Multiple sequence alignment - TraesCS3D01G164800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G164800 chr3D 100.000 6347 0 0 1 6347 136409320 136402974 0.000000e+00 11721.0
1 TraesCS3D01G164800 chr3D 81.553 721 100 21 3817 4525 136416388 136415689 1.190000e-156 564.0
2 TraesCS3D01G164800 chr3D 84.772 394 59 1 2679 3072 136417603 136417211 1.660000e-105 394.0
3 TraesCS3D01G164800 chr3D 93.617 47 2 1 3543 3589 136405550 136405505 1.140000e-07 69.4
4 TraesCS3D01G164800 chr3D 93.617 47 2 1 3771 3816 136405778 136405732 1.140000e-07 69.4
5 TraesCS3D01G164800 chr3B 95.188 1808 78 6 3818 5623 194761870 194760070 0.000000e+00 2848.0
6 TraesCS3D01G164800 chr3B 94.674 1258 52 9 2091 3340 194763886 194762636 0.000000e+00 1938.0
7 TraesCS3D01G164800 chr3B 89.083 1200 56 36 28 1178 194765814 194764641 0.000000e+00 1421.0
8 TraesCS3D01G164800 chr3B 95.396 782 20 7 1200 1978 194764652 194763884 0.000000e+00 1230.0
9 TraesCS3D01G164800 chr3B 88.534 689 28 12 5671 6347 194760065 194759416 0.000000e+00 787.0
10 TraesCS3D01G164800 chr3B 81.780 719 102 17 3817 4525 195099994 195099295 5.520000e-160 575.0
11 TraesCS3D01G164800 chr3B 92.128 343 25 1 3436 3778 194762218 194761878 3.440000e-132 483.0
12 TraesCS3D01G164800 chr3B 83.151 457 68 5 2618 3072 195101264 195100815 5.920000e-110 409.0
13 TraesCS3D01G164800 chr3B 95.968 124 5 0 1970 2093 725714307 725714430 1.080000e-47 202.0
14 TraesCS3D01G164800 chr3B 91.489 47 3 1 3771 3816 194762111 194762065 5.310000e-06 63.9
15 TraesCS3D01G164800 chr3A 91.757 1844 63 34 200 1978 154038633 154036814 0.000000e+00 2481.0
16 TraesCS3D01G164800 chr3A 94.045 1293 55 8 2091 3376 154036816 154035539 0.000000e+00 1941.0
17 TraesCS3D01G164800 chr3A 95.415 1156 50 2 3818 4972 154034902 154033749 0.000000e+00 1838.0
18 TraesCS3D01G164800 chr3A 91.994 662 35 7 4970 5623 154033590 154032939 0.000000e+00 913.0
19 TraesCS3D01G164800 chr3A 89.302 673 22 11 5689 6347 154032915 154032279 0.000000e+00 798.0
20 TraesCS3D01G164800 chr3A 92.612 379 25 3 3400 3778 154035285 154034910 5.600000e-150 542.0
21 TraesCS3D01G164800 chr3A 97.126 174 3 1 1 172 154038908 154038735 6.220000e-75 292.0
22 TraesCS3D01G164800 chr3A 91.489 47 3 1 3771 3816 154035142 154035096 5.310000e-06 63.9
23 TraesCS3D01G164800 chr2D 99.167 120 1 0 1976 2095 651336613 651336732 3.850000e-52 217.0
24 TraesCS3D01G164800 chr2D 76.415 212 46 4 6138 6347 498228526 498228317 1.870000e-20 111.0
25 TraesCS3D01G164800 chr7D 98.361 122 1 1 1971 2092 51413267 51413147 4.980000e-51 213.0
26 TraesCS3D01G164800 chr6D 98.347 121 2 0 1972 2092 304087848 304087968 4.980000e-51 213.0
27 TraesCS3D01G164800 chr7B 97.458 118 3 0 1976 2093 252178172 252178055 1.080000e-47 202.0
28 TraesCS3D01G164800 chr6B 95.968 124 5 0 1970 2093 130306168 130306045 1.080000e-47 202.0
29 TraesCS3D01G164800 chr6B 95.276 127 6 0 1976 2102 645481522 645481396 1.080000e-47 202.0
30 TraesCS3D01G164800 chr6B 94.495 109 4 1 636 744 662096792 662096898 3.940000e-37 167.0
31 TraesCS3D01G164800 chr1B 94.574 129 7 0 1972 2100 613245925 613246053 3.880000e-47 200.0
32 TraesCS3D01G164800 chr2B 93.130 131 8 1 1976 2105 444543985 444544115 2.340000e-44 191.0
33 TraesCS3D01G164800 chr1A 82.286 175 31 0 6125 6299 186213496 186213322 1.100000e-32 152.0
34 TraesCS3D01G164800 chr1D 81.714 175 32 0 6125 6299 127505029 127504855 5.130000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G164800 chr3D 136402974 136409320 6346 True 3953.266667 11721 95.744667 1 6347 3 chr3D.!!$R1 6346
1 TraesCS3D01G164800 chr3D 136415689 136417603 1914 True 479.000000 564 83.162500 2679 4525 2 chr3D.!!$R2 1846
2 TraesCS3D01G164800 chr3B 194759416 194765814 6398 True 1252.985714 2848 92.356000 28 6347 7 chr3B.!!$R1 6319
3 TraesCS3D01G164800 chr3B 195099295 195101264 1969 True 492.000000 575 82.465500 2618 4525 2 chr3B.!!$R2 1907
4 TraesCS3D01G164800 chr3A 154032279 154038908 6629 True 1108.612500 2481 92.967500 1 6347 8 chr3A.!!$R1 6346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 609 0.105964 CGATCTGGGGAGGAGAAGGA 60.106 60.0 0.00 0.00 0.00 3.36 F
1997 2159 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
2088 2250 0.324552 TGTATTTCCGGACGGAGGGA 60.325 55.0 13.64 4.95 46.06 4.20 F
2089 2251 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.0 13.64 0.00 46.06 4.30 F
3991 4852 0.457035 GCGATGTCCACCGGTAAGTA 59.543 55.0 6.87 0.00 0.00 2.24 F
4504 5375 0.469917 ATTGCTGATACCCGTCCTGG 59.530 55.0 0.00 0.00 37.55 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1975 2137 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
3450 4308 1.537202 GCCAAGAAATGCAGAGAACGT 59.463 47.619 0.00 0.00 0.00 3.99 R
3991 4852 2.056906 GAGGTGGGTGTGAAGTGCCT 62.057 60.000 0.00 0.00 0.00 4.75 R
4010 4872 6.455647 GTGATAAAGTTGAAAAAGAAGGGGG 58.544 40.000 0.00 0.00 0.00 5.40 R
5060 6093 0.109597 GGTCTCAAAATGCTGCACCG 60.110 55.000 3.57 0.00 0.00 4.94 R
5605 6646 0.242017 GCTGGTCATCAAAGTGGCAC 59.758 55.000 10.29 10.29 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
378 482 2.277404 GCTCCTCCGACTCCCTCT 59.723 66.667 0.00 0.00 0.00 3.69
405 513 0.823460 CTCTGCTCTGTTCTCCTCCC 59.177 60.000 0.00 0.00 0.00 4.30
440 548 2.408050 TGCTCGCTTCTTTCTTCAGTC 58.592 47.619 0.00 0.00 0.00 3.51
447 555 0.608640 TCTTTCTTCAGTCCCTCGCC 59.391 55.000 0.00 0.00 0.00 5.54
456 564 0.325296 AGTCCCTCGCCATGGTTCTA 60.325 55.000 14.67 0.00 0.00 2.10
492 605 1.758514 GTGCGATCTGGGGAGGAGA 60.759 63.158 0.00 0.00 0.00 3.71
496 609 0.105964 CGATCTGGGGAGGAGAAGGA 60.106 60.000 0.00 0.00 0.00 3.36
497 610 1.715785 GATCTGGGGAGGAGAAGGAG 58.284 60.000 0.00 0.00 0.00 3.69
499 612 0.855855 TCTGGGGAGGAGAAGGAGGA 60.856 60.000 0.00 0.00 0.00 3.71
500 613 0.398381 CTGGGGAGGAGAAGGAGGAG 60.398 65.000 0.00 0.00 0.00 3.69
501 614 1.074850 GGGGAGGAGAAGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
525 638 3.466791 ATGCCCCCGAGATTCTGCG 62.467 63.158 0.00 0.00 0.00 5.18
557 670 1.703411 TTTCTTTCTGGCCTTGTGGG 58.297 50.000 3.32 0.00 38.36 4.61
574 687 5.059134 TGTGGGGTTATTATCATGATGCA 57.941 39.130 18.72 5.18 0.00 3.96
619 760 1.055338 GATGTTCTTGCGTGCTTTGC 58.945 50.000 0.00 0.00 0.00 3.68
706 847 3.639099 CACTGATTGGAGTGCCTGT 57.361 52.632 0.00 0.00 37.16 4.00
724 865 6.017770 GTGCCTGTGTTTTGTATTGTACTACA 60.018 38.462 0.00 0.00 0.00 2.74
725 866 6.712998 TGCCTGTGTTTTGTATTGTACTACAT 59.287 34.615 0.00 0.00 31.94 2.29
806 958 4.340950 GGAACAAGAAATCAACCAAGTGGA 59.659 41.667 3.83 0.00 38.94 4.02
857 1009 5.970317 ATCATGTTCTTCACTTTCATGCA 57.030 34.783 0.00 0.00 36.73 3.96
858 1010 5.970317 TCATGTTCTTCACTTTCATGCAT 57.030 34.783 0.00 0.00 36.73 3.96
890 1042 1.172175 TGCGCATGCCTTGATTTACA 58.828 45.000 13.15 0.00 41.78 2.41
1117 1270 1.074084 TGGTTTATTTGTCAGCGGGGA 59.926 47.619 0.00 0.00 0.00 4.81
1139 1295 4.693042 TGCATCACATGATCACTGGATA 57.307 40.909 0.00 0.00 32.67 2.59
1140 1296 4.638304 TGCATCACATGATCACTGGATAG 58.362 43.478 0.00 0.00 32.67 2.08
1141 1297 4.001652 GCATCACATGATCACTGGATAGG 58.998 47.826 0.00 0.00 32.67 2.57
1142 1298 4.262765 GCATCACATGATCACTGGATAGGA 60.263 45.833 0.00 0.00 32.67 2.94
1143 1299 5.571047 GCATCACATGATCACTGGATAGGAT 60.571 44.000 0.00 0.00 32.67 3.24
1144 1300 6.351626 GCATCACATGATCACTGGATAGGATA 60.352 42.308 0.00 0.00 32.67 2.59
1145 1301 6.596309 TCACATGATCACTGGATAGGATAC 57.404 41.667 0.00 0.00 32.67 2.24
1146 1302 5.481824 TCACATGATCACTGGATAGGATACC 59.518 44.000 0.00 0.00 32.67 2.73
1477 1633 3.464111 TGCATGTCTGTGATGATCGAT 57.536 42.857 0.00 0.00 0.00 3.59
1634 1790 4.764823 AGCTTCGGATGACCAATGTTAAAA 59.235 37.500 0.00 0.00 35.59 1.52
1666 1822 2.158623 TCTGTTTGTGCCTCCTGATTGT 60.159 45.455 0.00 0.00 0.00 2.71
1825 1986 7.744087 TGTCATTCTTACTACATGCAAAAGT 57.256 32.000 0.00 0.00 0.00 2.66
1873 2034 7.065085 CAGTGGTTGTACTTCCATTATCTGAAG 59.935 40.741 11.48 0.00 42.86 3.02
1975 2137 3.177228 GGCTGGATGTCAGGGATATACT 58.823 50.000 0.00 0.00 43.54 2.12
1976 2138 4.353777 GGCTGGATGTCAGGGATATACTA 58.646 47.826 0.00 0.00 43.54 1.82
1977 2139 4.160626 GGCTGGATGTCAGGGATATACTAC 59.839 50.000 0.00 0.00 43.54 2.73
1978 2140 5.020132 GCTGGATGTCAGGGATATACTACT 58.980 45.833 0.00 0.00 43.54 2.57
1979 2141 5.126384 GCTGGATGTCAGGGATATACTACTC 59.874 48.000 0.00 0.00 43.54 2.59
1980 2142 5.580998 TGGATGTCAGGGATATACTACTCC 58.419 45.833 0.00 0.00 0.00 3.85
1986 2148 3.735720 GGGATATACTACTCCCTCCGT 57.264 52.381 2.31 0.00 46.55 4.69
1987 2149 3.619419 GGGATATACTACTCCCTCCGTC 58.381 54.545 2.31 0.00 46.55 4.79
1988 2150 3.619419 GGATATACTACTCCCTCCGTCC 58.381 54.545 0.00 0.00 0.00 4.79
1989 2151 2.847327 TATACTACTCCCTCCGTCCG 57.153 55.000 0.00 0.00 0.00 4.79
1990 2152 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
1991 2153 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
1992 2154 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
1993 2155 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
1994 2156 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1995 2157 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1996 2158 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1997 2159 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1998 2160 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1999 2161 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2000 2162 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2001 2163 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2002 2164 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2003 2165 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2004 2166 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2005 2167 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2006 2168 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
2007 2169 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
2008 2170 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
2009 2171 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
2010 2172 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
2011 2173 3.877508 GGAAATACTTGTCGGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
2012 2174 4.383770 GGAAATACTTGTCGGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
2013 2175 5.368989 GAAATACTTGTCGGAGGAATGGAT 58.631 41.667 0.00 0.00 0.00 3.41
2014 2176 2.698855 ACTTGTCGGAGGAATGGATG 57.301 50.000 0.00 0.00 0.00 3.51
2015 2177 1.909302 ACTTGTCGGAGGAATGGATGT 59.091 47.619 0.00 0.00 0.00 3.06
2016 2178 3.104512 ACTTGTCGGAGGAATGGATGTA 58.895 45.455 0.00 0.00 0.00 2.29
2017 2179 3.711704 ACTTGTCGGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 0.00 2.29
2018 2180 3.751479 TGTCGGAGGAATGGATGTATG 57.249 47.619 0.00 0.00 0.00 2.39
2019 2181 3.038280 TGTCGGAGGAATGGATGTATGT 58.962 45.455 0.00 0.00 0.00 2.29
2020 2182 4.219919 TGTCGGAGGAATGGATGTATGTA 58.780 43.478 0.00 0.00 0.00 2.29
2021 2183 4.280929 TGTCGGAGGAATGGATGTATGTAG 59.719 45.833 0.00 0.00 0.00 2.74
2022 2184 4.523173 GTCGGAGGAATGGATGTATGTAGA 59.477 45.833 0.00 0.00 0.00 2.59
2023 2185 4.523173 TCGGAGGAATGGATGTATGTAGAC 59.477 45.833 0.00 0.00 0.00 2.59
2024 2186 4.616143 CGGAGGAATGGATGTATGTAGACG 60.616 50.000 0.00 0.00 0.00 4.18
2025 2187 4.281182 GGAGGAATGGATGTATGTAGACGT 59.719 45.833 0.00 0.00 0.00 4.34
2026 2188 5.475909 GGAGGAATGGATGTATGTAGACGTA 59.524 44.000 0.00 0.00 0.00 3.57
2027 2189 6.153000 GGAGGAATGGATGTATGTAGACGTAT 59.847 42.308 0.00 0.00 0.00 3.06
2028 2190 7.309867 GGAGGAATGGATGTATGTAGACGTATT 60.310 40.741 0.00 0.00 0.00 1.89
2029 2191 7.963532 AGGAATGGATGTATGTAGACGTATTT 58.036 34.615 0.00 0.00 0.00 1.40
2030 2192 8.429641 AGGAATGGATGTATGTAGACGTATTTT 58.570 33.333 0.00 0.00 0.00 1.82
2031 2193 9.701098 GGAATGGATGTATGTAGACGTATTTTA 57.299 33.333 0.00 0.00 0.00 1.52
2035 2197 9.740239 TGGATGTATGTAGACGTATTTTAGTTC 57.260 33.333 0.00 0.00 0.00 3.01
2036 2198 9.962783 GGATGTATGTAGACGTATTTTAGTTCT 57.037 33.333 0.00 0.00 0.00 3.01
2065 2227 7.760131 ACATTCATTTTTATGCATTTCTCCG 57.240 32.000 3.54 0.00 0.00 4.63
2066 2228 7.546358 ACATTCATTTTTATGCATTTCTCCGA 58.454 30.769 3.54 0.00 0.00 4.55
2067 2229 7.489113 ACATTCATTTTTATGCATTTCTCCGAC 59.511 33.333 3.54 0.00 0.00 4.79
2068 2230 6.507958 TCATTTTTATGCATTTCTCCGACA 57.492 33.333 3.54 0.00 0.00 4.35
2069 2231 7.099266 TCATTTTTATGCATTTCTCCGACAT 57.901 32.000 3.54 0.00 0.00 3.06
2070 2232 6.974048 TCATTTTTATGCATTTCTCCGACATG 59.026 34.615 3.54 0.00 0.00 3.21
2071 2233 5.895636 TTTTATGCATTTCTCCGACATGT 57.104 34.783 3.54 0.00 0.00 3.21
2072 2234 6.993786 TTTTATGCATTTCTCCGACATGTA 57.006 33.333 3.54 0.00 0.00 2.29
2073 2235 7.566760 TTTTATGCATTTCTCCGACATGTAT 57.433 32.000 3.54 0.00 31.97 2.29
2074 2236 7.566760 TTTATGCATTTCTCCGACATGTATT 57.433 32.000 3.54 0.00 30.37 1.89
2075 2237 7.566760 TTATGCATTTCTCCGACATGTATTT 57.433 32.000 3.54 0.00 30.37 1.40
2076 2238 5.484173 TGCATTTCTCCGACATGTATTTC 57.516 39.130 0.00 0.00 0.00 2.17
2077 2239 4.335315 TGCATTTCTCCGACATGTATTTCC 59.665 41.667 0.00 0.00 0.00 3.13
2078 2240 4.552767 GCATTTCTCCGACATGTATTTCCG 60.553 45.833 0.00 0.00 0.00 4.30
2079 2241 2.882927 TCTCCGACATGTATTTCCGG 57.117 50.000 14.92 14.92 41.36 5.14
2080 2242 2.380941 TCTCCGACATGTATTTCCGGA 58.619 47.619 20.53 20.53 45.74 5.14
2081 2243 2.100252 TCTCCGACATGTATTTCCGGAC 59.900 50.000 18.61 0.00 43.47 4.79
2082 2244 1.202325 TCCGACATGTATTTCCGGACG 60.202 52.381 18.61 0.00 43.47 4.79
2083 2245 1.205657 CGACATGTATTTCCGGACGG 58.794 55.000 1.83 3.96 0.00 4.79
2084 2246 1.202325 CGACATGTATTTCCGGACGGA 60.202 52.381 1.83 9.76 43.52 4.69
2085 2247 2.470821 GACATGTATTTCCGGACGGAG 58.529 52.381 13.64 3.15 46.06 4.63
2086 2248 1.138266 ACATGTATTTCCGGACGGAGG 59.862 52.381 13.64 0.00 46.06 4.30
2087 2249 0.756903 ATGTATTTCCGGACGGAGGG 59.243 55.000 13.64 0.00 46.06 4.30
2088 2250 0.324552 TGTATTTCCGGACGGAGGGA 60.325 55.000 13.64 4.95 46.06 4.20
2089 2251 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2107 2270 7.506114 GGAGGGAGTACATGTATTGTTTCATA 58.494 38.462 9.18 0.00 39.87 2.15
2177 2340 3.188873 TGTACCATTCCTTTAAAACGGCG 59.811 43.478 4.80 4.80 0.00 6.46
2290 2453 5.485353 TGAACTGGTAGAGATTTCAGACCAT 59.515 40.000 9.61 0.00 39.47 3.55
2336 2499 4.884458 GCTCCCAGCAAAGAAATACTAC 57.116 45.455 0.00 0.00 41.89 2.73
2337 2500 4.518249 GCTCCCAGCAAAGAAATACTACT 58.482 43.478 0.00 0.00 41.89 2.57
2338 2501 5.671493 GCTCCCAGCAAAGAAATACTACTA 58.329 41.667 0.00 0.00 41.89 1.82
2366 2529 0.466189 AATTGGCAGGGATAGCACCG 60.466 55.000 0.00 0.00 0.00 4.94
2611 2777 4.036971 CCCTCTGTATCTGTCCTAAACTCG 59.963 50.000 0.00 0.00 0.00 4.18
2710 2876 5.512404 CCACACTCCACTGTAAATGTCCTTA 60.512 44.000 0.00 0.00 0.00 2.69
2813 2979 7.132863 TCAAGTAACATCTCATCGACGATAAG 58.867 38.462 10.57 5.75 0.00 1.73
2817 2983 0.959553 TCTCATCGACGATAAGGGCC 59.040 55.000 10.57 0.00 0.00 5.80
2830 2996 2.696526 AAGGGCCGTAGATGGATCTA 57.303 50.000 0.00 0.00 38.32 1.98
2836 3002 5.546499 AGGGCCGTAGATGGATCTAAAAATA 59.454 40.000 0.00 0.00 40.77 1.40
2931 3097 3.007398 CAGGGAAGGTATGCTATGTCCTC 59.993 52.174 0.00 0.00 0.00 3.71
2951 3117 9.922477 TGTCCTCTTTTGAACTCTATCTCTATA 57.078 33.333 0.00 0.00 0.00 1.31
2998 3164 2.617788 GCCACCAATATGTGACCAGACA 60.618 50.000 0.00 0.00 38.55 3.41
3062 3228 5.718801 TCTACAGAGAGATCTACCTGGTT 57.281 43.478 21.14 9.24 0.00 3.67
3197 3365 4.989279 ACTGTTGTTTGTGCTGATTTCT 57.011 36.364 0.00 0.00 0.00 2.52
3199 3367 6.449635 ACTGTTGTTTGTGCTGATTTCTTA 57.550 33.333 0.00 0.00 0.00 2.10
3313 3485 8.535335 GGATATGCTCATTGATCCTTCTAACTA 58.465 37.037 4.99 0.00 35.86 2.24
3387 3908 8.131100 CCTTGATGCCATTTTTGTATGTACTAG 58.869 37.037 0.00 0.00 0.00 2.57
3388 3909 8.574251 TTGATGCCATTTTTGTATGTACTAGT 57.426 30.769 0.00 0.00 0.00 2.57
3393 3914 6.183360 GCCATTTTTGTATGTACTAGTGTCCC 60.183 42.308 5.39 0.00 0.00 4.46
3394 3915 6.317893 CCATTTTTGTATGTACTAGTGTCCCC 59.682 42.308 5.39 0.00 0.00 4.81
3395 3916 5.425196 TTTTGTATGTACTAGTGTCCCCC 57.575 43.478 5.39 0.00 0.00 5.40
3420 4171 9.804758 CCCAGTCTGTAACTATAGAAACTTTAG 57.195 37.037 6.78 0.00 36.07 1.85
3427 4178 9.595823 TGTAACTATAGAAACTTTAGTGGATGC 57.404 33.333 6.78 0.00 30.86 3.91
3503 4361 0.859232 CATCTTGTATGTACGCCGGC 59.141 55.000 19.07 19.07 0.00 6.13
3616 4474 4.820173 ACCGTGTCAGATAGTATCATTCGA 59.180 41.667 12.66 0.99 0.00 3.71
3617 4475 5.473846 ACCGTGTCAGATAGTATCATTCGAT 59.526 40.000 12.66 0.00 35.50 3.59
3680 4539 8.183536 GCAACTGTCAAATCATGTTGTCATATA 58.816 33.333 0.00 0.00 39.81 0.86
3693 4552 9.547753 CATGTTGTCATATAACTTAGCCTAACT 57.452 33.333 0.00 0.00 32.47 2.24
3800 4661 9.965902 ACAACTCATGATTATTTTAGAACTCCT 57.034 29.630 0.00 0.00 0.00 3.69
3815 4676 6.739331 AGAACTCCTTTCCTATCATAGTGG 57.261 41.667 0.00 0.00 34.32 4.00
3816 4677 6.206042 AGAACTCCTTTCCTATCATAGTGGT 58.794 40.000 0.00 0.00 34.32 4.16
3957 4818 7.165977 GGTCTTTTCTTCTTTGATGTTCGTTTC 59.834 37.037 0.00 0.00 0.00 2.78
3991 4852 0.457035 GCGATGTCCACCGGTAAGTA 59.543 55.000 6.87 0.00 0.00 2.24
4010 4872 1.600916 GGCACTTCACACCCACCTC 60.601 63.158 0.00 0.00 0.00 3.85
4210 5080 3.233507 AGCAAGTCAAATTCCACCATGT 58.766 40.909 0.00 0.00 0.00 3.21
4230 5100 2.821969 GTTGCAGGTGTTGATCTCCATT 59.178 45.455 0.00 0.00 32.63 3.16
4287 5157 1.953686 GAGCCAGGCTACAAAAACACA 59.046 47.619 16.16 0.00 39.88 3.72
4300 5170 7.589954 GCTACAAAAACACAGTTAATACACCTG 59.410 37.037 0.00 0.00 0.00 4.00
4380 5250 6.812160 AGACTATGTTGTATTCACTTCGGAAC 59.188 38.462 0.00 0.00 0.00 3.62
4433 5304 4.462483 TCTTGCCATGGTAAAAAGATGTCC 59.538 41.667 16.54 0.00 0.00 4.02
4436 5307 4.016444 GCCATGGTAAAAAGATGTCCTGA 58.984 43.478 14.67 0.00 0.00 3.86
4504 5375 0.469917 ATTGCTGATACCCGTCCTGG 59.530 55.000 0.00 0.00 37.55 4.45
4684 5556 7.970614 CACCCTAATAGCTGAATTTTGTTTCTC 59.029 37.037 0.00 0.00 0.00 2.87
4738 5610 6.721571 TTCCTTTTTAGCTGTGATAAGTCG 57.278 37.500 0.00 0.00 0.00 4.18
4779 5651 2.023984 TCTGCACCCATAGAGAGAGGAA 60.024 50.000 0.00 0.00 0.00 3.36
4782 5654 3.782523 TGCACCCATAGAGAGAGGAATTT 59.217 43.478 0.00 0.00 0.00 1.82
4814 5686 6.857964 GTGAGTTGTGACATGAAATTACCAAG 59.142 38.462 0.00 0.00 0.00 3.61
4821 5693 8.253810 TGTGACATGAAATTACCAAGTTCAAAA 58.746 29.630 0.00 0.00 46.76 2.44
4889 5761 9.248291 TGTTGAACAAATAGAGCAAGAAAAATC 57.752 29.630 0.00 0.00 0.00 2.17
5008 6041 7.553881 AAATACATCCTTCAGATTTGTACGG 57.446 36.000 0.00 0.00 30.59 4.02
5060 6093 4.079253 TCATTCTTACAAGCCTTTCACCC 58.921 43.478 0.00 0.00 0.00 4.61
5307 6340 3.959991 GAAGGGAGACACGCCAGCC 62.960 68.421 0.00 0.00 0.00 4.85
5416 6455 4.078363 GTGTAAATCACAATCCACACGG 57.922 45.455 0.00 0.00 45.51 4.94
5428 6467 2.193127 TCCACACGGAAGGTATGGAAT 58.807 47.619 0.00 0.00 38.83 3.01
5431 6470 3.875134 CCACACGGAAGGTATGGAATAAC 59.125 47.826 0.00 0.00 36.52 1.89
5452 6491 2.900546 CTCTAGGGGTGATGGTATGACC 59.099 54.545 0.00 0.00 39.22 4.02
5472 6511 4.189231 ACCGTAGATGAATTGGTTGTAGC 58.811 43.478 0.00 0.00 0.00 3.58
5477 6516 6.292381 CGTAGATGAATTGGTTGTAGCTTAGC 60.292 42.308 0.00 0.00 0.00 3.09
5479 6518 5.355350 AGATGAATTGGTTGTAGCTTAGCAC 59.645 40.000 7.07 3.45 0.00 4.40
5525 6564 2.294233 TCGCCACGTTATATGTCTACCC 59.706 50.000 0.00 0.00 0.00 3.69
5555 6594 3.119673 TGGTTTTATACATGCTTGGTGCG 60.120 43.478 4.44 0.00 46.63 5.34
5561 6600 4.047059 ATGCTTGGTGCGTGCTGC 62.047 61.111 0.00 0.00 46.63 5.25
5570 6609 3.257933 GCGTGCTGCACTTAGCTT 58.742 55.556 28.04 0.00 45.94 3.74
5571 6610 1.133458 GCGTGCTGCACTTAGCTTC 59.867 57.895 28.04 1.94 45.94 3.86
5572 6611 1.568612 GCGTGCTGCACTTAGCTTCA 61.569 55.000 28.04 0.00 45.94 3.02
5573 6612 0.441533 CGTGCTGCACTTAGCTTCAG 59.558 55.000 28.04 7.58 45.94 3.02
5574 6613 1.517242 GTGCTGCACTTAGCTTCAGT 58.483 50.000 24.68 0.00 45.94 3.41
5583 6623 1.736681 CTTAGCTTCAGTTGCCTCTGC 59.263 52.381 0.00 0.00 35.63 4.26
5602 6643 4.154737 TCTGCAAGTGTGAATAGAACATGC 59.845 41.667 0.00 0.00 35.22 4.06
5603 6644 3.819902 TGCAAGTGTGAATAGAACATGCA 59.180 39.130 1.27 1.27 39.80 3.96
5604 6645 4.460034 TGCAAGTGTGAATAGAACATGCAT 59.540 37.500 0.00 0.00 38.16 3.96
5605 6646 4.796830 GCAAGTGTGAATAGAACATGCATG 59.203 41.667 25.09 25.09 34.92 4.06
5623 6664 1.608055 TGTGCCACTTTGATGACCAG 58.392 50.000 0.00 0.00 0.00 4.00
5624 6665 0.242017 GTGCCACTTTGATGACCAGC 59.758 55.000 0.00 0.00 0.00 4.85
5625 6666 0.178995 TGCCACTTTGATGACCAGCA 60.179 50.000 0.00 0.00 0.00 4.41
5626 6667 0.242017 GCCACTTTGATGACCAGCAC 59.758 55.000 0.00 0.00 0.00 4.40
5627 6668 1.608055 CCACTTTGATGACCAGCACA 58.392 50.000 0.00 0.00 0.00 4.57
5628 6669 1.955778 CCACTTTGATGACCAGCACAA 59.044 47.619 0.00 0.00 0.00 3.33
5629 6670 2.287788 CCACTTTGATGACCAGCACAAC 60.288 50.000 0.00 0.00 0.00 3.32
5630 6671 2.620115 CACTTTGATGACCAGCACAACT 59.380 45.455 0.00 0.00 0.00 3.16
5631 6672 2.880890 ACTTTGATGACCAGCACAACTC 59.119 45.455 0.00 0.00 0.00 3.01
5632 6673 1.511850 TTGATGACCAGCACAACTCG 58.488 50.000 0.00 0.00 0.00 4.18
5633 6674 0.678950 TGATGACCAGCACAACTCGA 59.321 50.000 0.00 0.00 0.00 4.04
5634 6675 1.276138 TGATGACCAGCACAACTCGAT 59.724 47.619 0.00 0.00 0.00 3.59
5635 6676 1.662629 GATGACCAGCACAACTCGATG 59.337 52.381 0.00 0.00 0.00 3.84
5636 6677 0.392706 TGACCAGCACAACTCGATGT 59.607 50.000 0.00 0.00 0.00 3.06
5637 6678 1.202639 TGACCAGCACAACTCGATGTT 60.203 47.619 0.00 0.00 39.92 2.71
5638 6679 1.873591 GACCAGCACAACTCGATGTTT 59.126 47.619 0.00 0.00 36.63 2.83
5639 6680 3.064207 GACCAGCACAACTCGATGTTTA 58.936 45.455 0.00 0.00 36.63 2.01
5640 6681 3.674997 ACCAGCACAACTCGATGTTTAT 58.325 40.909 0.00 0.00 36.63 1.40
5641 6682 4.072131 ACCAGCACAACTCGATGTTTATT 58.928 39.130 0.00 0.00 36.63 1.40
5642 6683 4.518970 ACCAGCACAACTCGATGTTTATTT 59.481 37.500 0.00 0.00 36.63 1.40
5643 6684 5.009610 ACCAGCACAACTCGATGTTTATTTT 59.990 36.000 0.00 0.00 36.63 1.82
5644 6685 6.205853 ACCAGCACAACTCGATGTTTATTTTA 59.794 34.615 0.00 0.00 36.63 1.52
5645 6686 7.094377 ACCAGCACAACTCGATGTTTATTTTAT 60.094 33.333 0.00 0.00 36.63 1.40
5646 6687 7.218773 CCAGCACAACTCGATGTTTATTTTATG 59.781 37.037 0.00 0.00 36.63 1.90
5647 6688 7.750458 CAGCACAACTCGATGTTTATTTTATGT 59.250 33.333 0.00 0.00 36.63 2.29
5648 6689 8.296713 AGCACAACTCGATGTTTATTTTATGTT 58.703 29.630 0.00 0.00 36.63 2.71
5649 6690 8.911662 GCACAACTCGATGTTTATTTTATGTTT 58.088 29.630 0.00 0.00 36.63 2.83
5662 6703 9.995003 TTTATTTTATGTTTCATGTTTCAGCCT 57.005 25.926 0.00 0.00 0.00 4.58
5663 6704 7.894376 ATTTTATGTTTCATGTTTCAGCCTG 57.106 32.000 0.00 0.00 0.00 4.85
5664 6705 6.647334 TTTATGTTTCATGTTTCAGCCTGA 57.353 33.333 0.00 0.00 0.00 3.86
5665 6706 6.839124 TTATGTTTCATGTTTCAGCCTGAT 57.161 33.333 0.00 0.00 0.00 2.90
5666 6707 5.733620 ATGTTTCATGTTTCAGCCTGATT 57.266 34.783 0.00 0.00 0.00 2.57
5667 6708 6.839124 ATGTTTCATGTTTCAGCCTGATTA 57.161 33.333 0.00 0.00 0.00 1.75
5668 6709 6.647334 TGTTTCATGTTTCAGCCTGATTAA 57.353 33.333 0.00 0.00 0.00 1.40
5669 6710 7.230849 TGTTTCATGTTTCAGCCTGATTAAT 57.769 32.000 0.00 0.00 0.00 1.40
5670 6711 7.315142 TGTTTCATGTTTCAGCCTGATTAATC 58.685 34.615 8.60 8.60 0.00 1.75
5671 6712 7.039853 TGTTTCATGTTTCAGCCTGATTAATCA 60.040 33.333 17.07 17.07 35.16 2.57
5672 6713 7.465353 TTCATGTTTCAGCCTGATTAATCAA 57.535 32.000 18.47 1.28 36.18 2.57
5673 6714 7.465353 TCATGTTTCAGCCTGATTAATCAAA 57.535 32.000 18.47 7.41 36.18 2.69
5674 6715 7.894708 TCATGTTTCAGCCTGATTAATCAAAA 58.105 30.769 18.47 12.57 36.18 2.44
5675 6716 8.030692 TCATGTTTCAGCCTGATTAATCAAAAG 58.969 33.333 18.47 11.43 36.18 2.27
5676 6717 7.288810 TGTTTCAGCCTGATTAATCAAAAGT 57.711 32.000 18.47 2.11 36.18 2.66
5677 6718 8.402798 TGTTTCAGCCTGATTAATCAAAAGTA 57.597 30.769 18.47 6.13 36.18 2.24
5678 6719 8.855110 TGTTTCAGCCTGATTAATCAAAAGTAA 58.145 29.630 18.47 8.41 36.18 2.24
5679 6720 9.691362 GTTTCAGCCTGATTAATCAAAAGTAAA 57.309 29.630 18.47 13.02 36.18 2.01
5700 6741 9.830975 AGTAAATAGCAAAACAAAAACAAGGAT 57.169 25.926 0.00 0.00 0.00 3.24
5707 6748 9.260002 AGCAAAACAAAAACAAGGATATTACAG 57.740 29.630 0.00 0.00 0.00 2.74
5708 6749 8.495148 GCAAAACAAAAACAAGGATATTACAGG 58.505 33.333 0.00 0.00 0.00 4.00
5725 6783 1.534163 CAGGTTCAGTCATGTGCACAG 59.466 52.381 25.84 16.57 0.00 3.66
5740 6798 1.069364 GCACAGTCTTCAGCTTTCAGC 60.069 52.381 0.00 0.00 42.84 4.26
5769 6827 6.899393 AAGATTTAAGCAGACATGTTTCCA 57.101 33.333 0.00 0.00 31.67 3.53
5770 6828 7.472334 AAGATTTAAGCAGACATGTTTCCAT 57.528 32.000 0.00 0.00 31.67 3.41
5771 6829 7.093322 AGATTTAAGCAGACATGTTTCCATC 57.907 36.000 0.00 0.00 31.67 3.51
5772 6830 6.888632 AGATTTAAGCAGACATGTTTCCATCT 59.111 34.615 0.00 0.00 31.67 2.90
5773 6831 8.049117 AGATTTAAGCAGACATGTTTCCATCTA 58.951 33.333 0.00 0.00 31.88 1.98
5774 6832 7.994425 TTTAAGCAGACATGTTTCCATCTAA 57.006 32.000 0.00 0.00 31.67 2.10
5775 6833 8.579850 TTTAAGCAGACATGTTTCCATCTAAT 57.420 30.769 0.00 0.00 31.67 1.73
5776 6834 6.690194 AAGCAGACATGTTTCCATCTAATC 57.310 37.500 0.00 0.00 0.00 1.75
5777 6835 5.999044 AGCAGACATGTTTCCATCTAATCT 58.001 37.500 0.00 0.00 0.00 2.40
5816 6874 5.368256 AAAGAATGTCTGCATCTCACAAC 57.632 39.130 0.00 0.00 33.50 3.32
5817 6875 4.283363 AGAATGTCTGCATCTCACAACT 57.717 40.909 0.00 0.00 33.50 3.16
5818 6876 4.001652 AGAATGTCTGCATCTCACAACTG 58.998 43.478 0.00 0.00 33.50 3.16
5819 6877 2.174363 TGTCTGCATCTCACAACTGG 57.826 50.000 0.00 0.00 0.00 4.00
5820 6878 0.801251 GTCTGCATCTCACAACTGGC 59.199 55.000 0.00 0.00 0.00 4.85
5821 6879 0.689055 TCTGCATCTCACAACTGGCT 59.311 50.000 0.00 0.00 0.00 4.75
5822 6880 1.072806 TCTGCATCTCACAACTGGCTT 59.927 47.619 0.00 0.00 0.00 4.35
5823 6881 2.302733 TCTGCATCTCACAACTGGCTTA 59.697 45.455 0.00 0.00 0.00 3.09
5824 6882 2.417933 CTGCATCTCACAACTGGCTTAC 59.582 50.000 0.00 0.00 0.00 2.34
5825 6883 1.394917 GCATCTCACAACTGGCTTACG 59.605 52.381 0.00 0.00 0.00 3.18
5826 6884 2.930887 GCATCTCACAACTGGCTTACGA 60.931 50.000 0.00 0.00 0.00 3.43
5827 6885 2.724977 TCTCACAACTGGCTTACGAG 57.275 50.000 0.00 0.00 0.00 4.18
5853 6911 7.360438 GCAGAGGTACAAAACTTGATAGTTCAG 60.360 40.741 0.00 0.00 43.74 3.02
6241 7309 4.660938 GTGGCGCCCCTCTTGGTT 62.661 66.667 26.77 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.675423 CCAGACCAGACGGACCGA 60.675 66.667 23.38 0.00 35.59 4.69
192 195 4.131088 GACGGTCGGTCTCAGGGC 62.131 72.222 3.39 0.00 42.62 5.19
378 482 0.395686 AACAGAGCAGAGCAGAGCAA 59.604 50.000 0.00 0.00 0.00 3.91
405 513 0.445436 GAGCAAACCAGCACGATCAG 59.555 55.000 0.00 0.00 36.85 2.90
440 548 1.971357 AGTATAGAACCATGGCGAGGG 59.029 52.381 13.04 0.00 0.00 4.30
456 564 6.741992 TCGCACAATCAATCAAAAGAGTAT 57.258 33.333 0.00 0.00 0.00 2.12
492 605 1.385206 GCATCCCTCCCTCCTCCTT 60.385 63.158 0.00 0.00 0.00 3.36
525 638 5.797434 GCCAGAAAGAAAACGAAAGATGATC 59.203 40.000 0.00 0.00 0.00 2.92
574 687 3.569491 CATGGGGGCAAAGAGTATCATT 58.431 45.455 0.00 0.00 37.82 2.57
619 760 2.541588 CCCAGCAACAGACAAAACGAAG 60.542 50.000 0.00 0.00 0.00 3.79
724 865 2.422377 GGCCCCGGTGAGTTGTTTATAT 60.422 50.000 0.00 0.00 0.00 0.86
725 866 1.065272 GGCCCCGGTGAGTTGTTTATA 60.065 52.381 0.00 0.00 0.00 0.98
739 881 4.444838 TCATGTTCGTCGGCCCCG 62.445 66.667 0.00 0.00 41.35 5.73
764 906 7.547697 TGTTCCCCTTTTCCCTTTATTTAAG 57.452 36.000 0.00 0.00 0.00 1.85
769 911 5.348259 TCTTGTTCCCCTTTTCCCTTTAT 57.652 39.130 0.00 0.00 0.00 1.40
816 968 5.359194 TGATAATCTTGGACAGGAGGAAC 57.641 43.478 0.00 0.00 0.00 3.62
857 1009 3.181517 GCATGCGCATGAACGACATATAT 60.182 43.478 45.47 9.72 41.20 0.86
858 1010 2.157474 GCATGCGCATGAACGACATATA 59.843 45.455 45.47 5.57 41.20 0.86
1078 1230 3.920841 ACCAAGTTAACCAGGGAAGGTAT 59.079 43.478 15.91 0.00 42.25 2.73
1117 1270 3.570912 TCCAGTGATCATGTGATGCAT 57.429 42.857 0.00 0.00 38.60 3.96
1140 1296 0.927029 AAAGAGGGCAAGGGGTATCC 59.073 55.000 0.00 0.00 0.00 2.59
1141 1297 3.945640 TTAAAGAGGGCAAGGGGTATC 57.054 47.619 0.00 0.00 0.00 2.24
1142 1298 4.202738 TGTTTTAAAGAGGGCAAGGGGTAT 60.203 41.667 0.00 0.00 0.00 2.73
1143 1299 3.140519 TGTTTTAAAGAGGGCAAGGGGTA 59.859 43.478 0.00 0.00 0.00 3.69
1144 1300 2.090999 TGTTTTAAAGAGGGCAAGGGGT 60.091 45.455 0.00 0.00 0.00 4.95
1145 1301 2.604139 TGTTTTAAAGAGGGCAAGGGG 58.396 47.619 0.00 0.00 0.00 4.79
1146 1302 4.890158 ATTGTTTTAAAGAGGGCAAGGG 57.110 40.909 0.00 0.00 0.00 3.95
1312 1468 8.262601 TGACATAACTATCTGGACCATACAAT 57.737 34.615 0.00 0.00 0.00 2.71
1503 1659 9.526713 AAAATGTTTTTCCAACAAATAATTGGC 57.473 25.926 0.00 0.00 45.38 4.52
1634 1790 5.673514 AGGCACAAACAGAACATTTCAAAT 58.326 33.333 0.00 0.00 0.00 2.32
1728 1889 7.072030 CTGTAATCAGTACTGCAAGTGAAAAC 58.928 38.462 18.45 6.32 40.52 2.43
1873 2034 8.510505 CCTATATTTCTAAGAGGCTGCATTTTC 58.489 37.037 0.50 0.00 0.00 2.29
1975 2137 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1976 2138 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1977 2139 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1978 2140 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1979 2141 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1980 2142 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1981 2143 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
1982 2144 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
1983 2145 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
1984 2146 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
1985 2147 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
1986 2148 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
1987 2149 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
1988 2150 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
1989 2151 3.877508 CCATTCCTCCGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
1990 2152 4.766375 TCCATTCCTCCGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
1991 2153 4.837093 TCCATTCCTCCGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
1992 2154 4.164221 ACATCCATTCCTCCGACAAGTATT 59.836 41.667 0.00 0.00 0.00 1.89
1993 2155 3.711704 ACATCCATTCCTCCGACAAGTAT 59.288 43.478 0.00 0.00 0.00 2.12
1994 2156 3.104512 ACATCCATTCCTCCGACAAGTA 58.895 45.455 0.00 0.00 0.00 2.24
1995 2157 1.909302 ACATCCATTCCTCCGACAAGT 59.091 47.619 0.00 0.00 0.00 3.16
1996 2158 2.698855 ACATCCATTCCTCCGACAAG 57.301 50.000 0.00 0.00 0.00 3.16
1997 2159 3.454447 ACATACATCCATTCCTCCGACAA 59.546 43.478 0.00 0.00 0.00 3.18
1998 2160 3.038280 ACATACATCCATTCCTCCGACA 58.962 45.455 0.00 0.00 0.00 4.35
1999 2161 3.753294 ACATACATCCATTCCTCCGAC 57.247 47.619 0.00 0.00 0.00 4.79
2000 2162 4.523173 GTCTACATACATCCATTCCTCCGA 59.477 45.833 0.00 0.00 0.00 4.55
2001 2163 4.616143 CGTCTACATACATCCATTCCTCCG 60.616 50.000 0.00 0.00 0.00 4.63
2002 2164 4.281182 ACGTCTACATACATCCATTCCTCC 59.719 45.833 0.00 0.00 0.00 4.30
2003 2165 5.455056 ACGTCTACATACATCCATTCCTC 57.545 43.478 0.00 0.00 0.00 3.71
2004 2166 7.540474 AATACGTCTACATACATCCATTCCT 57.460 36.000 0.00 0.00 0.00 3.36
2005 2167 8.603242 AAAATACGTCTACATACATCCATTCC 57.397 34.615 0.00 0.00 0.00 3.01
2009 2171 9.740239 GAACTAAAATACGTCTACATACATCCA 57.260 33.333 0.00 0.00 0.00 3.41
2010 2172 9.962783 AGAACTAAAATACGTCTACATACATCC 57.037 33.333 0.00 0.00 0.00 3.51
2039 2201 9.467258 CGGAGAAATGCATAAAAATGAATGTAT 57.533 29.630 0.00 0.00 30.86 2.29
2040 2202 8.681806 TCGGAGAAATGCATAAAAATGAATGTA 58.318 29.630 0.00 0.00 0.00 2.29
2041 2203 7.489113 GTCGGAGAAATGCATAAAAATGAATGT 59.511 33.333 0.00 0.00 39.69 2.71
2042 2204 7.488792 TGTCGGAGAAATGCATAAAAATGAATG 59.511 33.333 0.00 0.00 39.69 2.67
2043 2205 7.546358 TGTCGGAGAAATGCATAAAAATGAAT 58.454 30.769 0.00 0.00 39.69 2.57
2044 2206 6.918626 TGTCGGAGAAATGCATAAAAATGAA 58.081 32.000 0.00 0.00 39.69 2.57
2045 2207 6.507958 TGTCGGAGAAATGCATAAAAATGA 57.492 33.333 0.00 0.00 39.69 2.57
2046 2208 7.157050 CATGTCGGAGAAATGCATAAAAATG 57.843 36.000 0.00 0.00 46.07 2.32
2057 2219 4.127171 CCGGAAATACATGTCGGAGAAAT 58.873 43.478 15.79 0.00 42.94 2.17
2058 2220 3.196039 TCCGGAAATACATGTCGGAGAAA 59.804 43.478 18.61 0.70 43.84 2.52
2059 2221 2.761767 TCCGGAAATACATGTCGGAGAA 59.238 45.455 18.61 1.02 43.84 2.87
2060 2222 2.380941 TCCGGAAATACATGTCGGAGA 58.619 47.619 18.61 1.66 43.84 3.71
2061 2223 2.882927 TCCGGAAATACATGTCGGAG 57.117 50.000 18.61 1.20 43.84 4.63
2062 2224 1.202325 CGTCCGGAAATACATGTCGGA 60.202 52.381 18.61 18.61 46.06 4.55
2063 2225 1.205657 CGTCCGGAAATACATGTCGG 58.794 55.000 5.23 14.92 41.80 4.79
2064 2226 1.202325 TCCGTCCGGAAATACATGTCG 60.202 52.381 5.23 1.25 42.05 4.35
2065 2227 2.470821 CTCCGTCCGGAAATACATGTC 58.529 52.381 5.23 0.00 44.66 3.06
2066 2228 1.138266 CCTCCGTCCGGAAATACATGT 59.862 52.381 5.23 2.69 44.66 3.21
2067 2229 1.540363 CCCTCCGTCCGGAAATACATG 60.540 57.143 5.23 0.00 44.66 3.21
2068 2230 0.756903 CCCTCCGTCCGGAAATACAT 59.243 55.000 5.23 0.00 44.66 2.29
2069 2231 0.324552 TCCCTCCGTCCGGAAATACA 60.325 55.000 5.23 0.00 44.66 2.29
2070 2232 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2071 2233 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2072 2234 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2073 2235 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2074 2236 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2075 2237 1.929860 ATGTACTCCCTCCGTCCGGA 61.930 60.000 0.00 0.00 42.90 5.14
2076 2238 1.455217 ATGTACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
2077 2239 1.035932 ACATGTACTCCCTCCGTCCG 61.036 60.000 0.00 0.00 0.00 4.79
2078 2240 2.062971 TACATGTACTCCCTCCGTCC 57.937 55.000 0.08 0.00 0.00 4.79
2079 2241 3.383825 ACAATACATGTACTCCCTCCGTC 59.616 47.826 7.96 0.00 41.63 4.79
2080 2242 3.371965 ACAATACATGTACTCCCTCCGT 58.628 45.455 7.96 0.00 41.63 4.69
2081 2243 4.402056 AACAATACATGTACTCCCTCCG 57.598 45.455 7.96 0.00 42.99 4.63
2082 2244 5.741011 TGAAACAATACATGTACTCCCTCC 58.259 41.667 7.96 0.00 42.99 4.30
2083 2245 8.204836 AGTATGAAACAATACATGTACTCCCTC 58.795 37.037 7.96 3.70 42.99 4.30
2084 2246 8.090788 AGTATGAAACAATACATGTACTCCCT 57.909 34.615 7.96 0.00 42.99 4.20
2085 2247 8.612619 CAAGTATGAAACAATACATGTACTCCC 58.387 37.037 7.96 0.00 42.99 4.30
2086 2248 9.378551 TCAAGTATGAAACAATACATGTACTCC 57.621 33.333 7.96 0.00 42.99 3.85
2088 2250 9.383519 CCTCAAGTATGAAACAATACATGTACT 57.616 33.333 7.96 0.00 42.99 2.73
2089 2251 9.378551 TCCTCAAGTATGAAACAATACATGTAC 57.621 33.333 7.96 0.00 42.99 2.90
2107 2270 9.740710 AAGCTAATAGTTGTAATTTCCTCAAGT 57.259 29.630 0.00 0.00 0.00 3.16
2173 2336 1.144969 TTAGTGAAAGCAAGACGCCG 58.855 50.000 0.00 0.00 44.04 6.46
2177 2340 9.677567 TCATGTTAAATTTAGTGAAAGCAAGAC 57.322 29.630 0.00 0.00 0.00 3.01
2259 2422 4.866508 ATCTCTACCAGTTCAACGACAA 57.133 40.909 0.00 0.00 0.00 3.18
2290 2453 9.255304 GCACTAACATCAAGGTTTCATTAAAAA 57.745 29.630 0.00 0.00 32.29 1.94
2554 2720 2.549992 CCAACAGGCACTAGCAACTACA 60.550 50.000 0.00 0.00 44.61 2.74
2710 2876 6.209391 CAGGGATCCAAAAGAATGTTACTTGT 59.791 38.462 15.23 0.00 0.00 3.16
2813 2979 3.764237 TTTTAGATCCATCTACGGCCC 57.236 47.619 0.00 0.00 39.00 5.80
2817 2983 9.929180 TGATCCTTATTTTTAGATCCATCTACG 57.071 33.333 0.00 0.00 39.00 3.51
2844 3010 9.240159 ACAACGTCAAATTGGTTAAATAACTTC 57.760 29.630 3.55 0.00 36.47 3.01
2951 3117 8.143835 CAGGAAATTAATTCACAGTTGAACCTT 58.856 33.333 0.10 0.00 44.66 3.50
2998 3164 4.647424 TGTTTTCGTCCAATCTTTGCTT 57.353 36.364 0.00 0.00 0.00 3.91
3130 3298 4.299586 TGGATGCTTTCAGTATTCACCA 57.700 40.909 0.00 0.00 0.00 4.17
3303 3475 5.289675 CGCACAACTCAATCTAGTTAGAAGG 59.710 44.000 0.00 0.00 37.61 3.46
3313 3485 1.597742 AAGCACGCACAACTCAATCT 58.402 45.000 0.00 0.00 0.00 2.40
3393 3914 6.793505 AGTTTCTATAGTTACAGACTGGGG 57.206 41.667 7.51 0.00 39.48 4.96
3394 3915 9.804758 CTAAAGTTTCTATAGTTACAGACTGGG 57.195 37.037 7.51 0.00 39.48 4.45
3450 4308 1.537202 GCCAAGAAATGCAGAGAACGT 59.463 47.619 0.00 0.00 0.00 3.99
3503 4361 3.343972 CAGGAGTGCACCCAAACG 58.656 61.111 21.71 7.55 0.00 3.60
3616 4474 9.942526 ATTTTTCCCATTCTTCTCCAAGTATAT 57.057 29.630 0.00 0.00 0.00 0.86
3617 4475 9.189156 CATTTTTCCCATTCTTCTCCAAGTATA 57.811 33.333 0.00 0.00 0.00 1.47
3650 4509 6.804677 ACAACATGATTTGACAGTTGCTAAA 58.195 32.000 0.00 0.00 42.32 1.85
3651 4510 6.039159 TGACAACATGATTTGACAGTTGCTAA 59.961 34.615 0.00 0.00 42.32 3.09
3680 4539 6.371825 GCTGACACATTAAGTTAGGCTAAGTT 59.628 38.462 25.86 25.86 35.60 2.66
3684 4543 4.158949 TCGCTGACACATTAAGTTAGGCTA 59.841 41.667 0.00 0.00 0.00 3.93
3693 4552 3.925379 ACATGAGTCGCTGACACATTAA 58.075 40.909 14.95 0.00 39.96 1.40
3789 4650 8.705594 CCACTATGATAGGAAAGGAGTTCTAAA 58.294 37.037 4.27 0.00 36.40 1.85
3790 4651 7.844779 ACCACTATGATAGGAAAGGAGTTCTAA 59.155 37.037 4.27 0.00 36.40 2.10
3791 4652 7.287927 CACCACTATGATAGGAAAGGAGTTCTA 59.712 40.741 4.27 0.00 36.40 2.10
3792 4653 6.098982 CACCACTATGATAGGAAAGGAGTTCT 59.901 42.308 4.27 0.00 36.40 3.01
3793 4654 6.284459 CACCACTATGATAGGAAAGGAGTTC 58.716 44.000 4.27 0.00 35.28 3.01
3794 4655 5.131142 CCACCACTATGATAGGAAAGGAGTT 59.869 44.000 4.27 0.00 0.00 3.01
3795 4656 4.656112 CCACCACTATGATAGGAAAGGAGT 59.344 45.833 4.27 0.00 0.00 3.85
3796 4657 4.656112 ACCACCACTATGATAGGAAAGGAG 59.344 45.833 4.27 0.00 0.00 3.69
3797 4658 4.631234 ACCACCACTATGATAGGAAAGGA 58.369 43.478 4.27 0.00 0.00 3.36
3798 4659 4.656112 AGACCACCACTATGATAGGAAAGG 59.344 45.833 4.27 3.51 0.00 3.11
3799 4660 5.363868 TGAGACCACCACTATGATAGGAAAG 59.636 44.000 4.27 0.00 0.00 2.62
3800 4661 5.277250 TGAGACCACCACTATGATAGGAAA 58.723 41.667 4.27 0.00 0.00 3.13
3801 4662 4.878968 TGAGACCACCACTATGATAGGAA 58.121 43.478 4.27 0.00 0.00 3.36
3802 4663 4.536295 TGAGACCACCACTATGATAGGA 57.464 45.455 4.27 0.00 0.00 2.94
3803 4664 5.815233 ATTGAGACCACCACTATGATAGG 57.185 43.478 4.27 0.00 0.00 2.57
3804 4665 6.484643 CCAAATTGAGACCACCACTATGATAG 59.515 42.308 0.00 0.00 0.00 2.08
3805 4666 6.069673 ACCAAATTGAGACCACCACTATGATA 60.070 38.462 0.00 0.00 0.00 2.15
3806 4667 5.195940 CCAAATTGAGACCACCACTATGAT 58.804 41.667 0.00 0.00 0.00 2.45
3807 4668 4.042809 ACCAAATTGAGACCACCACTATGA 59.957 41.667 0.00 0.00 0.00 2.15
3808 4669 4.335416 ACCAAATTGAGACCACCACTATG 58.665 43.478 0.00 0.00 0.00 2.23
3809 4670 4.657814 ACCAAATTGAGACCACCACTAT 57.342 40.909 0.00 0.00 0.00 2.12
3810 4671 4.447138 AACCAAATTGAGACCACCACTA 57.553 40.909 0.00 0.00 0.00 2.74
3811 4672 3.312736 AACCAAATTGAGACCACCACT 57.687 42.857 0.00 0.00 0.00 4.00
3812 4673 3.383185 TGAAACCAAATTGAGACCACCAC 59.617 43.478 0.00 0.00 0.00 4.16
3813 4674 3.636679 TGAAACCAAATTGAGACCACCA 58.363 40.909 0.00 0.00 0.00 4.17
3814 4675 4.664150 TTGAAACCAAATTGAGACCACC 57.336 40.909 0.00 0.00 0.00 4.61
3957 4818 3.528370 CGCGGGTACTCAGGAGGG 61.528 72.222 0.00 0.00 0.00 4.30
3991 4852 2.056906 GAGGTGGGTGTGAAGTGCCT 62.057 60.000 0.00 0.00 0.00 4.75
4010 4872 6.455647 GTGATAAAGTTGAAAAAGAAGGGGG 58.544 40.000 0.00 0.00 0.00 5.40
4152 5022 0.629058 AACCCCACCAAGTGTTCAGT 59.371 50.000 0.00 0.00 0.00 3.41
4210 5080 2.885135 ATGGAGATCAACACCTGCAA 57.115 45.000 0.00 0.00 34.52 4.08
4230 5100 1.144708 TCATTCAACACAAGGCCCTGA 59.855 47.619 8.77 0.00 0.00 3.86
4300 5170 3.328505 CCATGGAATGCTTTTCACCAAC 58.671 45.455 5.56 0.00 44.97 3.77
4433 5304 6.535150 TCTTTTACGCCATGAAGAGTAATCAG 59.465 38.462 0.00 0.00 0.00 2.90
4436 5307 7.103641 TCTTCTTTTACGCCATGAAGAGTAAT 58.896 34.615 0.00 0.00 38.40 1.89
4592 5464 9.573133 AAAAAGAATTTACGCTTCCATATTCAG 57.427 29.630 0.00 0.00 37.28 3.02
4684 5556 5.415701 AGATGGCAGGTACAATTGTTACAAG 59.584 40.000 17.78 8.06 0.00 3.16
4738 5610 4.629200 CAGATTGTCTAACTTCACAGAGCC 59.371 45.833 0.00 0.00 0.00 4.70
4782 5654 6.507958 TTCATGTCACAACTCACAAGAAAA 57.492 33.333 0.00 0.00 29.65 2.29
4889 5761 6.764308 ATGGTGGTGATATTTCAGAAACTG 57.236 37.500 0.00 0.00 30.85 3.16
5007 6040 0.310543 TGAAGAACAATGCACACGCC 59.689 50.000 0.00 0.00 37.32 5.68
5008 6041 1.980844 CATGAAGAACAATGCACACGC 59.019 47.619 0.00 0.00 39.24 5.34
5060 6093 0.109597 GGTCTCAAAATGCTGCACCG 60.110 55.000 3.57 0.00 0.00 4.94
5193 6226 1.904287 AACCGGCAAAGCACTTATCA 58.096 45.000 0.00 0.00 0.00 2.15
5282 6315 0.388649 CGTGTCTCCCTTCAGTTCCG 60.389 60.000 0.00 0.00 0.00 4.30
5377 6416 2.430694 ACACACCCTTTTTCTTCCAAGC 59.569 45.455 0.00 0.00 0.00 4.01
5380 6419 5.894393 TGATTTACACACCCTTTTTCTTCCA 59.106 36.000 0.00 0.00 0.00 3.53
5416 6455 5.845065 ACCCCTAGAGTTATTCCATACCTTC 59.155 44.000 0.00 0.00 0.00 3.46
5428 6467 5.145564 GTCATACCATCACCCCTAGAGTTA 58.854 45.833 0.00 0.00 0.00 2.24
5431 6470 2.900546 GGTCATACCATCACCCCTAGAG 59.099 54.545 0.00 0.00 38.42 2.43
5452 6491 6.292381 GCTAAGCTACAACCAATTCATCTACG 60.292 42.308 0.00 0.00 0.00 3.51
5472 6511 1.197721 CCAGAAACGGCAAGTGCTAAG 59.802 52.381 2.85 0.00 41.70 2.18
5477 6516 1.593196 TCTTCCAGAAACGGCAAGTG 58.407 50.000 0.00 0.00 0.00 3.16
5479 6518 2.426522 TCATCTTCCAGAAACGGCAAG 58.573 47.619 0.00 0.00 0.00 4.01
5555 6594 1.517242 ACTGAAGCTAAGTGCAGCAC 58.483 50.000 18.55 18.55 44.35 4.40
5558 6597 1.198637 GGCAACTGAAGCTAAGTGCAG 59.801 52.381 17.50 10.46 45.94 4.41
5559 6598 1.238439 GGCAACTGAAGCTAAGTGCA 58.762 50.000 17.50 0.00 45.94 4.57
5583 6623 5.798434 CACATGCATGTTCTATTCACACTTG 59.202 40.000 29.48 9.49 39.39 3.16
5602 6643 1.887854 TGGTCATCAAAGTGGCACATG 59.112 47.619 21.41 17.71 44.52 3.21
5603 6644 2.165167 CTGGTCATCAAAGTGGCACAT 58.835 47.619 21.41 4.57 44.52 3.21
5604 6645 1.608055 CTGGTCATCAAAGTGGCACA 58.392 50.000 21.41 0.00 0.00 4.57
5605 6646 0.242017 GCTGGTCATCAAAGTGGCAC 59.758 55.000 10.29 10.29 0.00 5.01
5623 6664 8.447787 AACATAAAATAAACATCGAGTTGTGC 57.552 30.769 0.00 0.00 41.19 4.57
5636 6677 9.995003 AGGCTGAAACATGAAACATAAAATAAA 57.005 25.926 0.00 0.00 0.00 1.40
5637 6678 9.421806 CAGGCTGAAACATGAAACATAAAATAA 57.578 29.630 9.42 0.00 0.00 1.40
5638 6679 8.801299 TCAGGCTGAAACATGAAACATAAAATA 58.199 29.630 16.28 0.00 0.00 1.40
5639 6680 7.669427 TCAGGCTGAAACATGAAACATAAAAT 58.331 30.769 16.28 0.00 0.00 1.82
5640 6681 7.048629 TCAGGCTGAAACATGAAACATAAAA 57.951 32.000 16.28 0.00 0.00 1.52
5641 6682 6.647334 TCAGGCTGAAACATGAAACATAAA 57.353 33.333 16.28 0.00 0.00 1.40
5642 6683 6.839124 ATCAGGCTGAAACATGAAACATAA 57.161 33.333 22.84 0.00 0.00 1.90
5643 6684 6.839124 AATCAGGCTGAAACATGAAACATA 57.161 33.333 22.84 0.00 0.00 2.29
5644 6685 5.733620 AATCAGGCTGAAACATGAAACAT 57.266 34.783 22.84 0.00 0.00 2.71
5645 6686 6.647334 TTAATCAGGCTGAAACATGAAACA 57.353 33.333 22.84 0.00 0.00 2.83
5646 6687 7.315142 TGATTAATCAGGCTGAAACATGAAAC 58.685 34.615 22.84 3.89 32.11 2.78
5647 6688 7.465353 TGATTAATCAGGCTGAAACATGAAA 57.535 32.000 22.84 8.36 32.11 2.69
5648 6689 7.465353 TTGATTAATCAGGCTGAAACATGAA 57.535 32.000 22.84 10.62 38.19 2.57
5649 6690 7.465353 TTTGATTAATCAGGCTGAAACATGA 57.535 32.000 22.84 4.81 38.19 3.07
5650 6691 7.816031 ACTTTTGATTAATCAGGCTGAAACATG 59.184 33.333 22.84 11.65 38.19 3.21
5651 6692 7.899973 ACTTTTGATTAATCAGGCTGAAACAT 58.100 30.769 22.84 12.92 38.19 2.71
5652 6693 7.288810 ACTTTTGATTAATCAGGCTGAAACA 57.711 32.000 22.84 13.61 38.19 2.83
5653 6694 9.691362 TTTACTTTTGATTAATCAGGCTGAAAC 57.309 29.630 22.84 11.29 38.19 2.78
5657 6698 9.455847 GCTATTTACTTTTGATTAATCAGGCTG 57.544 33.333 17.28 8.58 38.19 4.85
5658 6699 9.189156 TGCTATTTACTTTTGATTAATCAGGCT 57.811 29.630 17.28 5.49 38.19 4.58
5659 6700 9.801873 TTGCTATTTACTTTTGATTAATCAGGC 57.198 29.630 17.28 10.44 38.19 4.85
5673 6714 9.660180 TCCTTGTTTTTGTTTTGCTATTTACTT 57.340 25.926 0.00 0.00 0.00 2.24
5674 6715 9.830975 ATCCTTGTTTTTGTTTTGCTATTTACT 57.169 25.926 0.00 0.00 0.00 2.24
5688 6729 8.576442 ACTGAACCTGTAATATCCTTGTTTTTG 58.424 33.333 0.00 0.00 0.00 2.44
5700 6741 4.935205 GTGCACATGACTGAACCTGTAATA 59.065 41.667 13.17 0.00 0.00 0.98
5701 6742 3.753272 GTGCACATGACTGAACCTGTAAT 59.247 43.478 13.17 0.00 0.00 1.89
5702 6743 3.138304 GTGCACATGACTGAACCTGTAA 58.862 45.455 13.17 0.00 0.00 2.41
5703 6744 2.103941 TGTGCACATGACTGAACCTGTA 59.896 45.455 17.42 0.00 0.00 2.74
5705 6746 1.534163 CTGTGCACATGACTGAACCTG 59.466 52.381 22.00 0.00 0.00 4.00
5707 6748 1.532868 GACTGTGCACATGACTGAACC 59.467 52.381 22.00 0.21 0.00 3.62
5708 6749 2.487934 AGACTGTGCACATGACTGAAC 58.512 47.619 22.00 8.16 0.00 3.18
5820 6878 4.557205 AGTTTTGTACCTCTGCTCGTAAG 58.443 43.478 0.00 0.00 0.00 2.34
5821 6879 4.595762 AGTTTTGTACCTCTGCTCGTAA 57.404 40.909 0.00 0.00 0.00 3.18
5822 6880 4.038282 TCAAGTTTTGTACCTCTGCTCGTA 59.962 41.667 0.00 0.00 0.00 3.43
5823 6881 3.131396 CAAGTTTTGTACCTCTGCTCGT 58.869 45.455 0.00 0.00 0.00 4.18
5824 6882 3.390135 TCAAGTTTTGTACCTCTGCTCG 58.610 45.455 0.00 0.00 0.00 5.03
5825 6883 6.166982 ACTATCAAGTTTTGTACCTCTGCTC 58.833 40.000 0.00 0.00 29.00 4.26
5826 6884 6.115448 ACTATCAAGTTTTGTACCTCTGCT 57.885 37.500 0.00 0.00 29.00 4.24
5827 6885 6.426937 TGAACTATCAAGTTTTGTACCTCTGC 59.573 38.462 0.00 0.00 46.09 4.26
5828 6886 7.657761 ACTGAACTATCAAGTTTTGTACCTCTG 59.342 37.037 0.00 0.00 46.09 3.35
5829 6887 7.736893 ACTGAACTATCAAGTTTTGTACCTCT 58.263 34.615 0.00 0.00 46.09 3.69
5830 6888 7.964604 ACTGAACTATCAAGTTTTGTACCTC 57.035 36.000 0.00 0.00 46.09 3.85
5831 6889 9.490379 CTAACTGAACTATCAAGTTTTGTACCT 57.510 33.333 0.00 0.00 46.09 3.08
5832 6890 8.228464 GCTAACTGAACTATCAAGTTTTGTACC 58.772 37.037 0.00 0.00 46.09 3.34
5833 6891 8.770828 TGCTAACTGAACTATCAAGTTTTGTAC 58.229 33.333 0.00 0.00 46.09 2.90
5834 6892 8.896320 TGCTAACTGAACTATCAAGTTTTGTA 57.104 30.769 0.00 0.00 46.09 2.41
5835 6893 7.520614 GCTGCTAACTGAACTATCAAGTTTTGT 60.521 37.037 0.00 0.00 46.09 2.83
5836 6894 6.798959 GCTGCTAACTGAACTATCAAGTTTTG 59.201 38.462 0.00 0.00 46.09 2.44
5837 6895 6.072452 GGCTGCTAACTGAACTATCAAGTTTT 60.072 38.462 0.00 0.00 46.09 2.43
5838 6896 5.412904 GGCTGCTAACTGAACTATCAAGTTT 59.587 40.000 0.00 0.00 46.09 2.66
5853 6911 2.418628 TCATTTGCTAACGGCTGCTAAC 59.581 45.455 0.00 0.00 42.39 2.34
6083 7151 4.269523 AGAGCGTGGCCTTGGCAA 62.270 61.111 14.04 0.00 40.46 4.52
6241 7309 2.066393 CCCCCAGAAGAGGATCGCA 61.066 63.158 0.00 0.00 42.67 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.