98 0.00 40.80 3.99
579 593 1.808390 CCGGGCCTCTTCGTTAACG 60.808 63.158 21.85 21.85 41.45 3.18
600 614 2.680352 GTCGGGCCTCAGACCTCA 60.680 66.667 0.84 0.00 0.00 3.86
601 615 3.827898 CGTCGGGCCTCAGACCTC 61.828 72.222 16.72 0.00 34.10 3.85
616 630 1.024579 CCATCACGCTAAAAGCCCGT 61.025 55.000 0.00 0.00 38.18 5.28
662 676 4.320910 GGCCTACCAAAGCCTGAC 57.679 61.111 0.00 0.00 46.14 3.51
709 723 0.036875 ACACCACAAGAGGCTTAGGC 59.963 55.000 0.00 0.00 37.82 3.93
720 734 0.462937 CGAACACCCTCACACCACAA 60.463 55.000 0.00 0.00 0.00 3.33
797 829 1.063806 CTCGACACTTCAGCCGAAAG 58.936 55.000 0.00 0.00 0.00 2.62
798 830 0.387929 ACTCGACACTTCAGCCGAAA 59.612 50.000 0.00 0.00 0.00 3.46
799 831 1.241165 TACTCGACACTTCAGCCGAA 58.759 50.000 0.00 0.00 0.00 4.30
800 832 1.241165 TTACTCGACACTTCAGCCGA 58.759 50.000 0.00 0.00 0.00 5.54
801 833 1.719780 GTTTACTCGACACTTCAGCCG 59.280 52.381 0.00 0.00 0.00 5.52
802 834 2.731976 CAGTTTACTCGACACTTCAGCC 59.268 50.000 0.00 0.00 0.00 4.85
803 835 2.155924 GCAGTTTACTCGACACTTCAGC 59.844 50.000 0.00 0.00 0.00 4.26
804 836 2.731976 GGCAGTTTACTCGACACTTCAG 59.268 50.000 0.00 0.00 0.00 3.02
805 837 2.364324 AGGCAGTTTACTCGACACTTCA 59.636 45.455 0.00 0.00 0.00 3.02
806 838 2.987821 GAGGCAGTTTACTCGACACTTC 59.012 50.000 0.00 0.00 0.00 3.01
825 857 6.549061 TCGATTCTTTTGCATGAATCTTGAG 58.451 36.000 23.07 14.17 43.59 3.02
875 907 1.134280 CGGCTGACATTCTCAGGGAAT 60.134 52.381 0.00 0.00 46.08 3.01
1525 1608 2.576615 GGTTCTTGTTGGCTGAACTCT 58.423 47.619 0.00 0.00 39.73 3.24
1568 1651 5.435291 CTTCTGGTAGATTTTGCAGAGGAT 58.565 41.667 0.00 0.00 0.00 3.24
1639 1722 2.036475 CCTCTTGGATTCCGACATCGAT 59.964 50.000 2.09 0.00 37.19 3.59
1650 1733 1.077429 GCCGCCTTCCTCTTGGATT 60.077 57.895 0.00 0.00 42.81 3.01
1841 1933 3.682885 TACCGGCGGTTCTTGCGA 61.683 61.111 38.73 14.98 37.09 5.10
1923 2015 4.681978 AGGTGGTGCGGTCGAAGC 62.682 66.667 7.14 7.14 0.00 3.86
2012 2116 2.939103 GTGAGACGAAGCCATAATTGCT 59.061 45.455 0.00 0.00 41.89 3.91
2159 2263 0.962356 GACTCTGGTGTGGCCCAATG 60.962 60.000 0.00 0.00 33.07 2.82
2242 2833 1.071471 CTGTGTGGTGGTCCTGGAC 59.929 63.158 18.65 18.65 34.23 4.02
2249 2840 2.347490 GATCGGCTGTGTGGTGGT 59.653 61.111 0.00 0.00 0.00 4.16
2340 2936 2.420022 ACGTGGAAGCATATCAAAGCAC 59.580 45.455 0.00 0.00 0.00 4.40
2368 2964 6.100004 CACATTATACGTCAACACTCCTCTT 58.900 40.000 0.00 0.00 0.00 2.85
2374 2970 3.370978 GCAGCACATTATACGTCAACACT 59.629 43.478 0.00 0.00 0.00 3.55
2375 2971 3.485216 GGCAGCACATTATACGTCAACAC 60.485 47.826 0.00 0.00 0.00 3.32
2376 2972 2.675844 GGCAGCACATTATACGTCAACA 59.324 45.455 0.00 0.00 0.00 3.33
2377 2973 2.936498 AGGCAGCACATTATACGTCAAC 59.064 45.455 0.00 0.00 0.00 3.18
2378 2974 3.260475 AGGCAGCACATTATACGTCAA 57.740 42.857 0.00 0.00 0.00 3.18
2379 2975 2.979814 AGGCAGCACATTATACGTCA 57.020 45.000 0.00 0.00 0.00 4.35
2380 2976 3.978687 ACTAGGCAGCACATTATACGTC 58.021 45.455 0.00 0.00 0.00 4.34
2381 2977 3.637229 AGACTAGGCAGCACATTATACGT 59.363 43.478 0.00 0.00 0.00 3.57
2382 2978 4.022762 AGAGACTAGGCAGCACATTATACG 60.023 45.833 0.00 0.00 0.00 3.06
2383 2979 5.461032 AGAGACTAGGCAGCACATTATAC 57.539 43.478 0.00 0.00 0.00 1.47
2384 2980 6.098266 TGAAAGAGACTAGGCAGCACATTATA 59.902 38.462 0.00 0.00 0.00 0.98
2385 2981 5.104776 TGAAAGAGACTAGGCAGCACATTAT 60.105 40.000 0.00 0.00 0.00 1.28
2386 2982 4.222810 TGAAAGAGACTAGGCAGCACATTA 59.777 41.667 0.00 0.00 0.00 1.90
2387 2983 3.008375 TGAAAGAGACTAGGCAGCACATT 59.992 43.478 0.00 0.00 0.00 2.71
2388 2984 2.568956 TGAAAGAGACTAGGCAGCACAT 59.431 45.455 0.00 0.00 0.00 3.21
2389 2985 1.970640 TGAAAGAGACTAGGCAGCACA 59.029 47.619 0.00 0.00 0.00 4.57
2390 2986 2.751166 TGAAAGAGACTAGGCAGCAC 57.249 50.000 0.00 0.00 0.00 4.40
2391 2987 2.833943 TGATGAAAGAGACTAGGCAGCA 59.166 45.455 0.00 0.00 0.00 4.41
2392 2988 3.131933 TCTGATGAAAGAGACTAGGCAGC 59.868 47.826 0.00 0.00 0.00 5.25
2393 2989 4.998671 TCTGATGAAAGAGACTAGGCAG 57.001 45.455 0.00 0.00 0.00 4.85
2394 2990 4.037327 CGATCTGATGAAAGAGACTAGGCA 59.963 45.833 0.00 0.00 0.00 4.75
2395 2991 4.545610 CGATCTGATGAAAGAGACTAGGC 58.454 47.826 0.00 0.00 0.00 3.93
2396 2992 4.582656 ACCGATCTGATGAAAGAGACTAGG 59.417 45.833 0.00 0.00 0.00 3.02
2397 2993 5.766150 ACCGATCTGATGAAAGAGACTAG 57.234 43.478 0.00 0.00 0.00 2.57
2398 2994 6.071334 ACAAACCGATCTGATGAAAGAGACTA 60.071 38.462 0.00 0.00 0.00 2.59
2399 2995 5.174395 CAAACCGATCTGATGAAAGAGACT 58.826 41.667 0.00 0.00 0.00 3.24
2400 2996 4.932200 ACAAACCGATCTGATGAAAGAGAC 59.068 41.667 0.00 0.00 0.00 3.36
2401 2997 5.152623 ACAAACCGATCTGATGAAAGAGA 57.847 39.130 0.00 0.00 0.00 3.10
2402 2998 5.391310 CCAACAAACCGATCTGATGAAAGAG 60.391 44.000 0.00 0.00 0.00 2.85
2403 2999 4.455533 CCAACAAACCGATCTGATGAAAGA 59.544 41.667 0.00 0.00 0.00 2.52
2404 3000 4.216257 ACCAACAAACCGATCTGATGAAAG 59.784 41.667 0.00 0.00 0.00 2.62
2405 3001 4.141287 ACCAACAAACCGATCTGATGAAA 58.859 39.130 0.00 0.00 0.00 2.69
2406 3002 3.750371 ACCAACAAACCGATCTGATGAA 58.250 40.909 0.00 0.00 0.00 2.57
2407 3003 3.417069 ACCAACAAACCGATCTGATGA 57.583 42.857 0.00 0.00 0.00 2.92
2408 3004 3.825308 CAACCAACAAACCGATCTGATG 58.175 45.455 0.00 0.00 0.00 3.07
2409 3005 2.228822 GCAACCAACAAACCGATCTGAT 59.771 45.455 0.00 0.00 0.00 2.90
2410 3006 1.606668 GCAACCAACAAACCGATCTGA 59.393 47.619 0.00 0.00 0.00 3.27
2411 3007 1.336440 TGCAACCAACAAACCGATCTG 59.664 47.619 0.00 0.00 0.00 2.90
2412 3008 1.686355 TGCAACCAACAAACCGATCT 58.314 45.000 0.00 0.00 0.00 2.75
2413 3009 2.723124 ATGCAACCAACAAACCGATC 57.277 45.000 0.00 0.00 0.00 3.69
2414 3010 2.547642 CCAATGCAACCAACAAACCGAT 60.548 45.455 0.00 0.00 0.00 4.18
2415 3011 1.202463 CCAATGCAACCAACAAACCGA 60.202 47.619 0.00 0.00 0.00 4.69
2416 3012 1.216122 CCAATGCAACCAACAAACCG 58.784 50.000 0.00 0.00 0.00 4.44
2417 3013 0.943673 GCCAATGCAACCAACAAACC 59.056 50.000 0.00 0.00 37.47 3.27
2418 3014 1.952193 AGCCAATGCAACCAACAAAC 58.048 45.000 0.00 0.00 41.13 2.93
2419 3015 2.961741 TCTAGCCAATGCAACCAACAAA 59.038 40.909 0.00 0.00 41.13 2.83
2420 3016 2.557924 CTCTAGCCAATGCAACCAACAA 59.442 45.455 0.00 0.00 41.13 2.83
2421 3017 2.161855 CTCTAGCCAATGCAACCAACA 58.838 47.619 0.00 0.00 41.13 3.33
2422 3018 1.135286 GCTCTAGCCAATGCAACCAAC 60.135 52.381 0.00 0.00 41.13 3.77
2423 3019 1.176527 GCTCTAGCCAATGCAACCAA 58.823 50.000 0.00 0.00 41.13 3.67
2424 3020 0.038021 TGCTCTAGCCAATGCAACCA 59.962 50.000 0.00 0.00 41.13 3.67
2425 3021 1.066605 CATGCTCTAGCCAATGCAACC 59.933 52.381 0.00 0.00 41.13 3.77
2426 3022 1.535437 GCATGCTCTAGCCAATGCAAC 60.535 52.381 11.37 2.38 44.74 4.17
2427 3023 0.742505 GCATGCTCTAGCCAATGCAA 59.257 50.000 11.37 0.00 44.74 4.08
2428 3024 2.411535 GCATGCTCTAGCCAATGCA 58.588 52.632 11.37 0.00 44.74 3.96
2429 3025 0.030369 GTGCATGCTCTAGCCAATGC 59.970 55.000 20.33 16.33 45.25 3.56
2430 3026 1.676746 AGTGCATGCTCTAGCCAATG 58.323 50.000 20.22 0.00 41.18 2.82
2431 3027 2.431954 AAGTGCATGCTCTAGCCAAT 57.568 45.000 21.70 3.24 41.18 3.16
2432 3028 2.205022 AAAGTGCATGCTCTAGCCAA 57.795 45.000 21.70 0.00 41.18 4.52
2433 3029 2.205022 AAAAGTGCATGCTCTAGCCA 57.795 45.000 21.70 0.00 41.18 4.75
2434 3030 3.009723 TGTAAAAGTGCATGCTCTAGCC 58.990 45.455 21.70 11.06 41.18 3.93
2435 3031 4.497006 CCATGTAAAAGTGCATGCTCTAGC 60.497 45.833 21.70 12.53 44.11 3.42
2436 3032 4.637534 ACCATGTAAAAGTGCATGCTCTAG 59.362 41.667 21.70 6.98 44.11 2.43
2437 3033 4.588899 ACCATGTAAAAGTGCATGCTCTA 58.411 39.130 21.70 7.14 44.11 2.43
2438 3034 3.424703 ACCATGTAAAAGTGCATGCTCT 58.575 40.909 20.33 18.23 44.11 4.09
2439 3035 3.855689 ACCATGTAAAAGTGCATGCTC 57.144 42.857 20.33 15.94 44.11 4.26
2440 3036 4.035558 CGATACCATGTAAAAGTGCATGCT 59.964 41.667 20.33 0.00 44.11 3.79
2441 3037 4.035091 TCGATACCATGTAAAAGTGCATGC 59.965 41.667 11.82 11.82 44.11 4.06
2442 3038 5.733226 TCGATACCATGTAAAAGTGCATG 57.267 39.130 0.00 0.00 44.81 4.06
2443 3039 5.220854 GCTTCGATACCATGTAAAAGTGCAT 60.221 40.000 0.00 0.00 0.00 3.96
2444 3040 4.094294 GCTTCGATACCATGTAAAAGTGCA 59.906 41.667 0.00 0.00 0.00 4.57
2445 3041 4.332819 AGCTTCGATACCATGTAAAAGTGC 59.667 41.667 0.00 0.00 0.00 4.40
2446 3042 7.491372 TCTTAGCTTCGATACCATGTAAAAGTG 59.509 37.037 0.00 0.00 0.00 3.16
2447 3043 7.553334 TCTTAGCTTCGATACCATGTAAAAGT 58.447 34.615 0.00 0.00 0.00 2.66
2448 3044 7.169982 CCTCTTAGCTTCGATACCATGTAAAAG 59.830 40.741 0.00 0.00 0.00 2.27
2449 3045 6.984474 CCTCTTAGCTTCGATACCATGTAAAA 59.016 38.462 0.00 0.00 0.00 1.52
2450 3046 6.097839 ACCTCTTAGCTTCGATACCATGTAAA 59.902 38.462 0.00 0.00 0.00 2.01
2451 3047 5.597182 ACCTCTTAGCTTCGATACCATGTAA 59.403 40.000 0.00 0.00 0.00 2.41
2452 3048 5.138276 ACCTCTTAGCTTCGATACCATGTA 58.862 41.667 0.00 0.00 0.00 2.29
2453 3049 3.961408 ACCTCTTAGCTTCGATACCATGT 59.039 43.478 0.00 0.00 0.00 3.21
2454 3050 4.279671 AGACCTCTTAGCTTCGATACCATG 59.720 45.833 0.00 0.00 0.00 3.66
2455 3051 4.475345 AGACCTCTTAGCTTCGATACCAT 58.525 43.478 0.00 0.00 0.00 3.55
2456 3052 3.899726 AGACCTCTTAGCTTCGATACCA 58.100 45.455 0.00 0.00 0.00 3.25
2457 3053 4.098196 ACAAGACCTCTTAGCTTCGATACC 59.902 45.833 0.00 0.00 34.28 2.73
2458 3054 5.251601 ACAAGACCTCTTAGCTTCGATAC 57.748 43.478 0.00 0.00 34.28 2.24
2459 3055 5.916661 AACAAGACCTCTTAGCTTCGATA 57.083 39.130 0.00 0.00 34.28 2.92
2460 3056 4.810191 AACAAGACCTCTTAGCTTCGAT 57.190 40.909 0.00 0.00 34.28 3.59
2461 3057 4.602340 AAACAAGACCTCTTAGCTTCGA 57.398 40.909 0.00 0.00 34.28 3.71
2462 3058 4.865365 CCTAAACAAGACCTCTTAGCTTCG 59.135 45.833 0.00 0.00 34.28 3.79
2463 3059 4.632251 GCCTAAACAAGACCTCTTAGCTTC 59.368 45.833 0.00 0.00 34.28 3.86
2464 3060 4.565861 GGCCTAAACAAGACCTCTTAGCTT 60.566 45.833 0.00 0.00 34.28 3.74
2465 3061 3.055021 GGCCTAAACAAGACCTCTTAGCT 60.055 47.826 0.00 0.00 34.28 3.32
2466 3062 3.055021 AGGCCTAAACAAGACCTCTTAGC 60.055 47.826 1.29 0.00 34.28 3.09
2467 3063 4.223032 TCAGGCCTAAACAAGACCTCTTAG 59.777 45.833 3.98 0.00 34.28 2.18
2468 3064 4.164981 TCAGGCCTAAACAAGACCTCTTA 58.835 43.478 3.98 0.00 34.28 2.10
2469 3065 2.979678 TCAGGCCTAAACAAGACCTCTT 59.020 45.455 3.98 0.00 36.45 2.85
2470 3066 2.621070 TCAGGCCTAAACAAGACCTCT 58.379 47.619 3.98 0.00 0.00 3.69
2471 3067 3.339141 CTTCAGGCCTAAACAAGACCTC 58.661 50.000 3.98 0.00 0.00 3.85
2472 3068 2.040412 CCTTCAGGCCTAAACAAGACCT 59.960 50.000 3.98 0.00 0.00 3.85
2473 3069 2.039879 TCCTTCAGGCCTAAACAAGACC 59.960 50.000 3.98 0.00 34.44 3.85
2474 3070 3.339141 CTCCTTCAGGCCTAAACAAGAC 58.661 50.000 3.98 0.00 34.44 3.01
2475 3071 2.290323 GCTCCTTCAGGCCTAAACAAGA 60.290 50.000 3.98 0.00 34.44 3.02
2476 3072 2.087646 GCTCCTTCAGGCCTAAACAAG 58.912 52.381 3.98 5.42 34.44 3.16
2477 3073 1.271926 GGCTCCTTCAGGCCTAAACAA 60.272 52.381 3.98 0.00 44.48 2.83
2478 3074 0.328258 GGCTCCTTCAGGCCTAAACA 59.672 55.000 3.98 0.00 44.48 2.83
2479 3075 3.176728 GGCTCCTTCAGGCCTAAAC 57.823 57.895 3.98 0.00 44.48 2.01
2486 3082 1.669115 CACGTGTGGCTCCTTCAGG 60.669 63.158 7.58 0.00 0.00 3.86
2487 3083 0.668706 CTCACGTGTGGCTCCTTCAG 60.669 60.000 16.51 0.00 0.00 3.02
2488 3084 1.367471 CTCACGTGTGGCTCCTTCA 59.633 57.895 16.51 0.00 0.00 3.02
2489 3085 1.374758 CCTCACGTGTGGCTCCTTC 60.375 63.158 22.53 0.00 0.00 3.46
2490 3086 2.743718 CCTCACGTGTGGCTCCTT 59.256 61.111 22.53 0.00 0.00 3.36
2491 3087 3.314331 CCCTCACGTGTGGCTCCT 61.314 66.667 27.37 0.00 0.00 3.69
2492 3088 4.394712 CCCCTCACGTGTGGCTCC 62.395 72.222 27.37 0.00 0.00 4.70
2493 3089 4.394712 CCCCCTCACGTGTGGCTC 62.395 72.222 27.37 0.00 0.00 4.70
2494 3090 4.954118 TCCCCCTCACGTGTGGCT 62.954 66.667 27.37 0.00 0.00 4.75
2495 3091 4.394712 CTCCCCCTCACGTGTGGC 62.395 72.222 27.37 0.00 0.00 5.01
2496 3092 2.923035 ACTCCCCCTCACGTGTGG 60.923 66.667 26.15 26.15 0.00 4.17
2497 3093 2.040009 AACACTCCCCCTCACGTGTG 62.040 60.000 16.51 13.39 40.19 3.82
2498 3094 1.764854 AACACTCCCCCTCACGTGT 60.765 57.895 16.51 0.00 41.92 4.49
2499 3095 1.301716 CAACACTCCCCCTCACGTG 60.302 63.158 9.94 9.94 0.00 4.49
2500 3096 1.458777 TCAACACTCCCCCTCACGT 60.459 57.895 0.00 0.00 0.00 4.49
2501 3097 1.004918 GTCAACACTCCCCCTCACG 60.005 63.158 0.00 0.00 0.00 4.35
2502 3098 1.004918 CGTCAACACTCCCCCTCAC 60.005 63.158 0.00 0.00 0.00 3.51
2503 3099 0.178955 TACGTCAACACTCCCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
2504 3100 0.531200 CTACGTCAACACTCCCCCTC 59.469 60.000 0.00 0.00 0.00 4.30
2505 3101 0.903454 CCTACGTCAACACTCCCCCT 60.903 60.000 0.00 0.00 0.00 4.79
2506 3102 1.595357 CCTACGTCAACACTCCCCC 59.405 63.158 0.00 0.00 0.00 5.40
2507 3103 1.595357 CCCTACGTCAACACTCCCC 59.405 63.158 0.00 0.00 0.00 4.81
2508 3104 1.079336 GCCCTACGTCAACACTCCC 60.079 63.158 0.00 0.00 0.00 4.30
2509 3105 1.134560 CTAGCCCTACGTCAACACTCC 59.865 57.143 0.00 0.00 0.00 3.85
2510 3106 2.089980 TCTAGCCCTACGTCAACACTC 58.910 52.381 0.00 0.00 0.00 3.51
2511 3107 2.093106 CTCTAGCCCTACGTCAACACT 58.907 52.381 0.00 0.00 0.00 3.55
2512 3108 1.469423 GCTCTAGCCCTACGTCAACAC 60.469 57.143 0.00 0.00 34.31 3.32
2513 3109 0.815734 GCTCTAGCCCTACGTCAACA 59.184 55.000 0.00 0.00 34.31 3.33
2514 3110 0.815734 TGCTCTAGCCCTACGTCAAC 59.184 55.000 0.00 0.00 41.18 3.18
2515 3111 1.409064 CATGCTCTAGCCCTACGTCAA 59.591 52.381 0.00 0.00 41.18 3.18
2516 3112 1.032794 CATGCTCTAGCCCTACGTCA 58.967 55.000 0.00 0.00 41.18 4.35
2517 3113 0.319125 GCATGCTCTAGCCCTACGTC 60.319 60.000 11.37 0.00 41.18 4.34
2518 3114 1.043116 TGCATGCTCTAGCCCTACGT 61.043 55.000 20.33 0.00 41.18 3.57
2519 3115 0.598680 GTGCATGCTCTAGCCCTACG 60.599 60.000 20.33 0.00 41.18 3.51
2520 3116 0.755686 AGTGCATGCTCTAGCCCTAC 59.244 55.000 20.22 5.71 41.18 3.18
2521 3117 1.414181 GAAGTGCATGCTCTAGCCCTA 59.586 52.381 21.70 0.00 41.18 3.53
2522 3118 0.179936 GAAGTGCATGCTCTAGCCCT 59.820 55.000 21.70 6.65 41.18 5.19
2523 3119 0.179936 AGAAGTGCATGCTCTAGCCC 59.820 55.000 21.70 11.65 41.18 5.19
2524 3120 2.159043 TGTAGAAGTGCATGCTCTAGCC 60.159 50.000 21.70 13.81 41.18 3.93
2525 3121 3.122297 CTGTAGAAGTGCATGCTCTAGC 58.878 50.000 21.70 16.29 42.50 3.42
2526 3122 4.383850 ACTGTAGAAGTGCATGCTCTAG 57.616 45.455 21.70 16.60 37.88 2.43
2537 3133 1.344763 GCAGACCCACACTGTAGAAGT 59.655 52.381 0.00 0.00 40.93 3.01
2538 3134 1.338200 GGCAGACCCACACTGTAGAAG 60.338 57.143 0.00 0.00 37.64 2.85
2539 3135 0.685097 GGCAGACCCACACTGTAGAA 59.315 55.000 0.00 0.00 37.64 2.10
2540 3136 0.178932 AGGCAGACCCACACTGTAGA 60.179 55.000 0.00 0.00 37.64 2.59
2541 3137 0.247736 GAGGCAGACCCACACTGTAG 59.752 60.000 0.00 0.00 37.64 2.74
2542 3138 1.192146 GGAGGCAGACCCACACTGTA 61.192 60.000 0.00 0.00 37.64 2.74
2543 3139 2.520536 GGAGGCAGACCCACACTGT 61.521 63.158 0.00 0.00 37.64 3.55
2544 3140 1.772819 AAGGAGGCAGACCCACACTG 61.773 60.000 0.00 0.00 36.11 3.66
2665 3288 4.760757 GGAGGACCGCTAAGATGC 57.239 61.111 0.00 0.00 0.00 3.91
3066 5837 5.607119 TTTTCAGATACGCAGAAGGAAAC 57.393 39.130 0.00 0.00 0.00 2.78
3173 5969 5.898174 TCCGAAAAATCTTGTCGCTAGATA 58.102 37.500 0.00 0.00 32.21 1.98
3174 5970 4.755411 TCCGAAAAATCTTGTCGCTAGAT 58.245 39.130 0.00 0.00 33.87 1.98
3175 5971 4.182693 TCCGAAAAATCTTGTCGCTAGA 57.817 40.909 0.00 0.00 33.46 2.43
3180 5991 3.063997 CCTCCATCCGAAAAATCTTGTCG 59.936 47.826 0.00 0.00 34.58 4.35
3187 5998 6.704056 ATATACTCCCTCCATCCGAAAAAT 57.296 37.500 0.00 0.00 0.00 1.82
3197 6008 8.060075 GGCTCTACTAATTATATACTCCCTCCA 58.940 40.741 0.00 0.00 0.00 3.86
3663 7397 0.320374 AAGAGAATGAACCGACGCCA 59.680 50.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.