Multiple sequence alignment - TraesCS3D01G165100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G165100 chr3D 100.000 4887 0 0 1 4887 136720848 136725734 0.000000e+00 9025
1 TraesCS3D01G165100 chr3D 100.000 1590 0 0 5028 6617 136725875 136727464 0.000000e+00 2937
2 TraesCS3D01G165100 chr3D 99.602 251 1 0 5028 5278 136725482 136725732 6.480000e-125 459
3 TraesCS3D01G165100 chr3D 99.602 251 1 0 4635 4885 136725875 136726125 6.480000e-125 459
4 TraesCS3D01G165100 chr3D 93.537 294 16 3 5147 5438 136725442 136725734 1.090000e-117 435
5 TraesCS3D01G165100 chr3D 93.537 294 16 3 4595 4887 136725994 136726285 1.090000e-117 435
6 TraesCS3D01G165100 chr3D 94.014 284 15 2 5186 5468 136725875 136726157 5.080000e-116 429
7 TraesCS3D01G165100 chr3D 94.014 284 15 2 5028 5310 136726033 136726315 5.080000e-116 429
8 TraesCS3D01G165100 chr3D 93.293 164 10 1 5306 5468 136725442 136725605 2.560000e-59 241
9 TraesCS3D01G165100 chr3D 100.000 121 0 0 6970 7090 136727817 136727937 2.570000e-54 224
10 TraesCS3D01G165100 chr3D 92.593 135 8 2 4754 4887 136725442 136725575 7.260000e-45 193
11 TraesCS3D01G165100 chr3D 93.478 92 5 1 3375 3466 324311074 324311164 1.240000e-27 135
12 TraesCS3D01G165100 chr3D 91.579 95 7 1 5028 5121 136725640 136725734 5.770000e-26 130
13 TraesCS3D01G165100 chr3D 91.579 95 7 1 4793 4887 136725875 136725968 5.770000e-26 130
14 TraesCS3D01G165100 chr3B 97.509 1686 40 2 3133 4818 199529051 199530734 0.000000e+00 2880
15 TraesCS3D01G165100 chr3B 94.579 1070 49 6 5242 6306 199531011 199532076 0.000000e+00 1646
16 TraesCS3D01G165100 chr3B 89.513 1211 73 18 952 2124 199526768 199527962 0.000000e+00 1483
17 TraesCS3D01G165100 chr3B 96.455 677 19 3 2478 3150 199527974 199528649 0.000000e+00 1112
18 TraesCS3D01G165100 chr3B 90.199 653 41 9 308 959 199526104 199526734 0.000000e+00 830
19 TraesCS3D01G165100 chr3B 92.163 319 23 2 1 318 199514278 199514595 3.900000e-122 449
20 TraesCS3D01G165100 chr3B 94.222 225 11 2 5147 5370 199530511 199530734 6.810000e-90 342
21 TraesCS3D01G165100 chr3B 93.506 231 12 2 5083 5310 199531011 199531241 2.450000e-89 340
22 TraesCS3D01G165100 chr3B 96.875 192 5 1 3133 3324 199528664 199528854 3.190000e-83 320
23 TraesCS3D01G165100 chr3B 86.689 293 28 5 2829 3116 199529016 199529302 1.480000e-81 315
24 TraesCS3D01G165100 chr3B 97.283 184 5 0 5028 5211 199530551 199530734 5.340000e-81 313
25 TraesCS3D01G165100 chr3B 85.075 335 18 9 6288 6612 199532091 199532403 5.340000e-81 313
26 TraesCS3D01G165100 chr3B 93.069 202 9 2 4690 4887 199531011 199531211 2.500000e-74 291
27 TraesCS3D01G165100 chr3B 87.013 231 19 5 2829 3055 199528631 199528854 4.250000e-62 250
28 TraesCS3D01G165100 chr3B 92.683 164 11 1 5306 5468 199530511 199530674 1.190000e-57 235
29 TraesCS3D01G165100 chr3B 92.593 135 8 2 4754 4887 199530511 199530644 7.260000e-45 193
30 TraesCS3D01G165100 chr3B 89.844 128 9 1 5028 5151 199531114 199531241 2.050000e-35 161
31 TraesCS3D01G165100 chr3B 89.691 97 10 0 3054 3150 199528938 199529034 2.690000e-24 124
32 TraesCS3D01G165100 chr3B 98.413 63 1 0 3323 3385 199528938 199529000 2.090000e-20 111
33 TraesCS3D01G165100 chr3A 95.168 1759 51 9 3133 4887 154660967 154662695 0.000000e+00 2747
34 TraesCS3D01G165100 chr3A 94.306 1124 56 5 5042 6164 154662616 154663732 0.000000e+00 1714
35 TraesCS3D01G165100 chr3A 88.353 1245 83 28 1068 2284 154658761 154659971 0.000000e+00 1439
36 TraesCS3D01G165100 chr3A 95.771 875 33 2 2279 3150 154660079 154660952 0.000000e+00 1408
37 TraesCS3D01G165100 chr3A 90.729 960 58 14 1 954 154657641 154658575 0.000000e+00 1251
38 TraesCS3D01G165100 chr3A 92.793 444 21 5 5028 5468 154662448 154662883 3.610000e-177 632
39 TraesCS3D01G165100 chr3A 94.539 293 15 1 4595 4887 154662721 154663012 1.080000e-122 451
40 TraesCS3D01G165100 chr3A 95.406 283 13 0 5028 5310 154662760 154663042 1.080000e-122 451
41 TraesCS3D01G165100 chr3A 89.544 373 16 10 6252 6612 154663762 154664123 1.080000e-122 451
42 TraesCS3D01G165100 chr3A 91.411 326 16 4 5147 5468 154662408 154662725 3.040000e-118 436
43 TraesCS3D01G165100 chr3A 92.150 293 14 3 4595 4887 154662570 154662853 8.560000e-109 405
44 TraesCS3D01G165100 chr3A 86.007 293 27 9 2829 3116 154660934 154661217 1.160000e-77 302
45 TraesCS3D01G165100 chr3A 91.304 138 7 3 4754 4887 154662408 154662544 4.370000e-42 183
46 TraesCS3D01G165100 chr3A 91.935 124 10 0 952 1075 154658614 154658737 2.630000e-39 174
47 TraesCS3D01G165100 chr3A 94.186 86 5 0 3381 3466 58929339 58929424 1.600000e-26 132
48 TraesCS3D01G165100 chr3A 89.362 94 8 2 6998 7089 608182676 608182583 4.490000e-22 117
49 TraesCS3D01G165100 chr2D 89.502 1286 119 11 3470 4755 89261465 89260196 0.000000e+00 1613
50 TraesCS3D01G165100 chr2D 81.429 910 97 35 952 1841 89263606 89262749 0.000000e+00 678
51 TraesCS3D01G165100 chr2D 86.275 255 24 10 3133 3378 89261729 89261477 4.220000e-67 267
52 TraesCS3D01G165100 chr2A 89.404 1293 120 14 3470 4760 88985760 88984483 0.000000e+00 1613
53 TraesCS3D01G165100 chr2A 82.442 1327 161 42 5309 6601 88984643 88983355 0.000000e+00 1094
54 TraesCS3D01G165100 chr2A 86.595 843 101 10 2275 3109 88986610 88985772 0.000000e+00 920
55 TraesCS3D01G165100 chr2A 85.901 688 69 13 952 1624 88987945 88987271 0.000000e+00 708
56 TraesCS3D01G165100 chr2A 85.490 255 26 9 3133 3378 88986024 88985772 9.130000e-64 255
57 TraesCS3D01G165100 chr2B 83.567 1071 131 22 5309 6355 141837592 141836543 0.000000e+00 961
58 TraesCS3D01G165100 chr2B 86.588 850 91 17 2275 3109 141840203 141839362 0.000000e+00 917
59 TraesCS3D01G165100 chr2B 89.255 698 60 10 4059 4755 141838120 141837437 0.000000e+00 859
60 TraesCS3D01G165100 chr2B 81.974 932 94 32 952 1870 141841573 141840703 0.000000e+00 723
61 TraesCS3D01G165100 chr2B 88.345 592 59 6 3470 4061 141839350 141838769 0.000000e+00 702
62 TraesCS3D01G165100 chr2B 89.103 312 27 5 1978 2284 141840630 141840321 1.440000e-101 381
63 TraesCS3D01G165100 chr2B 86.957 230 21 8 3157 3378 141839590 141839362 4.250000e-62 250
64 TraesCS3D01G165100 chr1D 94.186 86 5 0 3381 3466 59875946 59876031 1.600000e-26 132
65 TraesCS3D01G165100 chr5A 90.722 97 8 1 3372 3467 441703538 441703634 2.080000e-25 128
66 TraesCS3D01G165100 chr4A 91.304 92 7 1 6998 7089 558682456 558682546 2.690000e-24 124
67 TraesCS3D01G165100 chr4A 92.941 85 6 0 3382 3466 739709956 739709872 2.690000e-24 124
68 TraesCS3D01G165100 chr4A 86.667 105 11 1 3362 3466 704528101 704528202 5.810000e-21 113
69 TraesCS3D01G165100 chr4D 89.583 96 10 0 3371 3466 34978330 34978425 9.660000e-24 122
70 TraesCS3D01G165100 chr5D 86.111 108 11 3 3375 3480 512549100 512549205 5.810000e-21 113
71 TraesCS3D01G165100 chr7A 85.577 104 8 5 6992 7089 671750188 671750086 1.260000e-17 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G165100 chr3D 136720848 136727937 7089 False 1194.307692 9025 95.642308 1 7090 13 chr3D.!!$F2 7089
1 TraesCS3D01G165100 chr3B 199526104 199532403 6299 False 625.500000 2880 92.511722 308 6612 18 chr3B.!!$F2 6304
2 TraesCS3D01G165100 chr3A 154657641 154664123 6482 False 860.285714 2747 92.101143 1 6612 14 chr3A.!!$F2 6611
3 TraesCS3D01G165100 chr2D 89260196 89263606 3410 True 852.666667 1613 85.735333 952 4755 3 chr2D.!!$R1 3803
4 TraesCS3D01G165100 chr2A 88983355 88987945 4590 True 918.000000 1613 85.966400 952 6601 5 chr2A.!!$R1 5649
5 TraesCS3D01G165100 chr2B 141836543 141841573 5030 True 684.714286 961 86.541286 952 6355 7 chr2B.!!$R1 5403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 251 0.392706 ACCACTGTTGCGAGATGACA 59.607 50.000 0.00 0.00 0.00 3.58 F
1117 1211 0.375106 GCTTCTTGATTTCTCGGCGG 59.625 55.000 7.21 0.00 0.00 6.13 F
2274 2483 0.888619 GGTTGTTGCTTTAGCCCTCC 59.111 55.000 0.00 0.00 41.18 4.30 F
2447 2787 0.032130 ACTCTTGTCATCGTGCACGT 59.968 50.000 35.74 21.74 40.80 4.49 F
2765 3105 0.037326 GCCGATGGTGAGAACTGTGA 60.037 55.000 0.00 0.00 0.00 3.58 F
4199 5623 1.202806 TCCCAAAGAAGGACACTGCTG 60.203 52.381 0.00 0.00 31.02 4.41 F
4773 6200 1.002888 TCTGAAGCTGGCAAGGAGAAG 59.997 52.381 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1548 1674 1.603455 CCTCACCATTGTGGCCGTT 60.603 57.895 0.00 0.00 42.67 4.44 R
2429 2769 0.436150 CACGTGCACGATGACAAGAG 59.564 55.000 42.94 17.07 43.02 2.85 R
3687 4460 1.207329 AGGATGTTCGGCTGGTAACTC 59.793 52.381 0.00 0.00 37.61 3.01 R
4352 5776 2.107950 TATCGGGAAACACTTGCCTG 57.892 50.000 0.00 0.00 40.81 4.85 R
4708 6132 5.450592 TCTTCTGCATTGCATAACACAAA 57.549 34.783 12.53 0.00 38.13 2.83 R
5611 7288 0.108615 AGGAAACTCGCAGTCGATGG 60.109 55.000 0.00 0.00 44.56 3.51 R
6353 8087 0.321210 CGCCACTTGATGTGTACCCA 60.321 55.000 0.00 0.00 44.81 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.667236 TGGAAGCATATGTTCCTGCG 58.333 50.000 24.83 0.00 43.53 5.18
31 32 1.610363 TATGTTCCTGCGCACCAAAA 58.390 45.000 5.66 0.00 0.00 2.44
32 33 0.749649 ATGTTCCTGCGCACCAAAAA 59.250 45.000 5.66 0.00 0.00 1.94
33 34 0.749649 TGTTCCTGCGCACCAAAAAT 59.250 45.000 5.66 0.00 0.00 1.82
39 41 4.241681 TCCTGCGCACCAAAAATATTTTC 58.758 39.130 5.66 0.78 0.00 2.29
51 53 8.149647 ACCAAAAATATTTTCTGCAGATGTCAA 58.850 29.630 19.04 5.78 0.00 3.18
52 54 8.437742 CCAAAAATATTTTCTGCAGATGTCAAC 58.562 33.333 19.04 0.00 0.00 3.18
91 93 7.807977 AAACACACTGTCAAGTTTCTCATAT 57.192 32.000 0.00 0.00 32.98 1.78
138 140 6.511767 GCCCATGTAAATTGATGTCTCGTAAG 60.512 42.308 0.00 0.00 0.00 2.34
146 148 2.894765 TGATGTCTCGTAAGGTCAACCA 59.105 45.455 1.33 0.00 38.89 3.67
173 175 2.194951 ATACTGCCCTCTCCACCCCA 62.195 60.000 0.00 0.00 0.00 4.96
180 182 1.500783 CCTCTCCACCCCACCAACAT 61.501 60.000 0.00 0.00 0.00 2.71
182 184 0.770166 TCTCCACCCCACCAACATCA 60.770 55.000 0.00 0.00 0.00 3.07
198 200 4.749245 ACATCAAGAAAACCATGTCGTC 57.251 40.909 0.00 0.00 0.00 4.20
211 213 1.080434 GTCGTCGCTGCCTCTCTTT 60.080 57.895 0.00 0.00 0.00 2.52
231 233 6.157211 TCTTTCGTTGTCTATTCTTCCTCAC 58.843 40.000 0.00 0.00 0.00 3.51
249 251 0.392706 ACCACTGTTGCGAGATGACA 59.607 50.000 0.00 0.00 0.00 3.58
258 260 6.593770 ACTGTTGCGAGATGACAAACATATTA 59.406 34.615 0.00 0.00 39.56 0.98
266 268 5.473504 AGATGACAAACATATTATTCCCGCC 59.526 40.000 0.00 0.00 39.56 6.13
277 279 2.213280 TTCCCGCCGGAATGACATA 58.787 52.632 5.05 0.00 43.57 2.29
299 301 2.627945 GTTTATCACCGAGACCATGCA 58.372 47.619 0.00 0.00 0.00 3.96
384 386 1.069204 TCTTGCTTCTCTTGTCAGCGT 59.931 47.619 0.00 0.00 36.24 5.07
392 394 0.596082 TCTTGTCAGCGTCATCGTCA 59.404 50.000 0.00 0.00 39.49 4.35
398 400 1.529438 TCAGCGTCATCGTCAAAAACC 59.471 47.619 0.00 0.00 39.49 3.27
432 449 9.288576 TGAGTTGAAGAAAATAATGTCATGAGT 57.711 29.630 0.00 0.00 0.00 3.41
510 527 2.808202 CGGTCATAAATCCTGCCTCTGG 60.808 54.545 0.00 0.00 0.00 3.86
544 561 2.949644 CCAGAACCCGGTCATAAATTCC 59.050 50.000 0.00 0.00 0.00 3.01
585 603 4.684242 GTGAAACCCAATCAAAATCGGTTC 59.316 41.667 0.00 0.00 35.78 3.62
586 604 3.569250 AACCCAATCAAAATCGGTTCG 57.431 42.857 0.00 0.00 31.06 3.95
587 605 2.510613 ACCCAATCAAAATCGGTTCGT 58.489 42.857 0.00 0.00 0.00 3.85
602 620 3.481028 CGGTTCGTTATATGTCGTGACTG 59.519 47.826 1.23 0.00 0.00 3.51
606 624 5.799681 TCGTTATATGTCGTGACTGTACA 57.200 39.130 0.00 0.00 0.00 2.90
607 625 6.367686 TCGTTATATGTCGTGACTGTACAT 57.632 37.500 0.00 0.23 37.58 2.29
608 626 6.788243 TCGTTATATGTCGTGACTGTACATT 58.212 36.000 0.00 0.00 35.54 2.71
609 627 6.908820 TCGTTATATGTCGTGACTGTACATTC 59.091 38.462 6.28 6.28 35.54 2.67
663 682 1.618343 TGCCTTGAGACGAGTGATGAA 59.382 47.619 0.00 0.00 0.00 2.57
769 789 3.951037 TGCACTTTCCAAATGTGTACTGT 59.049 39.130 0.00 0.00 34.52 3.55
788 808 1.015109 TACACTTTTCAAACCGCGCA 58.985 45.000 8.75 0.00 0.00 6.09
790 810 1.052287 CACTTTTCAAACCGCGCATC 58.948 50.000 8.75 0.00 0.00 3.91
837 857 1.464608 CGGCGTCATTCAATCACTGTT 59.535 47.619 0.00 0.00 0.00 3.16
871 891 4.759516 TCTGTTTCCGCTTTTACCATTC 57.240 40.909 0.00 0.00 0.00 2.67
911 931 0.693049 CCAGCCCAGTACTGTTCCTT 59.307 55.000 21.18 0.00 33.09 3.36
1031 1092 2.334977 TCAGTCCCTCAAGGCAAGTTA 58.665 47.619 0.00 0.00 34.51 2.24
1041 1102 3.846588 TCAAGGCAAGTTAATCTCCTCCT 59.153 43.478 0.00 0.00 0.00 3.69
1082 1176 6.524586 GCGGCTGTTGATTTATAGAATTATGC 59.475 38.462 0.00 0.00 0.00 3.14
1099 1193 2.202756 CAGTTAGCGGTCGAGGGC 60.203 66.667 0.00 0.00 0.00 5.19
1117 1211 0.375106 GCTTCTTGATTTCTCGGCGG 59.625 55.000 7.21 0.00 0.00 6.13
1222 1330 2.941720 CTGTGATAGCCTTGGAGAAAGC 59.058 50.000 0.00 0.00 34.24 3.51
1238 1350 4.860072 AGAAAGCGATTCTTGTTTGGAAC 58.140 39.130 2.38 0.00 46.39 3.62
1239 1351 2.969443 AGCGATTCTTGTTTGGAACG 57.031 45.000 0.00 0.00 0.00 3.95
1240 1352 2.218603 AGCGATTCTTGTTTGGAACGT 58.781 42.857 0.00 0.00 0.00 3.99
1241 1353 3.395639 AGCGATTCTTGTTTGGAACGTA 58.604 40.909 0.00 0.00 0.00 3.57
1385 1505 8.629158 TGTTGAACTTATGTATCTGCTTTTGTT 58.371 29.630 0.00 0.00 0.00 2.83
1386 1506 9.463443 GTTGAACTTATGTATCTGCTTTTGTTT 57.537 29.630 0.00 0.00 0.00 2.83
1413 1533 4.020662 GCTTTTCAGAAGAAGAGAGGGAGA 60.021 45.833 8.46 0.00 38.01 3.71
1446 1572 1.544759 GGTTCCCCGTCTGTCAACAAT 60.545 52.381 0.00 0.00 0.00 2.71
1474 1600 3.256879 GCGAGATAAGATGGTCATGGAGA 59.743 47.826 0.00 0.00 0.00 3.71
1548 1674 2.361757 CAAGGAAACTGATGTTGTGCCA 59.638 45.455 0.00 0.00 42.68 4.92
1633 1759 1.675714 CCGTAGTCTTTCATGCCAGCA 60.676 52.381 0.00 0.00 0.00 4.41
1669 1800 2.115595 CTGAAGCTCGATCACGCTTAG 58.884 52.381 15.90 10.97 45.70 2.18
1670 1801 1.743394 TGAAGCTCGATCACGCTTAGA 59.257 47.619 15.90 5.98 45.70 2.10
1673 1804 2.736978 AGCTCGATCACGCTTAGATTG 58.263 47.619 0.18 0.00 39.58 2.67
1674 1805 2.099921 AGCTCGATCACGCTTAGATTGT 59.900 45.455 0.18 0.00 39.58 2.71
1705 1845 4.973168 TGATAATCTGTAATGGACCCTGC 58.027 43.478 0.00 0.00 0.00 4.85
1708 1848 6.501805 TGATAATCTGTAATGGACCCTGCTAT 59.498 38.462 0.00 0.00 0.00 2.97
1714 1854 6.826741 TCTGTAATGGACCCTGCTATAAAAAC 59.173 38.462 0.00 0.00 0.00 2.43
1716 1856 7.179269 TGTAATGGACCCTGCTATAAAAACTT 58.821 34.615 0.00 0.00 0.00 2.66
1717 1857 8.330247 TGTAATGGACCCTGCTATAAAAACTTA 58.670 33.333 0.00 0.00 0.00 2.24
1718 1858 9.181061 GTAATGGACCCTGCTATAAAAACTTAA 57.819 33.333 0.00 0.00 0.00 1.85
1719 1859 8.658840 AATGGACCCTGCTATAAAAACTTAAA 57.341 30.769 0.00 0.00 0.00 1.52
1720 1860 8.658840 ATGGACCCTGCTATAAAAACTTAAAA 57.341 30.769 0.00 0.00 0.00 1.52
1755 1895 4.319177 ACTGTAATGGAGTCTGAAAGTGC 58.681 43.478 0.00 0.00 33.76 4.40
1761 1901 2.703536 TGGAGTCTGAAAGTGCCTGTTA 59.296 45.455 0.00 0.00 33.76 2.41
1762 1902 3.067833 GGAGTCTGAAAGTGCCTGTTAC 58.932 50.000 0.00 0.00 33.76 2.50
1834 1995 4.130118 CAACTAGTGCTTCCAACACTCTT 58.870 43.478 0.00 0.00 45.06 2.85
1888 2049 3.057946 CCTTCTGCTTAAACTTGACTGCC 60.058 47.826 0.00 0.00 0.00 4.85
1889 2050 3.492102 TCTGCTTAAACTTGACTGCCT 57.508 42.857 0.00 0.00 0.00 4.75
1890 2051 3.403038 TCTGCTTAAACTTGACTGCCTC 58.597 45.455 0.00 0.00 0.00 4.70
1891 2052 3.141398 CTGCTTAAACTTGACTGCCTCA 58.859 45.455 0.00 0.00 0.00 3.86
1892 2053 3.550820 TGCTTAAACTTGACTGCCTCAA 58.449 40.909 0.00 0.00 36.46 3.02
1893 2054 4.144297 TGCTTAAACTTGACTGCCTCAAT 58.856 39.130 0.00 0.00 38.26 2.57
2056 2258 4.019792 AGTGCAACCAATACTCATGACA 57.980 40.909 0.00 0.00 37.80 3.58
2148 2353 5.386924 TGGCATGGTGATATTTGATGATCA 58.613 37.500 0.00 0.00 0.00 2.92
2246 2454 9.566432 GGATGAATATGTTCCTTTGAGAGTAAT 57.434 33.333 0.00 0.00 33.26 1.89
2274 2483 0.888619 GGTTGTTGCTTTAGCCCTCC 59.111 55.000 0.00 0.00 41.18 4.30
2427 2767 7.762159 GCTAAAGTAAGATAAGTCAGCAGTTCT 59.238 37.037 0.00 0.00 0.00 3.01
2429 2769 8.989653 AAAGTAAGATAAGTCAGCAGTTCTAC 57.010 34.615 0.00 0.00 0.00 2.59
2447 2787 0.032130 ACTCTTGTCATCGTGCACGT 59.968 50.000 35.74 21.74 40.80 4.49
2725 3065 1.517242 GCAGTAACAGCAGCAAGAGT 58.483 50.000 0.00 0.00 0.00 3.24
2765 3105 0.037326 GCCGATGGTGAGAACTGTGA 60.037 55.000 0.00 0.00 0.00 3.58
2808 3149 6.918022 CCTTTAGGACATTCTTGTTGTTCAAC 59.082 38.462 8.52 8.52 35.79 3.18
2817 3158 8.473899 ACATTCTTGTTGTTCAACGCTTGAAAA 61.474 33.333 12.60 6.90 41.35 2.29
2844 3185 8.752005 AGCACATTGTCATATTTTACATACCT 57.248 30.769 0.00 0.00 0.00 3.08
3143 3497 8.883731 ACTATGAACAAGCTTCATATGTTACAC 58.116 33.333 6.98 0.00 39.72 2.90
3259 4031 5.690865 TGGTCTTAATTTCTGGACACAGTT 58.309 37.500 0.00 0.00 45.14 3.16
3408 4181 6.269194 TCCCTCCGTCCCATAATATAAGATT 58.731 40.000 0.00 0.00 0.00 2.40
3454 4227 4.965119 AAAACGATCTTATCTTGTGGGC 57.035 40.909 0.00 0.00 0.00 5.36
3529 4302 6.155827 GCTGTTAATTGCCAAAAGACATGTA 58.844 36.000 0.00 0.00 0.00 2.29
3635 4408 8.184192 CACTTCAATCTTTGAACAAACTACAGT 58.816 33.333 0.00 0.00 44.21 3.55
3678 4451 2.752829 GCTATGGAGAGAGCTGAGGAGT 60.753 54.545 0.00 0.00 33.35 3.85
3687 4460 2.564947 AGAGCTGAGGAGTTACTTGTGG 59.435 50.000 0.00 0.00 0.00 4.17
4117 5541 4.044426 CCTTCTCTTTGTTTTTGCTTCCG 58.956 43.478 0.00 0.00 0.00 4.30
4199 5623 1.202806 TCCCAAAGAAGGACACTGCTG 60.203 52.381 0.00 0.00 31.02 4.41
4336 5760 7.012421 GGAGATGTTGTAGTCTTTCAACTTGTT 59.988 37.037 16.19 6.24 42.71 2.83
4352 5776 7.027161 TCAACTTGTTAGTTCAGCAAAGTTTC 58.973 34.615 0.00 0.00 42.67 2.78
4417 5841 9.739276 ATTCTTTTACACTATTGATTGACAGGA 57.261 29.630 0.00 0.00 0.00 3.86
4540 5964 7.603651 TCTCTACACTTTTCATTCAGGTCTAC 58.396 38.462 0.00 0.00 0.00 2.59
4661 6085 2.622942 GTGTTGATTCTGCACTTGGGAA 59.377 45.455 0.00 0.00 0.00 3.97
4665 6089 5.538053 TGTTGATTCTGCACTTGGGAATTTA 59.462 36.000 0.27 0.00 30.98 1.40
4773 6200 1.002888 TCTGAAGCTGGCAAGGAGAAG 59.997 52.381 0.00 0.00 0.00 2.85
4799 6226 4.821805 ACCGAGTGAGTCAAATTTCATTGT 59.178 37.500 0.00 0.00 0.00 2.71
4800 6227 5.149273 CCGAGTGAGTCAAATTTCATTGTG 58.851 41.667 0.00 0.00 0.00 3.33
4801 6228 5.277974 CCGAGTGAGTCAAATTTCATTGTGT 60.278 40.000 0.00 0.00 0.00 3.72
4802 6229 6.201517 CGAGTGAGTCAAATTTCATTGTGTT 58.798 36.000 0.00 0.00 0.00 3.32
4803 6230 6.141211 CGAGTGAGTCAAATTTCATTGTGTTG 59.859 38.462 0.00 0.00 0.00 3.33
4804 6231 7.099266 AGTGAGTCAAATTTCATTGTGTTGA 57.901 32.000 0.00 0.00 0.00 3.18
4805 6232 7.719483 AGTGAGTCAAATTTCATTGTGTTGAT 58.281 30.769 0.00 0.00 31.38 2.57
4806 6233 8.199449 AGTGAGTCAAATTTCATTGTGTTGATT 58.801 29.630 0.00 0.00 31.38 2.57
4807 6234 8.482429 GTGAGTCAAATTTCATTGTGTTGATTC 58.518 33.333 0.00 0.00 36.22 2.52
4808 6235 8.415553 TGAGTCAAATTTCATTGTGTTGATTCT 58.584 29.630 0.00 0.00 36.47 2.40
4809 6236 8.583810 AGTCAAATTTCATTGTGTTGATTCTG 57.416 30.769 0.00 0.00 31.38 3.02
4810 6237 7.170320 AGTCAAATTTCATTGTGTTGATTCTGC 59.830 33.333 0.00 0.00 31.38 4.26
4811 6238 6.985059 TCAAATTTCATTGTGTTGATTCTGCA 59.015 30.769 0.00 0.00 0.00 4.41
4812 6239 6.774354 AATTTCATTGTGTTGATTCTGCAC 57.226 33.333 0.00 4.86 0.00 4.57
4813 6240 5.518848 TTTCATTGTGTTGATTCTGCACT 57.481 34.783 10.73 0.00 34.52 4.40
4814 6241 4.754372 TCATTGTGTTGATTCTGCACTC 57.246 40.909 10.73 0.00 34.52 3.51
4815 6242 3.187022 TCATTGTGTTGATTCTGCACTCG 59.813 43.478 10.73 0.00 34.52 4.18
4816 6243 2.238942 TGTGTTGATTCTGCACTCGT 57.761 45.000 10.73 0.00 34.52 4.18
4817 6244 1.866601 TGTGTTGATTCTGCACTCGTG 59.133 47.619 10.73 0.00 34.52 4.35
4818 6245 2.135139 GTGTTGATTCTGCACTCGTGA 58.865 47.619 0.39 0.00 0.00 4.35
4819 6246 2.543848 GTGTTGATTCTGCACTCGTGAA 59.456 45.455 0.39 0.00 0.00 3.18
4820 6247 3.002246 GTGTTGATTCTGCACTCGTGAAA 59.998 43.478 0.39 0.00 0.00 2.69
4821 6248 3.814842 TGTTGATTCTGCACTCGTGAAAT 59.185 39.130 0.39 0.00 0.00 2.17
4822 6249 4.275689 TGTTGATTCTGCACTCGTGAAATT 59.724 37.500 0.39 0.00 0.00 1.82
4823 6250 5.215160 GTTGATTCTGCACTCGTGAAATTT 58.785 37.500 0.39 0.00 0.00 1.82
4824 6251 4.786507 TGATTCTGCACTCGTGAAATTTG 58.213 39.130 0.00 0.00 0.00 2.32
4825 6252 2.686558 TCTGCACTCGTGAAATTTGC 57.313 45.000 0.00 0.00 0.00 3.68
4826 6253 2.221169 TCTGCACTCGTGAAATTTGCT 58.779 42.857 0.00 0.00 34.18 3.91
4827 6254 3.398406 TCTGCACTCGTGAAATTTGCTA 58.602 40.909 0.00 0.00 34.18 3.49
4828 6255 4.002982 TCTGCACTCGTGAAATTTGCTAT 58.997 39.130 0.00 0.00 34.18 2.97
4829 6256 5.175127 TCTGCACTCGTGAAATTTGCTATA 58.825 37.500 0.00 0.00 34.18 1.31
4830 6257 5.063438 TCTGCACTCGTGAAATTTGCTATAC 59.937 40.000 0.00 0.00 34.18 1.47
4831 6258 4.693095 TGCACTCGTGAAATTTGCTATACA 59.307 37.500 0.00 0.00 34.18 2.29
4832 6259 5.353956 TGCACTCGTGAAATTTGCTATACAT 59.646 36.000 0.00 0.00 34.18 2.29
4833 6260 5.678483 GCACTCGTGAAATTTGCTATACATG 59.322 40.000 0.00 0.00 0.00 3.21
4834 6261 6.194463 CACTCGTGAAATTTGCTATACATGG 58.806 40.000 0.00 0.00 0.00 3.66
4835 6262 6.037062 CACTCGTGAAATTTGCTATACATGGA 59.963 38.462 0.00 0.00 0.00 3.41
4836 6263 6.767902 ACTCGTGAAATTTGCTATACATGGAT 59.232 34.615 0.00 0.00 0.00 3.41
4837 6264 7.931407 ACTCGTGAAATTTGCTATACATGGATA 59.069 33.333 0.00 0.00 0.00 2.59
4838 6265 8.669946 TCGTGAAATTTGCTATACATGGATAA 57.330 30.769 0.00 0.00 0.00 1.75
4839 6266 8.773645 TCGTGAAATTTGCTATACATGGATAAG 58.226 33.333 0.00 0.00 0.00 1.73
4840 6267 8.559536 CGTGAAATTTGCTATACATGGATAAGT 58.440 33.333 0.00 0.00 0.00 2.24
4846 6273 9.860650 ATTTGCTATACATGGATAAGTTAACCA 57.139 29.630 13.69 13.69 38.09 3.67
4847 6274 9.860650 TTTGCTATACATGGATAAGTTAACCAT 57.139 29.630 16.76 16.76 43.97 3.55
4848 6275 9.860650 TTGCTATACATGGATAAGTTAACCATT 57.139 29.630 19.21 13.80 41.68 3.16
4849 6276 9.283768 TGCTATACATGGATAAGTTAACCATTG 57.716 33.333 19.21 16.42 41.68 2.82
4850 6277 9.502091 GCTATACATGGATAAGTTAACCATTGA 57.498 33.333 19.21 11.89 41.68 2.57
4855 6282 9.479549 ACATGGATAAGTTAACCATTGAATCTT 57.520 29.630 19.21 0.00 41.68 2.40
4856 6283 9.956720 CATGGATAAGTTAACCATTGAATCTTC 57.043 33.333 19.21 0.00 41.68 2.87
4857 6284 9.927081 ATGGATAAGTTAACCATTGAATCTTCT 57.073 29.630 16.76 0.00 40.91 2.85
4858 6285 9.177608 TGGATAAGTTAACCATTGAATCTTCTG 57.822 33.333 7.76 0.00 0.00 3.02
4859 6286 9.396022 GGATAAGTTAACCATTGAATCTTCTGA 57.604 33.333 0.88 0.00 0.00 3.27
4863 6290 8.868522 AGTTAACCATTGAATCTTCTGAATCA 57.131 30.769 0.88 0.00 30.93 2.57
4864 6291 9.471702 AGTTAACCATTGAATCTTCTGAATCAT 57.528 29.630 0.88 0.00 32.77 2.45
5051 6478 3.713858 TTGTGTTGATTCTGCACTTGG 57.286 42.857 10.73 0.00 34.52 3.61
5052 6479 1.955778 TGTGTTGATTCTGCACTTGGG 59.044 47.619 10.73 0.00 34.52 4.12
5207 6634 4.754372 TCATTGTGTTGATTCTGCACTC 57.246 40.909 10.73 0.00 34.52 3.51
5213 6640 3.002246 GTGTTGATTCTGCACTCGTGAAA 59.998 43.478 0.39 0.00 0.00 2.69
5216 6643 5.215160 GTTGATTCTGCACTCGTGAAATTT 58.785 37.500 0.39 0.00 0.00 1.82
5217 6644 4.786507 TGATTCTGCACTCGTGAAATTTG 58.213 39.130 0.00 0.00 0.00 2.32
5294 6967 5.535333 CAATGCACAAGAAGAAAGTTCCAT 58.465 37.500 0.00 0.00 0.00 3.41
5343 7016 5.163499 GGAGAAGATACCGAGTGAGTCAAAT 60.163 44.000 0.00 0.00 0.00 2.32
5375 7048 5.978919 TGTTGATTCTGCACTTGTGAATTTC 59.021 36.000 4.79 0.00 31.49 2.17
5611 7288 2.088674 ATCATCGTAGACGGCCTGGC 62.089 60.000 11.05 11.05 42.51 4.85
5636 7313 0.468226 ACTGCGAGTTTCCTGACCAA 59.532 50.000 0.00 0.00 0.00 3.67
5638 7315 0.179234 TGCGAGTTTCCTGACCAACA 59.821 50.000 0.00 0.00 0.00 3.33
5712 7389 1.144913 ACCTGCTCAAAGGGCTAAACA 59.855 47.619 0.00 0.00 42.11 2.83
5756 7433 1.675552 TGGAGACTATCGACATCGCA 58.324 50.000 0.00 0.00 39.60 5.10
6239 7934 2.229302 GTGGCGGCAGTATTTGGTTTTA 59.771 45.455 13.91 0.00 0.00 1.52
6247 7942 6.293735 CGGCAGTATTTGGTTTTAAGAGTGAA 60.294 38.462 0.00 0.00 0.00 3.18
6387 8121 0.752658 TGGCGTGACCTATCTCCATG 59.247 55.000 0.00 0.00 40.22 3.66
6440 8179 2.658285 CTGTGACAGTGCTGAAAATGC 58.342 47.619 4.01 0.00 0.00 3.56
6447 8190 3.825014 ACAGTGCTGAAAATGCAAGAGAT 59.175 39.130 6.17 0.00 42.41 2.75
6471 8215 4.619973 TGCAGTTTGCTTTGAGTATTTGG 58.380 39.130 2.48 0.00 45.31 3.28
6529 8277 3.766151 TGCTAGTACGAGTATTGTGCAC 58.234 45.455 10.75 10.75 37.59 4.57
6555 8304 4.339247 AGCTGCTTTGCTTGTTTTCTTCTA 59.661 37.500 0.00 0.00 40.93 2.10
6585 8335 3.550842 GCTGATTCGGCTTGTTGAAGTTT 60.551 43.478 10.31 0.00 32.24 2.66
6603 8356 2.970324 GACACCGTTTGCCTCGCA 60.970 61.111 0.00 0.00 36.47 5.10
6612 8365 3.848301 TTGCCTCGCATGCACCTGT 62.848 57.895 19.57 0.00 38.76 4.00
6613 8366 3.807538 GCCTCGCATGCACCTGTG 61.808 66.667 19.57 0.00 0.00 3.66
6987 8740 2.647356 CCTGTAGATCGATCGGGCT 58.353 57.895 19.33 14.73 0.00 5.19
6988 8741 0.523966 CCTGTAGATCGATCGGGCTC 59.476 60.000 19.33 9.93 0.00 4.70
6989 8742 0.167033 CTGTAGATCGATCGGGCTCG 59.833 60.000 19.33 0.00 39.99 5.03
6990 8743 0.534427 TGTAGATCGATCGGGCTCGT 60.534 55.000 19.33 3.13 39.62 4.18
6991 8744 0.166379 GTAGATCGATCGGGCTCGTC 59.834 60.000 19.33 1.73 39.62 4.20
6992 8745 0.250166 TAGATCGATCGGGCTCGTCA 60.250 55.000 19.33 0.00 39.62 4.35
6993 8746 1.101635 AGATCGATCGGGCTCGTCAA 61.102 55.000 19.33 0.00 39.62 3.18
6994 8747 0.935366 GATCGATCGGGCTCGTCAAC 60.935 60.000 16.41 0.00 39.62 3.18
6995 8748 1.663379 ATCGATCGGGCTCGTCAACA 61.663 55.000 16.41 0.00 39.62 3.33
6996 8749 1.226974 CGATCGGGCTCGTCAACAT 60.227 57.895 5.57 0.00 37.69 2.71
6997 8750 0.806102 CGATCGGGCTCGTCAACATT 60.806 55.000 5.57 0.00 37.69 2.71
6998 8751 1.369625 GATCGGGCTCGTCAACATTT 58.630 50.000 5.57 0.00 37.69 2.32
6999 8752 1.737793 GATCGGGCTCGTCAACATTTT 59.262 47.619 5.57 0.00 37.69 1.82
7000 8753 1.600023 TCGGGCTCGTCAACATTTTT 58.400 45.000 5.57 0.00 37.69 1.94
7032 8785 5.262588 GGCATTACCCCTTTTCATTACTG 57.737 43.478 0.00 0.00 0.00 2.74
7033 8786 4.441495 GGCATTACCCCTTTTCATTACTGC 60.441 45.833 0.00 0.00 0.00 4.40
7034 8787 4.159506 GCATTACCCCTTTTCATTACTGCA 59.840 41.667 0.00 0.00 0.00 4.41
7035 8788 5.337169 GCATTACCCCTTTTCATTACTGCAA 60.337 40.000 0.00 0.00 0.00 4.08
7036 8789 5.715434 TTACCCCTTTTCATTACTGCAAC 57.285 39.130 0.00 0.00 0.00 4.17
7037 8790 3.571590 ACCCCTTTTCATTACTGCAACA 58.428 40.909 0.00 0.00 0.00 3.33
7038 8791 4.159557 ACCCCTTTTCATTACTGCAACAT 58.840 39.130 0.00 0.00 0.00 2.71
7039 8792 5.329399 ACCCCTTTTCATTACTGCAACATA 58.671 37.500 0.00 0.00 0.00 2.29
7040 8793 5.777732 ACCCCTTTTCATTACTGCAACATAA 59.222 36.000 0.00 0.00 0.00 1.90
7041 8794 6.099341 CCCCTTTTCATTACTGCAACATAAC 58.901 40.000 0.00 0.00 0.00 1.89
7042 8795 5.799936 CCCTTTTCATTACTGCAACATAACG 59.200 40.000 0.00 0.00 0.00 3.18
7043 8796 6.348950 CCCTTTTCATTACTGCAACATAACGA 60.349 38.462 0.00 0.00 0.00 3.85
7044 8797 7.081349 CCTTTTCATTACTGCAACATAACGAA 58.919 34.615 0.00 0.00 0.00 3.85
7045 8798 7.593273 CCTTTTCATTACTGCAACATAACGAAA 59.407 33.333 0.00 0.00 0.00 3.46
7046 8799 8.858003 TTTTCATTACTGCAACATAACGAAAA 57.142 26.923 11.76 11.76 32.86 2.29
7047 8800 9.469807 TTTTCATTACTGCAACATAACGAAAAT 57.530 25.926 11.76 0.00 31.29 1.82
7049 8802 9.549509 TTCATTACTGCAACATAACGAAAATAC 57.450 29.630 0.00 0.00 0.00 1.89
7050 8803 8.722394 TCATTACTGCAACATAACGAAAATACA 58.278 29.630 0.00 0.00 0.00 2.29
7051 8804 9.335891 CATTACTGCAACATAACGAAAATACAA 57.664 29.630 0.00 0.00 0.00 2.41
7052 8805 8.716619 TTACTGCAACATAACGAAAATACAAC 57.283 30.769 0.00 0.00 0.00 3.32
7053 8806 6.730175 ACTGCAACATAACGAAAATACAACA 58.270 32.000 0.00 0.00 0.00 3.33
7054 8807 6.855914 ACTGCAACATAACGAAAATACAACAG 59.144 34.615 0.00 0.00 0.00 3.16
7055 8808 6.730175 TGCAACATAACGAAAATACAACAGT 58.270 32.000 0.00 0.00 0.00 3.55
7056 8809 6.853872 TGCAACATAACGAAAATACAACAGTC 59.146 34.615 0.00 0.00 0.00 3.51
7057 8810 6.304683 GCAACATAACGAAAATACAACAGTCC 59.695 38.462 0.00 0.00 0.00 3.85
7058 8811 7.356540 CAACATAACGAAAATACAACAGTCCA 58.643 34.615 0.00 0.00 0.00 4.02
7059 8812 7.499321 ACATAACGAAAATACAACAGTCCAA 57.501 32.000 0.00 0.00 0.00 3.53
7060 8813 7.932335 ACATAACGAAAATACAACAGTCCAAA 58.068 30.769 0.00 0.00 0.00 3.28
7061 8814 8.073768 ACATAACGAAAATACAACAGTCCAAAG 58.926 33.333 0.00 0.00 0.00 2.77
7062 8815 6.687081 AACGAAAATACAACAGTCCAAAGA 57.313 33.333 0.00 0.00 0.00 2.52
7063 8816 6.687081 ACGAAAATACAACAGTCCAAAGAA 57.313 33.333 0.00 0.00 0.00 2.52
7064 8817 7.090953 ACGAAAATACAACAGTCCAAAGAAA 57.909 32.000 0.00 0.00 0.00 2.52
7065 8818 7.193595 ACGAAAATACAACAGTCCAAAGAAAG 58.806 34.615 0.00 0.00 0.00 2.62
7066 8819 6.636850 CGAAAATACAACAGTCCAAAGAAAGG 59.363 38.462 0.00 0.00 0.00 3.11
7067 8820 7.468084 CGAAAATACAACAGTCCAAAGAAAGGA 60.468 37.037 0.00 0.00 0.00 3.36
7076 8829 3.304829 TCCAAAGAAAGGACAAAAGGGG 58.695 45.455 0.00 0.00 0.00 4.79
7077 8830 3.052490 TCCAAAGAAAGGACAAAAGGGGA 60.052 43.478 0.00 0.00 0.00 4.81
7078 8831 3.709141 CCAAAGAAAGGACAAAAGGGGAA 59.291 43.478 0.00 0.00 0.00 3.97
7079 8832 4.202253 CCAAAGAAAGGACAAAAGGGGAAG 60.202 45.833 0.00 0.00 0.00 3.46
7080 8833 2.598565 AGAAAGGACAAAAGGGGAAGC 58.401 47.619 0.00 0.00 0.00 3.86
7081 8834 1.269723 GAAAGGACAAAAGGGGAAGCG 59.730 52.381 0.00 0.00 0.00 4.68
7082 8835 0.476771 AAGGACAAAAGGGGAAGCGA 59.523 50.000 0.00 0.00 0.00 4.93
7083 8836 0.036875 AGGACAAAAGGGGAAGCGAG 59.963 55.000 0.00 0.00 0.00 5.03
7084 8837 0.250770 GGACAAAAGGGGAAGCGAGT 60.251 55.000 0.00 0.00 0.00 4.18
7085 8838 1.157585 GACAAAAGGGGAAGCGAGTC 58.842 55.000 0.00 0.00 0.00 3.36
7086 8839 0.250770 ACAAAAGGGGAAGCGAGTCC 60.251 55.000 0.00 0.00 36.90 3.85
7087 8840 0.250727 CAAAAGGGGAAGCGAGTCCA 60.251 55.000 7.08 0.00 39.70 4.02
7088 8841 0.476771 AAAAGGGGAAGCGAGTCCAA 59.523 50.000 7.08 0.00 39.70 3.53
7089 8842 0.250770 AAAGGGGAAGCGAGTCCAAC 60.251 55.000 7.08 0.16 39.70 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.434593 GCAGAAAATATTTTTGGTGCGCAG 60.435 41.667 12.22 0.00 0.00 5.18
23 24 6.369615 ACATCTGCAGAAAATATTTTTGGTGC 59.630 34.615 22.50 23.65 34.73 5.01
31 32 9.768662 AAAAAGTTGACATCTGCAGAAAATATT 57.231 25.926 22.50 7.27 0.00 1.28
74 76 9.338291 CAATCAAACATATGAGAAACTTGACAG 57.662 33.333 10.38 2.15 31.76 3.51
91 93 5.982516 GGCATGTAACTTTCACAATCAAACA 59.017 36.000 0.00 0.00 0.00 2.83
110 112 5.524971 AGACATCAATTTACATGGGCATG 57.475 39.130 0.00 0.00 44.15 4.06
123 125 4.020573 TGGTTGACCTTACGAGACATCAAT 60.021 41.667 1.34 0.00 36.82 2.57
128 130 3.659786 CATTGGTTGACCTTACGAGACA 58.340 45.455 1.34 0.00 36.82 3.41
129 131 2.415512 GCATTGGTTGACCTTACGAGAC 59.584 50.000 1.34 0.00 36.82 3.36
138 140 2.164219 CAGTATGGTGCATTGGTTGACC 59.836 50.000 0.00 0.00 0.00 4.02
146 148 0.921896 AGAGGGCAGTATGGTGCATT 59.078 50.000 0.00 0.00 45.93 3.56
173 175 4.261572 CGACATGGTTTTCTTGATGTTGGT 60.262 41.667 0.00 0.00 29.77 3.67
180 182 1.529438 GCGACGACATGGTTTTCTTGA 59.471 47.619 0.00 0.00 0.00 3.02
182 184 1.531149 CAGCGACGACATGGTTTTCTT 59.469 47.619 0.00 0.00 0.00 2.52
198 200 0.946221 ACAACGAAAGAGAGGCAGCG 60.946 55.000 0.00 0.00 0.00 5.18
211 213 3.830178 TGGTGAGGAAGAATAGACAACGA 59.170 43.478 0.00 0.00 0.00 3.85
231 233 1.511850 TTGTCATCTCGCAACAGTGG 58.488 50.000 0.00 0.00 0.00 4.00
249 251 3.495434 TCCGGCGGGAATAATATGTTT 57.505 42.857 27.98 0.00 40.15 2.83
266 268 5.924475 GGTGATAAACCTATGTCATTCCG 57.076 43.478 0.00 0.00 46.55 4.30
381 383 3.369756 TCATAGGTTTTTGACGATGACGC 59.630 43.478 0.00 0.00 43.96 5.19
384 386 8.204160 ACTCATATCATAGGTTTTTGACGATGA 58.796 33.333 0.00 0.00 36.38 2.92
462 479 7.415989 GGTTCTGACGTATATGAACTACTTCCA 60.416 40.741 16.37 0.00 38.86 3.53
510 527 3.274288 GGGTTCTGGTGATCATCTCAAC 58.726 50.000 7.64 9.41 42.34 3.18
580 598 3.481028 CAGTCACGACATATAACGAACCG 59.519 47.826 0.00 0.00 0.00 4.44
585 603 6.910972 AGAATGTACAGTCACGACATATAACG 59.089 38.462 23.89 0.00 33.48 3.18
586 604 8.630278 AAGAATGTACAGTCACGACATATAAC 57.370 34.615 23.89 0.00 33.48 1.89
587 605 9.647797 AAAAGAATGTACAGTCACGACATATAA 57.352 29.630 23.89 0.00 33.48 0.98
769 789 1.015109 TGCGCGGTTTGAAAAGTGTA 58.985 45.000 8.83 0.00 0.00 2.90
788 808 2.095263 CGGTTGATTGCTTTTCACCGAT 60.095 45.455 10.64 0.00 38.71 4.18
790 810 1.265635 TCGGTTGATTGCTTTTCACCG 59.734 47.619 10.06 10.06 38.24 4.94
799 819 1.062002 CCGTGTATGTCGGTTGATTGC 59.938 52.381 0.00 0.00 42.62 3.56
837 857 2.070783 GAAACAGATTACCGTTCGGCA 58.929 47.619 11.32 0.00 0.00 5.69
871 891 7.433680 GCTGGGGTAAATAAATAATGTGGAAG 58.566 38.462 0.00 0.00 0.00 3.46
911 931 2.454941 GTGGAGGAAGGAGGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
990 1051 4.227134 ATCGCCATCGCTTCCGCT 62.227 61.111 0.00 0.00 35.26 5.52
1031 1092 6.112058 CGAATCAAAGAAAGAGGAGGAGATT 58.888 40.000 0.00 0.00 0.00 2.40
1041 1102 1.196808 GCCGCACGAATCAAAGAAAGA 59.803 47.619 0.00 0.00 0.00 2.52
1082 1176 2.202756 GCCCTCGACCGCTAACTG 60.203 66.667 0.00 0.00 0.00 3.16
1099 1193 1.661112 GACCGCCGAGAAATCAAGAAG 59.339 52.381 0.00 0.00 0.00 2.85
1117 1211 7.627300 GCTCCATTAACCAAAGATTCAAGAGAC 60.627 40.741 0.00 0.00 0.00 3.36
1373 1493 3.464111 AAGCAGCAAACAAAAGCAGAT 57.536 38.095 0.00 0.00 0.00 2.90
1385 1505 4.454678 TCTCTTCTTCTGAAAAGCAGCAA 58.545 39.130 0.00 0.00 44.52 3.91
1386 1506 4.063689 CTCTCTTCTTCTGAAAAGCAGCA 58.936 43.478 0.00 0.00 44.52 4.41
1413 1533 1.920835 GGAACCTCCTCCTGCTGGT 60.921 63.158 9.73 0.00 32.53 4.00
1446 1572 2.484651 GACCATCTTATCTCGCTCGCTA 59.515 50.000 0.00 0.00 0.00 4.26
1503 1629 4.742201 TCGCTGTCGAGCAAGGCC 62.742 66.667 0.00 0.00 46.62 5.19
1548 1674 1.603455 CCTCACCATTGTGGCCGTT 60.603 57.895 0.00 0.00 42.67 4.44
1633 1759 8.137437 TCGAGCTTCAGAAAAGAAATTGAAATT 58.863 29.630 0.00 0.00 0.00 1.82
1669 1800 5.587844 ACAGATTATCAGAGGCACAACAATC 59.412 40.000 0.00 0.00 0.00 2.67
1670 1801 5.503927 ACAGATTATCAGAGGCACAACAAT 58.496 37.500 0.00 0.00 0.00 2.71
1673 1804 6.017605 CCATTACAGATTATCAGAGGCACAAC 60.018 42.308 0.00 0.00 0.00 3.32
1674 1805 6.057533 CCATTACAGATTATCAGAGGCACAA 58.942 40.000 0.00 0.00 0.00 3.33
1755 1895 7.497925 AAAGAAGCTTAAACAGAGTAACAGG 57.502 36.000 0.00 0.00 0.00 4.00
1782 1943 7.335422 CAGTACTATTGAGGCAGTGAAGATTTT 59.665 37.037 0.00 0.00 0.00 1.82
1888 2049 5.828747 CCAATCAAATGGCAGACTATTGAG 58.171 41.667 13.70 4.41 33.91 3.02
1889 2050 5.840243 CCAATCAAATGGCAGACTATTGA 57.160 39.130 13.70 9.66 34.80 2.57
2132 2337 8.563123 ATCATCCTGTGATCATCAAATATCAC 57.437 34.615 0.00 8.20 44.23 3.06
2148 2353 3.589951 ATTGCAAGCCTATCATCCTGT 57.410 42.857 4.94 0.00 0.00 4.00
2246 2454 3.902881 AAAGCAACAACCATGGTTCAA 57.097 38.095 27.56 0.00 37.51 2.69
2427 2767 1.268625 ACGTGCACGATGACAAGAGTA 59.731 47.619 42.94 0.00 43.02 2.59
2429 2769 0.436150 CACGTGCACGATGACAAGAG 59.564 55.000 42.94 17.07 43.02 2.85
2447 2787 6.729391 TTTTCCACGATAACGATCAAATCA 57.271 33.333 0.00 0.00 42.66 2.57
2725 3065 4.363138 GCACAAGATCATCATCTACGTCA 58.637 43.478 0.00 0.00 38.55 4.35
2817 3158 9.801873 GGTATGTAAAATATGACAATGTGCTTT 57.198 29.630 0.00 0.00 0.00 3.51
2896 3243 5.716228 TGACCTGCTCAAACCAAATTATGAT 59.284 36.000 0.00 0.00 0.00 2.45
3077 3431 6.100668 ACTAATCGAAAGTGAGGAAAGTAGC 58.899 40.000 3.20 0.00 0.00 3.58
3086 3440 7.059945 GCATGTTTTGAACTAATCGAAAGTGAG 59.940 37.037 4.71 0.00 41.16 3.51
3454 4227 3.895998 AGTTAGTTAGTACTCCCTCCGG 58.104 50.000 0.00 0.00 35.78 5.14
3635 4408 2.781174 AGACCCAAAGTTACCCTGAACA 59.219 45.455 0.00 0.00 0.00 3.18
3678 4451 2.289195 CGGCTGGTAACTCCACAAGTAA 60.289 50.000 0.00 0.00 41.93 2.24
3687 4460 1.207329 AGGATGTTCGGCTGGTAACTC 59.793 52.381 0.00 0.00 37.61 3.01
4117 5541 5.973158 ACAAACGTAAAATTCAAATGCAGC 58.027 33.333 0.00 0.00 0.00 5.25
4199 5623 4.125703 CCATCCTCATCTTCTAGCACAAC 58.874 47.826 0.00 0.00 0.00 3.32
4336 5760 3.550820 TGCCTGAAACTTTGCTGAACTA 58.449 40.909 0.00 0.00 0.00 2.24
4352 5776 2.107950 TATCGGGAAACACTTGCCTG 57.892 50.000 0.00 0.00 40.81 4.85
4680 6104 7.307493 TGATTCAGAAGATTCATTGGTTACG 57.693 36.000 0.00 0.00 31.24 3.18
4708 6132 5.450592 TCTTCTGCATTGCATAACACAAA 57.549 34.783 12.53 0.00 38.13 2.83
4773 6200 6.910536 ATGAAATTTGACTCACTCGGTATC 57.089 37.500 0.00 0.00 0.00 2.24
4799 6226 2.524569 TCACGAGTGCAGAATCAACA 57.475 45.000 0.00 0.00 0.00 3.33
4800 6227 3.878086 TTTCACGAGTGCAGAATCAAC 57.122 42.857 0.00 0.00 0.00 3.18
4801 6228 5.214417 CAAATTTCACGAGTGCAGAATCAA 58.786 37.500 0.00 0.00 0.00 2.57
4802 6229 4.786507 CAAATTTCACGAGTGCAGAATCA 58.213 39.130 0.00 0.00 0.00 2.57
4803 6230 3.605486 GCAAATTTCACGAGTGCAGAATC 59.395 43.478 0.00 0.00 35.28 2.52
4804 6231 3.254166 AGCAAATTTCACGAGTGCAGAAT 59.746 39.130 0.00 0.00 37.68 2.40
4805 6232 2.618241 AGCAAATTTCACGAGTGCAGAA 59.382 40.909 0.00 0.00 37.68 3.02
4806 6233 2.221169 AGCAAATTTCACGAGTGCAGA 58.779 42.857 0.00 0.00 37.68 4.26
4807 6234 2.693797 AGCAAATTTCACGAGTGCAG 57.306 45.000 0.00 0.00 37.68 4.41
4808 6235 4.693095 TGTATAGCAAATTTCACGAGTGCA 59.307 37.500 0.00 0.00 37.68 4.57
4809 6236 5.216566 TGTATAGCAAATTTCACGAGTGC 57.783 39.130 0.00 0.00 35.41 4.40
4810 6237 6.037062 TCCATGTATAGCAAATTTCACGAGTG 59.963 38.462 0.00 0.00 0.00 3.51
4811 6238 6.112734 TCCATGTATAGCAAATTTCACGAGT 58.887 36.000 0.00 0.00 0.00 4.18
4812 6239 6.603237 TCCATGTATAGCAAATTTCACGAG 57.397 37.500 0.00 0.00 0.00 4.18
4813 6240 8.669946 TTATCCATGTATAGCAAATTTCACGA 57.330 30.769 0.00 0.00 0.00 4.35
4814 6241 8.559536 ACTTATCCATGTATAGCAAATTTCACG 58.440 33.333 0.00 0.00 0.00 4.35
4820 6247 9.860650 TGGTTAACTTATCCATGTATAGCAAAT 57.139 29.630 5.42 0.00 0.00 2.32
4821 6248 9.860650 ATGGTTAACTTATCCATGTATAGCAAA 57.139 29.630 5.42 0.00 40.00 3.68
4822 6249 9.860650 AATGGTTAACTTATCCATGTATAGCAA 57.139 29.630 10.85 0.00 41.12 3.91
4823 6250 9.283768 CAATGGTTAACTTATCCATGTATAGCA 57.716 33.333 10.85 0.00 41.12 3.49
4824 6251 9.502091 TCAATGGTTAACTTATCCATGTATAGC 57.498 33.333 10.85 0.00 41.12 2.97
4829 6256 9.479549 AAGATTCAATGGTTAACTTATCCATGT 57.520 29.630 10.85 1.97 41.12 3.21
4830 6257 9.956720 GAAGATTCAATGGTTAACTTATCCATG 57.043 33.333 10.85 6.92 41.12 3.66
4831 6258 9.927081 AGAAGATTCAATGGTTAACTTATCCAT 57.073 29.630 5.42 5.78 42.82 3.41
4832 6259 9.177608 CAGAAGATTCAATGGTTAACTTATCCA 57.822 33.333 5.42 1.75 35.64 3.41
4833 6260 9.396022 TCAGAAGATTCAATGGTTAACTTATCC 57.604 33.333 5.42 0.00 0.00 2.59
4837 6264 9.300681 TGATTCAGAAGATTCAATGGTTAACTT 57.699 29.630 5.42 0.00 32.78 2.66
4838 6265 8.868522 TGATTCAGAAGATTCAATGGTTAACT 57.131 30.769 5.42 0.00 32.78 2.24
5027 6454 5.283294 CAAGTGCAGAATCAACACAATGAA 58.717 37.500 8.09 0.00 36.76 2.57
5028 6455 4.261698 CCAAGTGCAGAATCAACACAATGA 60.262 41.667 8.09 0.00 36.76 2.57
5029 6456 3.985279 CCAAGTGCAGAATCAACACAATG 59.015 43.478 8.09 6.51 36.76 2.82
5030 6457 3.006110 CCCAAGTGCAGAATCAACACAAT 59.994 43.478 8.09 0.00 36.76 2.71
5031 6458 2.361757 CCCAAGTGCAGAATCAACACAA 59.638 45.455 8.09 0.00 36.76 3.33
5032 6459 1.955778 CCCAAGTGCAGAATCAACACA 59.044 47.619 8.09 0.00 36.76 3.72
5033 6460 2.229792 TCCCAAGTGCAGAATCAACAC 58.770 47.619 0.00 0.00 34.48 3.32
5034 6461 2.655090 TCCCAAGTGCAGAATCAACA 57.345 45.000 0.00 0.00 0.00 3.33
5035 6462 4.525912 AATTCCCAAGTGCAGAATCAAC 57.474 40.909 0.00 0.00 30.06 3.18
5036 6463 6.855763 ATAAATTCCCAAGTGCAGAATCAA 57.144 33.333 0.00 0.00 30.06 2.57
5037 6464 6.855763 AATAAATTCCCAAGTGCAGAATCA 57.144 33.333 0.00 0.00 30.06 2.57
5038 6465 9.899226 GTATAATAAATTCCCAAGTGCAGAATC 57.101 33.333 0.00 0.00 30.06 2.52
5039 6466 9.420118 TGTATAATAAATTCCCAAGTGCAGAAT 57.580 29.630 0.00 0.00 0.00 2.40
5040 6467 8.815565 TGTATAATAAATTCCCAAGTGCAGAA 57.184 30.769 0.00 0.00 0.00 3.02
5278 6951 6.973843 TGACATCAATGGAACTTTCTTCTTG 58.026 36.000 0.00 0.00 0.00 3.02
5294 6967 3.192001 GCCAGCTTCAGATTTGACATCAA 59.808 43.478 0.00 0.00 31.71 2.57
5343 7016 5.518848 AGTGCAGAATCAACACAATGAAA 57.481 34.783 8.09 0.00 36.76 2.69
5375 7048 9.725019 TCAATGGTTAGCTTATCCATGTATAAG 57.275 33.333 12.45 12.45 41.12 1.73
5611 7288 0.108615 AGGAAACTCGCAGTCGATGG 60.109 55.000 0.00 0.00 44.56 3.51
5693 7370 1.909700 TGTTTAGCCCTTTGAGCAGG 58.090 50.000 0.00 0.00 0.00 4.85
5729 7406 1.813178 TCGATAGTCTCCATGATCGCC 59.187 52.381 7.21 0.00 40.70 5.54
6112 7807 3.904136 ATATTTATTGTCTGCGGCAGC 57.096 42.857 24.78 19.05 45.41 5.25
6149 7844 5.608449 TCATCTTCCTCTGCATACTGAATG 58.392 41.667 0.00 0.00 38.74 2.67
6150 7845 5.883685 TCATCTTCCTCTGCATACTGAAT 57.116 39.130 0.00 0.00 0.00 2.57
6298 7993 5.048846 ACAAGAAGTGTAACCAAGATGGT 57.951 39.130 0.00 0.00 42.91 3.55
6352 8086 1.880221 CGCCACTTGATGTGTACCCAA 60.880 52.381 0.00 0.00 44.81 4.12
6353 8087 0.321210 CGCCACTTGATGTGTACCCA 60.321 55.000 0.00 0.00 44.81 4.51
6371 8105 0.752658 TGGCATGGAGATAGGTCACG 59.247 55.000 0.00 0.00 0.00 4.35
6419 8158 2.658285 CATTTTCAGCACTGTCACAGC 58.342 47.619 4.13 0.00 34.37 4.40
6471 8215 3.968649 ACACACATTCAAATGCACTCAC 58.031 40.909 2.66 0.00 40.04 3.51
6529 8277 0.872881 AAACAAGCAAAGCAGCTGCG 60.873 50.000 31.78 19.50 45.89 5.18
6555 8304 2.185350 CCGAATCAGCAGCGACCT 59.815 61.111 0.00 0.00 0.00 3.85
6585 8335 2.970324 GCGAGGCAAACGGTGTCA 60.970 61.111 0.00 0.00 32.63 3.58
6969 8722 0.523966 GAGCCCGATCGATCTACAGG 59.476 60.000 22.43 17.27 0.00 4.00
6970 8723 0.167033 CGAGCCCGATCGATCTACAG 59.833 60.000 22.43 7.39 45.56 2.74
6971 8724 0.534427 ACGAGCCCGATCGATCTACA 60.534 55.000 22.43 0.00 45.56 2.74
6972 8725 0.166379 GACGAGCCCGATCGATCTAC 59.834 60.000 22.43 11.68 45.56 2.59
6973 8726 0.250166 TGACGAGCCCGATCGATCTA 60.250 55.000 22.43 0.00 45.56 1.98
6974 8727 1.101635 TTGACGAGCCCGATCGATCT 61.102 55.000 22.43 12.72 45.56 2.75
6975 8728 0.935366 GTTGACGAGCCCGATCGATC 60.935 60.000 18.66 15.68 45.56 3.69
6976 8729 1.065928 GTTGACGAGCCCGATCGAT 59.934 57.895 18.66 0.00 45.56 3.59
6977 8730 1.663379 ATGTTGACGAGCCCGATCGA 61.663 55.000 18.66 0.00 45.56 3.59
6979 8732 1.369625 AAATGTTGACGAGCCCGATC 58.630 50.000 0.00 0.00 39.50 3.69
6980 8733 1.821216 AAAATGTTGACGAGCCCGAT 58.179 45.000 0.00 0.00 39.50 4.18
6981 8734 1.600023 AAAAATGTTGACGAGCCCGA 58.400 45.000 0.00 0.00 39.50 5.14
7010 8763 4.441495 GCAGTAATGAAAAGGGGTAATGCC 60.441 45.833 0.00 0.00 31.47 4.40
7011 8764 4.159506 TGCAGTAATGAAAAGGGGTAATGC 59.840 41.667 0.00 0.00 36.56 3.56
7012 8765 5.913137 TGCAGTAATGAAAAGGGGTAATG 57.087 39.130 0.00 0.00 0.00 1.90
7013 8766 5.777732 TGTTGCAGTAATGAAAAGGGGTAAT 59.222 36.000 0.00 0.00 0.00 1.89
7014 8767 5.141182 TGTTGCAGTAATGAAAAGGGGTAA 58.859 37.500 0.00 0.00 0.00 2.85
7015 8768 4.730966 TGTTGCAGTAATGAAAAGGGGTA 58.269 39.130 0.00 0.00 0.00 3.69
7016 8769 3.571590 TGTTGCAGTAATGAAAAGGGGT 58.428 40.909 0.00 0.00 0.00 4.95
7017 8770 4.806640 ATGTTGCAGTAATGAAAAGGGG 57.193 40.909 0.00 0.00 0.00 4.79
7018 8771 5.799936 CGTTATGTTGCAGTAATGAAAAGGG 59.200 40.000 0.00 0.00 0.00 3.95
7019 8772 6.607689 TCGTTATGTTGCAGTAATGAAAAGG 58.392 36.000 0.00 0.00 0.00 3.11
7020 8773 8.500837 TTTCGTTATGTTGCAGTAATGAAAAG 57.499 30.769 21.21 4.00 40.27 2.27
7021 8774 8.858003 TTTTCGTTATGTTGCAGTAATGAAAA 57.142 26.923 25.36 25.36 44.83 2.29
7023 8776 9.549509 GTATTTTCGTTATGTTGCAGTAATGAA 57.450 29.630 14.25 14.25 35.27 2.57
7024 8777 8.722394 TGTATTTTCGTTATGTTGCAGTAATGA 58.278 29.630 0.00 6.46 0.00 2.57
7025 8778 8.888332 TGTATTTTCGTTATGTTGCAGTAATG 57.112 30.769 0.00 0.00 0.00 1.90
7026 8779 9.337091 GTTGTATTTTCGTTATGTTGCAGTAAT 57.663 29.630 0.00 0.00 0.00 1.89
7027 8780 8.343366 TGTTGTATTTTCGTTATGTTGCAGTAA 58.657 29.630 0.00 0.00 0.00 2.24
7028 8781 7.862648 TGTTGTATTTTCGTTATGTTGCAGTA 58.137 30.769 0.00 0.00 0.00 2.74
7029 8782 6.730175 TGTTGTATTTTCGTTATGTTGCAGT 58.270 32.000 0.00 0.00 0.00 4.40
7030 8783 6.855914 ACTGTTGTATTTTCGTTATGTTGCAG 59.144 34.615 0.00 0.00 0.00 4.41
7031 8784 6.730175 ACTGTTGTATTTTCGTTATGTTGCA 58.270 32.000 0.00 0.00 0.00 4.08
7032 8785 6.304683 GGACTGTTGTATTTTCGTTATGTTGC 59.695 38.462 0.00 0.00 0.00 4.17
7033 8786 7.356540 TGGACTGTTGTATTTTCGTTATGTTG 58.643 34.615 0.00 0.00 0.00 3.33
7034 8787 7.499321 TGGACTGTTGTATTTTCGTTATGTT 57.501 32.000 0.00 0.00 0.00 2.71
7035 8788 7.499321 TTGGACTGTTGTATTTTCGTTATGT 57.501 32.000 0.00 0.00 0.00 2.29
7036 8789 8.286800 TCTTTGGACTGTTGTATTTTCGTTATG 58.713 33.333 0.00 0.00 0.00 1.90
7037 8790 8.385898 TCTTTGGACTGTTGTATTTTCGTTAT 57.614 30.769 0.00 0.00 0.00 1.89
7038 8791 7.789273 TCTTTGGACTGTTGTATTTTCGTTA 57.211 32.000 0.00 0.00 0.00 3.18
7039 8792 6.687081 TCTTTGGACTGTTGTATTTTCGTT 57.313 33.333 0.00 0.00 0.00 3.85
7040 8793 6.687081 TTCTTTGGACTGTTGTATTTTCGT 57.313 33.333 0.00 0.00 0.00 3.85
7041 8794 6.636850 CCTTTCTTTGGACTGTTGTATTTTCG 59.363 38.462 0.00 0.00 0.00 3.46
7042 8795 7.712797 TCCTTTCTTTGGACTGTTGTATTTTC 58.287 34.615 0.00 0.00 0.00 2.29
7043 8796 7.654022 TCCTTTCTTTGGACTGTTGTATTTT 57.346 32.000 0.00 0.00 0.00 1.82
7055 8808 3.052490 TCCCCTTTTGTCCTTTCTTTGGA 60.052 43.478 0.00 0.00 0.00 3.53
7056 8809 3.304829 TCCCCTTTTGTCCTTTCTTTGG 58.695 45.455 0.00 0.00 0.00 3.28
7057 8810 4.740634 GCTTCCCCTTTTGTCCTTTCTTTG 60.741 45.833 0.00 0.00 0.00 2.77
7058 8811 3.388024 GCTTCCCCTTTTGTCCTTTCTTT 59.612 43.478 0.00 0.00 0.00 2.52
7059 8812 2.965831 GCTTCCCCTTTTGTCCTTTCTT 59.034 45.455 0.00 0.00 0.00 2.52
7060 8813 2.598565 GCTTCCCCTTTTGTCCTTTCT 58.401 47.619 0.00 0.00 0.00 2.52
7061 8814 1.269723 CGCTTCCCCTTTTGTCCTTTC 59.730 52.381 0.00 0.00 0.00 2.62
7062 8815 1.133606 TCGCTTCCCCTTTTGTCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
7063 8816 0.476771 TCGCTTCCCCTTTTGTCCTT 59.523 50.000 0.00 0.00 0.00 3.36
7064 8817 0.036875 CTCGCTTCCCCTTTTGTCCT 59.963 55.000 0.00 0.00 0.00 3.85
7065 8818 0.250770 ACTCGCTTCCCCTTTTGTCC 60.251 55.000 0.00 0.00 0.00 4.02
7066 8819 1.157585 GACTCGCTTCCCCTTTTGTC 58.842 55.000 0.00 0.00 0.00 3.18
7067 8820 0.250770 GGACTCGCTTCCCCTTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
7068 8821 0.250727 TGGACTCGCTTCCCCTTTTG 60.251 55.000 0.16 0.00 34.33 2.44
7069 8822 0.476771 TTGGACTCGCTTCCCCTTTT 59.523 50.000 0.16 0.00 34.33 2.27
7070 8823 0.250770 GTTGGACTCGCTTCCCCTTT 60.251 55.000 0.16 0.00 34.33 3.11
7071 8824 1.375326 GTTGGACTCGCTTCCCCTT 59.625 57.895 0.16 0.00 34.33 3.95
7072 8825 3.069778 GTTGGACTCGCTTCCCCT 58.930 61.111 0.16 0.00 34.33 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.