Multiple sequence alignment - TraesCS3D01G164000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G164000 chr3D 100.000 8304 0 0 1 8304 135378570 135386873 0.000000e+00 15335.0
1 TraesCS3D01G164000 chr3D 84.880 291 43 1 294 584 449280991 449281280 8.150000e-75 292.0
2 TraesCS3D01G164000 chr3D 96.104 77 3 0 6817 6893 601221761 601221837 8.750000e-25 126.0
3 TraesCS3D01G164000 chr3D 96.104 77 3 0 6817 6893 609983898 609983822 8.750000e-25 126.0
4 TraesCS3D01G164000 chr3B 96.151 3196 88 17 3601 6773 193617797 193620980 0.000000e+00 5188.0
5 TraesCS3D01G164000 chr3B 92.466 1752 72 17 1 1715 193613734 193615462 0.000000e+00 2449.0
6 TraesCS3D01G164000 chr3B 93.573 1447 60 21 6875 8304 193620978 193622408 0.000000e+00 2126.0
7 TraesCS3D01G164000 chr3B 97.697 1042 23 1 2544 3585 193615645 193616685 0.000000e+00 1790.0
8 TraesCS3D01G164000 chr3B 86.102 295 40 1 291 584 99675563 99675857 4.840000e-82 316.0
9 TraesCS3D01G164000 chr3B 93.578 109 6 1 2319 2426 193615466 193615574 2.400000e-35 161.0
10 TraesCS3D01G164000 chr3B 91.228 114 10 0 2434 2547 5951443 5951330 1.120000e-33 156.0
11 TraesCS3D01G164000 chr3B 97.778 90 2 0 2179 2268 70294020 70293931 1.120000e-33 156.0
12 TraesCS3D01G164000 chr3A 95.556 3195 99 20 3599 6773 150721434 150724605 0.000000e+00 5073.0
13 TraesCS3D01G164000 chr3A 93.692 1617 61 16 586 2186 150718218 150719809 0.000000e+00 2383.0
14 TraesCS3D01G164000 chr3A 98.678 1059 14 0 2544 3602 150720038 150721096 0.000000e+00 1879.0
15 TraesCS3D01G164000 chr3A 92.025 790 33 12 6875 7658 150724603 150725368 0.000000e+00 1083.0
16 TraesCS3D01G164000 chr3A 94.585 277 11 3 8029 8304 150725529 150725802 7.700000e-115 425.0
17 TraesCS3D01G164000 chr3A 90.301 299 11 7 1 292 150717933 150718220 7.870000e-100 375.0
18 TraesCS3D01G164000 chr3A 95.062 162 7 1 2266 2426 150719806 150719967 3.850000e-63 254.0
19 TraesCS3D01G164000 chr3A 95.062 81 2 1 2373 2451 150719960 150720040 8.750000e-25 126.0
20 TraesCS3D01G164000 chr6D 88.514 296 32 1 291 584 5905866 5906161 2.850000e-94 357.0
21 TraesCS3D01G164000 chr6D 87.629 291 31 4 293 578 5905100 5905390 4.800000e-87 333.0
22 TraesCS3D01G164000 chr6D 93.421 76 5 0 6818 6893 157930495 157930420 6.810000e-21 113.0
23 TraesCS3D01G164000 chr6D 93.243 74 5 0 6817 6890 119139174 119139247 8.810000e-20 110.0
24 TraesCS3D01G164000 chr6D 92.208 77 5 1 6817 6893 469560164 469560239 3.170000e-19 108.0
25 TraesCS3D01G164000 chr6D 92.000 75 6 0 6817 6891 158562524 158562598 1.140000e-18 106.0
26 TraesCS3D01G164000 chr6D 88.889 81 8 1 6817 6896 128910388 128910468 1.910000e-16 99.0
27 TraesCS3D01G164000 chr6D 88.732 71 6 2 6817 6886 158562608 158562539 1.490000e-12 86.1
28 TraesCS3D01G164000 chr6B 87.960 299 32 3 289 584 636485830 636486127 4.770000e-92 350.0
29 TraesCS3D01G164000 chr6B 87.838 296 31 3 291 582 356961167 356960873 7.980000e-90 342.0
30 TraesCS3D01G164000 chr6B 89.916 119 7 4 2437 2554 130325759 130325873 1.870000e-31 148.0
31 TraesCS3D01G164000 chr2D 86.288 299 40 1 291 588 483630204 483630502 2.890000e-84 324.0
32 TraesCS3D01G164000 chr2D 91.509 106 5 3 2172 2273 30255258 30255363 8.690000e-30 143.0
33 TraesCS3D01G164000 chr2D 96.104 77 3 0 6817 6893 120106046 120105970 8.750000e-25 126.0
34 TraesCS3D01G164000 chr4D 86.184 304 29 3 283 584 358603182 358603474 4.840000e-82 316.0
35 TraesCS3D01G164000 chr4D 89.076 119 12 1 2429 2547 177433321 177433204 6.720000e-31 147.0
36 TraesCS3D01G164000 chr4D 92.208 77 6 0 6817 6893 454429030 454429106 8.810000e-20 110.0
37 TraesCS3D01G164000 chr4D 92.105 76 6 0 6818 6893 429472264 429472339 3.170000e-19 108.0
38 TraesCS3D01G164000 chr5D 94.393 107 6 0 2441 2547 228447067 228446961 1.850000e-36 165.0
39 TraesCS3D01G164000 chr5D 94.845 97 4 1 2174 2269 240428136 240428040 5.190000e-32 150.0
40 TraesCS3D01G164000 chr5D 94.805 77 4 0 6817 6893 139441006 139440930 4.070000e-23 121.0
41 TraesCS3D01G164000 chr7B 96.907 97 3 0 2450 2546 134634121 134634217 6.670000e-36 163.0
42 TraesCS3D01G164000 chr7B 96.104 77 3 0 6817 6893 162120902 162120826 8.750000e-25 126.0
43 TraesCS3D01G164000 chr7B 94.805 77 4 0 6817 6893 310413155 310413079 4.070000e-23 121.0
44 TraesCS3D01G164000 chr2A 92.727 110 6 2 2440 2549 728602559 728602666 3.100000e-34 158.0
45 TraesCS3D01G164000 chr2A 90.351 114 11 0 2434 2547 79162422 79162535 5.190000e-32 150.0
46 TraesCS3D01G164000 chr7D 92.523 107 7 1 2450 2556 126648472 126648577 1.440000e-32 152.0
47 TraesCS3D01G164000 chr7D 96.739 92 2 1 2183 2273 426558983 426558892 1.440000e-32 152.0
48 TraesCS3D01G164000 chr7D 90.517 116 8 3 2446 2559 161403542 161403428 5.190000e-32 150.0
49 TraesCS3D01G164000 chr7D 94.565 92 5 0 2183 2274 519264630 519264539 8.690000e-30 143.0
50 TraesCS3D01G164000 chr6A 94.792 96 4 1 2179 2274 557970135 557970041 1.870000e-31 148.0
51 TraesCS3D01G164000 chr6A 95.946 74 3 0 6820 6893 213872193 213872266 4.070000e-23 121.0
52 TraesCS3D01G164000 chr4A 93.939 99 4 2 2174 2271 556768048 556767951 1.870000e-31 148.0
53 TraesCS3D01G164000 chr5A 94.681 94 5 0 2174 2267 698639632 698639725 6.720000e-31 147.0
54 TraesCS3D01G164000 chr5A 88.235 119 10 3 2181 2296 616651911 616652028 1.120000e-28 139.0
55 TraesCS3D01G164000 chr5A 96.104 77 3 0 6817 6893 174594031 174594107 8.750000e-25 126.0
56 TraesCS3D01G164000 chr1D 94.118 85 4 1 6817 6900 143955476 143955560 2.430000e-25 128.0
57 TraesCS3D01G164000 chr1D 93.506 77 5 0 6817 6893 226457710 226457634 1.890000e-21 115.0
58 TraesCS3D01G164000 chr1B 94.118 85 4 1 6817 6900 193283070 193283154 2.430000e-25 128.0
59 TraesCS3D01G164000 chr5B 96.104 77 3 0 6817 6893 166379092 166379168 8.750000e-25 126.0
60 TraesCS3D01G164000 chr4B 96.104 77 3 0 6817 6893 511163799 511163723 8.750000e-25 126.0
61 TraesCS3D01G164000 chr4B 94.737 76 3 1 6818 6893 527285776 527285850 5.270000e-22 117.0
62 TraesCS3D01G164000 chr1A 94.805 77 2 2 6817 6893 460934482 460934556 1.460000e-22 119.0
63 TraesCS3D01G164000 chr1A 93.506 77 5 0 6817 6893 293720627 293720551 1.890000e-21 115.0
64 TraesCS3D01G164000 chrUn 92.500 80 5 1 6817 6895 15904011 15903932 6.810000e-21 113.0
65 TraesCS3D01G164000 chrUn 89.333 75 6 2 6817 6890 15903927 15904000 8.870000e-15 93.5
66 TraesCS3D01G164000 chrUn 87.143 70 9 0 6817 6886 82595237 82595306 6.910000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G164000 chr3D 135378570 135386873 8303 False 15335.00 15335 100.000000 1 8304 1 chr3D.!!$F1 8303
1 TraesCS3D01G164000 chr3B 193613734 193622408 8674 False 2342.80 5188 94.693000 1 8304 5 chr3B.!!$F2 8303
2 TraesCS3D01G164000 chr3A 150717933 150725802 7869 False 1449.75 5073 94.370125 1 8304 8 chr3A.!!$F1 8303
3 TraesCS3D01G164000 chr6D 5905100 5906161 1061 False 345.00 357 88.071500 291 584 2 chr6D.!!$F5 293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 618 1.115326 ACCAAAGAAGGCCCAAGTGC 61.115 55.000 0.00 0.00 0.00 4.40 F
1746 1806 0.402121 AACTCTCTCTGCCCCCAAAC 59.598 55.000 0.00 0.00 0.00 2.93 F
2464 2577 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37 F
3732 4960 0.036105 TGAGCATGTGTACCCAGCAG 60.036 55.000 0.00 0.00 0.00 4.24 F
3783 5011 0.461693 GCTAGCAGCAGTCTCCCAAG 60.462 60.000 10.63 0.00 41.89 3.61 F
3875 5103 0.911769 TCTGGCAGGGGTTAGTGATG 59.088 55.000 15.73 0.00 0.00 3.07 F
4905 6148 2.271497 CCCAAGCTCAGCCTGGAG 59.729 66.667 16.66 2.09 42.28 3.86 F
5745 6993 1.169661 TTGCGAACCATGTTCGGCTT 61.170 50.000 25.18 0.00 41.76 4.35 F
6472 7725 2.523245 TGCCTGCATTTATGTTGGTGA 58.477 42.857 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 2315 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37 R
3732 4960 0.107654 GTATCAGGACCAGTGTGGCC 60.108 60.000 0.00 0.00 42.67 5.36 R
3758 4986 0.391395 AGACTGCTGCTAGCTGCTTG 60.391 55.000 36.36 30.48 42.95 4.01 R
4543 5786 1.265095 CGCTGCTTTCTTGAGCTGAAA 59.735 47.619 0.00 0.00 42.23 2.69 R
5471 6718 1.962412 CATTGCGCGTGTACAATTGT 58.038 45.000 16.68 16.68 34.32 2.71 R
5476 6723 2.553770 GTGCATTGCGCGTGTACA 59.446 55.556 22.32 7.28 46.97 2.90 R
6661 7914 2.224042 TGTCCACACACTTGTAGCTCTG 60.224 50.000 0.00 0.00 33.30 3.35 R
6968 8236 0.187606 ATGATGCAGCACCCATCCAT 59.812 50.000 6.89 0.00 38.61 3.41 R
7703 8977 1.068895 TGCCAAACAGCACAAAGGATG 59.931 47.619 0.00 0.00 38.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.269517 CCGAGGATTCTCAGCTGTAGC 60.270 57.143 14.67 3.34 39.95 3.58
107 108 1.681793 GGCTCTCGCTGTCATACCTTA 59.318 52.381 0.00 0.00 36.09 2.69
124 125 3.314357 ACCTTAAGTTTTTGACACGCCTC 59.686 43.478 0.97 0.00 0.00 4.70
292 307 7.741027 TCGAGTAGACTGGTTATATGTAAGG 57.259 40.000 0.00 0.00 0.00 2.69
372 387 9.547279 AGATAAAATTTCTATGGAACCCTTTGT 57.453 29.630 0.00 0.00 0.00 2.83
390 405 7.147391 ACCCTTTGTTTTGTAGGAATGGATTTT 60.147 33.333 0.00 0.00 0.00 1.82
494 512 7.934855 ATCCTATGCATTAAATGACATCTCC 57.065 36.000 3.54 0.00 32.25 3.71
584 612 2.025321 TCCTATGAACCAAAGAAGGCCC 60.025 50.000 0.00 0.00 0.00 5.80
590 618 1.115326 ACCAAAGAAGGCCCAAGTGC 61.115 55.000 0.00 0.00 0.00 4.40
628 656 2.496817 CTGTCCTACTGGAGCGGC 59.503 66.667 0.00 0.00 44.16 6.53
1261 1310 2.028484 TCGTGTTGACCTGACGGC 59.972 61.111 0.00 0.00 33.88 5.68
1262 1311 3.403057 CGTGTTGACCTGACGGCG 61.403 66.667 4.80 4.80 0.00 6.46
1263 1312 3.041940 GTGTTGACCTGACGGCGG 61.042 66.667 13.24 0.00 0.00 6.13
1306 1356 2.004489 GGCGACGACGACGATGATC 61.004 63.158 22.94 4.95 42.66 2.92
1321 1371 5.506644 CGATGATCGTCCAAGTATTCATG 57.493 43.478 6.68 0.00 34.72 3.07
1322 1372 4.143242 CGATGATCGTCCAAGTATTCATGC 60.143 45.833 6.68 0.00 34.72 4.06
1407 1457 7.196331 GTGGTTATGAATTTGTGATTCCTAGC 58.804 38.462 0.00 0.00 0.00 3.42
1474 1524 5.741982 GTGTCCAACACTGTTTATTTGTCAC 59.258 40.000 3.03 0.00 45.27 3.67
1535 1585 5.859205 AGAATGGACATAGGAAATTTGGC 57.141 39.130 0.00 0.00 0.00 4.52
1580 1640 3.840991 TGGATGGCTATCGTACCTACTT 58.159 45.455 3.76 0.00 33.98 2.24
1600 1660 1.003118 TGTAGTGAGGTGTGGCAATCC 59.997 52.381 0.00 0.00 0.00 3.01
1646 1706 3.498082 GTTGCCGTTCCATATGTGTTTC 58.502 45.455 1.24 0.00 0.00 2.78
1654 1714 6.183360 CCGTTCCATATGTGTTTCTTGACTAC 60.183 42.308 1.24 0.00 0.00 2.73
1719 1779 1.899437 TAGCTACTGCCACCCTGCAC 61.899 60.000 0.00 0.00 40.80 4.57
1730 1790 1.072331 CACCCTGCACACCTTCTAACT 59.928 52.381 0.00 0.00 0.00 2.24
1736 1796 3.501349 TGCACACCTTCTAACTCTCTCT 58.499 45.455 0.00 0.00 0.00 3.10
1746 1806 0.402121 AACTCTCTCTGCCCCCAAAC 59.598 55.000 0.00 0.00 0.00 2.93
1825 1885 5.690464 AGCTCCTAATGATGGATATCACC 57.310 43.478 4.83 0.00 45.54 4.02
1834 1894 3.574396 TGATGGATATCACCGTCCTTCTC 59.426 47.826 4.83 0.00 43.17 2.87
1835 1895 3.314307 TGGATATCACCGTCCTTCTCT 57.686 47.619 4.83 0.00 35.49 3.10
1836 1896 2.959030 TGGATATCACCGTCCTTCTCTG 59.041 50.000 4.83 0.00 35.49 3.35
1837 1897 2.288518 GGATATCACCGTCCTTCTCTGC 60.289 54.545 4.83 0.00 0.00 4.26
1838 1898 2.145397 TATCACCGTCCTTCTCTGCT 57.855 50.000 0.00 0.00 0.00 4.24
1839 1899 1.270907 ATCACCGTCCTTCTCTGCTT 58.729 50.000 0.00 0.00 0.00 3.91
1840 1900 0.603569 TCACCGTCCTTCTCTGCTTC 59.396 55.000 0.00 0.00 0.00 3.86
1882 1942 1.251251 GTCCATCCAACTTGCTTGCT 58.749 50.000 0.00 0.00 0.00 3.91
1899 1959 1.003928 TGCTCGTATCCGCCCTAGATA 59.996 52.381 0.00 0.00 0.00 1.98
1923 1983 4.139038 TGGGTTTTAGAGTAACACTTGCC 58.861 43.478 0.00 0.00 30.25 4.52
1924 1984 3.187842 GGGTTTTAGAGTAACACTTGCCG 59.812 47.826 0.00 0.00 0.00 5.69
1930 1994 3.508762 AGAGTAACACTTGCCGATTACG 58.491 45.455 0.00 0.00 33.63 3.18
2009 2073 1.846007 TGAGTGTTTTGTTGCACCCT 58.154 45.000 0.00 0.00 36.35 4.34
2187 2251 6.903419 GCTAATGGCATTTAGAACATACTCC 58.097 40.000 19.21 0.00 41.35 3.85
2188 2252 6.072452 GCTAATGGCATTTAGAACATACTCCC 60.072 42.308 19.21 0.00 41.35 4.30
2189 2253 5.653255 ATGGCATTTAGAACATACTCCCT 57.347 39.130 0.00 0.00 0.00 4.20
2190 2254 5.036117 TGGCATTTAGAACATACTCCCTC 57.964 43.478 0.00 0.00 0.00 4.30
2191 2255 4.141482 TGGCATTTAGAACATACTCCCTCC 60.141 45.833 0.00 0.00 0.00 4.30
2192 2256 4.141482 GGCATTTAGAACATACTCCCTCCA 60.141 45.833 0.00 0.00 0.00 3.86
2193 2257 5.456763 GGCATTTAGAACATACTCCCTCCAT 60.457 44.000 0.00 0.00 0.00 3.41
2194 2258 5.703130 GCATTTAGAACATACTCCCTCCATC 59.297 44.000 0.00 0.00 0.00 3.51
2195 2259 5.888982 TTTAGAACATACTCCCTCCATCC 57.111 43.478 0.00 0.00 0.00 3.51
2196 2260 2.695585 AGAACATACTCCCTCCATCCC 58.304 52.381 0.00 0.00 0.00 3.85
2197 2261 2.022035 AGAACATACTCCCTCCATCCCA 60.022 50.000 0.00 0.00 0.00 4.37
2198 2262 2.823460 ACATACTCCCTCCATCCCAT 57.177 50.000 0.00 0.00 0.00 4.00
2199 2263 3.943269 ACATACTCCCTCCATCCCATA 57.057 47.619 0.00 0.00 0.00 2.74
2200 2264 4.228237 ACATACTCCCTCCATCCCATAA 57.772 45.455 0.00 0.00 0.00 1.90
2201 2265 4.779386 ACATACTCCCTCCATCCCATAAT 58.221 43.478 0.00 0.00 0.00 1.28
2202 2266 5.927465 ACATACTCCCTCCATCCCATAATA 58.073 41.667 0.00 0.00 0.00 0.98
2203 2267 6.524996 ACATACTCCCTCCATCCCATAATAT 58.475 40.000 0.00 0.00 0.00 1.28
2204 2268 7.671711 ACATACTCCCTCCATCCCATAATATA 58.328 38.462 0.00 0.00 0.00 0.86
2205 2269 8.135586 ACATACTCCCTCCATCCCATAATATAA 58.864 37.037 0.00 0.00 0.00 0.98
2206 2270 8.654997 CATACTCCCTCCATCCCATAATATAAG 58.345 40.741 0.00 0.00 0.00 1.73
2207 2271 6.826727 ACTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
2208 2272 6.905776 ACTCCCTCCATCCCATAATATAAGAG 59.094 42.308 0.00 0.00 0.00 2.85
2209 2273 5.667626 TCCCTCCATCCCATAATATAAGAGC 59.332 44.000 0.00 0.00 0.00 4.09
2210 2274 5.453903 CCCTCCATCCCATAATATAAGAGCG 60.454 48.000 0.00 0.00 0.00 5.03
2211 2275 5.129485 CCTCCATCCCATAATATAAGAGCGT 59.871 44.000 0.00 0.00 0.00 5.07
2212 2276 6.352222 CCTCCATCCCATAATATAAGAGCGTT 60.352 42.308 0.00 0.00 0.00 4.84
2213 2277 7.016153 TCCATCCCATAATATAAGAGCGTTT 57.984 36.000 0.00 0.00 0.00 3.60
2214 2278 7.458397 TCCATCCCATAATATAAGAGCGTTTT 58.542 34.615 0.00 0.00 0.00 2.43
2215 2279 7.942341 TCCATCCCATAATATAAGAGCGTTTTT 59.058 33.333 0.00 0.00 0.00 1.94
2216 2280 8.023128 CCATCCCATAATATAAGAGCGTTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
2217 2281 8.783093 CATCCCATAATATAAGAGCGTTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
2218 2282 8.149973 TCCCATAATATAAGAGCGTTTTTGAC 57.850 34.615 0.00 0.00 0.00 3.18
2219 2283 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2220 2284 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2221 2285 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2224 2288 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
2225 2289 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2226 2290 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2227 2291 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
2228 2292 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
2229 2293 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
2242 2306 7.433873 CACTACACTAGTGTAAAATACGCTC 57.566 40.000 30.31 0.00 45.75 5.03
2243 2307 7.249147 CACTACACTAGTGTAAAATACGCTCT 58.751 38.462 30.31 7.90 45.75 4.09
2244 2308 7.754027 CACTACACTAGTGTAAAATACGCTCTT 59.246 37.037 30.31 7.50 45.75 2.85
2245 2309 8.950210 ACTACACTAGTGTAAAATACGCTCTTA 58.050 33.333 30.31 10.42 45.75 2.10
2246 2310 9.947669 CTACACTAGTGTAAAATACGCTCTTAT 57.052 33.333 30.31 6.56 45.75 1.73
2257 2321 8.475331 AAAATACGCTCTTATATTATGGGACG 57.525 34.615 0.00 0.00 0.00 4.79
2258 2322 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2259 2323 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2260 2324 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2261 2325 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2262 2326 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2263 2327 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2264 2328 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2265 2329 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2266 2330 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2267 2331 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2268 2332 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
2302 2366 3.433740 GGGTAGTGATCAACTCCAATCCC 60.434 52.174 0.00 0.00 40.56 3.85
2310 2374 5.191522 TGATCAACTCCAATCCCAGTGATAA 59.808 40.000 0.00 0.00 31.83 1.75
2393 2457 5.178067 GTGAACCAAATTTTGCTCAAGGATG 59.822 40.000 11.51 0.00 0.00 3.51
2399 2463 7.397192 ACCAAATTTTGCTCAAGGATGTAGTAT 59.603 33.333 3.50 0.00 0.00 2.12
2448 2561 9.241317 GAATGCTCCAGTGTATTTATTGAATTG 57.759 33.333 0.00 0.00 0.00 2.32
2449 2562 7.701539 TGCTCCAGTGTATTTATTGAATTGT 57.298 32.000 0.00 0.00 0.00 2.71
2450 2563 8.800370 TGCTCCAGTGTATTTATTGAATTGTA 57.200 30.769 0.00 0.00 0.00 2.41
2451 2564 8.673711 TGCTCCAGTGTATTTATTGAATTGTAC 58.326 33.333 0.00 0.00 0.00 2.90
2452 2565 8.893727 GCTCCAGTGTATTTATTGAATTGTACT 58.106 33.333 0.00 0.00 0.00 2.73
2454 2567 9.391006 TCCAGTGTATTTATTGAATTGTACTCC 57.609 33.333 0.00 0.00 0.00 3.85
2455 2568 8.621286 CCAGTGTATTTATTGAATTGTACTCCC 58.379 37.037 0.00 0.00 0.00 4.30
2456 2569 9.396022 CAGTGTATTTATTGAATTGTACTCCCT 57.604 33.333 0.00 0.00 0.00 4.20
2457 2570 9.614792 AGTGTATTTATTGAATTGTACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
2458 2571 8.837389 GTGTATTTATTGAATTGTACTCCCTCC 58.163 37.037 0.00 0.00 0.00 4.30
2459 2572 7.713507 TGTATTTATTGAATTGTACTCCCTCCG 59.286 37.037 0.00 0.00 0.00 4.63
2460 2573 5.687166 TTATTGAATTGTACTCCCTCCGT 57.313 39.130 0.00 0.00 0.00 4.69
2461 2574 3.604875 TTGAATTGTACTCCCTCCGTC 57.395 47.619 0.00 0.00 0.00 4.79
2462 2575 1.829222 TGAATTGTACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
2463 2576 1.138464 GAATTGTACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
2464 2577 0.042131 ATTGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2465 2578 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
2466 2579 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
2467 2580 1.201424 GTACTCCCTCCGTCCCAAAT 58.799 55.000 0.00 0.00 0.00 2.32
2468 2581 1.558294 GTACTCCCTCCGTCCCAAATT 59.442 52.381 0.00 0.00 0.00 1.82
2469 2582 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
2470 2583 2.271777 ACTCCCTCCGTCCCAAATTAA 58.728 47.619 0.00 0.00 0.00 1.40
2471 2584 2.238898 ACTCCCTCCGTCCCAAATTAAG 59.761 50.000 0.00 0.00 0.00 1.85
2472 2585 2.238898 CTCCCTCCGTCCCAAATTAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2473 2586 2.026636 TCCCTCCGTCCCAAATTAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2474 2587 2.290705 CCCTCCGTCCCAAATTAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2475 2588 3.007635 CCTCCGTCCCAAATTAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2476 2589 3.307480 CCTCCGTCCCAAATTAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2477 2590 3.933332 CTCCGTCCCAAATTAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2478 2591 3.325425 TCCGTCCCAAATTAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2479 2592 4.069304 CCGTCCCAAATTAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2480 2593 4.083484 CCGTCCCAAATTAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2481 2594 4.755123 CGTCCCAAATTAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2482 2595 5.238650 CGTCCCAAATTAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2483 2596 6.238648 CGTCCCAAATTAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2484 2597 6.918022 GTCCCAAATTAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2485 2598 6.605594 TCCCAAATTAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2486 2599 7.776030 TCCCAAATTAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2487 2600 7.860872 CCCAAATTAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2488 2601 8.621286 CCAAATTAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2493 2606 9.525409 TTAAGTGTCTCAACTTTGTACTAACTC 57.475 33.333 0.00 0.00 40.77 3.01
2494 2607 7.349412 AGTGTCTCAACTTTGTACTAACTCT 57.651 36.000 0.00 0.00 0.00 3.24
2495 2608 8.461249 AGTGTCTCAACTTTGTACTAACTCTA 57.539 34.615 0.00 0.00 0.00 2.43
2496 2609 8.569641 AGTGTCTCAACTTTGTACTAACTCTAG 58.430 37.037 0.00 0.00 0.00 2.43
2497 2610 8.351461 GTGTCTCAACTTTGTACTAACTCTAGT 58.649 37.037 0.00 0.00 41.43 2.57
2498 2611 8.350722 TGTCTCAACTTTGTACTAACTCTAGTG 58.649 37.037 0.00 0.00 38.85 2.74
2499 2612 8.351461 GTCTCAACTTTGTACTAACTCTAGTGT 58.649 37.037 0.00 0.00 38.85 3.55
2500 2613 9.565090 TCTCAACTTTGTACTAACTCTAGTGTA 57.435 33.333 0.00 0.00 38.85 2.90
2515 2628 8.703378 ACTCTAGTGTAAAGTTGTACTAAGGT 57.297 34.615 0.00 0.00 0.00 3.50
2516 2629 8.791675 ACTCTAGTGTAAAGTTGTACTAAGGTC 58.208 37.037 0.00 0.00 0.00 3.85
2517 2630 8.696043 TCTAGTGTAAAGTTGTACTAAGGTCA 57.304 34.615 0.00 0.00 0.00 4.02
2518 2631 9.135189 TCTAGTGTAAAGTTGTACTAAGGTCAA 57.865 33.333 0.00 0.00 0.00 3.18
2519 2632 9.408069 CTAGTGTAAAGTTGTACTAAGGTCAAG 57.592 37.037 0.00 0.00 0.00 3.02
2520 2633 8.015185 AGTGTAAAGTTGTACTAAGGTCAAGA 57.985 34.615 0.00 0.00 0.00 3.02
2521 2634 7.924947 AGTGTAAAGTTGTACTAAGGTCAAGAC 59.075 37.037 0.00 0.00 0.00 3.01
2522 2635 7.707893 GTGTAAAGTTGTACTAAGGTCAAGACA 59.292 37.037 2.29 0.00 0.00 3.41
2523 2636 7.707893 TGTAAAGTTGTACTAAGGTCAAGACAC 59.292 37.037 2.29 0.00 0.00 3.67
2524 2637 6.481434 AAGTTGTACTAAGGTCAAGACACT 57.519 37.500 2.29 0.00 0.00 3.55
2525 2638 6.481434 AGTTGTACTAAGGTCAAGACACTT 57.519 37.500 2.29 5.99 0.00 3.16
2526 2639 7.592885 AGTTGTACTAAGGTCAAGACACTTA 57.407 36.000 2.29 6.73 0.00 2.24
2527 2640 8.191534 AGTTGTACTAAGGTCAAGACACTTAT 57.808 34.615 2.29 2.45 0.00 1.73
2528 2641 8.648693 AGTTGTACTAAGGTCAAGACACTTATT 58.351 33.333 2.29 5.06 0.00 1.40
2529 2642 9.269453 GTTGTACTAAGGTCAAGACACTTATTT 57.731 33.333 2.29 2.03 0.00 1.40
2530 2643 9.841295 TTGTACTAAGGTCAAGACACTTATTTT 57.159 29.630 2.29 0.15 0.00 1.82
2531 2644 9.268268 TGTACTAAGGTCAAGACACTTATTTTG 57.732 33.333 2.29 0.34 0.00 2.44
2532 2645 7.745620 ACTAAGGTCAAGACACTTATTTTGG 57.254 36.000 2.29 0.05 0.00 3.28
2533 2646 6.715264 ACTAAGGTCAAGACACTTATTTTGGG 59.285 38.462 2.29 0.00 0.00 4.12
2534 2647 5.319043 AGGTCAAGACACTTATTTTGGGA 57.681 39.130 2.29 0.00 0.00 4.37
2535 2648 5.070685 AGGTCAAGACACTTATTTTGGGAC 58.929 41.667 2.29 0.00 0.00 4.46
2536 2649 4.083484 GGTCAAGACACTTATTTTGGGACG 60.083 45.833 2.29 0.00 0.00 4.79
2537 2650 4.069304 TCAAGACACTTATTTTGGGACGG 58.931 43.478 0.00 0.00 0.00 4.79
2538 2651 4.069304 CAAGACACTTATTTTGGGACGGA 58.931 43.478 0.00 0.00 0.00 4.69
2539 2652 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
2540 2653 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2541 2654 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2542 2655 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2571 2684 9.981460 ATGAAATTAGGTTTTCTGTAATCCTCT 57.019 29.630 0.57 0.00 37.22 3.69
2585 2698 6.177610 TGTAATCCTCTACCCAAAATGTCAC 58.822 40.000 0.00 0.00 0.00 3.67
2715 2828 6.660949 AGTTTGTTTAATAATCTGCTGGAGCT 59.339 34.615 0.00 0.00 42.66 4.09
2716 2829 6.441093 TTGTTTAATAATCTGCTGGAGCTG 57.559 37.500 0.00 0.00 42.66 4.24
2817 2930 1.615392 GCTGTTGGAAAATCTGGCACT 59.385 47.619 0.00 0.00 0.00 4.40
3225 3338 6.384015 TGACCACAGAAACTGATAGATATGGT 59.616 38.462 5.76 6.70 35.18 3.55
3325 3438 2.158667 GGTCCAAGTCCCTCAAGTTCAA 60.159 50.000 0.00 0.00 0.00 2.69
3357 3470 5.491982 GGTGATACTGAATCAAGTCAACCT 58.508 41.667 0.00 0.00 46.17 3.50
3651 4877 6.908820 CACATAAGCTGTACATAAGTTGCATG 59.091 38.462 0.00 0.00 35.91 4.06
3732 4960 0.036105 TGAGCATGTGTACCCAGCAG 60.036 55.000 0.00 0.00 0.00 4.24
3733 4961 0.745845 GAGCATGTGTACCCAGCAGG 60.746 60.000 0.00 0.00 43.78 4.85
3734 4962 2.409870 GCATGTGTACCCAGCAGGC 61.410 63.158 0.00 0.00 40.58 4.85
3735 4963 1.750399 CATGTGTACCCAGCAGGCC 60.750 63.158 0.00 0.00 40.58 5.19
3736 4964 2.230653 ATGTGTACCCAGCAGGCCA 61.231 57.895 5.01 0.00 40.58 5.36
3737 4965 2.359975 GTGTACCCAGCAGGCCAC 60.360 66.667 5.01 0.00 40.58 5.01
3738 4966 2.851588 TGTACCCAGCAGGCCACA 60.852 61.111 5.01 0.00 40.58 4.17
3739 4967 2.359975 GTACCCAGCAGGCCACAC 60.360 66.667 5.01 0.00 40.58 3.82
3740 4968 2.529136 TACCCAGCAGGCCACACT 60.529 61.111 5.01 0.00 40.58 3.55
3741 4969 2.894257 TACCCAGCAGGCCACACTG 61.894 63.158 5.01 9.24 40.58 3.66
3758 4986 4.017808 ACACTGGTCCTGATACTACTGTC 58.982 47.826 2.23 0.00 0.00 3.51
3779 5007 1.521234 GCAGCTAGCAGCAGTCTCC 60.521 63.158 25.43 0.00 45.56 3.71
3783 5011 0.461693 GCTAGCAGCAGTCTCCCAAG 60.462 60.000 10.63 0.00 41.89 3.61
3784 5012 0.461693 CTAGCAGCAGTCTCCCAAGC 60.462 60.000 0.00 0.00 0.00 4.01
3785 5013 1.194121 TAGCAGCAGTCTCCCAAGCA 61.194 55.000 0.00 0.00 0.00 3.91
3814 5042 7.154656 GGATTTGTGATGTTTAGCCTTCTTTT 58.845 34.615 0.00 0.00 0.00 2.27
3817 5045 6.959639 TGTGATGTTTAGCCTTCTTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
3875 5103 0.911769 TCTGGCAGGGGTTAGTGATG 59.088 55.000 15.73 0.00 0.00 3.07
3888 5116 4.095483 GGTTAGTGATGGTGAGCATTCTTG 59.905 45.833 0.00 0.00 0.00 3.02
3979 5210 3.199071 TGGTTAGGTCACATGGGTGTATC 59.801 47.826 0.00 0.00 45.45 2.24
4235 5468 5.500645 AAAGTGAGTCAACTTACAAAGCC 57.499 39.130 7.68 0.00 39.48 4.35
4249 5482 6.202379 ACTTACAAAGCCGAGTCTCTTAAAAC 59.798 38.462 0.00 0.00 0.00 2.43
4522 5765 5.308014 TGATTTGATTGATACAGGGGATCG 58.692 41.667 0.00 0.00 0.00 3.69
4542 5785 3.821600 TCGGGATGATCTAGTAACTCAGC 59.178 47.826 0.00 0.00 0.00 4.26
4543 5786 3.823873 CGGGATGATCTAGTAACTCAGCT 59.176 47.826 0.00 0.00 0.00 4.24
4742 5985 5.069648 CCTATTCTCAGGCATGACAGTAGAA 59.930 44.000 0.00 7.03 0.00 2.10
4761 6004 3.331889 AGAAGAAAAATCCTCAGCCTCCA 59.668 43.478 0.00 0.00 0.00 3.86
4905 6148 2.271497 CCCAAGCTCAGCCTGGAG 59.729 66.667 16.66 2.09 42.28 3.86
4966 6209 5.525378 AGTTCTTTGACATGAACAGTCAGAC 59.475 40.000 18.09 0.00 45.72 3.51
5047 6290 4.041075 TCAACAGGTTCCTATGCAGTACAA 59.959 41.667 0.00 0.00 0.00 2.41
5455 6700 3.420893 TCCCAAACATAGCTTTGACCAG 58.579 45.455 11.39 0.00 33.61 4.00
5577 6824 4.254402 ACTCGTTAGAAGTGTTTCCCTC 57.746 45.455 0.00 0.00 33.64 4.30
5582 6829 1.884235 AGAAGTGTTTCCCTCGCAAG 58.116 50.000 0.00 0.00 33.64 4.01
5603 6850 7.361713 CGCAAGAATACCTTAAGGAAAACATGA 60.362 37.037 28.52 3.01 43.02 3.07
5630 6877 5.038683 ACATTAGCACGCAATGAAATGATG 58.961 37.500 16.03 5.26 36.99 3.07
5644 6891 9.297586 CAATGAAATGATGGTCAGTAGAAATTG 57.702 33.333 0.00 0.00 0.00 2.32
5658 6905 7.067372 TCAGTAGAAATTGAATAAGCCATGTGG 59.933 37.037 0.00 0.00 38.53 4.17
5670 6917 7.781324 ATAAGCCATGTGGGAATAATTAAGG 57.219 36.000 0.54 0.00 40.01 2.69
5674 6921 5.185828 GCCATGTGGGAATAATTAAGGGATC 59.814 44.000 0.54 0.00 40.01 3.36
5745 6993 1.169661 TTGCGAACCATGTTCGGCTT 61.170 50.000 25.18 0.00 41.76 4.35
5987 7238 6.455360 AGGTATATGCAAAACAGTTGGATG 57.545 37.500 0.00 0.00 32.69 3.51
6398 7651 7.333423 GGTATGTTGTTTCTGTAGCTTGTATGA 59.667 37.037 0.00 0.00 0.00 2.15
6472 7725 2.523245 TGCCTGCATTTATGTTGGTGA 58.477 42.857 0.00 0.00 0.00 4.02
6661 7914 4.099266 TGCCTTGGGATATTGCAATTACAC 59.901 41.667 18.75 13.33 0.00 2.90
6691 7944 5.620206 ACAAGTGTGTGGACAGAATAATGA 58.380 37.500 0.00 0.00 36.31 2.57
6760 8014 6.100279 TGCTAATGAGGTGATAAGGAACATCT 59.900 38.462 0.00 0.00 0.00 2.90
6761 8015 6.426328 GCTAATGAGGTGATAAGGAACATCTG 59.574 42.308 0.00 0.00 0.00 2.90
6762 8016 6.566079 AATGAGGTGATAAGGAACATCTGA 57.434 37.500 0.00 0.00 0.00 3.27
6763 8017 6.760440 ATGAGGTGATAAGGAACATCTGAT 57.240 37.500 0.00 0.00 0.00 2.90
6765 8019 6.351711 TGAGGTGATAAGGAACATCTGATTG 58.648 40.000 0.00 0.00 0.00 2.67
6766 8020 6.156775 TGAGGTGATAAGGAACATCTGATTGA 59.843 38.462 0.00 0.00 0.00 2.57
6767 8021 6.590068 AGGTGATAAGGAACATCTGATTGAG 58.410 40.000 0.00 0.00 0.00 3.02
6768 8022 5.238214 GGTGATAAGGAACATCTGATTGAGC 59.762 44.000 0.00 0.00 0.00 4.26
6769 8023 6.054295 GTGATAAGGAACATCTGATTGAGCT 58.946 40.000 0.00 0.00 0.00 4.09
6770 8024 7.212976 GTGATAAGGAACATCTGATTGAGCTA 58.787 38.462 0.00 0.00 0.00 3.32
6771 8025 7.712639 GTGATAAGGAACATCTGATTGAGCTAA 59.287 37.037 0.00 0.00 0.00 3.09
6772 8026 7.712639 TGATAAGGAACATCTGATTGAGCTAAC 59.287 37.037 0.00 0.00 0.00 2.34
6773 8027 5.426689 AGGAACATCTGATTGAGCTAACA 57.573 39.130 0.00 0.00 0.00 2.41
6774 8028 5.809001 AGGAACATCTGATTGAGCTAACAA 58.191 37.500 0.00 0.00 0.00 2.83
6775 8029 5.879223 AGGAACATCTGATTGAGCTAACAAG 59.121 40.000 0.00 0.00 33.22 3.16
6776 8030 5.877012 GGAACATCTGATTGAGCTAACAAGA 59.123 40.000 0.00 0.00 33.22 3.02
6777 8031 6.372659 GGAACATCTGATTGAGCTAACAAGAA 59.627 38.462 0.00 0.00 33.22 2.52
6778 8032 6.734104 ACATCTGATTGAGCTAACAAGAAC 57.266 37.500 0.00 0.00 33.22 3.01
6779 8033 6.233434 ACATCTGATTGAGCTAACAAGAACA 58.767 36.000 0.00 0.00 33.22 3.18
6780 8034 6.883217 ACATCTGATTGAGCTAACAAGAACAT 59.117 34.615 0.00 0.00 33.22 2.71
6781 8035 6.732531 TCTGATTGAGCTAACAAGAACATG 57.267 37.500 0.00 0.00 33.22 3.21
6782 8036 6.233434 TCTGATTGAGCTAACAAGAACATGT 58.767 36.000 0.00 0.00 33.22 3.21
6783 8037 6.369890 TCTGATTGAGCTAACAAGAACATGTC 59.630 38.462 0.00 0.00 33.22 3.06
6784 8038 6.233434 TGATTGAGCTAACAAGAACATGTCT 58.767 36.000 0.00 0.00 38.69 3.41
6797 8051 6.764308 AGAACATGTCTTGGGTATTCATTG 57.236 37.500 0.00 0.00 29.66 2.82
6798 8052 6.248433 AGAACATGTCTTGGGTATTCATTGT 58.752 36.000 0.00 0.00 29.66 2.71
6799 8053 6.721208 AGAACATGTCTTGGGTATTCATTGTT 59.279 34.615 0.00 0.00 29.66 2.83
6800 8054 6.271488 ACATGTCTTGGGTATTCATTGTTG 57.729 37.500 0.00 0.00 0.00 3.33
6801 8055 6.009589 ACATGTCTTGGGTATTCATTGTTGA 58.990 36.000 0.00 0.00 0.00 3.18
6802 8056 6.493115 ACATGTCTTGGGTATTCATTGTTGAA 59.507 34.615 0.00 0.00 45.57 2.69
6819 8073 9.507280 CATTGTTGAATTGTGATTATGTACTCC 57.493 33.333 0.00 0.00 0.00 3.85
6820 8074 7.302350 TGTTGAATTGTGATTATGTACTCCG 57.698 36.000 0.00 0.00 0.00 4.63
6821 8075 7.100409 TGTTGAATTGTGATTATGTACTCCGA 58.900 34.615 0.00 0.00 0.00 4.55
6822 8076 7.768582 TGTTGAATTGTGATTATGTACTCCGAT 59.231 33.333 0.00 0.00 0.00 4.18
6823 8077 7.946655 TGAATTGTGATTATGTACTCCGATC 57.053 36.000 0.00 0.00 0.00 3.69
6824 8078 6.929049 TGAATTGTGATTATGTACTCCGATCC 59.071 38.462 0.00 0.00 0.00 3.36
6825 8079 5.862678 TTGTGATTATGTACTCCGATCCA 57.137 39.130 0.00 0.00 0.00 3.41
6826 8080 6.419484 TTGTGATTATGTACTCCGATCCAT 57.581 37.500 0.00 0.00 0.00 3.41
6827 8081 7.533289 TTGTGATTATGTACTCCGATCCATA 57.467 36.000 0.00 0.00 0.00 2.74
6828 8082 7.533289 TGTGATTATGTACTCCGATCCATAA 57.467 36.000 0.00 3.35 35.09 1.90
6829 8083 8.134202 TGTGATTATGTACTCCGATCCATAAT 57.866 34.615 10.56 10.56 41.04 1.28
6830 8084 9.250246 TGTGATTATGTACTCCGATCCATAATA 57.750 33.333 10.67 0.00 39.40 0.98
6838 8092 5.844004 ACTCCGATCCATAATAAGTGTCAC 58.156 41.667 0.00 0.00 0.00 3.67
6845 8099 7.904977 CGATCCATAATAAGTGTCACAGTTTTG 59.095 37.037 2.42 2.88 0.00 2.44
6848 8102 8.564574 TCCATAATAAGTGTCACAGTTTTGAAC 58.435 33.333 2.42 0.00 0.00 3.18
6849 8103 8.567948 CCATAATAAGTGTCACAGTTTTGAACT 58.432 33.333 2.42 0.00 44.06 3.01
6854 8108 5.497474 AGTGTCACAGTTTTGAACTAAGGT 58.503 37.500 5.62 0.00 40.46 3.50
6855 8109 5.944007 AGTGTCACAGTTTTGAACTAAGGTT 59.056 36.000 5.62 0.00 40.46 3.50
6856 8110 6.027749 GTGTCACAGTTTTGAACTAAGGTTG 58.972 40.000 0.00 0.00 40.46 3.77
6857 8111 5.941058 TGTCACAGTTTTGAACTAAGGTTGA 59.059 36.000 0.00 0.00 40.46 3.18
6858 8112 6.431543 TGTCACAGTTTTGAACTAAGGTTGAA 59.568 34.615 0.00 0.00 40.46 2.69
6859 8113 6.745907 GTCACAGTTTTGAACTAAGGTTGAAC 59.254 38.462 0.00 0.00 40.46 3.18
6860 8114 6.657541 TCACAGTTTTGAACTAAGGTTGAACT 59.342 34.615 0.00 0.00 40.46 3.01
6861 8115 7.825270 TCACAGTTTTGAACTAAGGTTGAACTA 59.175 33.333 0.00 0.00 40.46 2.24
6862 8116 8.455682 CACAGTTTTGAACTAAGGTTGAACTAA 58.544 33.333 0.00 0.00 40.46 2.24
6863 8117 8.456471 ACAGTTTTGAACTAAGGTTGAACTAAC 58.544 33.333 0.00 0.00 40.46 2.34
6905 8173 7.901889 CGACACTCATTTTGATTCTGTTCATAG 59.098 37.037 0.00 0.00 0.00 2.23
7012 8280 4.352009 TCCAGTGCCCATGTTAAATGATT 58.648 39.130 0.00 0.00 0.00 2.57
7074 8347 4.837093 ATCGACTAATTTGGGACCTCAA 57.163 40.909 0.00 0.00 0.00 3.02
7126 8399 6.262944 AGAATGTATTGTTGCTGTTCTGACAA 59.737 34.615 0.00 0.00 34.85 3.18
7150 8423 1.531423 AGCATCTGCCTCTGTTGTTG 58.469 50.000 0.00 0.00 43.38 3.33
7151 8424 1.202855 AGCATCTGCCTCTGTTGTTGT 60.203 47.619 0.00 0.00 43.38 3.32
7152 8425 1.610522 GCATCTGCCTCTGTTGTTGTT 59.389 47.619 0.00 0.00 34.31 2.83
7222 8495 6.430308 GGTTCAAAGAAGTAGACCCTAAAAGG 59.570 42.308 0.00 0.00 34.30 3.11
7226 8499 6.758806 AAGAAGTAGACCCTAAAAGGAACA 57.241 37.500 0.00 0.00 37.67 3.18
7227 8500 6.758806 AGAAGTAGACCCTAAAAGGAACAA 57.241 37.500 0.00 0.00 37.67 2.83
7288 8561 2.448926 TGGGATTGGCGTACATATCG 57.551 50.000 0.00 0.00 0.00 2.92
7326 8599 4.643387 GCCTGGGTCACACGGCTT 62.643 66.667 5.74 0.00 39.10 4.35
7327 8600 2.113139 CCTGGGTCACACGGCTTT 59.887 61.111 0.00 0.00 0.00 3.51
7350 8623 2.202570 GCTTGGCATGCTTCAGCG 60.203 61.111 18.92 4.55 45.83 5.18
7464 8738 6.790232 TTGTGAGTTCCATTTTCTTTTCCT 57.210 33.333 0.00 0.00 0.00 3.36
7531 8805 3.988379 TTCAAATATGCTGCGGGATTC 57.012 42.857 4.32 0.00 0.00 2.52
7702 8976 4.987912 GGCTATCAAGTCAGCTATTCTGTC 59.012 45.833 0.00 0.00 43.32 3.51
7703 8977 4.987912 GCTATCAAGTCAGCTATTCTGTCC 59.012 45.833 0.00 0.00 43.32 4.02
7754 9028 7.080724 GCATAGCTGAGCCTTAATATTGTTTC 58.919 38.462 0.00 0.00 0.00 2.78
7842 9116 3.158676 AGGACGGAGCTATATTGAGTCC 58.841 50.000 3.75 3.75 44.94 3.85
7849 9123 3.576118 GAGCTATATTGAGTCCAGCAGGA 59.424 47.826 0.00 0.00 43.21 3.86
7860 9134 3.415087 AGCAGGAGCCATGACCCC 61.415 66.667 0.00 0.00 43.56 4.95
7861 9135 3.731728 GCAGGAGCCATGACCCCA 61.732 66.667 0.00 0.00 33.58 4.96
7862 9136 2.593978 CAGGAGCCATGACCCCAG 59.406 66.667 0.00 0.00 0.00 4.45
7866 9147 3.711059 GAGCCATGACCCCAGCCTG 62.711 68.421 0.00 0.00 0.00 4.85
7870 9151 1.533219 CATGACCCCAGCCTGCATA 59.467 57.895 0.00 0.00 0.00 3.14
7876 9157 3.117169 TGACCCCAGCCTGCATAAAATAT 60.117 43.478 0.00 0.00 0.00 1.28
7877 9158 3.500343 ACCCCAGCCTGCATAAAATATC 58.500 45.455 0.00 0.00 0.00 1.63
7881 9162 4.828939 CCCAGCCTGCATAAAATATCTGAA 59.171 41.667 0.00 0.00 0.00 3.02
7966 9249 3.922171 AAGGATCTTGCTTAGGTCTGG 57.078 47.619 0.00 0.00 34.21 3.86
7973 9256 1.055849 TGCTTAGGTCTGGCAGTGAA 58.944 50.000 15.27 3.95 0.00 3.18
7989 9272 5.708948 GCAGTGAAGCCATAAAACACATTA 58.291 37.500 0.00 0.00 34.47 1.90
7990 9273 6.155827 GCAGTGAAGCCATAAAACACATTAA 58.844 36.000 0.00 0.00 34.47 1.40
7991 9274 6.644592 GCAGTGAAGCCATAAAACACATTAAA 59.355 34.615 0.00 0.00 34.47 1.52
8031 9315 4.053295 GCGGAGTAGTACAACAGAAACAA 58.947 43.478 2.52 0.00 0.00 2.83
8061 9405 9.590451 CATTGCATATCCAAAATTACAAACTCT 57.410 29.630 0.00 0.00 0.00 3.24
8135 9479 6.813649 TGTAAGCTCTGCTACAACTGAAATAG 59.186 38.462 0.00 0.00 38.25 1.73
8145 9489 7.880713 TGCTACAACTGAAATAGACAATACCAA 59.119 33.333 0.00 0.00 0.00 3.67
8146 9490 8.391106 GCTACAACTGAAATAGACAATACCAAG 58.609 37.037 0.00 0.00 0.00 3.61
8147 9491 7.687941 ACAACTGAAATAGACAATACCAAGG 57.312 36.000 0.00 0.00 0.00 3.61
8169 9513 7.793948 AGGAGTACCATTTCTACAACTACTT 57.206 36.000 0.00 0.00 38.94 2.24
8215 9559 5.492855 TGCACCAACTACCAATACTACTT 57.507 39.130 0.00 0.00 0.00 2.24
8248 9592 9.868277 ATTATATTCTGCATCTACAACTCTAGC 57.132 33.333 0.00 0.00 0.00 3.42
8249 9593 5.867903 ATTCTGCATCTACAACTCTAGCT 57.132 39.130 0.00 0.00 0.00 3.32
8250 9594 4.909696 TCTGCATCTACAACTCTAGCTC 57.090 45.455 0.00 0.00 0.00 4.09
8251 9595 4.273318 TCTGCATCTACAACTCTAGCTCA 58.727 43.478 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.708177 CAATGTATCAGGTCTACAAGGGG 58.292 47.826 0.00 0.00 33.12 4.79
107 108 1.676006 CAGGAGGCGTGTCAAAAACTT 59.324 47.619 0.00 0.00 0.00 2.66
124 125 3.378427 TCGGATGACATATATCTCGCAGG 59.622 47.826 0.00 0.00 0.00 4.85
252 267 6.428771 GTCTACTCGAATTCTAGCTCATACCT 59.571 42.308 6.89 0.00 0.00 3.08
253 268 6.428771 AGTCTACTCGAATTCTAGCTCATACC 59.571 42.308 6.89 0.00 0.00 2.73
269 284 6.380190 GCCTTACATATAACCAGTCTACTCG 58.620 44.000 0.00 0.00 0.00 4.18
292 307 2.579410 TCCTACAAACCAAAGGAGGC 57.421 50.000 0.00 0.00 34.46 4.70
364 379 4.810345 TCCATTCCTACAAAACAAAGGGT 58.190 39.130 0.00 0.00 0.00 4.34
558 586 5.994668 GCCTTCTTTGGTTCATAGGATAGAG 59.005 44.000 0.00 0.00 0.00 2.43
559 587 5.163195 GGCCTTCTTTGGTTCATAGGATAGA 60.163 44.000 0.00 0.00 0.00 1.98
606 634 2.363795 TCCAGTAGGACAGGGGCG 60.364 66.667 0.00 0.00 39.61 6.13
628 656 1.138859 TGGTTGGGATGAGATGCTACG 59.861 52.381 0.00 0.00 0.00 3.51
642 670 5.175859 AGTTTCAGTATATCACGTGGTTGG 58.824 41.667 17.00 0.00 0.00 3.77
866 907 3.070987 TACGGGGGAGGAGGAGAGC 62.071 68.421 0.00 0.00 0.00 4.09
1023 1072 2.799371 GACCGCCAGTAGGACTCG 59.201 66.667 0.00 0.00 36.89 4.18
1263 1312 3.254617 AACCAACCCTCGTCCCCC 61.255 66.667 0.00 0.00 0.00 5.40
1303 1353 4.371786 TGAGCATGAATACTTGGACGATC 58.628 43.478 0.00 0.00 0.00 3.69
1304 1354 4.141846 ACTGAGCATGAATACTTGGACGAT 60.142 41.667 0.00 0.00 0.00 3.73
1306 1356 3.525537 ACTGAGCATGAATACTTGGACG 58.474 45.455 0.00 0.00 0.00 4.79
1307 1357 6.870965 CCTATACTGAGCATGAATACTTGGAC 59.129 42.308 0.00 0.00 0.00 4.02
1308 1358 6.782494 TCCTATACTGAGCATGAATACTTGGA 59.218 38.462 0.00 0.00 0.00 3.53
1309 1359 6.870965 GTCCTATACTGAGCATGAATACTTGG 59.129 42.308 0.00 0.00 0.00 3.61
1310 1360 7.665690 AGTCCTATACTGAGCATGAATACTTG 58.334 38.462 0.00 0.00 36.93 3.16
1311 1361 7.847711 AGTCCTATACTGAGCATGAATACTT 57.152 36.000 0.00 0.00 36.93 2.24
1427 1477 7.042335 CACTGGAAAATCCCTGTAACTACTAG 58.958 42.308 0.00 0.00 36.74 2.57
1474 1524 2.094675 CTATTTCCCTGCAACCCACAG 58.905 52.381 0.00 0.00 34.82 3.66
1521 1571 7.936847 TGGTATACACTAGCCAAATTTCCTATG 59.063 37.037 5.01 0.00 0.00 2.23
1535 1585 5.449107 ACGTATGGCTTGGTATACACTAG 57.551 43.478 5.01 2.39 31.65 2.57
1555 1605 2.753452 AGGTACGATAGCCATCCATACG 59.247 50.000 0.00 0.00 42.67 3.06
1580 1640 1.003118 GGATTGCCACACCTCACTACA 59.997 52.381 0.00 0.00 0.00 2.74
1600 1660 1.164411 TTTTGGCCAGACATAGTGCG 58.836 50.000 5.11 0.00 0.00 5.34
1632 1692 5.350365 GCGTAGTCAAGAAACACATATGGAA 59.650 40.000 7.80 0.00 0.00 3.53
1646 1706 4.511457 CATGAACTCATGCGTAGTCAAG 57.489 45.455 6.76 0.00 45.92 3.02
1678 1738 5.091261 ACATACAGGTTCTTAGCCTTCAG 57.909 43.478 0.00 0.00 33.31 3.02
1719 1779 2.167487 GGGCAGAGAGAGTTAGAAGGTG 59.833 54.545 0.00 0.00 0.00 4.00
1730 1790 2.592993 CGGTTTGGGGGCAGAGAGA 61.593 63.158 0.00 0.00 0.00 3.10
1736 1796 2.846497 TTCATCCGGTTTGGGGGCA 61.846 57.895 0.00 0.00 38.76 5.36
1746 1806 3.262420 CAGAAGGTAACAGTTCATCCGG 58.738 50.000 0.00 0.00 41.41 5.14
1799 1859 8.364142 GGTGATATCCATCATTAGGAGCTATAC 58.636 40.741 0.00 0.00 43.03 1.47
1825 1885 5.924475 TTTTTAAGAAGCAGAGAAGGACG 57.076 39.130 0.00 0.00 0.00 4.79
1852 1912 2.107950 TGGATGGACGGAACATTGTC 57.892 50.000 0.00 0.00 0.00 3.18
1854 1914 2.436417 AGTTGGATGGACGGAACATTG 58.564 47.619 0.00 0.00 0.00 2.82
1899 1959 4.820173 GCAAGTGTTACTCTAAAACCCAGT 59.180 41.667 0.00 0.00 0.00 4.00
1923 1983 4.449743 TCTTCAGGAAAACCAACGTAATCG 59.550 41.667 0.00 0.00 43.34 3.34
1924 1984 5.934935 TCTTCAGGAAAACCAACGTAATC 57.065 39.130 0.00 0.00 0.00 1.75
1930 1994 6.454795 TGCATAATTCTTCAGGAAAACCAAC 58.545 36.000 0.00 0.00 37.49 3.77
2033 2097 6.811253 TGCTTAAGTCCAACATTAATCGTT 57.189 33.333 4.02 0.00 0.00 3.85
2110 2174 3.990469 CACATCCTACTTCACTGTGTGAC 59.010 47.826 7.79 0.00 42.60 3.67
2186 2250 5.453903 CGCTCTTATATTATGGGATGGAGGG 60.454 48.000 0.00 0.00 0.00 4.30
2187 2251 5.129485 ACGCTCTTATATTATGGGATGGAGG 59.871 44.000 0.00 0.00 0.00 4.30
2188 2252 6.227298 ACGCTCTTATATTATGGGATGGAG 57.773 41.667 0.00 0.00 0.00 3.86
2189 2253 6.620877 AACGCTCTTATATTATGGGATGGA 57.379 37.500 0.00 0.00 0.00 3.41
2190 2254 7.687941 AAAACGCTCTTATATTATGGGATGG 57.312 36.000 0.00 0.00 0.00 3.51
2191 2255 8.783093 TCAAAAACGCTCTTATATTATGGGATG 58.217 33.333 0.00 0.00 0.00 3.51
2192 2256 8.784043 GTCAAAAACGCTCTTATATTATGGGAT 58.216 33.333 0.00 0.00 0.00 3.85
2193 2257 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2194 2258 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2195 2259 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2198 2262 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
2199 2263 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
2200 2264 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
2201 2265 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
2202 2266 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
2203 2267 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2204 2268 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
2205 2269 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2206 2270 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
2219 2283 7.388460 AGAGCGTATTTTACACTAGTGTAGT 57.612 36.000 29.34 22.30 45.57 2.73
2220 2284 9.947669 ATAAGAGCGTATTTTACACTAGTGTAG 57.052 33.333 29.34 20.05 45.57 2.74
2231 2295 9.577110 CGTCCCATAATATAAGAGCGTATTTTA 57.423 33.333 0.00 0.00 0.00 1.52
2232 2296 7.548075 CCGTCCCATAATATAAGAGCGTATTTT 59.452 37.037 0.00 0.00 0.00 1.82
2233 2297 7.039882 CCGTCCCATAATATAAGAGCGTATTT 58.960 38.462 0.00 0.00 0.00 1.40
2234 2298 6.379133 TCCGTCCCATAATATAAGAGCGTATT 59.621 38.462 0.00 0.00 0.00 1.89
2235 2299 5.889853 TCCGTCCCATAATATAAGAGCGTAT 59.110 40.000 0.00 0.00 0.00 3.06
2236 2300 5.255687 TCCGTCCCATAATATAAGAGCGTA 58.744 41.667 0.00 0.00 0.00 4.42
2237 2301 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2238 2302 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2239 2303 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2240 2304 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2241 2305 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2242 2306 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2243 2307 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2244 2308 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2245 2309 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2246 2310 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2247 2311 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2248 2312 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2249 2313 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2250 2314 0.338814 AAGTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2251 2315 0.115745 AAAGTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2252 2316 1.273759 AAAAGTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
2253 2317 3.678252 GCTAAAAAGTACTCCCTCCGTCC 60.678 52.174 0.00 0.00 0.00 4.79
2254 2318 3.519579 GCTAAAAAGTACTCCCTCCGTC 58.480 50.000 0.00 0.00 0.00 4.79
2255 2319 2.235650 GGCTAAAAAGTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
2256 2320 2.235402 TGGCTAAAAAGTACTCCCTCCG 59.765 50.000 0.00 0.00 0.00 4.63
2257 2321 3.994931 TGGCTAAAAAGTACTCCCTCC 57.005 47.619 0.00 0.00 0.00 4.30
2258 2322 4.200092 CCATGGCTAAAAAGTACTCCCTC 58.800 47.826 0.00 0.00 0.00 4.30
2259 2323 3.053619 CCCATGGCTAAAAAGTACTCCCT 60.054 47.826 6.09 0.00 0.00 4.20
2260 2324 3.288092 CCCATGGCTAAAAAGTACTCCC 58.712 50.000 6.09 0.00 0.00 4.30
2261 2325 3.288092 CCCCATGGCTAAAAAGTACTCC 58.712 50.000 6.09 0.00 0.00 3.85
2262 2326 3.964411 ACCCCATGGCTAAAAAGTACTC 58.036 45.455 6.09 0.00 33.59 2.59
2263 2327 4.538891 ACTACCCCATGGCTAAAAAGTACT 59.461 41.667 6.09 0.00 33.59 2.73
2264 2328 4.638865 CACTACCCCATGGCTAAAAAGTAC 59.361 45.833 6.09 0.00 33.59 2.73
2265 2329 4.536888 TCACTACCCCATGGCTAAAAAGTA 59.463 41.667 6.09 0.00 33.59 2.24
2266 2330 3.332485 TCACTACCCCATGGCTAAAAAGT 59.668 43.478 6.09 0.44 33.59 2.66
2267 2331 3.963129 TCACTACCCCATGGCTAAAAAG 58.037 45.455 6.09 0.00 33.59 2.27
2268 2332 4.017958 TGATCACTACCCCATGGCTAAAAA 60.018 41.667 6.09 0.00 33.59 1.94
2342 2406 7.363031 TGGAGAGGACCTACTCATAAGTTTAT 58.637 38.462 17.49 0.00 39.97 1.40
2358 2422 1.056660 TTGGTTCACCTGGAGAGGAC 58.943 55.000 0.00 0.00 42.93 3.85
2393 2457 2.673368 ACGCTCAGCAAAGCAATACTAC 59.327 45.455 10.48 0.00 42.62 2.73
2399 2463 0.455410 ACAAACGCTCAGCAAAGCAA 59.545 45.000 10.48 0.00 42.62 3.91
2448 2561 1.201424 ATTTGGGACGGAGGGAGTAC 58.799 55.000 0.00 0.00 0.00 2.73
2449 2562 1.961133 AATTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2450 2563 1.961133 TAATTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2451 2564 2.238898 ACTTAATTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2452 2565 2.026636 CACTTAATTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2453 2566 2.290705 ACACTTAATTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2454 2567 3.007635 GACACTTAATTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2455 2568 3.933332 GAGACACTTAATTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2456 2569 3.325425 TGAGACACTTAATTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2457 2570 3.670625 TGAGACACTTAATTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2458 2571 4.755123 AGTTGAGACACTTAATTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2459 2572 6.635030 AAGTTGAGACACTTAATTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2460 2573 6.605594 ACAAAGTTGAGACACTTAATTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2461 2574 6.805713 ACAAAGTTGAGACACTTAATTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2462 2575 8.621286 AGTACAAAGTTGAGACACTTAATTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2467 2580 9.525409 GAGTTAGTACAAAGTTGAGACACTTAA 57.475 33.333 0.00 0.00 35.87 1.85
2468 2581 8.910944 AGAGTTAGTACAAAGTTGAGACACTTA 58.089 33.333 0.00 0.00 35.87 2.24
2469 2582 7.783042 AGAGTTAGTACAAAGTTGAGACACTT 58.217 34.615 0.00 0.00 38.74 3.16
2470 2583 7.349412 AGAGTTAGTACAAAGTTGAGACACT 57.651 36.000 0.00 0.00 0.00 3.55
2471 2584 8.351461 ACTAGAGTTAGTACAAAGTTGAGACAC 58.649 37.037 0.00 0.00 38.35 3.67
2472 2585 8.350722 CACTAGAGTTAGTACAAAGTTGAGACA 58.649 37.037 0.00 0.00 38.05 3.41
2473 2586 8.351461 ACACTAGAGTTAGTACAAAGTTGAGAC 58.649 37.037 0.00 0.00 38.05 3.36
2474 2587 8.461249 ACACTAGAGTTAGTACAAAGTTGAGA 57.539 34.615 0.00 0.00 38.05 3.27
2489 2602 9.140874 ACCTTAGTACAACTTTACACTAGAGTT 57.859 33.333 0.00 0.00 34.14 3.01
2490 2603 8.703378 ACCTTAGTACAACTTTACACTAGAGT 57.297 34.615 0.00 0.00 0.00 3.24
2491 2604 8.790718 TGACCTTAGTACAACTTTACACTAGAG 58.209 37.037 0.00 0.00 0.00 2.43
2492 2605 8.696043 TGACCTTAGTACAACTTTACACTAGA 57.304 34.615 0.00 0.00 0.00 2.43
2493 2606 9.408069 CTTGACCTTAGTACAACTTTACACTAG 57.592 37.037 0.00 0.00 0.00 2.57
2494 2607 9.135189 TCTTGACCTTAGTACAACTTTACACTA 57.865 33.333 0.00 0.00 0.00 2.74
2495 2608 7.924947 GTCTTGACCTTAGTACAACTTTACACT 59.075 37.037 0.00 0.00 0.00 3.55
2496 2609 7.707893 TGTCTTGACCTTAGTACAACTTTACAC 59.292 37.037 0.00 0.00 0.00 2.90
2497 2610 7.707893 GTGTCTTGACCTTAGTACAACTTTACA 59.292 37.037 0.00 0.00 0.00 2.41
2498 2611 7.924947 AGTGTCTTGACCTTAGTACAACTTTAC 59.075 37.037 0.00 0.00 0.00 2.01
2499 2612 8.015185 AGTGTCTTGACCTTAGTACAACTTTA 57.985 34.615 0.00 0.00 0.00 1.85
2500 2613 6.885922 AGTGTCTTGACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
2501 2614 6.481434 AGTGTCTTGACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
2502 2615 6.481434 AAGTGTCTTGACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
2503 2616 8.828688 AATAAGTGTCTTGACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
2504 2617 9.841295 AAAATAAGTGTCTTGACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
2505 2618 9.268268 CAAAATAAGTGTCTTGACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
2506 2619 8.718734 CCAAAATAAGTGTCTTGACCTTAGTAC 58.281 37.037 13.13 0.00 0.00 2.73
2507 2620 7.881232 CCCAAAATAAGTGTCTTGACCTTAGTA 59.119 37.037 13.13 0.23 0.00 1.82
2508 2621 6.715264 CCCAAAATAAGTGTCTTGACCTTAGT 59.285 38.462 13.13 9.86 0.00 2.24
2509 2622 6.940298 TCCCAAAATAAGTGTCTTGACCTTAG 59.060 38.462 13.13 0.00 0.00 2.18
2510 2623 6.713450 GTCCCAAAATAAGTGTCTTGACCTTA 59.287 38.462 11.29 11.29 0.00 2.69
2511 2624 5.535030 GTCCCAAAATAAGTGTCTTGACCTT 59.465 40.000 0.00 4.52 0.00 3.50
2512 2625 5.070685 GTCCCAAAATAAGTGTCTTGACCT 58.929 41.667 0.00 0.00 0.00 3.85
2513 2626 4.083484 CGTCCCAAAATAAGTGTCTTGACC 60.083 45.833 0.00 0.00 0.00 4.02
2514 2627 4.083484 CCGTCCCAAAATAAGTGTCTTGAC 60.083 45.833 0.00 0.00 0.00 3.18
2515 2628 4.069304 CCGTCCCAAAATAAGTGTCTTGA 58.931 43.478 0.00 0.00 0.00 3.02
2516 2629 4.069304 TCCGTCCCAAAATAAGTGTCTTG 58.931 43.478 0.00 0.00 0.00 3.02
2517 2630 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
2518 2631 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2519 2632 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2520 2633 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2521 2634 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2522 2635 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2523 2636 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2524 2637 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2525 2638 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2526 2639 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2527 2640 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2528 2641 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2529 2642 0.337082 TCATACTCCCTCCGTCCCAA 59.663 55.000 0.00 0.00 0.00 4.12
2530 2643 0.337082 TTCATACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
2531 2644 1.492764 TTTCATACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
2532 2645 3.840124 AATTTCATACTCCCTCCGTCC 57.160 47.619 0.00 0.00 0.00 4.79
2533 2646 4.344390 ACCTAATTTCATACTCCCTCCGTC 59.656 45.833 0.00 0.00 0.00 4.79
2534 2647 4.296056 ACCTAATTTCATACTCCCTCCGT 58.704 43.478 0.00 0.00 0.00 4.69
2535 2648 4.957684 ACCTAATTTCATACTCCCTCCG 57.042 45.455 0.00 0.00 0.00 4.63
2536 2649 7.283354 CAGAAAACCTAATTTCATACTCCCTCC 59.717 40.741 2.99 0.00 40.89 4.30
2537 2650 7.829706 ACAGAAAACCTAATTTCATACTCCCTC 59.170 37.037 2.99 0.00 40.89 4.30
2538 2651 7.699878 ACAGAAAACCTAATTTCATACTCCCT 58.300 34.615 2.99 0.00 40.89 4.20
2539 2652 7.939784 ACAGAAAACCTAATTTCATACTCCC 57.060 36.000 2.99 0.00 40.89 4.30
2571 2684 5.835819 TGATTGAAAGGTGACATTTTGGGTA 59.164 36.000 0.00 0.00 0.00 3.69
2585 2698 3.128242 GCAGGTCACTCATGATTGAAAGG 59.872 47.826 16.49 10.07 37.14 3.11
2655 2768 9.391006 TGAACTTGGACATAAGGTAATGTAATC 57.609 33.333 0.00 0.00 40.17 1.75
2715 2828 5.012046 TGAATCAGAGAAACTCAAGCCTACA 59.988 40.000 0.00 0.00 32.06 2.74
2716 2829 5.482908 TGAATCAGAGAAACTCAAGCCTAC 58.517 41.667 0.00 0.00 32.06 3.18
2817 2930 1.891811 TGCATTTCCCGCTTGAAATCA 59.108 42.857 7.19 6.60 41.74 2.57
3072 3185 3.644265 TGCCCACTACTTCACTTAGTTCA 59.356 43.478 0.00 0.00 0.00 3.18
3225 3338 6.288941 TGAATTTCACTTGGATCGTACCTA 57.711 37.500 0.00 0.00 0.00 3.08
3325 3438 1.485124 TCAGTATCACCGGCTGATGT 58.515 50.000 22.20 11.46 40.12 3.06
3357 3470 4.341487 TCTCCTCACGAGTCTTAATTCCA 58.659 43.478 0.00 0.00 39.84 3.53
3622 4848 8.184192 GCAACTTATGTACAGCTTATGTGAATT 58.816 33.333 0.33 0.00 43.80 2.17
3625 4851 6.169800 TGCAACTTATGTACAGCTTATGTGA 58.830 36.000 0.33 0.00 43.80 3.58
3732 4960 0.107654 GTATCAGGACCAGTGTGGCC 60.108 60.000 0.00 0.00 42.67 5.36
3733 4961 0.905357 AGTATCAGGACCAGTGTGGC 59.095 55.000 0.00 0.00 42.67 5.01
3734 4962 3.131223 CAGTAGTATCAGGACCAGTGTGG 59.869 52.174 0.00 0.00 45.02 4.17
3735 4963 3.764434 ACAGTAGTATCAGGACCAGTGTG 59.236 47.826 0.00 0.00 0.00 3.82
3736 4964 4.017808 GACAGTAGTATCAGGACCAGTGT 58.982 47.826 0.00 0.00 0.00 3.55
3737 4965 4.017126 TGACAGTAGTATCAGGACCAGTG 58.983 47.826 0.00 0.00 0.00 3.66
3738 4966 4.317530 TGACAGTAGTATCAGGACCAGT 57.682 45.455 0.00 0.00 0.00 4.00
3739 4967 4.440802 GCTTGACAGTAGTATCAGGACCAG 60.441 50.000 0.00 0.00 0.00 4.00
3740 4968 3.447586 GCTTGACAGTAGTATCAGGACCA 59.552 47.826 0.00 0.00 0.00 4.02
3741 4969 3.447586 TGCTTGACAGTAGTATCAGGACC 59.552 47.826 0.00 0.00 0.00 4.46
3758 4986 0.391395 AGACTGCTGCTAGCTGCTTG 60.391 55.000 36.36 30.48 42.95 4.01
3779 5007 3.446161 ACATCACAAATCCAGATGCTTGG 59.554 43.478 0.00 0.00 42.12 3.61
3783 5011 5.039333 GCTAAACATCACAAATCCAGATGC 58.961 41.667 0.00 0.00 42.12 3.91
3784 5012 5.359009 AGGCTAAACATCACAAATCCAGATG 59.641 40.000 0.00 0.00 43.56 2.90
3785 5013 5.513233 AGGCTAAACATCACAAATCCAGAT 58.487 37.500 0.00 0.00 0.00 2.90
3827 5055 6.826893 ATCCGTTTTCATTCAACAAAAGTG 57.173 33.333 0.00 0.00 0.00 3.16
3841 5069 5.048713 CCCTGCCAGATATAAATCCGTTTTC 60.049 44.000 0.00 0.00 31.98 2.29
3875 5103 4.051237 GTCCAAAAACAAGAATGCTCACC 58.949 43.478 0.00 0.00 0.00 4.02
3888 5116 7.924103 ATAAGATCAACAAACGTCCAAAAAC 57.076 32.000 0.00 0.00 0.00 2.43
3931 5162 9.599866 AATAGAATTAACGATGTGAACAGATGA 57.400 29.630 0.00 0.00 0.00 2.92
3935 5166 7.974675 ACCAATAGAATTAACGATGTGAACAG 58.025 34.615 0.00 0.00 0.00 3.16
3937 5168 9.916397 CTAACCAATAGAATTAACGATGTGAAC 57.084 33.333 0.00 0.00 33.04 3.18
3979 5210 4.033684 GCTGCGATCAATCAAGCTAAAAG 58.966 43.478 0.00 0.00 34.84 2.27
4180 5413 3.134623 TCTCTGAGAGAAACTTGTGGCAA 59.865 43.478 10.22 0.00 35.59 4.52
4522 5765 5.799827 AAGCTGAGTTACTAGATCATCCC 57.200 43.478 0.00 0.00 0.00 3.85
4543 5786 1.265095 CGCTGCTTTCTTGAGCTGAAA 59.735 47.619 0.00 0.00 42.23 2.69
4742 5985 3.629087 CATGGAGGCTGAGGATTTTTCT 58.371 45.455 0.00 0.00 0.00 2.52
4761 6004 5.718724 TCGATCAGAGAGTTATCATGCAT 57.281 39.130 0.00 0.00 0.00 3.96
5047 6290 3.513515 ACCAAACATTTGTGGTGACAAGT 59.486 39.130 0.00 0.00 46.53 3.16
5471 6718 1.962412 CATTGCGCGTGTACAATTGT 58.038 45.000 16.68 16.68 34.32 2.71
5476 6723 2.553770 GTGCATTGCGCGTGTACA 59.446 55.556 22.32 7.28 46.97 2.90
5577 6824 6.249035 TGTTTTCCTTAAGGTATTCTTGCG 57.751 37.500 21.04 0.00 36.93 4.85
5582 6829 8.406297 GTCCATCATGTTTTCCTTAAGGTATTC 58.594 37.037 21.04 10.98 36.34 1.75
5603 6850 2.642427 TCATTGCGTGCTAATGTCCAT 58.358 42.857 13.05 0.00 36.97 3.41
5630 6877 7.067494 ACATGGCTTATTCAATTTCTACTGACC 59.933 37.037 0.00 0.00 0.00 4.02
5644 6891 8.306761 CCTTAATTATTCCCACATGGCTTATTC 58.693 37.037 0.00 0.00 0.00 1.75
5674 6921 9.421806 TGCTCACAATTTAAGTTGGATAAAATG 57.578 29.630 14.38 3.03 32.16 2.32
5698 6945 9.362539 TGCACTACTACTATTTTTACTAACTGC 57.637 33.333 0.00 0.00 0.00 4.40
5955 7206 9.914834 ACTGTTTTGCATATACCTTCCTTAATA 57.085 29.630 0.00 0.00 0.00 0.98
6191 7444 7.775561 AGGTAAAATCCTAGAATGTGTCCAATC 59.224 37.037 0.00 0.00 35.87 2.67
6295 7548 3.250040 AGAAATACCTCAACAACGTGCAC 59.750 43.478 6.82 6.82 0.00 4.57
6352 7605 8.147058 ACATACCAAAATTGCAAGTACATTTGA 58.853 29.630 18.19 6.94 31.23 2.69
6472 7725 5.604231 TCCTCTCTGTACCATATTGCAATCT 59.396 40.000 16.86 2.75 0.00 2.40
6504 7757 2.417933 GAGGCACATGAGAATGACACAC 59.582 50.000 0.00 0.00 0.00 3.82
6592 7845 9.813826 AAGTTCAATATTTATATAGGCAAGGCT 57.186 29.630 0.72 0.72 0.00 4.58
6661 7914 2.224042 TGTCCACACACTTGTAGCTCTG 60.224 50.000 0.00 0.00 33.30 3.35
6744 7998 5.238214 GCTCAATCAGATGTTCCTTATCACC 59.762 44.000 0.00 0.00 0.00 4.02
6749 8003 6.946340 TGTTAGCTCAATCAGATGTTCCTTA 58.054 36.000 0.00 0.00 0.00 2.69
6760 8014 6.233434 AGACATGTTCTTGTTAGCTCAATCA 58.767 36.000 0.00 0.00 0.00 2.57
6761 8015 6.734104 AGACATGTTCTTGTTAGCTCAATC 57.266 37.500 0.00 0.00 0.00 2.67
6773 8027 6.721208 ACAATGAATACCCAAGACATGTTCTT 59.279 34.615 0.00 2.19 46.29 2.52
6774 8028 6.248433 ACAATGAATACCCAAGACATGTTCT 58.752 36.000 0.00 0.00 35.32 3.01
6775 8029 6.515272 ACAATGAATACCCAAGACATGTTC 57.485 37.500 0.00 0.00 0.00 3.18
6776 8030 6.493115 TCAACAATGAATACCCAAGACATGTT 59.507 34.615 0.00 0.00 30.99 2.71
6777 8031 6.009589 TCAACAATGAATACCCAAGACATGT 58.990 36.000 0.00 0.00 30.99 3.21
6778 8032 6.513806 TCAACAATGAATACCCAAGACATG 57.486 37.500 0.00 0.00 30.99 3.21
6793 8047 9.507280 GGAGTACATAATCACAATTCAACAATG 57.493 33.333 0.00 0.00 0.00 2.82
6794 8048 8.397906 CGGAGTACATAATCACAATTCAACAAT 58.602 33.333 0.00 0.00 0.00 2.71
6795 8049 7.604545 TCGGAGTACATAATCACAATTCAACAA 59.395 33.333 0.00 0.00 0.00 2.83
6796 8050 7.100409 TCGGAGTACATAATCACAATTCAACA 58.900 34.615 0.00 0.00 0.00 3.33
6797 8051 7.534085 TCGGAGTACATAATCACAATTCAAC 57.466 36.000 0.00 0.00 0.00 3.18
6798 8052 7.441157 GGATCGGAGTACATAATCACAATTCAA 59.559 37.037 0.00 0.00 0.00 2.69
6799 8053 6.929049 GGATCGGAGTACATAATCACAATTCA 59.071 38.462 0.00 0.00 0.00 2.57
6800 8054 6.929049 TGGATCGGAGTACATAATCACAATTC 59.071 38.462 0.00 0.00 0.00 2.17
6801 8055 6.826668 TGGATCGGAGTACATAATCACAATT 58.173 36.000 0.00 0.00 0.00 2.32
6802 8056 6.419484 TGGATCGGAGTACATAATCACAAT 57.581 37.500 0.00 0.00 0.00 2.71
6803 8057 5.862678 TGGATCGGAGTACATAATCACAA 57.137 39.130 0.00 0.00 0.00 3.33
6804 8058 7.533289 TTATGGATCGGAGTACATAATCACA 57.467 36.000 0.00 0.00 32.58 3.58
6809 8063 9.085645 ACACTTATTATGGATCGGAGTACATAA 57.914 33.333 11.59 11.59 39.33 1.90
6810 8064 8.645814 ACACTTATTATGGATCGGAGTACATA 57.354 34.615 0.00 0.00 0.00 2.29
6811 8065 7.232737 TGACACTTATTATGGATCGGAGTACAT 59.767 37.037 0.00 0.00 0.00 2.29
6812 8066 6.548251 TGACACTTATTATGGATCGGAGTACA 59.452 38.462 0.00 0.00 0.00 2.90
6813 8067 6.862090 GTGACACTTATTATGGATCGGAGTAC 59.138 42.308 0.00 0.00 0.00 2.73
6814 8068 6.548251 TGTGACACTTATTATGGATCGGAGTA 59.452 38.462 7.20 0.00 0.00 2.59
6815 8069 5.362717 TGTGACACTTATTATGGATCGGAGT 59.637 40.000 7.20 0.00 0.00 3.85
6816 8070 5.842907 TGTGACACTTATTATGGATCGGAG 58.157 41.667 7.20 0.00 0.00 4.63
6817 8071 5.362717 ACTGTGACACTTATTATGGATCGGA 59.637 40.000 7.20 0.00 0.00 4.55
6818 8072 5.601662 ACTGTGACACTTATTATGGATCGG 58.398 41.667 7.20 0.00 0.00 4.18
6819 8073 7.539712 AAACTGTGACACTTATTATGGATCG 57.460 36.000 7.20 0.00 0.00 3.69
6820 8074 8.946085 TCAAAACTGTGACACTTATTATGGATC 58.054 33.333 7.20 0.00 0.00 3.36
6821 8075 8.862325 TCAAAACTGTGACACTTATTATGGAT 57.138 30.769 7.20 0.00 0.00 3.41
6822 8076 8.564574 GTTCAAAACTGTGACACTTATTATGGA 58.435 33.333 7.20 0.00 0.00 3.41
6823 8077 8.567948 AGTTCAAAACTGTGACACTTATTATGG 58.432 33.333 7.20 0.00 41.01 2.74
6827 8081 8.621286 CCTTAGTTCAAAACTGTGACACTTATT 58.379 33.333 7.20 0.00 42.84 1.40
6828 8082 7.773690 ACCTTAGTTCAAAACTGTGACACTTAT 59.226 33.333 7.20 0.00 42.84 1.73
6829 8083 7.107542 ACCTTAGTTCAAAACTGTGACACTTA 58.892 34.615 7.20 0.00 42.84 2.24
6830 8084 5.944007 ACCTTAGTTCAAAACTGTGACACTT 59.056 36.000 7.20 0.00 42.84 3.16
6831 8085 5.497474 ACCTTAGTTCAAAACTGTGACACT 58.503 37.500 7.20 0.00 42.84 3.55
6832 8086 5.813080 ACCTTAGTTCAAAACTGTGACAC 57.187 39.130 0.00 0.00 42.84 3.67
6838 8092 8.836959 GTTAGTTCAACCTTAGTTCAAAACTG 57.163 34.615 2.65 0.00 42.84 3.16
6858 8112 5.235831 GTCGCAGTTTTGAACTAAGGTTAGT 59.764 40.000 0.00 0.00 45.43 2.24
6859 8113 5.235616 TGTCGCAGTTTTGAACTAAGGTTAG 59.764 40.000 0.00 0.00 40.46 2.34
6860 8114 5.006941 GTGTCGCAGTTTTGAACTAAGGTTA 59.993 40.000 0.00 0.00 40.46 2.85
6861 8115 3.942748 TGTCGCAGTTTTGAACTAAGGTT 59.057 39.130 0.00 0.00 40.46 3.50
6862 8116 3.311596 GTGTCGCAGTTTTGAACTAAGGT 59.688 43.478 0.00 0.00 40.46 3.50
6863 8117 3.560068 AGTGTCGCAGTTTTGAACTAAGG 59.440 43.478 0.00 0.00 40.46 2.69
6864 8118 4.270084 TGAGTGTCGCAGTTTTGAACTAAG 59.730 41.667 0.00 0.00 40.46 2.18
6865 8119 4.185394 TGAGTGTCGCAGTTTTGAACTAA 58.815 39.130 0.00 0.00 40.46 2.24
6868 8136 3.609103 ATGAGTGTCGCAGTTTTGAAC 57.391 42.857 0.00 0.00 0.00 3.18
6869 8137 4.630894 AAATGAGTGTCGCAGTTTTGAA 57.369 36.364 0.00 0.00 0.00 2.69
6871 8139 4.350346 TCAAAATGAGTGTCGCAGTTTTG 58.650 39.130 11.50 11.50 37.69 2.44
6967 8235 0.466739 TGATGCAGCACCCATCCATC 60.467 55.000 0.00 0.00 38.61 3.51
6968 8236 0.187606 ATGATGCAGCACCCATCCAT 59.812 50.000 6.89 0.00 38.61 3.41
6969 8237 0.845337 TATGATGCAGCACCCATCCA 59.155 50.000 6.89 0.00 38.61 3.41
6970 8238 2.211250 ATATGATGCAGCACCCATCC 57.789 50.000 6.89 0.00 38.61 3.51
6976 8244 2.287427 GCACTGGAATATGATGCAGCAC 60.287 50.000 6.89 0.00 41.95 4.40
7012 8280 7.039504 ACTGTATTAGGTTTCGAAGTGGAGTAA 60.040 37.037 0.00 0.00 0.00 2.24
7116 8389 4.320714 GCAGATGCTTTGATTGTCAGAACA 60.321 41.667 0.00 0.00 38.21 3.18
7126 8399 2.753452 CAACAGAGGCAGATGCTTTGAT 59.247 45.455 4.59 0.00 41.70 2.57
7226 8499 8.034215 TGTTCTTGTCAAAATTCTGAACATGTT 58.966 29.630 11.78 11.78 37.82 2.71
7227 8500 7.546358 TGTTCTTGTCAAAATTCTGAACATGT 58.454 30.769 10.24 0.00 37.82 3.21
7288 8561 3.637432 CAGCTATCAGTCAATCCTCGAC 58.363 50.000 0.00 0.00 0.00 4.20
7326 8599 2.102757 TGAAGCATGCCAAGCAGAAAAA 59.897 40.909 15.66 0.00 43.65 1.94
7327 8600 1.687660 TGAAGCATGCCAAGCAGAAAA 59.312 42.857 15.66 0.00 43.65 2.29
7331 8604 1.153823 GCTGAAGCATGCCAAGCAG 60.154 57.895 24.28 20.78 43.65 4.24
7337 8610 1.660560 AACATCCGCTGAAGCATGCC 61.661 55.000 15.66 0.00 42.21 4.40
7350 8623 2.094494 TGAGCGAGAGTCTTCAACATCC 60.094 50.000 0.00 0.00 0.00 3.51
7617 8891 7.920151 CGCCTTCCACAAAAATATGATTATTCA 59.080 33.333 0.00 0.00 36.00 2.57
7675 8949 1.577736 AGCTGACTTGATAGCCCTGT 58.422 50.000 0.00 0.00 40.76 4.00
7702 8976 1.606224 GCCAAACAGCACAAAGGATGG 60.606 52.381 0.00 0.00 0.00 3.51
7703 8977 1.068895 TGCCAAACAGCACAAAGGATG 59.931 47.619 0.00 0.00 38.00 3.51
7733 9007 7.569240 AGTAGAAACAATATTAAGGCTCAGCT 58.431 34.615 0.00 0.00 0.00 4.24
7734 9008 7.713073 AGAGTAGAAACAATATTAAGGCTCAGC 59.287 37.037 0.00 0.00 0.00 4.26
7735 9009 9.255304 GAGAGTAGAAACAATATTAAGGCTCAG 57.745 37.037 0.00 0.00 0.00 3.35
7736 9010 8.758829 TGAGAGTAGAAACAATATTAAGGCTCA 58.241 33.333 0.00 0.00 0.00 4.26
7737 9011 9.601217 TTGAGAGTAGAAACAATATTAAGGCTC 57.399 33.333 0.00 0.00 0.00 4.70
7738 9012 9.959721 TTTGAGAGTAGAAACAATATTAAGGCT 57.040 29.630 0.00 0.00 0.00 4.58
7782 9056 1.816835 CAGATGCACTTTCCACATGCT 59.183 47.619 0.00 0.00 40.13 3.79
7842 9116 2.124403 GGGTCATGGCTCCTGCTG 60.124 66.667 0.00 0.00 39.59 4.41
7849 9123 3.736224 CAGGCTGGGGTCATGGCT 61.736 66.667 6.61 0.00 37.06 4.75
7860 9134 8.790718 AGTTATTCAGATATTTTATGCAGGCTG 58.209 33.333 10.94 10.94 0.00 4.85
7861 9135 8.930846 AGTTATTCAGATATTTTATGCAGGCT 57.069 30.769 0.00 0.00 0.00 4.58
7862 9136 9.971922 AAAGTTATTCAGATATTTTATGCAGGC 57.028 29.630 0.00 0.00 0.00 4.85
7893 9174 9.793259 AAGACTATTTTCCTAATCAACACTCAA 57.207 29.630 0.00 0.00 0.00 3.02
7894 9175 9.219603 CAAGACTATTTTCCTAATCAACACTCA 57.780 33.333 0.00 0.00 0.00 3.41
7896 9177 9.003658 CACAAGACTATTTTCCTAATCAACACT 57.996 33.333 0.00 0.00 0.00 3.55
7897 9178 8.237267 CCACAAGACTATTTTCCTAATCAACAC 58.763 37.037 0.00 0.00 0.00 3.32
7898 9179 7.094377 GCCACAAGACTATTTTCCTAATCAACA 60.094 37.037 0.00 0.00 0.00 3.33
7957 9240 3.935993 GCTTCACTGCCAGACCTAA 57.064 52.632 0.00 0.00 0.00 2.69
7966 9249 3.641437 TGTGTTTTATGGCTTCACTGC 57.359 42.857 0.00 0.00 0.00 4.40
8061 9405 8.719560 TTTGTACATTCGTGGCTTATAATACA 57.280 30.769 0.00 0.00 0.00 2.29
8075 9419 3.367025 GGAAGACGTCCTTTGTACATTCG 59.633 47.826 13.01 0.55 43.98 3.34
8135 9479 6.415573 AGAAATGGTACTCCTTGGTATTGTC 58.584 40.000 0.00 0.00 34.23 3.18
8145 9489 7.793948 AAGTAGTTGTAGAAATGGTACTCCT 57.206 36.000 0.00 0.00 34.23 3.69
8146 9490 8.843885 AAAAGTAGTTGTAGAAATGGTACTCC 57.156 34.615 0.00 0.00 0.00 3.85
8169 9513 6.360844 TCGACAACCGTTGAAGAATAAAAA 57.639 33.333 18.19 0.00 39.75 1.94
8183 9527 1.206578 GTTGGTGCATCGACAACCG 59.793 57.895 12.75 0.00 38.75 4.44
8246 9590 3.494924 GCCCAAGAAACCAAAAATGAGCT 60.495 43.478 0.00 0.00 0.00 4.09
8247 9591 2.807967 GCCCAAGAAACCAAAAATGAGC 59.192 45.455 0.00 0.00 0.00 4.26
8248 9592 3.059166 CGCCCAAGAAACCAAAAATGAG 58.941 45.455 0.00 0.00 0.00 2.90
8249 9593 2.224161 CCGCCCAAGAAACCAAAAATGA 60.224 45.455 0.00 0.00 0.00 2.57
8250 9594 2.142319 CCGCCCAAGAAACCAAAAATG 58.858 47.619 0.00 0.00 0.00 2.32
8251 9595 1.765904 ACCGCCCAAGAAACCAAAAAT 59.234 42.857 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.