Multiple sequence alignment - TraesCS3D01G164900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G164900 chr3D 100.000 6306 0 0 1 6306 136420327 136414022 0.000000e+00 11646.0
1 TraesCS3D01G164900 chr3D 81.553 721 100 21 3940 4639 136405504 136404796 1.190000e-156 564.0
2 TraesCS3D01G164900 chr3D 84.772 394 59 1 2725 3117 136406642 136406249 1.650000e-105 394.0
3 TraesCS3D01G164900 chr3B 95.343 3264 130 17 2339 5592 195101592 195098341 0.000000e+00 5166.0
4 TraesCS3D01G164900 chr3B 84.254 1321 88 46 240 1472 195103879 195102591 0.000000e+00 1177.0
5 TraesCS3D01G164900 chr3B 92.840 810 38 6 1562 2352 195102586 195101778 0.000000e+00 1157.0
6 TraesCS3D01G164900 chr3B 81.187 792 108 26 3875 4639 194761940 194761163 3.250000e-167 599.0
7 TraesCS3D01G164900 chr3B 85.922 412 53 4 2725 3134 194763301 194762893 9.710000e-118 435.0
8 TraesCS3D01G164900 chr3B 85.098 255 15 9 1 232 198547058 198546804 8.170000e-59 239.0
9 TraesCS3D01G164900 chr3B 80.769 208 36 4 6101 6306 325872058 325872263 6.540000e-35 159.0
10 TraesCS3D01G164900 chr3B 87.097 62 7 1 4845 4905 194760912 194760851 1.130000e-07 69.4
11 TraesCS3D01G164900 chr3A 91.403 3094 176 40 2617 5687 154075215 154072189 0.000000e+00 4157.0
12 TraesCS3D01G164900 chr3A 86.897 1534 98 54 1 1472 154077690 154076198 0.000000e+00 1624.0
13 TraesCS3D01G164900 chr3A 88.803 902 49 21 1555 2420 154076200 154075315 0.000000e+00 1059.0
14 TraesCS3D01G164900 chr3A 86.751 634 68 5 5673 6306 154042294 154041677 0.000000e+00 691.0
15 TraesCS3D01G164900 chr3A 80.803 797 114 24 3869 4639 154034978 154034195 7.040000e-164 588.0
16 TraesCS3D01G164900 chr3A 84.772 394 59 1 2725 3117 154036236 154035843 1.650000e-105 394.0
17 TraesCS3D01G164900 chr3A 88.136 59 6 1 4845 4902 154033945 154033887 1.130000e-07 69.4
18 TraesCS3D01G164900 chr7A 82.212 208 33 4 6101 6306 284525341 284525546 6.500000e-40 176.0
19 TraesCS3D01G164900 chr7A 80.693 202 35 4 6107 6306 65514654 65514455 3.040000e-33 154.0
20 TraesCS3D01G164900 chr7B 81.188 202 34 4 6107 6306 191675869 191675670 6.540000e-35 159.0
21 TraesCS3D01G164900 chr7D 95.918 98 3 1 1470 1567 242790578 242790674 2.350000e-34 158.0
22 TraesCS3D01G164900 chr7D 96.629 89 2 1 1469 1557 568370089 568370002 5.090000e-31 147.0
23 TraesCS3D01G164900 chr5B 80.288 208 37 4 6101 6306 294075940 294076145 3.040000e-33 154.0
24 TraesCS3D01G164900 chr1B 80.288 208 37 4 6101 6306 36009458 36009663 3.040000e-33 154.0
25 TraesCS3D01G164900 chr4A 96.739 92 1 2 1470 1560 674557906 674557816 1.090000e-32 152.0
26 TraesCS3D01G164900 chr5A 97.701 87 2 0 1467 1553 309680174 309680260 3.940000e-32 150.0
27 TraesCS3D01G164900 chr2D 97.701 87 2 0 1467 1553 61023797 61023711 3.940000e-32 150.0
28 TraesCS3D01G164900 chr6B 79.808 208 38 4 6101 6306 703946283 703946488 1.420000e-31 148.0
29 TraesCS3D01G164900 chr4B 80.198 202 36 4 6107 6306 488148038 488147839 1.420000e-31 148.0
30 TraesCS3D01G164900 chr5D 93.137 102 4 3 1469 1569 485753374 485753473 5.090000e-31 147.0
31 TraesCS3D01G164900 chr4D 95.652 92 2 2 1470 1560 32014344 32014434 5.090000e-31 147.0
32 TraesCS3D01G164900 chr4D 95.652 92 3 1 1469 1560 35614802 35614712 5.090000e-31 147.0
33 TraesCS3D01G164900 chr1A 92.079 101 6 2 1466 1565 22882700 22882601 2.370000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G164900 chr3D 136414022 136420327 6305 True 11646.000000 11646 100.000000 1 6306 1 chr3D.!!$R1 6305
1 TraesCS3D01G164900 chr3D 136404796 136406642 1846 True 479.000000 564 83.162500 2725 4639 2 chr3D.!!$R2 1914
2 TraesCS3D01G164900 chr3B 195098341 195103879 5538 True 2500.000000 5166 90.812333 240 5592 3 chr3B.!!$R3 5352
3 TraesCS3D01G164900 chr3B 194760851 194763301 2450 True 367.800000 599 84.735333 2725 4905 3 chr3B.!!$R2 2180
4 TraesCS3D01G164900 chr3A 154072189 154077690 5501 True 2280.000000 4157 89.034333 1 5687 3 chr3A.!!$R3 5686
5 TraesCS3D01G164900 chr3A 154041677 154042294 617 True 691.000000 691 86.751000 5673 6306 1 chr3A.!!$R1 633
6 TraesCS3D01G164900 chr3A 154033887 154036236 2349 True 350.466667 588 84.570333 2725 4902 3 chr3A.!!$R2 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.035820 CTGCCTTTGCCATTGCCATT 60.036 50.000 0.00 0.00 36.33 3.16 F
625 674 0.107017 AAGGGTTCTGATGATGCGGG 60.107 55.000 0.00 0.00 0.00 6.13 F
743 819 0.620556 ATTGAGATTGGAGTGCCGGT 59.379 50.000 1.90 0.00 36.79 5.28 F
1592 1705 0.038435 CCGCAAATGCCACATTGTGA 60.038 50.000 18.33 0.00 38.91 3.58 F
2012 2140 0.767375 ATGTTCCATATGCGCCCTCT 59.233 50.000 4.18 0.00 0.00 3.69 F
2744 3133 1.001406 GTGCTGCTCCACACTCTACTT 59.999 52.381 0.00 0.00 35.80 2.24 F
3009 3399 0.771127 TTCTGTTAGGCCCAACTGCT 59.229 50.000 15.31 0.00 0.00 4.24 F
3108 3498 2.024941 TGCAGAGAGATCTACCTGGTCA 60.025 50.000 19.52 10.86 0.00 4.02 F
4561 5591 2.568623 ATGGTGTCTTTGGTGGTCTC 57.431 50.000 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1108 0.036732 TGCCTACTCCAAACAGCTGG 59.963 55.000 19.93 0.00 37.87 4.85 R
1538 1651 0.042131 TGTACCTCCCTCCGTTCCAT 59.958 55.000 0.00 0.00 0.00 3.41 R
2295 2458 1.093159 CTGTGATTTCCTCAGGCTGC 58.907 55.000 10.34 0.00 33.51 5.25 R
2677 3066 1.126113 CGACGTATGCTGTCACCAAAC 59.874 52.381 0.00 0.00 36.11 2.93 R
2929 3318 1.732259 GTCTTTGCATAGTGGTGGTCG 59.268 52.381 4.00 0.00 0.00 4.79 R
4591 5622 2.159841 CGTGTGAGCAATGTTCTAACCG 60.160 50.000 0.00 0.00 0.00 4.44 R
4986 6093 4.016444 TGAATTCAGCGCCCTAAAGAAAT 58.984 39.130 2.29 0.00 0.00 2.17 R
5033 6141 2.097825 GAGGGTCTCAAAATGCTGCAT 58.902 47.619 9.81 9.81 0.00 3.96 R
6095 7206 0.033601 TGTTCAAGGGGTTGCTGTGT 60.034 50.000 0.00 0.00 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.604593 AGTCGCTGCCTTTGCCATT 60.605 52.632 0.00 0.00 36.33 3.16
69 70 0.035820 CTGCCTTTGCCATTGCCATT 60.036 50.000 0.00 0.00 36.33 3.16
75 76 0.328592 TTGCCATTGCCATTGCCATT 59.671 45.000 0.00 0.00 36.33 3.16
76 77 1.201424 TGCCATTGCCATTGCCATTA 58.799 45.000 0.00 0.00 36.33 1.90
78 79 1.139455 GCCATTGCCATTGCCATTACT 59.861 47.619 0.00 0.00 36.33 2.24
79 80 2.804212 GCCATTGCCATTGCCATTACTC 60.804 50.000 0.00 0.00 36.33 2.59
80 81 2.544277 CCATTGCCATTGCCATTACTCG 60.544 50.000 0.00 0.00 36.33 4.18
81 82 0.455410 TTGCCATTGCCATTACTCGC 59.545 50.000 0.00 0.00 36.33 5.03
82 83 1.360192 GCCATTGCCATTACTCGCC 59.640 57.895 0.00 0.00 0.00 5.54
83 84 1.648720 CCATTGCCATTACTCGCCG 59.351 57.895 0.00 0.00 0.00 6.46
84 85 1.009675 CATTGCCATTACTCGCCGC 60.010 57.895 0.00 0.00 0.00 6.53
85 86 2.534019 ATTGCCATTACTCGCCGCG 61.534 57.895 6.39 6.39 0.00 6.46
86 87 2.916502 ATTGCCATTACTCGCCGCGA 62.917 55.000 15.90 15.90 0.00 5.87
90 91 2.050351 ATTACTCGCCGCGATCCG 60.050 61.111 17.22 7.47 34.61 4.18
110 129 0.539051 CTCCCAGAACGAGCAGGATT 59.461 55.000 0.00 0.00 0.00 3.01
204 223 0.879090 GAACGTGCCGGGAAAAATCT 59.121 50.000 2.18 0.00 0.00 2.40
512 559 2.512485 TCCGCTACGTTTCTTGTTGA 57.488 45.000 0.00 0.00 0.00 3.18
566 614 3.482786 CGCTGATCTTTCGTTTCCTTTG 58.517 45.455 0.00 0.00 0.00 2.77
571 619 2.370349 TCTTTCGTTTCCTTTGTGGCA 58.630 42.857 0.00 0.00 35.26 4.92
587 635 1.025041 GGCAATCGTGGGATCTTTCC 58.975 55.000 0.00 0.00 41.77 3.13
595 644 3.010420 CGTGGGATCTTTCCTTTCCTTC 58.990 50.000 0.00 0.00 42.20 3.46
607 656 1.466950 CTTTCCTTCGCCGCATTGTAA 59.533 47.619 0.00 0.00 0.00 2.41
625 674 0.107017 AAGGGTTCTGATGATGCGGG 60.107 55.000 0.00 0.00 0.00 6.13
626 675 0.982852 AGGGTTCTGATGATGCGGGA 60.983 55.000 0.00 0.00 0.00 5.14
643 692 1.501582 GGAATACTCCTGCTCCTGGT 58.498 55.000 0.00 0.00 38.88 4.00
644 693 1.840635 GGAATACTCCTGCTCCTGGTT 59.159 52.381 0.00 0.00 38.88 3.67
648 697 1.197430 ACTCCTGCTCCTGGTTCCTG 61.197 60.000 0.00 0.00 0.00 3.86
649 698 0.906756 CTCCTGCTCCTGGTTCCTGA 60.907 60.000 0.00 0.00 0.00 3.86
652 701 2.266055 GCTCCTGGTTCCTGACGG 59.734 66.667 0.00 0.00 0.00 4.79
670 719 1.514553 GCCTTGCCTGCATCCTTTC 59.485 57.895 0.00 0.00 0.00 2.62
674 723 2.301009 CCTTGCCTGCATCCTTTCTTTT 59.699 45.455 0.00 0.00 0.00 2.27
701 777 3.563261 CCATTCATGGGTTTGTGGTCCTA 60.563 47.826 0.00 0.00 44.31 2.94
712 788 2.230664 TGGTCCTACCATGGCATCC 58.769 57.895 13.04 8.28 44.79 3.51
714 790 1.062488 GGTCCTACCATGGCATCCCT 61.062 60.000 13.04 0.00 38.42 4.20
733 809 3.315470 CCCTCATGCACTGATTGAGATTG 59.685 47.826 14.45 0.23 39.36 2.67
739 815 2.097142 GCACTGATTGAGATTGGAGTGC 59.903 50.000 0.00 0.00 46.66 4.40
740 816 2.681848 CACTGATTGAGATTGGAGTGCC 59.318 50.000 0.00 0.00 0.00 5.01
743 819 0.620556 ATTGAGATTGGAGTGCCGGT 59.379 50.000 1.90 0.00 36.79 5.28
766 842 3.334463 GCCGATGAGCCCGATTTC 58.666 61.111 0.00 0.00 0.00 2.17
768 844 0.815615 GCCGATGAGCCCGATTTCTT 60.816 55.000 0.00 0.00 0.00 2.52
769 845 1.221414 CCGATGAGCCCGATTTCTTC 58.779 55.000 0.00 0.00 0.00 2.87
770 846 1.202580 CCGATGAGCCCGATTTCTTCT 60.203 52.381 0.00 0.00 0.00 2.85
771 847 2.555199 CGATGAGCCCGATTTCTTCTT 58.445 47.619 0.00 0.00 0.00 2.52
772 848 2.541762 CGATGAGCCCGATTTCTTCTTC 59.458 50.000 0.00 0.00 0.00 2.87
773 849 3.739519 CGATGAGCCCGATTTCTTCTTCT 60.740 47.826 0.00 0.00 0.00 2.85
779 855 4.827284 AGCCCGATTTCTTCTTCTGAAAAA 59.173 37.500 0.00 0.00 37.05 1.94
782 858 5.473504 CCCGATTTCTTCTTCTGAAAAAGGA 59.526 40.000 3.80 0.00 36.78 3.36
783 859 6.016276 CCCGATTTCTTCTTCTGAAAAAGGAA 60.016 38.462 0.00 0.00 36.78 3.36
784 860 7.080724 CCGATTTCTTCTTCTGAAAAAGGAAG 58.919 38.462 3.76 6.96 39.94 3.46
785 861 7.041098 CCGATTTCTTCTTCTGAAAAAGGAAGA 60.041 37.037 12.93 12.93 43.89 2.87
801 877 2.494073 GGAAGAAGAAAGAGCTCCTCGA 59.506 50.000 10.93 0.00 35.36 4.04
838 914 7.605449 TCTCCCAAGATTTTGAGCTTAATTTG 58.395 34.615 0.00 0.00 36.36 2.32
840 916 7.153985 TCCCAAGATTTTGAGCTTAATTTGTG 58.846 34.615 0.00 0.00 36.36 3.33
843 919 8.829612 CCAAGATTTTGAGCTTAATTTGTGTTT 58.170 29.630 0.00 0.00 36.36 2.83
856 935 9.296400 CTTAATTTGTGTTTTTCTTTTCTCCGA 57.704 29.630 0.00 0.00 0.00 4.55
858 937 7.698836 ATTTGTGTTTTTCTTTTCTCCGATG 57.301 32.000 0.00 0.00 0.00 3.84
862 941 4.024387 TGTTTTTCTTTTCTCCGATGGTCG 60.024 41.667 0.00 0.00 40.07 4.79
866 945 4.524316 TCTTTTCTCCGATGGTCGTTAA 57.476 40.909 0.00 0.00 38.40 2.01
873 952 1.411246 CCGATGGTCGTTAATCCTGGA 59.589 52.381 0.00 0.00 38.40 3.86
892 971 6.058183 CCTGGAGAGGAAATGGTTTATACTG 58.942 44.000 0.00 0.00 42.93 2.74
903 982 9.783256 GAAATGGTTTATACTGTGAATGTTACC 57.217 33.333 0.00 0.00 0.00 2.85
921 1000 7.222000 TGTTACCATGTTTATTCACCTTTCC 57.778 36.000 0.00 0.00 0.00 3.13
941 1020 2.995258 CCAGCAATTGGTTTCAAATCCG 59.005 45.455 7.57 0.00 42.41 4.18
942 1021 3.554752 CCAGCAATTGGTTTCAAATCCGT 60.555 43.478 7.57 0.00 42.41 4.69
946 1031 4.376146 CAATTGGTTTCAAATCCGTTGGT 58.624 39.130 0.00 0.00 37.85 3.67
988 1076 1.418334 TTTTGTGTGGGGTGGATTGG 58.582 50.000 0.00 0.00 0.00 3.16
1020 1108 1.597742 TGGTTCTGAACAAGCTGCTC 58.402 50.000 21.01 3.00 0.00 4.26
1146 1235 1.673920 TCGATTCACATGGTCGATCGA 59.326 47.619 15.15 15.15 39.22 3.59
1163 1252 6.409185 GTCGATCGAGCTTTGTTCATTTAATG 59.591 38.462 20.09 0.00 0.00 1.90
1197 1297 9.574516 AAGAGAATAACCTAGTTTGTTCAATGT 57.425 29.630 11.18 0.00 0.00 2.71
1259 1359 7.067494 AGCAACTCTGGTATGAATATGTTTTCC 59.933 37.037 0.00 0.00 0.00 3.13
1350 1463 4.991153 TGCTCTGTGGTCTAGATAGTTG 57.009 45.455 0.00 0.00 0.00 3.16
1378 1491 4.019141 AGGATGGTATGGTTGGACGTTTAA 60.019 41.667 0.00 0.00 0.00 1.52
1477 1590 9.796180 TCTAAGTTGATATCTTACTACTCCCTC 57.204 37.037 3.98 0.00 0.00 4.30
1478 1591 7.842887 AAGTTGATATCTTACTACTCCCTCC 57.157 40.000 3.98 0.00 0.00 4.30
1479 1592 6.005198 AGTTGATATCTTACTACTCCCTCCG 58.995 44.000 3.98 0.00 0.00 4.63
1480 1593 5.579753 TGATATCTTACTACTCCCTCCGT 57.420 43.478 3.98 0.00 0.00 4.69
1481 1594 5.950023 TGATATCTTACTACTCCCTCCGTT 58.050 41.667 3.98 0.00 0.00 4.44
1482 1595 6.002704 TGATATCTTACTACTCCCTCCGTTC 58.997 44.000 3.98 0.00 0.00 3.95
1483 1596 3.010200 TCTTACTACTCCCTCCGTTCC 57.990 52.381 0.00 0.00 0.00 3.62
1484 1597 2.309755 TCTTACTACTCCCTCCGTTCCA 59.690 50.000 0.00 0.00 0.00 3.53
1485 1598 3.053095 TCTTACTACTCCCTCCGTTCCAT 60.053 47.826 0.00 0.00 0.00 3.41
1486 1599 4.166725 TCTTACTACTCCCTCCGTTCCATA 59.833 45.833 0.00 0.00 0.00 2.74
1487 1600 3.614568 ACTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
1488 1601 3.924922 ACTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
1489 1602 5.070823 ACTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
1490 1603 4.831710 ACTACTCCCTCCGTTCCATATTAC 59.168 45.833 0.00 0.00 0.00 1.89
1491 1604 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
1492 1605 4.296056 ACTCCCTCCGTTCCATATTACTT 58.704 43.478 0.00 0.00 0.00 2.24
1493 1606 4.101119 ACTCCCTCCGTTCCATATTACTTG 59.899 45.833 0.00 0.00 0.00 3.16
1494 1607 4.035112 TCCCTCCGTTCCATATTACTTGT 58.965 43.478 0.00 0.00 0.00 3.16
1495 1608 4.100498 TCCCTCCGTTCCATATTACTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
1496 1609 4.049186 CCTCCGTTCCATATTACTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
1497 1610 3.450578 TCCGTTCCATATTACTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
1498 1611 3.131577 TCCGTTCCATATTACTTGTCGCT 59.868 43.478 0.00 0.00 0.00 4.93
1499 1612 3.245284 CCGTTCCATATTACTTGTCGCTG 59.755 47.826 0.00 0.00 0.00 5.18
1500 1613 4.109766 CGTTCCATATTACTTGTCGCTGA 58.890 43.478 0.00 0.00 0.00 4.26
1501 1614 4.745125 CGTTCCATATTACTTGTCGCTGAT 59.255 41.667 0.00 0.00 0.00 2.90
1502 1615 5.234329 CGTTCCATATTACTTGTCGCTGATT 59.766 40.000 0.00 0.00 0.00 2.57
1503 1616 6.238103 CGTTCCATATTACTTGTCGCTGATTT 60.238 38.462 0.00 0.00 0.00 2.17
1504 1617 7.042992 CGTTCCATATTACTTGTCGCTGATTTA 60.043 37.037 0.00 0.00 0.00 1.40
1505 1618 7.946655 TCCATATTACTTGTCGCTGATTTAG 57.053 36.000 0.00 0.00 0.00 1.85
1506 1619 7.497595 TCCATATTACTTGTCGCTGATTTAGT 58.502 34.615 0.00 0.00 0.00 2.24
1507 1620 8.635328 TCCATATTACTTGTCGCTGATTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
1508 1621 8.700644 CCATATTACTTGTCGCTGATTTAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
1509 1622 9.244799 CATATTACTTGTCGCTGATTTAGTACA 57.755 33.333 0.00 0.00 0.00 2.90
1510 1623 9.811995 ATATTACTTGTCGCTGATTTAGTACAA 57.188 29.630 0.00 0.00 34.99 2.41
1511 1624 5.840940 ACTTGTCGCTGATTTAGTACAAC 57.159 39.130 0.00 0.00 33.64 3.32
1512 1625 5.539048 ACTTGTCGCTGATTTAGTACAACT 58.461 37.500 0.00 0.00 33.64 3.16
1513 1626 5.989777 ACTTGTCGCTGATTTAGTACAACTT 59.010 36.000 0.00 0.00 33.64 2.66
1514 1627 6.482308 ACTTGTCGCTGATTTAGTACAACTTT 59.518 34.615 0.00 0.00 33.64 2.66
1515 1628 7.654520 ACTTGTCGCTGATTTAGTACAACTTTA 59.345 33.333 0.00 0.00 33.64 1.85
1516 1629 8.542497 TTGTCGCTGATTTAGTACAACTTTAT 57.458 30.769 0.00 0.00 32.84 1.40
1517 1630 9.642327 TTGTCGCTGATTTAGTACAACTTTATA 57.358 29.630 0.00 0.00 32.84 0.98
1518 1631 9.079833 TGTCGCTGATTTAGTACAACTTTATAC 57.920 33.333 0.00 0.00 0.00 1.47
1519 1632 9.298774 GTCGCTGATTTAGTACAACTTTATACT 57.701 33.333 0.00 0.00 35.76 2.12
1530 1643 9.298774 AGTACAACTTTATACTAAATCAGCGAC 57.701 33.333 0.00 0.00 29.70 5.19
1531 1644 9.079833 GTACAACTTTATACTAAATCAGCGACA 57.920 33.333 0.00 0.00 0.00 4.35
1532 1645 8.542497 ACAACTTTATACTAAATCAGCGACAA 57.458 30.769 0.00 0.00 0.00 3.18
1533 1646 8.656849 ACAACTTTATACTAAATCAGCGACAAG 58.343 33.333 0.00 0.00 0.00 3.16
1534 1647 8.656849 CAACTTTATACTAAATCAGCGACAAGT 58.343 33.333 0.00 0.00 0.00 3.16
1535 1648 9.865321 AACTTTATACTAAATCAGCGACAAGTA 57.135 29.630 0.00 0.00 0.00 2.24
1536 1649 9.865321 ACTTTATACTAAATCAGCGACAAGTAA 57.135 29.630 0.00 0.00 0.00 2.24
1541 1654 7.715265 ACTAAATCAGCGACAAGTAATATGG 57.285 36.000 0.00 0.00 0.00 2.74
1542 1655 7.497595 ACTAAATCAGCGACAAGTAATATGGA 58.502 34.615 0.00 0.00 0.00 3.41
1543 1656 7.985184 ACTAAATCAGCGACAAGTAATATGGAA 59.015 33.333 0.00 0.00 0.00 3.53
1544 1657 6.604735 AATCAGCGACAAGTAATATGGAAC 57.395 37.500 0.00 0.00 0.00 3.62
1545 1658 4.109766 TCAGCGACAAGTAATATGGAACG 58.890 43.478 0.00 0.00 0.00 3.95
1546 1659 3.245284 CAGCGACAAGTAATATGGAACGG 59.755 47.826 0.00 0.00 0.00 4.44
1547 1660 3.131577 AGCGACAAGTAATATGGAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
1548 1661 3.489785 GCGACAAGTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
1549 1662 4.049186 CGACAAGTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
1550 1663 4.377897 GACAAGTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
1551 1664 4.035112 ACAAGTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
1552 1665 4.101119 ACAAGTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
1553 1666 3.240302 AGTAATATGGAACGGAGGGAGG 58.760 50.000 0.00 0.00 0.00 4.30
1592 1705 0.038435 CCGCAAATGCCACATTGTGA 60.038 50.000 18.33 0.00 38.91 3.58
1614 1727 2.898612 TGTGGGACATGCATTTTCACAT 59.101 40.909 12.19 0.00 44.52 3.21
1680 1795 7.989947 ACTAGAGTTTGGTTATGGAGGAATA 57.010 36.000 0.00 0.00 0.00 1.75
1799 1924 2.147958 TGGTTAGACGTGAAATGGCAC 58.852 47.619 0.00 0.00 27.92 5.01
1915 2043 7.722795 TCGTCAATGTTCTTCTAACAAATGA 57.277 32.000 0.00 0.00 33.42 2.57
2009 2137 1.680735 TGAAATGTTCCATATGCGCCC 59.319 47.619 4.18 0.00 0.00 6.13
2012 2140 0.767375 ATGTTCCATATGCGCCCTCT 59.233 50.000 4.18 0.00 0.00 3.69
2019 2160 2.234661 CCATATGCGCCCTCTGATTAGA 59.765 50.000 4.18 0.00 0.00 2.10
2021 2162 4.100035 CCATATGCGCCCTCTGATTAGATA 59.900 45.833 4.18 0.00 31.21 1.98
2076 2218 3.950397 TGACACTTTCAGTTGGTTGAGT 58.050 40.909 0.00 0.00 0.00 3.41
2077 2219 5.092554 TGACACTTTCAGTTGGTTGAGTA 57.907 39.130 0.00 0.00 0.00 2.59
2078 2220 4.873827 TGACACTTTCAGTTGGTTGAGTAC 59.126 41.667 0.00 0.00 0.00 2.73
2079 2221 5.099042 ACACTTTCAGTTGGTTGAGTACT 57.901 39.130 0.00 0.00 0.00 2.73
2080 2222 5.116882 ACACTTTCAGTTGGTTGAGTACTC 58.883 41.667 16.32 16.32 0.00 2.59
2081 2223 5.116180 CACTTTCAGTTGGTTGAGTACTCA 58.884 41.667 21.74 21.74 37.91 3.41
2082 2224 5.006746 CACTTTCAGTTGGTTGAGTACTCAC 59.993 44.000 25.13 18.42 39.66 3.51
2123 2272 3.797039 TGAAATGGATCTAGGAGTTGCG 58.203 45.455 0.00 0.00 0.00 4.85
2420 2782 7.591426 CACAAAAGTTAACATGGAAACTAGCTC 59.409 37.037 13.43 0.00 34.91 4.09
2423 2785 2.472695 AACATGGAAACTAGCTCGCA 57.527 45.000 0.00 0.00 0.00 5.10
2487 2849 7.040494 GGTAACTGGACTTACTAGATTGAACC 58.960 42.308 0.00 0.00 0.00 3.62
2488 2850 6.681729 AACTGGACTTACTAGATTGAACCA 57.318 37.500 0.00 0.00 0.00 3.67
2493 2855 7.179966 TGGACTTACTAGATTGAACCAGTAGA 58.820 38.462 0.00 0.00 0.00 2.59
2667 3056 7.821846 CCATTCTATATCTCTGGCCTAAACTTC 59.178 40.741 3.32 0.00 0.00 3.01
2677 3066 6.582636 TCTGGCCTAAACTTCTATGTACATG 58.417 40.000 18.81 8.56 0.00 3.21
2686 3075 7.435068 AACTTCTATGTACATGTTTGGTGAC 57.565 36.000 18.81 0.00 0.00 3.67
2697 3086 1.126113 GTTTGGTGACAGCATACGTCG 59.874 52.381 8.39 0.00 44.54 5.12
2744 3133 1.001406 GTGCTGCTCCACACTCTACTT 59.999 52.381 0.00 0.00 35.80 2.24
2762 3151 7.921745 ACTCTACTTTTAATATCCTTGCGAGTC 59.078 37.037 0.00 0.00 0.00 3.36
2855 3244 6.612306 TGTTCGAGTAATATCTCATCGATGG 58.388 40.000 24.61 15.28 41.51 3.51
2877 3266 3.659183 AAAGGAAGGACATGGATCTGG 57.341 47.619 0.00 0.00 0.00 3.86
2905 3294 5.939883 TGAGGATCACAAGTCATTTAACCAG 59.060 40.000 0.00 0.00 42.56 4.00
2929 3318 7.805071 CAGTTTGATGTTGTTCAAGATTACTCC 59.195 37.037 0.00 0.00 36.97 3.85
3009 3399 0.771127 TTCTGTTAGGCCCAACTGCT 59.229 50.000 15.31 0.00 0.00 4.24
3108 3498 2.024941 TGCAGAGAGATCTACCTGGTCA 60.025 50.000 19.52 10.86 0.00 4.02
3227 3776 3.327172 TGATTGTACGGGTGGGAGTTTTA 59.673 43.478 0.00 0.00 0.00 1.52
3317 3868 4.707105 TCATGATCCATTTCTGTGCGTAT 58.293 39.130 0.00 0.00 0.00 3.06
3410 3961 7.122204 TCAATCATTCATCATTCTCTGCACTTT 59.878 33.333 0.00 0.00 0.00 2.66
3492 4043 8.297470 TGTATTAACTTCAAGGTAGTATCCGT 57.703 34.615 0.00 0.00 0.00 4.69
3493 4044 9.407380 TGTATTAACTTCAAGGTAGTATCCGTA 57.593 33.333 0.00 0.00 0.00 4.02
3516 4067 5.725362 ACATTCTACCTTGAGTAGCTGAAC 58.275 41.667 0.00 0.00 46.98 3.18
3517 4068 5.482175 ACATTCTACCTTGAGTAGCTGAACT 59.518 40.000 0.00 0.00 46.98 3.01
3569 4122 5.518848 ACTTGACACAATTCATGCTCAAA 57.481 34.783 0.00 0.00 31.84 2.69
4163 5178 4.497291 TTTTACCACTTCACACTGGTCT 57.503 40.909 0.00 0.00 40.14 3.85
4232 5247 4.286297 AGTTCATTTCCATTCGAGTGGA 57.714 40.909 24.40 24.40 46.28 4.02
4473 5503 2.672195 GCATTTGTCCTAACCTGCAAGC 60.672 50.000 0.00 0.00 0.00 4.01
4493 5523 7.094248 TGCAAGCTGATGTTGTATTTACTTCAT 60.094 33.333 0.00 0.00 31.74 2.57
4508 5538 3.956744 ACTTCATAAGCCTCCAAAGGTC 58.043 45.455 0.00 0.00 45.34 3.85
4561 5591 2.568623 ATGGTGTCTTTGGTGGTCTC 57.431 50.000 0.00 0.00 0.00 3.36
4587 5618 6.455360 TGCTGTGAAAGAAGATTTGAGTTT 57.545 33.333 0.00 0.00 0.00 2.66
4597 5628 7.190920 AGAAGATTTGAGTTTTCACGGTTAG 57.809 36.000 0.00 0.00 31.71 2.34
4741 5777 6.432783 TCTTACAGAGAAGAGAGAACTTGGAG 59.567 42.308 0.00 0.00 31.72 3.86
4906 6012 6.980397 ACTCCAAGTTTTGCTCATTTTAGTTG 59.020 34.615 0.00 0.00 0.00 3.16
4943 6049 7.548097 AGTGTACACCTCTTATGAACAGTATG 58.452 38.462 22.28 0.00 46.00 2.39
4944 6050 6.255887 GTGTACACCTCTTATGAACAGTATGC 59.744 42.308 15.42 0.00 42.53 3.14
4986 6093 7.351952 ACATACCTCTATGAAGTGTACACCTA 58.648 38.462 22.28 9.45 34.77 3.08
4999 6106 4.569564 GTGTACACCTATTTCTTTAGGGCG 59.430 45.833 15.42 0.00 42.68 6.13
5011 6118 3.378112 TCTTTAGGGCGCTGAATTCATTG 59.622 43.478 14.51 5.67 0.00 2.82
5033 6141 9.291664 CATTGTTACAGTTCGTTTTTCCTTTTA 57.708 29.630 0.00 0.00 0.00 1.52
5142 6250 0.311165 GTCGTCGGATCATCGGTCAT 59.689 55.000 0.00 0.00 0.00 3.06
5191 6299 3.195396 AGTGCTTTGCAGGTTTCAAGAAA 59.805 39.130 0.00 0.00 40.08 2.52
5197 6305 3.157087 TGCAGGTTTCAAGAAATCCCTC 58.843 45.455 2.34 0.65 31.96 4.30
5203 6311 3.348647 TTCAAGAAATCCCTCGATGCA 57.651 42.857 0.00 0.00 0.00 3.96
5207 6315 1.833630 AGAAATCCCTCGATGCACAGA 59.166 47.619 0.00 0.00 0.00 3.41
5247 6355 1.469251 GCTATCCGCGAACAGACTTCA 60.469 52.381 8.23 0.00 0.00 3.02
5273 6381 3.367910 GCTACAACTGAAGAGAGAGGTGG 60.368 52.174 0.00 0.00 30.60 4.61
5274 6382 2.964209 ACAACTGAAGAGAGAGGTGGA 58.036 47.619 0.00 0.00 30.60 4.02
5421 6529 7.611855 CCTTGATTTCTATGTCTACCCACTTTT 59.388 37.037 0.00 0.00 0.00 2.27
5437 6545 4.118410 CACTTTTGTGGTTTTAGCATGCA 58.882 39.130 21.98 2.77 46.16 3.96
5542 6650 1.733912 TGATGAGCAGCACGAATTGAC 59.266 47.619 0.00 0.00 0.00 3.18
5543 6651 2.005451 GATGAGCAGCACGAATTGACT 58.995 47.619 0.00 0.00 0.00 3.41
5544 6652 1.882912 TGAGCAGCACGAATTGACTT 58.117 45.000 0.00 0.00 0.00 3.01
5550 6658 3.423206 GCAGCACGAATTGACTTCTTTTG 59.577 43.478 0.00 0.00 0.00 2.44
5577 6688 3.755905 TGCAACTCAAGACAGTTTGTGAA 59.244 39.130 0.00 0.00 34.17 3.18
5587 6698 8.353684 TCAAGACAGTTTGTGAAGTTTTAAACA 58.646 29.630 10.60 0.00 35.93 2.83
5615 6726 5.181690 TGTTCATTTGGTGAGTTACAAGC 57.818 39.130 0.00 0.00 38.29 4.01
5616 6727 4.642437 TGTTCATTTGGTGAGTTACAAGCA 59.358 37.500 0.00 0.00 38.29 3.91
5618 6729 3.249799 TCATTTGGTGAGTTACAAGCACG 59.750 43.478 0.00 0.00 33.48 5.34
5619 6730 0.941542 TTGGTGAGTTACAAGCACGC 59.058 50.000 0.00 0.00 33.48 5.34
5637 6748 4.856487 GCACGCTGAATGTAGCATTTTTAA 59.144 37.500 0.00 0.00 43.87 1.52
5648 6759 6.517605 TGTAGCATTTTTAAAAGTTGACCCC 58.482 36.000 13.97 1.11 0.00 4.95
5659 6770 1.279271 AGTTGACCCCAAAGGATCTCG 59.721 52.381 0.00 0.00 39.89 4.04
5660 6771 1.278127 GTTGACCCCAAAGGATCTCGA 59.722 52.381 0.00 0.00 39.89 4.04
5703 6814 4.773149 AGTTGGCCGGTTAATTAATGGAAA 59.227 37.500 18.57 11.27 0.00 3.13
5705 6816 5.941555 TGGCCGGTTAATTAATGGAAAAT 57.058 34.783 18.57 0.00 0.00 1.82
5730 6841 1.917303 CAAAAACTGTCACAACACGCC 59.083 47.619 0.00 0.00 0.00 5.68
5732 6843 0.678366 AAACTGTCACAACACGCCCA 60.678 50.000 0.00 0.00 0.00 5.36
5738 6849 1.107114 TCACAACACGCCCACAAAAT 58.893 45.000 0.00 0.00 0.00 1.82
5750 6861 2.094675 CCACAAAATCTAGGCACCCTG 58.905 52.381 0.00 0.00 34.61 4.45
5753 6864 0.033109 AAAATCTAGGCACCCTGGGC 60.033 55.000 14.08 0.00 34.61 5.36
5759 6870 2.808761 TAGGCACCCTGGGCGAACTA 62.809 60.000 14.08 7.06 38.57 2.24
5761 6872 2.955881 GCACCCTGGGCGAACTAGT 61.956 63.158 14.08 0.00 0.00 2.57
5769 6880 3.841642 GGCGAACTAGTAGCCTACG 57.158 57.895 26.23 13.57 46.83 3.51
5777 6888 2.097142 ACTAGTAGCCTACGCAAGAACG 59.903 50.000 0.00 0.00 43.62 3.95
5778 6889 0.458025 AGTAGCCTACGCAAGAACGC 60.458 55.000 0.00 0.00 43.62 4.84
5783 6894 1.218875 CCTACGCAAGAACGCACACA 61.219 55.000 0.00 0.00 43.62 3.72
5784 6895 0.111266 CTACGCAAGAACGCACACAC 60.111 55.000 0.00 0.00 43.62 3.82
5785 6896 1.813212 TACGCAAGAACGCACACACG 61.813 55.000 0.00 0.00 43.62 4.49
5786 6897 2.722188 GCAAGAACGCACACACGC 60.722 61.111 0.00 0.00 36.19 5.34
5787 6898 2.052237 CAAGAACGCACACACGCC 60.052 61.111 0.00 0.00 36.19 5.68
5788 6899 2.203015 AAGAACGCACACACGCCT 60.203 55.556 0.00 0.00 36.19 5.52
5790 6901 1.772063 AAGAACGCACACACGCCTTC 61.772 55.000 0.00 0.00 36.19 3.46
5792 6903 4.578898 ACGCACACACGCCTTCGA 62.579 61.111 0.00 0.00 39.41 3.71
5793 6904 3.334751 CGCACACACGCCTTCGAA 61.335 61.111 0.00 0.00 39.41 3.71
5801 6912 2.286833 CACACGCCTTCGAAGAGAAAAA 59.713 45.455 26.61 0.00 38.57 1.94
5804 6915 1.525619 CGCCTTCGAAGAGAAAAACGT 59.474 47.619 26.61 0.00 38.57 3.99
5806 6917 2.409879 GCCTTCGAAGAGAAAAACGTCG 60.410 50.000 26.61 6.04 38.57 5.12
5830 6941 2.522923 TTGCAACCCGGTGGCATT 60.523 55.556 20.73 0.00 42.47 3.56
5843 6954 1.470098 GTGGCATTGTCATCACACCTC 59.530 52.381 0.00 0.00 29.76 3.85
5849 6960 0.678950 TGTCATCACACCTCTGCGAA 59.321 50.000 0.00 0.00 0.00 4.70
5858 6969 2.568612 CTCTGCGAAGGCGACTCA 59.431 61.111 0.00 0.00 42.68 3.41
5863 6974 1.080434 GCGAAGGCGACTCAGACTT 60.080 57.895 0.00 0.00 43.26 3.01
5875 6986 3.010420 ACTCAGACTTCATCATCGACGA 58.990 45.455 0.00 0.00 0.00 4.20
5905 7016 2.888111 TTGCACCGCAAACAAGCA 59.112 50.000 0.00 0.00 45.96 3.91
5933 7044 1.226128 GCGCTGATCGAAGCCAAAC 60.226 57.895 0.00 0.00 40.23 2.93
5940 7051 2.548057 TGATCGAAGCCAAACAGTCAAC 59.452 45.455 0.00 0.00 0.00 3.18
5941 7052 2.325583 TCGAAGCCAAACAGTCAACT 57.674 45.000 0.00 0.00 0.00 3.16
5944 7055 2.286418 CGAAGCCAAACAGTCAACTGAC 60.286 50.000 16.71 3.09 46.59 3.51
5959 7070 2.137528 TGACGACCAGGCAGTTCCA 61.138 57.895 0.00 0.00 37.29 3.53
5971 7082 1.668751 GCAGTTCCAACTTTGTCGACA 59.331 47.619 15.76 15.76 37.08 4.35
6001 7112 1.282157 AGAGAAAAGCGTTGGGCCTAT 59.718 47.619 4.53 0.00 45.17 2.57
6002 7113 1.401905 GAGAAAAGCGTTGGGCCTATG 59.598 52.381 4.53 3.43 45.17 2.23
6003 7114 0.179137 GAAAAGCGTTGGGCCTATGC 60.179 55.000 22.30 22.30 45.17 3.14
6025 7136 3.564027 CCAGCGCCGAAATCGACC 61.564 66.667 2.29 0.00 43.02 4.79
6042 7153 1.374947 CCACCCACCTCGTGTCATT 59.625 57.895 0.00 0.00 0.00 2.57
6054 7165 0.385974 GTGTCATTGTCACCGCAAGC 60.386 55.000 3.04 0.00 0.00 4.01
6065 7176 2.654079 CCGCAAGCTCCTCCTCAGT 61.654 63.158 0.00 0.00 0.00 3.41
6069 7180 1.484038 CAAGCTCCTCCTCAGTAGCT 58.516 55.000 0.00 0.00 46.96 3.32
6072 7183 1.032014 GCTCCTCCTCAGTAGCTCTG 58.968 60.000 0.00 0.00 44.85 3.35
6095 7206 7.231519 TCTGACTTTCATAGAGACAAAGTGAGA 59.768 37.037 8.33 8.33 43.62 3.27
6100 7211 6.018589 TCATAGAGACAAAGTGAGACACAG 57.981 41.667 4.75 0.00 36.74 3.66
6118 7229 0.818040 AGCAACCCCTTGAACACGAC 60.818 55.000 0.00 0.00 0.00 4.34
6126 7237 1.419374 CTTGAACACGACGGAAGAGG 58.581 55.000 0.00 0.00 0.00 3.69
6146 7257 0.603569 CCGACTACCAGAGCACAACT 59.396 55.000 0.00 0.00 0.00 3.16
6148 7259 1.000163 CGACTACCAGAGCACAACTGT 60.000 52.381 0.00 0.00 34.04 3.55
6151 7262 3.988517 GACTACCAGAGCACAACTGTAAC 59.011 47.826 0.00 0.00 34.04 2.50
6195 7306 0.249447 GTTGCCACAAACAGGAAGCC 60.249 55.000 0.00 0.00 0.00 4.35
6199 7310 1.526575 CCACAAACAGGAAGCCGCAT 61.527 55.000 0.00 0.00 0.00 4.73
6214 7325 1.331756 CCGCATAAACCTCTGCATCAC 59.668 52.381 0.00 0.00 38.30 3.06
6219 7330 0.036010 AAACCTCTGCATCACCGGAG 60.036 55.000 9.46 0.00 37.85 4.63
6272 7383 3.365265 CCCCTGGAGCACGCAAAC 61.365 66.667 0.00 0.00 0.00 2.93
6280 7391 3.545124 AGCACGCAAACGGGATCCA 62.545 57.895 15.23 0.00 35.61 3.41
6286 7397 1.000717 CGCAAACGGGATCCAAAACTT 60.001 47.619 15.23 0.00 34.97 2.66
6292 7403 4.316205 ACGGGATCCAAAACTTTTCAAC 57.684 40.909 15.23 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.729965 CTACGCTCCCTGCCAGCTG 62.730 68.421 6.78 6.78 38.78 4.24
34 35 2.172372 CAGCGACTGATCTGCTGCC 61.172 63.158 13.88 0.00 41.83 4.85
63 64 1.383456 GGCGAGTAATGGCAATGGCA 61.383 55.000 12.96 12.96 43.71 4.92
69 70 3.439513 ATCGCGGCGAGTAATGGCA 62.440 57.895 29.64 4.02 39.91 4.92
84 85 2.278857 CGTTCTGGGAGCGGATCG 60.279 66.667 0.00 0.00 32.91 3.69
85 86 1.066587 CTCGTTCTGGGAGCGGATC 59.933 63.158 4.23 0.00 36.93 3.36
86 87 3.082579 GCTCGTTCTGGGAGCGGAT 62.083 63.158 4.23 0.00 46.38 4.18
91 92 0.539051 AATCCTGCTCGTTCTGGGAG 59.461 55.000 0.00 0.00 34.62 4.30
92 93 0.984230 AAATCCTGCTCGTTCTGGGA 59.016 50.000 0.00 0.00 0.00 4.37
94 95 1.339055 TGGAAATCCTGCTCGTTCTGG 60.339 52.381 0.44 0.00 36.82 3.86
97 116 1.087501 GGTGGAAATCCTGCTCGTTC 58.912 55.000 0.44 0.00 36.82 3.95
110 129 3.228017 TGCTGTCGTCCGGTGGAA 61.228 61.111 0.00 0.00 31.38 3.53
204 223 0.743345 TGATCGAGACGGCGAGAAGA 60.743 55.000 16.62 8.18 44.26 2.87
232 251 1.064463 ACACCCAGATGGCACCTATTG 60.064 52.381 0.00 0.00 37.83 1.90
233 252 1.064463 CACACCCAGATGGCACCTATT 60.064 52.381 0.00 0.00 37.83 1.73
234 253 0.548031 CACACCCAGATGGCACCTAT 59.452 55.000 0.00 0.00 37.83 2.57
235 254 1.561769 CCACACCCAGATGGCACCTA 61.562 60.000 0.00 0.00 37.83 3.08
266 285 3.771160 CAGGGGAGGGACGAACGG 61.771 72.222 0.00 0.00 0.00 4.44
444 485 2.203788 TCGTCCTTCCTGGTGCCT 60.204 61.111 0.00 0.00 37.07 4.75
512 559 1.910580 AACGATCCCGGATTGCAGGT 61.911 55.000 13.96 0.00 40.78 4.00
566 614 1.401905 GAAAGATCCCACGATTGCCAC 59.598 52.381 0.00 0.00 0.00 5.01
587 635 1.083489 TACAATGCGGCGAAGGAAAG 58.917 50.000 12.98 0.00 0.00 2.62
595 644 1.024579 AGAACCCTTACAATGCGGCG 61.025 55.000 0.51 0.51 0.00 6.46
607 656 0.982852 TCCCGCATCATCAGAACCCT 60.983 55.000 0.00 0.00 0.00 4.34
625 674 2.158885 GGAACCAGGAGCAGGAGTATTC 60.159 54.545 0.00 0.00 0.00 1.75
626 675 1.840635 GGAACCAGGAGCAGGAGTATT 59.159 52.381 0.00 0.00 0.00 1.89
639 688 1.672356 CAAGGCCGTCAGGAACCAG 60.672 63.158 0.00 0.00 41.02 4.00
652 701 0.969409 AGAAAGGATGCAGGCAAGGC 60.969 55.000 0.00 0.00 0.00 4.35
683 739 1.353022 GGTAGGACCACAAACCCATGA 59.647 52.381 0.00 0.00 38.42 3.07
712 788 3.315470 CCAATCTCAATCAGTGCATGAGG 59.685 47.826 18.93 8.16 42.53 3.86
714 790 4.196971 CTCCAATCTCAATCAGTGCATGA 58.803 43.478 0.00 0.00 43.70 3.07
725 801 0.321564 CACCGGCACTCCAATCTCAA 60.322 55.000 0.00 0.00 0.00 3.02
759 835 6.560253 TCCTTTTTCAGAAGAAGAAATCGG 57.440 37.500 13.83 0.00 35.17 4.18
760 836 7.865707 TCTTCCTTTTTCAGAAGAAGAAATCG 58.134 34.615 13.83 0.00 44.13 3.34
769 845 7.013178 AGCTCTTTCTTCTTCCTTTTTCAGAAG 59.987 37.037 2.32 2.32 43.38 2.85
770 846 6.830838 AGCTCTTTCTTCTTCCTTTTTCAGAA 59.169 34.615 0.00 0.00 0.00 3.02
771 847 6.360618 AGCTCTTTCTTCTTCCTTTTTCAGA 58.639 36.000 0.00 0.00 0.00 3.27
772 848 6.293900 GGAGCTCTTTCTTCTTCCTTTTTCAG 60.294 42.308 14.64 0.00 0.00 3.02
773 849 5.532779 GGAGCTCTTTCTTCTTCCTTTTTCA 59.467 40.000 14.64 0.00 0.00 2.69
779 855 2.495669 CGAGGAGCTCTTTCTTCTTCCT 59.504 50.000 14.64 0.00 0.00 3.36
782 858 3.866883 CTCGAGGAGCTCTTTCTTCTT 57.133 47.619 14.64 0.00 0.00 2.52
801 877 2.512896 GGGAGAATCGCCATGGCT 59.487 61.111 33.07 16.32 43.06 4.75
816 892 6.930722 ACACAAATTAAGCTCAAAATCTTGGG 59.069 34.615 0.00 0.51 35.97 4.12
838 914 5.183014 ACCATCGGAGAAAAGAAAAACAC 57.817 39.130 0.00 0.00 43.58 3.32
840 916 4.024302 ACGACCATCGGAGAAAAGAAAAAC 60.024 41.667 2.97 0.00 45.59 2.43
843 919 3.396260 ACGACCATCGGAGAAAAGAAA 57.604 42.857 2.97 0.00 45.59 2.52
856 935 2.700897 CCTCTCCAGGATTAACGACCAT 59.299 50.000 0.00 0.00 43.65 3.55
858 937 2.385803 TCCTCTCCAGGATTAACGACC 58.614 52.381 0.00 0.00 44.75 4.79
873 952 8.109634 ACATTCACAGTATAAACCATTTCCTCT 58.890 33.333 0.00 0.00 0.00 3.69
903 982 5.389859 TGCTGGAAAGGTGAATAAACATG 57.610 39.130 0.00 0.00 0.00 3.21
921 1000 3.652274 ACGGATTTGAAACCAATTGCTG 58.348 40.909 0.00 0.00 0.00 4.41
933 1012 1.974265 TGAAGCACCAACGGATTTGA 58.026 45.000 0.00 0.00 37.39 2.69
934 1013 2.030007 ACATGAAGCACCAACGGATTTG 60.030 45.455 0.00 0.00 34.63 2.32
935 1014 2.238521 ACATGAAGCACCAACGGATTT 58.761 42.857 0.00 0.00 0.00 2.17
936 1015 1.909700 ACATGAAGCACCAACGGATT 58.090 45.000 0.00 0.00 0.00 3.01
937 1016 1.909700 AACATGAAGCACCAACGGAT 58.090 45.000 0.00 0.00 0.00 4.18
939 1018 2.507339 AAAACATGAAGCACCAACGG 57.493 45.000 0.00 0.00 0.00 4.44
967 1052 2.224257 CCAATCCACCCCACACAAAAAG 60.224 50.000 0.00 0.00 0.00 2.27
972 1060 0.178975 GTTCCAATCCACCCCACACA 60.179 55.000 0.00 0.00 0.00 3.72
973 1061 0.178975 TGTTCCAATCCACCCCACAC 60.179 55.000 0.00 0.00 0.00 3.82
988 1076 5.241506 TGTTCAGAACCATCCTTCAATGTTC 59.758 40.000 10.93 0.00 0.00 3.18
1020 1108 0.036732 TGCCTACTCCAAACAGCTGG 59.963 55.000 19.93 0.00 37.87 4.85
1146 1235 7.380536 TGAAGCATCATTAAATGAACAAAGCT 58.619 30.769 0.00 0.00 43.50 3.74
1163 1252 8.394121 CAAACTAGGTTATTCTCTTGAAGCATC 58.606 37.037 0.00 0.00 35.44 3.91
1181 1281 9.185192 GATGAGAAAAACATTGAACAAACTAGG 57.815 33.333 0.00 0.00 0.00 3.02
1197 1297 3.088532 CAACCCCATCGGATGAGAAAAA 58.911 45.455 19.30 0.00 36.51 1.94
1199 1299 1.681780 GCAACCCCATCGGATGAGAAA 60.682 52.381 19.30 0.00 36.51 2.52
1350 1463 4.642429 GTCCAACCATACCATCCTGATAC 58.358 47.826 0.00 0.00 0.00 2.24
1378 1491 6.201425 CACAAGCAAGACAAATTAGTGCAAAT 59.799 34.615 0.00 0.00 37.68 2.32
1469 1582 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
1470 1583 3.924922 AGTAATATGGAACGGAGGGAGT 58.075 45.455 0.00 0.00 0.00 3.85
1471 1584 4.101119 ACAAGTAATATGGAACGGAGGGAG 59.899 45.833 0.00 0.00 0.00 4.30
1472 1585 4.035112 ACAAGTAATATGGAACGGAGGGA 58.965 43.478 0.00 0.00 0.00 4.20
1473 1586 4.377897 GACAAGTAATATGGAACGGAGGG 58.622 47.826 0.00 0.00 0.00 4.30
1474 1587 4.049186 CGACAAGTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
1475 1588 3.489785 GCGACAAGTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
1476 1589 3.131577 AGCGACAAGTAATATGGAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
1477 1590 3.245284 CAGCGACAAGTAATATGGAACGG 59.755 47.826 0.00 0.00 0.00 4.44
1478 1591 4.109766 TCAGCGACAAGTAATATGGAACG 58.890 43.478 0.00 0.00 0.00 3.95
1479 1592 6.604735 AATCAGCGACAAGTAATATGGAAC 57.395 37.500 0.00 0.00 0.00 3.62
1480 1593 7.985184 ACTAAATCAGCGACAAGTAATATGGAA 59.015 33.333 0.00 0.00 0.00 3.53
1481 1594 7.497595 ACTAAATCAGCGACAAGTAATATGGA 58.502 34.615 0.00 0.00 0.00 3.41
1482 1595 7.715265 ACTAAATCAGCGACAAGTAATATGG 57.285 36.000 0.00 0.00 0.00 2.74
1483 1596 9.244799 TGTACTAAATCAGCGACAAGTAATATG 57.755 33.333 0.00 0.00 0.00 1.78
1484 1597 9.811995 TTGTACTAAATCAGCGACAAGTAATAT 57.188 29.630 0.00 0.00 31.65 1.28
1485 1598 9.079833 GTTGTACTAAATCAGCGACAAGTAATA 57.920 33.333 0.00 0.00 35.28 0.98
1486 1599 7.817962 AGTTGTACTAAATCAGCGACAAGTAAT 59.182 33.333 0.00 0.00 36.22 1.89
1487 1600 7.149973 AGTTGTACTAAATCAGCGACAAGTAA 58.850 34.615 0.00 0.00 36.22 2.24
1488 1601 6.684686 AGTTGTACTAAATCAGCGACAAGTA 58.315 36.000 0.00 0.00 36.22 2.24
1489 1602 5.539048 AGTTGTACTAAATCAGCGACAAGT 58.461 37.500 0.00 0.00 35.28 3.16
1490 1603 6.467723 AAGTTGTACTAAATCAGCGACAAG 57.532 37.500 0.00 0.00 35.28 3.16
1491 1604 6.854496 AAAGTTGTACTAAATCAGCGACAA 57.146 33.333 0.00 0.00 33.29 3.18
1492 1605 9.079833 GTATAAAGTTGTACTAAATCAGCGACA 57.920 33.333 0.00 0.00 0.00 4.35
1493 1606 9.298774 AGTATAAAGTTGTACTAAATCAGCGAC 57.701 33.333 0.00 0.00 34.01 5.19
1504 1617 9.298774 GTCGCTGATTTAGTATAAAGTTGTACT 57.701 33.333 5.87 5.87 38.43 2.73
1505 1618 9.079833 TGTCGCTGATTTAGTATAAAGTTGTAC 57.920 33.333 0.00 0.00 0.00 2.90
1506 1619 9.642327 TTGTCGCTGATTTAGTATAAAGTTGTA 57.358 29.630 0.00 0.00 0.00 2.41
1507 1620 8.542497 TTGTCGCTGATTTAGTATAAAGTTGT 57.458 30.769 0.00 0.00 0.00 3.32
1508 1621 8.656849 ACTTGTCGCTGATTTAGTATAAAGTTG 58.343 33.333 0.00 0.00 0.00 3.16
1509 1622 8.773404 ACTTGTCGCTGATTTAGTATAAAGTT 57.227 30.769 0.00 0.00 0.00 2.66
1510 1623 9.865321 TTACTTGTCGCTGATTTAGTATAAAGT 57.135 29.630 0.00 0.00 0.00 2.66
1515 1628 9.424319 CCATATTACTTGTCGCTGATTTAGTAT 57.576 33.333 0.00 0.00 0.00 2.12
1516 1629 8.635328 TCCATATTACTTGTCGCTGATTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
1517 1630 7.497595 TCCATATTACTTGTCGCTGATTTAGT 58.502 34.615 0.00 0.00 0.00 2.24
1518 1631 7.946655 TCCATATTACTTGTCGCTGATTTAG 57.053 36.000 0.00 0.00 0.00 1.85
1519 1632 7.042992 CGTTCCATATTACTTGTCGCTGATTTA 60.043 37.037 0.00 0.00 0.00 1.40
1520 1633 6.238103 CGTTCCATATTACTTGTCGCTGATTT 60.238 38.462 0.00 0.00 0.00 2.17
1521 1634 5.234329 CGTTCCATATTACTTGTCGCTGATT 59.766 40.000 0.00 0.00 0.00 2.57
1522 1635 4.745125 CGTTCCATATTACTTGTCGCTGAT 59.255 41.667 0.00 0.00 0.00 2.90
1523 1636 4.109766 CGTTCCATATTACTTGTCGCTGA 58.890 43.478 0.00 0.00 0.00 4.26
1524 1637 3.245284 CCGTTCCATATTACTTGTCGCTG 59.755 47.826 0.00 0.00 0.00 5.18
1525 1638 3.131577 TCCGTTCCATATTACTTGTCGCT 59.868 43.478 0.00 0.00 0.00 4.93
1526 1639 3.450578 TCCGTTCCATATTACTTGTCGC 58.549 45.455 0.00 0.00 0.00 5.19
1527 1640 4.049186 CCTCCGTTCCATATTACTTGTCG 58.951 47.826 0.00 0.00 0.00 4.35
1528 1641 4.100498 TCCCTCCGTTCCATATTACTTGTC 59.900 45.833 0.00 0.00 0.00 3.18
1529 1642 4.035112 TCCCTCCGTTCCATATTACTTGT 58.965 43.478 0.00 0.00 0.00 3.16
1530 1643 4.503296 CCTCCCTCCGTTCCATATTACTTG 60.503 50.000 0.00 0.00 0.00 3.16
1531 1644 3.646637 CCTCCCTCCGTTCCATATTACTT 59.353 47.826 0.00 0.00 0.00 2.24
1532 1645 3.240302 CCTCCCTCCGTTCCATATTACT 58.760 50.000 0.00 0.00 0.00 2.24
1533 1646 2.970640 ACCTCCCTCCGTTCCATATTAC 59.029 50.000 0.00 0.00 0.00 1.89
1534 1647 3.339713 ACCTCCCTCCGTTCCATATTA 57.660 47.619 0.00 0.00 0.00 0.98
1535 1648 2.191981 ACCTCCCTCCGTTCCATATT 57.808 50.000 0.00 0.00 0.00 1.28
1536 1649 2.090943 TGTACCTCCCTCCGTTCCATAT 60.091 50.000 0.00 0.00 0.00 1.78
1537 1650 1.288633 TGTACCTCCCTCCGTTCCATA 59.711 52.381 0.00 0.00 0.00 2.74
1538 1651 0.042131 TGTACCTCCCTCCGTTCCAT 59.958 55.000 0.00 0.00 0.00 3.41
1539 1652 0.042131 ATGTACCTCCCTCCGTTCCA 59.958 55.000 0.00 0.00 0.00 3.53
1540 1653 0.464452 CATGTACCTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
1541 1654 0.464452 CCATGTACCTCCCTCCGTTC 59.536 60.000 0.00 0.00 0.00 3.95
1542 1655 0.252558 ACCATGTACCTCCCTCCGTT 60.253 55.000 0.00 0.00 0.00 4.44
1543 1656 0.252558 AACCATGTACCTCCCTCCGT 60.253 55.000 0.00 0.00 0.00 4.69
1544 1657 1.784358 TAACCATGTACCTCCCTCCG 58.216 55.000 0.00 0.00 0.00 4.63
1545 1658 3.381335 TCTTAACCATGTACCTCCCTCC 58.619 50.000 0.00 0.00 0.00 4.30
1546 1659 4.099727 GTCTCTTAACCATGTACCTCCCTC 59.900 50.000 0.00 0.00 0.00 4.30
1547 1660 4.031611 GTCTCTTAACCATGTACCTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
1548 1661 3.773119 TGTCTCTTAACCATGTACCTCCC 59.227 47.826 0.00 0.00 0.00 4.30
1549 1662 4.677250 CGTGTCTCTTAACCATGTACCTCC 60.677 50.000 0.00 0.00 0.00 4.30
1550 1663 4.421948 CGTGTCTCTTAACCATGTACCTC 58.578 47.826 0.00 0.00 0.00 3.85
1551 1664 3.368116 GCGTGTCTCTTAACCATGTACCT 60.368 47.826 0.00 0.00 0.00 3.08
1552 1665 2.928116 GCGTGTCTCTTAACCATGTACC 59.072 50.000 0.00 0.00 0.00 3.34
1553 1666 2.928116 GGCGTGTCTCTTAACCATGTAC 59.072 50.000 0.00 0.00 0.00 2.90
1592 1705 2.898612 TGTGAAAATGCATGTCCCACAT 59.101 40.909 16.62 0.00 39.91 3.21
1614 1727 9.618890 CCAGGATATCATTCTTCTTACTTTTCA 57.381 33.333 4.83 0.00 0.00 2.69
1698 1813 3.010027 TGTTAAGATTCAGTCCCATGCCA 59.990 43.478 0.00 0.00 0.00 4.92
1799 1924 5.070180 ACCACAGAGAGACATGGATTCATAG 59.930 44.000 0.00 0.00 36.04 2.23
1915 2043 7.983484 GGACTTTCCTGCATAAAATGATTCATT 59.017 33.333 6.06 6.06 32.47 2.57
2021 2162 9.905713 TTTCAGATAACTGCTGATAAGGTTTAT 57.094 29.630 0.00 0.00 41.60 1.40
2079 2221 5.185249 CAGGGCTTACTTTACTCAGTAGTGA 59.815 44.000 0.00 0.00 36.36 3.41
2080 2222 5.185249 TCAGGGCTTACTTTACTCAGTAGTG 59.815 44.000 0.00 0.00 36.36 2.74
2081 2223 5.331069 TCAGGGCTTACTTTACTCAGTAGT 58.669 41.667 0.00 0.00 39.91 2.73
2082 2224 5.916661 TCAGGGCTTACTTTACTCAGTAG 57.083 43.478 0.00 0.00 30.77 2.57
2295 2458 1.093159 CTGTGATTTCCTCAGGCTGC 58.907 55.000 10.34 0.00 33.51 5.25
2487 2849 5.705441 TCTGTGGCAGGTTAAAAATCTACTG 59.295 40.000 0.00 0.00 31.51 2.74
2488 2850 5.876357 TCTGTGGCAGGTTAAAAATCTACT 58.124 37.500 0.00 0.00 31.51 2.57
2493 2855 5.079643 ACATCTCTGTGGCAGGTTAAAAAT 58.920 37.500 0.00 0.00 33.22 1.82
2667 3056 4.694982 TGCTGTCACCAAACATGTACATAG 59.305 41.667 8.32 5.94 0.00 2.23
2677 3066 1.126113 CGACGTATGCTGTCACCAAAC 59.874 52.381 0.00 0.00 36.11 2.93
2686 3075 3.883441 GTTGACTAACGACGTATGCTG 57.117 47.619 0.00 0.00 0.00 4.41
2697 3086 7.632721 TGAAATCCAGTAAAACGTTGACTAAC 58.367 34.615 13.98 3.86 0.00 2.34
2707 3096 4.798574 CAGCACCTGAAATCCAGTAAAAC 58.201 43.478 0.00 0.00 41.33 2.43
2710 3099 2.040278 AGCAGCACCTGAAATCCAGTAA 59.960 45.455 0.00 0.00 41.33 2.24
2744 3133 5.730550 ACTGTGACTCGCAAGGATATTAAA 58.269 37.500 0.00 0.00 38.47 1.52
2762 3151 3.623906 ACATGGATCCAAGAGACTGTG 57.376 47.619 23.35 14.28 0.00 3.66
2855 3244 4.164221 TCCAGATCCATGTCCTTCCTTTAC 59.836 45.833 0.00 0.00 0.00 2.01
2877 3266 7.970614 GGTTAAATGACTTGTGATCCTCATTTC 59.029 37.037 7.55 0.00 40.72 2.17
2905 3294 6.797033 CGGAGTAATCTTGAACAACATCAAAC 59.203 38.462 0.00 0.00 38.75 2.93
2929 3318 1.732259 GTCTTTGCATAGTGGTGGTCG 59.268 52.381 4.00 0.00 0.00 4.79
3009 3399 5.011738 CAGATAGGAGGCGGGAAATTAGTTA 59.988 44.000 0.00 0.00 0.00 2.24
3146 3536 6.486253 TGACATAGTCTGATCAAAACAAGC 57.514 37.500 9.80 0.00 33.15 4.01
3147 3537 9.903682 AAATTGACATAGTCTGATCAAAACAAG 57.096 29.630 9.80 3.06 34.88 3.16
3212 3761 3.322541 CCATTTTTAAAACTCCCACCCGT 59.677 43.478 0.00 0.00 0.00 5.28
3227 3776 3.390639 TGTGGGAATCAACAGCCATTTTT 59.609 39.130 0.00 0.00 0.00 1.94
3298 3847 4.135747 TCATACGCACAGAAATGGATCA 57.864 40.909 0.00 0.00 0.00 2.92
3299 3848 5.446709 CATTCATACGCACAGAAATGGATC 58.553 41.667 0.00 0.00 0.00 3.36
3300 3849 4.261322 GCATTCATACGCACAGAAATGGAT 60.261 41.667 0.00 0.00 0.00 3.41
3301 3850 3.065233 GCATTCATACGCACAGAAATGGA 59.935 43.478 0.00 0.00 0.00 3.41
3470 4021 8.297470 TGTACGGATACTACCTTGAAGTTAAT 57.703 34.615 0.00 0.00 32.00 1.40
3516 4067 6.563422 TGAACAACCATCAAAACTTTCAGAG 58.437 36.000 0.00 0.00 0.00 3.35
3517 4068 6.152661 ACTGAACAACCATCAAAACTTTCAGA 59.847 34.615 13.44 0.00 40.67 3.27
3685 4592 4.677182 AGAAACTGTATGAAAGGGCCAAT 58.323 39.130 6.18 0.00 0.00 3.16
4232 5247 4.142038 ACAAGTTTGGATTAAGCCGAAGT 58.858 39.130 12.83 13.14 36.69 3.01
4473 5503 9.113838 AGGCTTATGAAGTAAATACAACATCAG 57.886 33.333 0.00 0.00 0.00 2.90
4508 5538 6.994496 TGGCAAGAAATGAGGATTCTATACTG 59.006 38.462 0.00 0.00 36.14 2.74
4561 5591 5.048224 ACTCAAATCTTCTTTCACAGCATGG 60.048 40.000 0.00 0.00 43.62 3.66
4587 5618 3.496884 GTGAGCAATGTTCTAACCGTGAA 59.503 43.478 0.00 0.00 0.00 3.18
4591 5622 2.159841 CGTGTGAGCAATGTTCTAACCG 60.160 50.000 0.00 0.00 0.00 4.44
4906 6012 6.631962 AGAGGTGTACACTTCTTAATAGTGC 58.368 40.000 29.29 8.14 44.02 4.40
4943 6049 6.151144 AGGTATGTTCAACTTTCCATACAAGC 59.849 38.462 9.92 0.00 40.76 4.01
4944 6050 7.607991 AGAGGTATGTTCAACTTTCCATACAAG 59.392 37.037 9.92 0.00 40.76 3.16
4986 6093 4.016444 TGAATTCAGCGCCCTAAAGAAAT 58.984 39.130 2.29 0.00 0.00 2.17
4999 6106 5.689819 ACGAACTGTAACAATGAATTCAGC 58.310 37.500 14.54 0.97 0.00 4.26
5011 6118 7.432838 TGCATAAAAGGAAAAACGAACTGTAAC 59.567 33.333 0.00 0.00 0.00 2.50
5033 6141 2.097825 GAGGGTCTCAAAATGCTGCAT 58.902 47.619 9.81 9.81 0.00 3.96
5142 6250 1.306654 AGGTAAGTCCGGCCATCCA 60.307 57.895 2.24 0.00 41.99 3.41
5191 6299 0.463204 CAGTCTGTGCATCGAGGGAT 59.537 55.000 0.00 0.00 0.00 3.85
5197 6305 2.665537 GAGAAGTTCAGTCTGTGCATCG 59.334 50.000 5.50 0.00 0.00 3.84
5203 6311 0.952280 TCGCGAGAAGTTCAGTCTGT 59.048 50.000 3.71 0.00 37.03 3.41
5231 6339 1.014044 GCATGAAGTCTGTTCGCGGA 61.014 55.000 6.13 0.00 0.00 5.54
5247 6355 2.493675 TCTCTCTTCAGTTGTAGCGCAT 59.506 45.455 11.47 0.00 0.00 4.73
5273 6381 3.474600 ACATGGTCTTATCTGCAGCATC 58.525 45.455 9.47 0.00 0.00 3.91
5274 6382 3.136077 AGACATGGTCTTATCTGCAGCAT 59.864 43.478 9.47 6.37 40.28 3.79
5421 6529 2.315176 AGGTTGCATGCTAAAACCACA 58.685 42.857 29.71 3.14 44.81 4.17
5437 6545 5.076873 ACCAACATGTATTGCACTAAGGTT 58.923 37.500 0.00 0.00 0.00 3.50
5542 6650 4.095410 TGAGTTGCACACACAAAAGAAG 57.905 40.909 0.00 0.00 0.00 2.85
5543 6651 4.217334 TCTTGAGTTGCACACACAAAAGAA 59.783 37.500 10.93 0.18 35.78 2.52
5544 6652 3.755905 TCTTGAGTTGCACACACAAAAGA 59.244 39.130 10.93 6.76 35.78 2.52
5550 6658 2.009774 ACTGTCTTGAGTTGCACACAC 58.990 47.619 0.00 0.00 0.00 3.82
5605 6716 2.480419 ACATTCAGCGTGCTTGTAACTC 59.520 45.455 0.00 0.00 0.00 3.01
5615 6726 6.926280 TTTAAAAATGCTACATTCAGCGTG 57.074 33.333 0.00 0.00 44.88 5.34
5616 6727 7.145323 ACTTTTAAAAATGCTACATTCAGCGT 58.855 30.769 1.66 0.00 44.88 5.07
5618 6729 8.977505 TCAACTTTTAAAAATGCTACATTCAGC 58.022 29.630 1.66 0.00 42.15 4.26
5637 6748 3.767711 GAGATCCTTTGGGGTCAACTTT 58.232 45.455 0.00 0.00 44.96 2.66
5660 6771 9.914131 GCCAACTTTCTTCTTACTTAATGAATT 57.086 29.630 0.00 0.00 0.00 2.17
5679 6790 4.345854 TCCATTAATTAACCGGCCAACTT 58.654 39.130 0.00 0.00 0.00 2.66
5703 6814 4.404073 TGTTGTGACAGTTTTTGCCCTATT 59.596 37.500 0.00 0.00 0.00 1.73
5705 6816 3.129638 GTGTTGTGACAGTTTTTGCCCTA 59.870 43.478 0.00 0.00 36.20 3.53
5717 6828 0.960861 TTTGTGGGCGTGTTGTGACA 60.961 50.000 0.00 0.00 0.00 3.58
5730 6841 2.094675 CAGGGTGCCTAGATTTTGTGG 58.905 52.381 0.00 0.00 29.64 4.17
5732 6843 1.005924 CCCAGGGTGCCTAGATTTTGT 59.994 52.381 0.00 0.00 29.64 2.83
5738 6849 3.916438 TTCGCCCAGGGTGCCTAGA 62.916 63.158 15.13 0.00 32.51 2.43
5750 6861 0.310232 CGTAGGCTACTAGTTCGCCC 59.690 60.000 24.30 13.80 44.84 6.13
5753 6864 2.353889 TCTTGCGTAGGCTACTAGTTCG 59.646 50.000 21.51 9.12 40.82 3.95
5759 6870 0.458025 GCGTTCTTGCGTAGGCTACT 60.458 55.000 21.51 0.00 40.82 2.57
5761 6872 0.734942 GTGCGTTCTTGCGTAGGCTA 60.735 55.000 9.11 0.00 40.82 3.93
5766 6877 1.813212 CGTGTGTGCGTTCTTGCGTA 61.813 55.000 0.00 0.00 37.81 4.42
5769 6880 2.722188 GCGTGTGTGCGTTCTTGC 60.722 61.111 0.00 0.00 0.00 4.01
5777 6888 1.891060 CTCTTCGAAGGCGTGTGTGC 61.891 60.000 24.37 0.00 38.98 4.57
5778 6889 0.318699 TCTCTTCGAAGGCGTGTGTG 60.319 55.000 24.37 0.00 38.98 3.82
5783 6894 1.525619 CGTTTTTCTCTTCGAAGGCGT 59.474 47.619 24.37 0.00 38.98 5.68
5784 6895 1.525619 ACGTTTTTCTCTTCGAAGGCG 59.474 47.619 24.37 15.66 39.35 5.52
5785 6896 2.409879 CGACGTTTTTCTCTTCGAAGGC 60.410 50.000 24.37 0.00 32.21 4.35
5786 6897 2.793232 ACGACGTTTTTCTCTTCGAAGG 59.207 45.455 24.37 15.07 33.87 3.46
5787 6898 4.433382 AACGACGTTTTTCTCTTCGAAG 57.567 40.909 19.35 19.35 33.87 3.79
5788 6899 5.051508 CCTTAACGACGTTTTTCTCTTCGAA 60.052 40.000 19.71 0.00 33.87 3.71
5790 6901 4.207841 ACCTTAACGACGTTTTTCTCTTCG 59.792 41.667 19.71 0.00 35.80 3.79
5792 6903 5.728621 GCAACCTTAACGACGTTTTTCTCTT 60.729 40.000 19.71 0.88 0.00 2.85
5793 6904 4.260497 GCAACCTTAACGACGTTTTTCTCT 60.260 41.667 19.71 0.00 0.00 3.10
5801 6912 0.939419 GGTTGCAACCTTAACGACGT 59.061 50.000 36.26 0.00 45.75 4.34
5826 6937 1.131883 GCAGAGGTGTGATGACAATGC 59.868 52.381 0.00 0.00 32.49 3.56
5830 6941 0.678950 TTCGCAGAGGTGTGATGACA 59.321 50.000 0.00 0.00 42.79 3.58
5843 6954 1.803519 GTCTGAGTCGCCTTCGCAG 60.804 63.158 0.00 0.00 35.26 5.18
5849 6960 1.550327 TGATGAAGTCTGAGTCGCCT 58.450 50.000 0.00 0.00 0.00 5.52
5858 6969 2.092323 TGGTCGTCGATGATGAAGTCT 58.908 47.619 11.16 0.00 28.80 3.24
5863 6974 0.892063 TTGGTGGTCGTCGATGATGA 59.108 50.000 11.16 0.00 0.00 2.92
5875 6986 0.537371 GGTGCAAGCTAGTTGGTGGT 60.537 55.000 0.00 0.00 36.56 4.16
5900 7011 3.044059 GCGCAGGCCTTAGTGCTTG 62.044 63.158 18.75 3.76 40.94 4.01
5905 7016 1.144936 GATCAGCGCAGGCCTTAGT 59.855 57.895 11.47 0.00 41.24 2.24
5933 7044 0.946221 GCCTGGTCGTCAGTTGACTG 60.946 60.000 10.27 4.77 42.66 3.51
5940 7051 1.374758 GGAACTGCCTGGTCGTCAG 60.375 63.158 0.00 0.00 43.00 3.51
5941 7052 1.691195 TTGGAACTGCCTGGTCGTCA 61.691 55.000 0.00 0.00 37.63 4.35
5944 7055 0.535102 AAGTTGGAACTGCCTGGTCG 60.535 55.000 0.00 0.00 39.66 4.79
5955 7066 2.360844 TGCTTGTCGACAAAGTTGGAA 58.639 42.857 29.32 11.41 35.15 3.53
5957 7068 3.044986 CAATGCTTGTCGACAAAGTTGG 58.955 45.455 29.32 18.99 35.15 3.77
5959 7070 2.098934 TGCAATGCTTGTCGACAAAGTT 59.901 40.909 29.32 20.48 35.15 2.66
5971 7082 2.035066 ACGCTTTTCTCTTGCAATGCTT 59.965 40.909 6.82 0.00 0.00 3.91
5979 7090 0.039165 GGCCCAACGCTTTTCTCTTG 60.039 55.000 0.00 0.00 37.74 3.02
5981 7092 0.690762 TAGGCCCAACGCTTTTCTCT 59.309 50.000 0.00 0.00 37.74 3.10
6004 7115 3.929948 GATTTCGGCGCTGGCTCG 61.930 66.667 17.88 6.52 39.81 5.03
6005 7116 3.929948 CGATTTCGGCGCTGGCTC 61.930 66.667 17.88 9.72 39.81 4.70
6006 7117 4.451150 TCGATTTCGGCGCTGGCT 62.451 61.111 17.88 0.54 40.29 4.75
6007 7118 4.223964 GTCGATTTCGGCGCTGGC 62.224 66.667 17.88 2.84 40.29 4.85
6008 7119 3.564027 GGTCGATTTCGGCGCTGG 61.564 66.667 17.88 4.31 46.26 4.85
6009 7120 2.813474 TGGTCGATTTCGGCGCTG 60.813 61.111 10.86 10.86 46.26 5.18
6010 7121 2.813908 GTGGTCGATTTCGGCGCT 60.814 61.111 7.64 0.00 46.26 5.92
6011 7122 3.861263 GGTGGTCGATTTCGGCGC 61.861 66.667 0.00 0.00 46.26 6.53
6020 7131 3.299977 CACGAGGTGGGTGGTCGA 61.300 66.667 0.00 0.00 37.16 4.20
6025 7136 0.250295 ACAATGACACGAGGTGGGTG 60.250 55.000 0.42 0.00 37.94 4.61
6042 7153 2.343758 GAGGAGCTTGCGGTGACA 59.656 61.111 0.00 0.00 0.00 3.58
6065 7176 7.177568 ACTTTGTCTCTATGAAAGTCAGAGCTA 59.822 37.037 0.00 0.00 35.79 3.32
6069 7180 7.231519 TCTCACTTTGTCTCTATGAAAGTCAGA 59.768 37.037 0.00 0.00 35.31 3.27
6072 7183 7.115663 GTGTCTCACTTTGTCTCTATGAAAGTC 59.884 40.741 0.00 0.00 37.74 3.01
6095 7206 0.033601 TGTTCAAGGGGTTGCTGTGT 60.034 50.000 0.00 0.00 0.00 3.72
6100 7211 1.652563 GTCGTGTTCAAGGGGTTGC 59.347 57.895 0.00 0.00 0.00 4.17
6126 7237 1.014564 GTTGTGCTCTGGTAGTCGGC 61.015 60.000 0.00 0.00 0.00 5.54
6132 7243 2.038033 GGGTTACAGTTGTGCTCTGGTA 59.962 50.000 0.00 0.00 37.25 3.25
6146 7257 3.170717 CTTAGGTGGAGTCAGGGTTACA 58.829 50.000 0.00 0.00 0.00 2.41
6148 7259 2.185387 GCTTAGGTGGAGTCAGGGTTA 58.815 52.381 0.00 0.00 0.00 2.85
6151 7262 1.908483 GGCTTAGGTGGAGTCAGGG 59.092 63.158 0.00 0.00 0.00 4.45
6195 7306 1.331756 GGTGATGCAGAGGTTTATGCG 59.668 52.381 0.00 0.00 44.38 4.73
6199 7310 1.207089 CTCCGGTGATGCAGAGGTTTA 59.793 52.381 0.00 0.00 0.00 2.01
6245 7356 3.406595 CTCCAGGGGGCGGATGTTC 62.407 68.421 0.00 0.00 0.00 3.18
6254 7365 4.659172 TTTGCGTGCTCCAGGGGG 62.659 66.667 0.00 0.00 0.00 5.40
6272 7383 4.314740 TGTTGAAAAGTTTTGGATCCCG 57.685 40.909 9.90 0.00 0.00 5.14
6273 7384 5.696270 GTCATGTTGAAAAGTTTTGGATCCC 59.304 40.000 9.90 0.00 0.00 3.85
6280 7391 3.453424 GGGCGTCATGTTGAAAAGTTTT 58.547 40.909 0.00 0.00 0.00 2.43
6286 7397 1.403814 TTTGGGGCGTCATGTTGAAA 58.596 45.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.