Multiple sequence alignment - TraesCS3D01G163700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G163700 chr3D 100.000 3628 0 0 1 3628 135016878 135020505 0.000000e+00 6700.0
1 TraesCS3D01G163700 chr3D 97.468 316 8 0 2544 2859 149807217 149807532 1.150000e-149 540.0
2 TraesCS3D01G163700 chr3A 93.654 1308 53 19 1 1297 149924831 149926119 0.000000e+00 1929.0
3 TraesCS3D01G163700 chr3A 94.418 1254 66 3 1293 2544 149961390 149962641 0.000000e+00 1925.0
4 TraesCS3D01G163700 chr2D 98.831 770 9 0 2859 3628 80850465 80849696 0.000000e+00 1373.0
5 TraesCS3D01G163700 chr2D 98.700 769 10 0 2860 3628 549177442 549176674 0.000000e+00 1365.0
6 TraesCS3D01G163700 chr2D 97.179 319 9 0 2544 2862 136562447 136562765 1.150000e-149 540.0
7 TraesCS3D01G163700 chr5D 98.701 770 10 0 2859 3628 247601558 247602327 0.000000e+00 1367.0
8 TraesCS3D01G163700 chr5D 98.452 775 10 2 2856 3628 546811212 546811986 0.000000e+00 1363.0
9 TraesCS3D01G163700 chr5D 97.460 315 8 0 2545 2859 126344136 126343822 4.120000e-149 538.0
10 TraesCS3D01G163700 chr5D 96.594 323 9 2 2539 2859 62907434 62907756 5.330000e-148 534.0
11 TraesCS3D01G163700 chr4D 98.700 769 10 0 2860 3628 148380890 148381658 0.000000e+00 1365.0
12 TraesCS3D01G163700 chr4D 98.573 771 10 1 2859 3628 15138398 15139168 0.000000e+00 1362.0
13 TraesCS3D01G163700 chr4D 98.325 776 11 2 2854 3628 30132059 30132833 0.000000e+00 1360.0
14 TraesCS3D01G163700 chr7D 98.573 771 11 0 2858 3628 566986332 566985562 0.000000e+00 1363.0
15 TraesCS3D01G163700 chr7D 96.865 319 10 0 2544 2862 366597291 366596973 5.330000e-148 534.0
16 TraesCS3D01G163700 chr7D 96.573 321 11 0 2539 2859 310868605 310868925 1.920000e-147 532.0
17 TraesCS3D01G163700 chr6D 98.450 774 10 2 2855 3628 124836415 124837186 0.000000e+00 1362.0
18 TraesCS3D01G163700 chr6D 86.229 1249 109 30 26 1261 60550872 60549674 0.000000e+00 1295.0
19 TraesCS3D01G163700 chr6D 83.974 624 79 10 1922 2544 60548567 60547964 2.430000e-161 579.0
20 TraesCS3D01G163700 chr6D 82.353 170 27 2 1603 1771 60549166 60548999 1.050000e-30 145.0
21 TraesCS3D01G163700 chr6A 83.313 827 69 27 216 1022 77606262 77605485 0.000000e+00 699.0
22 TraesCS3D01G163700 chr6A 86.901 626 70 9 1921 2544 77539151 77538536 0.000000e+00 691.0
23 TraesCS3D01G163700 chr6A 81.834 589 58 23 689 1261 77540542 77539987 1.990000e-122 449.0
24 TraesCS3D01G163700 chr6A 89.848 197 14 5 1 194 77606521 77606328 7.780000e-62 248.0
25 TraesCS3D01G163700 chr6A 85.870 92 10 2 255 343 77540754 77540663 1.070000e-15 95.3
26 TraesCS3D01G163700 chr6B 82.785 790 79 30 501 1261 134829132 134828371 0.000000e+00 652.0
27 TraesCS3D01G163700 chr6B 90.717 474 38 5 28 499 134829708 134829239 8.550000e-176 627.0
28 TraesCS3D01G163700 chr6B 83.360 625 82 11 1921 2544 134826841 134826238 3.160000e-155 558.0
29 TraesCS3D01G163700 chr6B 85.886 333 40 6 1603 1929 134827202 134826871 7.460000e-92 348.0
30 TraesCS3D01G163700 chr6B 82.243 321 37 7 1603 1904 134827917 134827598 3.590000e-65 259.0
31 TraesCS3D01G163700 chr6B 92.857 56 4 0 1258 1313 134828349 134828294 8.350000e-12 82.4
32 TraesCS3D01G163700 chr1D 96.875 320 9 1 2540 2859 371191403 371191721 5.330000e-148 534.0
33 TraesCS3D01G163700 chr1D 96.308 325 11 1 2538 2862 284592115 284591792 1.920000e-147 532.0
34 TraesCS3D01G163700 chrUn 96.584 322 9 1 2540 2859 97198844 97199165 1.920000e-147 532.0
35 TraesCS3D01G163700 chr4B 83.333 120 18 2 26 145 538947540 538947423 3.830000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G163700 chr3D 135016878 135020505 3627 False 6700.000000 6700 100.000000 1 3628 1 chr3D.!!$F1 3627
1 TraesCS3D01G163700 chr3A 149924831 149926119 1288 False 1929.000000 1929 93.654000 1 1297 1 chr3A.!!$F1 1296
2 TraesCS3D01G163700 chr3A 149961390 149962641 1251 False 1925.000000 1925 94.418000 1293 2544 1 chr3A.!!$F2 1251
3 TraesCS3D01G163700 chr2D 80849696 80850465 769 True 1373.000000 1373 98.831000 2859 3628 1 chr2D.!!$R1 769
4 TraesCS3D01G163700 chr2D 549176674 549177442 768 True 1365.000000 1365 98.700000 2860 3628 1 chr2D.!!$R2 768
5 TraesCS3D01G163700 chr5D 247601558 247602327 769 False 1367.000000 1367 98.701000 2859 3628 1 chr5D.!!$F2 769
6 TraesCS3D01G163700 chr5D 546811212 546811986 774 False 1363.000000 1363 98.452000 2856 3628 1 chr5D.!!$F3 772
7 TraesCS3D01G163700 chr4D 148380890 148381658 768 False 1365.000000 1365 98.700000 2860 3628 1 chr4D.!!$F3 768
8 TraesCS3D01G163700 chr4D 15138398 15139168 770 False 1362.000000 1362 98.573000 2859 3628 1 chr4D.!!$F1 769
9 TraesCS3D01G163700 chr4D 30132059 30132833 774 False 1360.000000 1360 98.325000 2854 3628 1 chr4D.!!$F2 774
10 TraesCS3D01G163700 chr7D 566985562 566986332 770 True 1363.000000 1363 98.573000 2858 3628 1 chr7D.!!$R2 770
11 TraesCS3D01G163700 chr6D 124836415 124837186 771 False 1362.000000 1362 98.450000 2855 3628 1 chr6D.!!$F1 773
12 TraesCS3D01G163700 chr6D 60547964 60550872 2908 True 673.000000 1295 84.185333 26 2544 3 chr6D.!!$R1 2518
13 TraesCS3D01G163700 chr6A 77605485 77606521 1036 True 473.500000 699 86.580500 1 1022 2 chr6A.!!$R2 1021
14 TraesCS3D01G163700 chr6A 77538536 77540754 2218 True 411.766667 691 84.868333 255 2544 3 chr6A.!!$R1 2289
15 TraesCS3D01G163700 chr6B 134826238 134829708 3470 True 421.066667 652 86.308000 28 2544 6 chr6B.!!$R1 2516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 321 1.003118 CCTTGTAGCTTGTGCCCACTA 59.997 52.381 0.0 0.0 40.8 2.74 F
1091 1286 0.033504 GGAGCTTCTGGACGAACACA 59.966 55.000 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 3554 1.080298 GTTGTGGAGCATTGCAGGC 60.080 57.895 11.91 4.40 0.00 4.85 R
2855 4272 0.034896 ACTACGTTCCCCAACAGCTG 59.965 55.000 13.48 13.48 32.14 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 4.819630 ACAACAAACAAGATAAGCGAGGAA 59.180 37.500 0.00 0.00 0.00 3.36
126 128 9.008965 GTAACCCAAATTTAAAATTCAGGCAAT 57.991 29.630 0.00 0.00 0.00 3.56
276 321 1.003118 CCTTGTAGCTTGTGCCCACTA 59.997 52.381 0.00 0.00 40.80 2.74
391 441 8.141268 TCAACAATGATGATAATACGAGTGCTA 58.859 33.333 0.00 0.00 0.00 3.49
655 827 3.673746 TGTCGCTTTGTTCAGAAGTTG 57.326 42.857 0.00 0.00 0.00 3.16
669 842 7.121463 TGTTCAGAAGTTGAGTACTATCTCTCC 59.879 40.741 0.00 0.00 37.07 3.71
673 846 4.453751 AGTTGAGTACTATCTCTCCGTCC 58.546 47.826 0.00 0.00 34.56 4.79
697 870 8.097662 TCCCAAAATAAGTGTCAACAAAACTTT 58.902 29.630 0.00 0.00 35.77 2.66
809 993 8.591072 ACCTACAAAAGTGCTAGTACAATTAGA 58.409 33.333 13.75 0.00 0.00 2.10
814 998 6.808321 AAGTGCTAGTACAATTAGATCCCA 57.192 37.500 13.75 0.00 0.00 4.37
902 1091 6.485313 CAGATAAACAAACCTTGGACAGTACA 59.515 38.462 0.00 0.00 34.12 2.90
926 1115 5.799213 ACAAGTAAGAAAGAGCATAGCAGT 58.201 37.500 0.00 0.00 0.00 4.40
934 1123 4.478206 AAGAGCATAGCAGTAGCAAAGA 57.522 40.909 0.00 0.00 45.49 2.52
1026 1215 4.188462 CGTCCAATTAAGATGGTGCACTA 58.812 43.478 17.98 11.97 39.09 2.74
1027 1216 4.816385 CGTCCAATTAAGATGGTGCACTAT 59.184 41.667 16.40 16.40 39.09 2.12
1056 1245 7.735321 AGGTAGGAGACATGCCTAATTTATAGT 59.265 37.037 0.00 0.00 39.58 2.12
1067 1262 8.402798 TGCCTAATTTATAGTGAGAGAGAGAG 57.597 38.462 0.00 0.00 0.00 3.20
1091 1286 0.033504 GGAGCTTCTGGACGAACACA 59.966 55.000 0.00 0.00 0.00 3.72
1109 1308 5.452078 ACACAGAGAAAGAGAAGACAGAG 57.548 43.478 0.00 0.00 0.00 3.35
1306 1559 1.617018 AATGGCTCACCTGCGCTCTA 61.617 55.000 9.73 0.00 36.63 2.43
1389 1653 3.552604 TTTGTCCTGCTTATGCGAAAC 57.447 42.857 0.00 0.00 43.34 2.78
1401 1665 7.650890 TGCTTATGCGAAACAATTATCATCAT 58.349 30.769 0.00 0.00 43.34 2.45
1407 1671 8.531622 TGCGAAACAATTATCATCATGTTTTT 57.468 26.923 4.47 0.00 43.77 1.94
1433 1721 1.618837 TCAACTCTTCCCTCGGAACAG 59.381 52.381 0.00 0.00 36.71 3.16
1531 1899 8.713971 TGACCAAGTAACAATATGGACATCTAT 58.286 33.333 0.00 0.00 33.75 1.98
1534 1902 9.730705 CCAAGTAACAATATGGACATCTATGAT 57.269 33.333 0.00 0.00 34.82 2.45
1630 2760 9.811995 AAACTTGTCCAAGGTTTATAAAGTTTC 57.188 29.630 11.45 0.00 45.33 2.78
1652 2782 8.784043 GTTTCACTTGGAACACAACTAATATCT 58.216 33.333 0.00 0.00 39.29 1.98
1812 3184 6.152831 GTGGCTATTGTTGAAGGGTCTAAATT 59.847 38.462 0.00 0.00 0.00 1.82
1835 3207 9.627123 AATTATCTCGGAATATTCTTTTGTCCA 57.373 29.630 14.95 0.00 0.00 4.02
1876 3248 8.316946 TCAGCATATTTCTGAGGTCAATATAGG 58.683 37.037 1.35 0.00 35.81 2.57
1988 3404 3.788227 ACATAGTTTGACAGGCCTTGA 57.212 42.857 0.00 0.00 0.00 3.02
2041 3457 1.272592 TGCAGGATTGGATTGGAGCAA 60.273 47.619 0.00 0.00 0.00 3.91
2058 3475 2.818432 AGCAAAGCTTTCCATCTCACTG 59.182 45.455 9.23 0.00 33.89 3.66
2137 3554 0.108186 TCCTAACAGCATGGCTCACG 60.108 55.000 0.00 0.00 43.62 4.35
2258 3675 3.981071 ACCAGACCAAATCTCATCGAA 57.019 42.857 0.00 0.00 34.41 3.71
2262 3679 3.868077 CAGACCAAATCTCATCGAACTCC 59.132 47.826 0.00 0.00 34.41 3.85
2273 3690 4.278310 TCATCGAACTCCTCCACATTCTA 58.722 43.478 0.00 0.00 0.00 2.10
2494 3911 6.195600 ACTTCCTTAACCTATGTGGAAACA 57.804 37.500 0.00 0.00 36.52 2.83
2544 3961 0.333993 ATGCCCTGGCTTTCAGTGAT 59.666 50.000 9.97 0.00 41.83 3.06
2545 3962 0.609957 TGCCCTGGCTTTCAGTGATG 60.610 55.000 9.97 0.00 41.83 3.07
2546 3963 0.610232 GCCCTGGCTTTCAGTGATGT 60.610 55.000 0.00 0.00 41.83 3.06
2547 3964 1.340017 GCCCTGGCTTTCAGTGATGTA 60.340 52.381 0.00 0.00 41.83 2.29
2548 3965 2.636830 CCCTGGCTTTCAGTGATGTAG 58.363 52.381 0.00 0.00 41.83 2.74
2549 3966 2.012673 CCTGGCTTTCAGTGATGTAGC 58.987 52.381 11.82 11.82 41.83 3.58
2550 3967 1.662629 CTGGCTTTCAGTGATGTAGCG 59.337 52.381 13.17 1.73 38.64 4.26
2551 3968 1.275010 TGGCTTTCAGTGATGTAGCGA 59.725 47.619 13.17 8.78 32.74 4.93
2552 3969 1.661112 GGCTTTCAGTGATGTAGCGAC 59.339 52.381 13.17 0.00 32.74 5.19
2553 3970 1.661112 GCTTTCAGTGATGTAGCGACC 59.339 52.381 0.00 0.00 0.00 4.79
2554 3971 2.271800 CTTTCAGTGATGTAGCGACCC 58.728 52.381 0.00 0.00 0.00 4.46
2555 3972 0.172578 TTCAGTGATGTAGCGACCCG 59.827 55.000 0.00 0.00 0.00 5.28
2556 3973 0.678684 TCAGTGATGTAGCGACCCGA 60.679 55.000 0.00 0.00 0.00 5.14
2557 3974 0.525668 CAGTGATGTAGCGACCCGAC 60.526 60.000 0.00 0.00 0.00 4.79
2558 3975 1.226888 GTGATGTAGCGACCCGACC 60.227 63.158 0.00 0.00 0.00 4.79
2559 3976 2.416260 GATGTAGCGACCCGACCC 59.584 66.667 0.00 0.00 0.00 4.46
2560 3977 3.480225 GATGTAGCGACCCGACCCG 62.480 68.421 0.00 0.00 0.00 5.28
2561 3978 4.720902 TGTAGCGACCCGACCCGA 62.721 66.667 0.00 0.00 0.00 5.14
2562 3979 3.443045 GTAGCGACCCGACCCGAA 61.443 66.667 0.00 0.00 0.00 4.30
2563 3980 2.676121 TAGCGACCCGACCCGAAA 60.676 61.111 0.00 0.00 0.00 3.46
2564 3981 2.053865 TAGCGACCCGACCCGAAAT 61.054 57.895 0.00 0.00 0.00 2.17
2565 3982 2.008268 TAGCGACCCGACCCGAAATC 62.008 60.000 0.00 0.00 0.00 2.17
2566 3983 2.581409 CGACCCGACCCGAAATCG 60.581 66.667 0.00 0.00 39.33 3.34
2579 3996 2.947852 CGAAATCGGTCAAGTCTCTGT 58.052 47.619 0.00 0.00 35.37 3.41
2580 3997 2.663602 CGAAATCGGTCAAGTCTCTGTG 59.336 50.000 0.00 0.00 35.37 3.66
2581 3998 3.654414 GAAATCGGTCAAGTCTCTGTGT 58.346 45.455 0.00 0.00 0.00 3.72
2582 3999 4.615223 CGAAATCGGTCAAGTCTCTGTGTA 60.615 45.833 0.00 0.00 35.37 2.90
2583 4000 4.442375 AATCGGTCAAGTCTCTGTGTAG 57.558 45.455 0.00 0.00 0.00 2.74
2584 4001 1.540267 TCGGTCAAGTCTCTGTGTAGC 59.460 52.381 0.00 0.00 0.00 3.58
2585 4002 1.542030 CGGTCAAGTCTCTGTGTAGCT 59.458 52.381 0.00 0.00 0.00 3.32
2586 4003 2.669670 CGGTCAAGTCTCTGTGTAGCTG 60.670 54.545 0.00 0.00 0.00 4.24
2587 4004 2.297597 GGTCAAGTCTCTGTGTAGCTGT 59.702 50.000 0.00 0.00 0.00 4.40
2588 4005 3.506455 GGTCAAGTCTCTGTGTAGCTGTA 59.494 47.826 0.00 0.00 0.00 2.74
2589 4006 4.158764 GGTCAAGTCTCTGTGTAGCTGTAT 59.841 45.833 0.00 0.00 0.00 2.29
2590 4007 5.336744 GTCAAGTCTCTGTGTAGCTGTATC 58.663 45.833 0.00 0.00 0.00 2.24
2591 4008 5.010282 TCAAGTCTCTGTGTAGCTGTATCA 58.990 41.667 0.00 0.00 0.00 2.15
2592 4009 5.654209 TCAAGTCTCTGTGTAGCTGTATCAT 59.346 40.000 0.00 0.00 0.00 2.45
2593 4010 5.766150 AGTCTCTGTGTAGCTGTATCATC 57.234 43.478 0.00 0.00 0.00 2.92
2594 4011 4.582656 AGTCTCTGTGTAGCTGTATCATCC 59.417 45.833 0.00 0.00 0.00 3.51
2595 4012 3.891977 TCTCTGTGTAGCTGTATCATCCC 59.108 47.826 0.00 0.00 0.00 3.85
2596 4013 3.638627 CTCTGTGTAGCTGTATCATCCCA 59.361 47.826 0.00 0.00 0.00 4.37
2597 4014 4.030216 TCTGTGTAGCTGTATCATCCCAA 58.970 43.478 0.00 0.00 0.00 4.12
2598 4015 4.469586 TCTGTGTAGCTGTATCATCCCAAA 59.530 41.667 0.00 0.00 0.00 3.28
2599 4016 5.045942 TCTGTGTAGCTGTATCATCCCAAAA 60.046 40.000 0.00 0.00 0.00 2.44
2600 4017 5.754782 TGTGTAGCTGTATCATCCCAAAAT 58.245 37.500 0.00 0.00 0.00 1.82
2601 4018 5.822519 TGTGTAGCTGTATCATCCCAAAATC 59.177 40.000 0.00 0.00 0.00 2.17
2602 4019 5.822519 GTGTAGCTGTATCATCCCAAAATCA 59.177 40.000 0.00 0.00 0.00 2.57
2603 4020 6.488006 GTGTAGCTGTATCATCCCAAAATCAT 59.512 38.462 0.00 0.00 0.00 2.45
2604 4021 6.487668 TGTAGCTGTATCATCCCAAAATCATG 59.512 38.462 0.00 0.00 0.00 3.07
2605 4022 4.280174 AGCTGTATCATCCCAAAATCATGC 59.720 41.667 0.00 0.00 0.00 4.06
2606 4023 4.280174 GCTGTATCATCCCAAAATCATGCT 59.720 41.667 0.00 0.00 0.00 3.79
2607 4024 5.769367 CTGTATCATCCCAAAATCATGCTG 58.231 41.667 0.00 0.00 0.00 4.41
2608 4025 4.585581 TGTATCATCCCAAAATCATGCTGG 59.414 41.667 0.00 0.00 0.00 4.85
2609 4026 1.758280 TCATCCCAAAATCATGCTGGC 59.242 47.619 0.00 0.00 0.00 4.85
2610 4027 1.483004 CATCCCAAAATCATGCTGGCA 59.517 47.619 0.00 0.00 0.00 4.92
2611 4028 0.896923 TCCCAAAATCATGCTGGCAC 59.103 50.000 0.00 0.00 0.00 5.01
2612 4029 0.609151 CCCAAAATCATGCTGGCACA 59.391 50.000 0.00 0.00 0.00 4.57
2613 4030 1.673626 CCCAAAATCATGCTGGCACAC 60.674 52.381 0.00 0.00 0.00 3.82
2614 4031 1.001068 CCAAAATCATGCTGGCACACA 59.999 47.619 0.00 0.00 0.00 3.72
2615 4032 2.063266 CAAAATCATGCTGGCACACAC 58.937 47.619 0.00 0.00 0.00 3.82
2616 4033 1.330234 AAATCATGCTGGCACACACA 58.670 45.000 0.00 0.00 0.00 3.72
2617 4034 0.885879 AATCATGCTGGCACACACAG 59.114 50.000 0.00 0.00 38.95 3.66
2618 4035 0.251033 ATCATGCTGGCACACACAGT 60.251 50.000 0.00 0.00 38.22 3.55
2619 4036 0.396060 TCATGCTGGCACACACAGTA 59.604 50.000 0.00 0.00 38.22 2.74
2620 4037 0.518636 CATGCTGGCACACACAGTAC 59.481 55.000 0.00 0.00 38.22 2.73
2621 4038 0.108396 ATGCTGGCACACACAGTACA 59.892 50.000 0.00 0.00 38.22 2.90
2622 4039 0.108396 TGCTGGCACACACAGTACAT 59.892 50.000 0.00 0.00 38.22 2.29
2623 4040 1.238439 GCTGGCACACACAGTACATT 58.762 50.000 0.00 0.00 38.22 2.71
2624 4041 1.069022 GCTGGCACACACAGTACATTG 60.069 52.381 0.00 0.00 38.22 2.82
2625 4042 2.493035 CTGGCACACACAGTACATTGA 58.507 47.619 0.00 0.00 0.00 2.57
2626 4043 3.076621 CTGGCACACACAGTACATTGAT 58.923 45.455 0.00 0.00 0.00 2.57
2627 4044 2.813172 TGGCACACACAGTACATTGATG 59.187 45.455 0.00 0.00 0.00 3.07
2628 4045 2.414559 GGCACACACAGTACATTGATGC 60.415 50.000 14.01 14.01 0.00 3.91
2629 4046 2.226200 GCACACACAGTACATTGATGCA 59.774 45.455 15.91 0.00 32.27 3.96
2630 4047 3.304592 GCACACACAGTACATTGATGCAA 60.305 43.478 15.91 0.00 32.27 4.08
2631 4048 4.792380 GCACACACAGTACATTGATGCAAA 60.792 41.667 15.91 0.00 32.27 3.68
2632 4049 4.913345 CACACACAGTACATTGATGCAAAG 59.087 41.667 0.00 0.00 0.00 2.77
2633 4050 4.821260 ACACACAGTACATTGATGCAAAGA 59.179 37.500 0.00 0.00 0.00 2.52
2634 4051 5.474532 ACACACAGTACATTGATGCAAAGAT 59.525 36.000 0.00 0.00 0.00 2.40
2635 4052 6.016024 ACACACAGTACATTGATGCAAAGATT 60.016 34.615 0.00 0.00 0.00 2.40
2636 4053 6.525628 CACACAGTACATTGATGCAAAGATTC 59.474 38.462 0.00 0.00 0.00 2.52
2637 4054 6.207221 ACACAGTACATTGATGCAAAGATTCA 59.793 34.615 0.00 0.00 0.00 2.57
2638 4055 7.085746 CACAGTACATTGATGCAAAGATTCAA 58.914 34.615 2.36 2.36 34.18 2.69
2639 4056 7.595875 CACAGTACATTGATGCAAAGATTCAAA 59.404 33.333 3.94 0.00 33.45 2.69
2640 4057 7.811236 ACAGTACATTGATGCAAAGATTCAAAG 59.189 33.333 3.94 2.76 33.45 2.77
2641 4058 7.811236 CAGTACATTGATGCAAAGATTCAAAGT 59.189 33.333 11.31 11.31 35.95 2.66
2642 4059 8.362639 AGTACATTGATGCAAAGATTCAAAGTT 58.637 29.630 11.70 0.40 34.36 2.66
2643 4060 7.647907 ACATTGATGCAAAGATTCAAAGTTC 57.352 32.000 3.94 0.00 33.45 3.01
2644 4061 7.211573 ACATTGATGCAAAGATTCAAAGTTCA 58.788 30.769 3.94 0.00 33.45 3.18
2645 4062 7.711772 ACATTGATGCAAAGATTCAAAGTTCAA 59.288 29.630 3.94 0.00 33.45 2.69
2646 4063 8.717821 CATTGATGCAAAGATTCAAAGTTCAAT 58.282 29.630 3.94 1.33 33.45 2.57
2647 4064 7.878477 TGATGCAAAGATTCAAAGTTCAATC 57.122 32.000 0.00 0.96 0.00 2.67
2648 4065 7.435305 TGATGCAAAGATTCAAAGTTCAATCA 58.565 30.769 0.00 0.00 32.28 2.57
2649 4066 7.383029 TGATGCAAAGATTCAAAGTTCAATCAC 59.617 33.333 0.00 0.00 32.28 3.06
2650 4067 6.571605 TGCAAAGATTCAAAGTTCAATCACA 58.428 32.000 9.20 1.84 32.28 3.58
2651 4068 6.476380 TGCAAAGATTCAAAGTTCAATCACAC 59.524 34.615 9.20 0.00 32.28 3.82
2652 4069 6.074142 GCAAAGATTCAAAGTTCAATCACACC 60.074 38.462 9.20 0.00 32.28 4.16
2653 4070 6.966534 AAGATTCAAAGTTCAATCACACCT 57.033 33.333 9.20 0.00 32.28 4.00
2654 4071 6.323203 AGATTCAAAGTTCAATCACACCTG 57.677 37.500 9.20 0.00 32.28 4.00
2655 4072 6.064060 AGATTCAAAGTTCAATCACACCTGA 58.936 36.000 9.20 0.00 32.28 3.86
2656 4073 6.547141 AGATTCAAAGTTCAATCACACCTGAA 59.453 34.615 9.20 0.00 32.28 3.02
2657 4074 6.713762 TTCAAAGTTCAATCACACCTGAAT 57.286 33.333 0.00 0.00 34.26 2.57
2658 4075 6.713762 TCAAAGTTCAATCACACCTGAATT 57.286 33.333 0.00 0.00 34.26 2.17
2659 4076 7.111247 TCAAAGTTCAATCACACCTGAATTT 57.889 32.000 0.00 0.00 34.19 1.82
2660 4077 8.231692 TCAAAGTTCAATCACACCTGAATTTA 57.768 30.769 0.00 0.00 32.31 1.40
2661 4078 8.859090 TCAAAGTTCAATCACACCTGAATTTAT 58.141 29.630 0.00 0.00 32.31 1.40
2662 4079 9.480053 CAAAGTTCAATCACACCTGAATTTATT 57.520 29.630 0.00 0.00 32.31 1.40
2665 4082 9.295825 AGTTCAATCACACCTGAATTTATTACA 57.704 29.630 0.00 0.00 34.26 2.41
2666 4083 9.341899 GTTCAATCACACCTGAATTTATTACAC 57.658 33.333 0.00 0.00 34.26 2.90
2667 4084 7.747888 TCAATCACACCTGAATTTATTACACG 58.252 34.615 0.00 0.00 0.00 4.49
2668 4085 7.604545 TCAATCACACCTGAATTTATTACACGA 59.395 33.333 0.00 0.00 0.00 4.35
2669 4086 8.397906 CAATCACACCTGAATTTATTACACGAT 58.602 33.333 0.00 0.00 0.00 3.73
2670 4087 7.915293 TCACACCTGAATTTATTACACGATT 57.085 32.000 0.00 0.00 0.00 3.34
2671 4088 7.970384 TCACACCTGAATTTATTACACGATTC 58.030 34.615 0.00 0.00 0.00 2.52
2672 4089 7.822334 TCACACCTGAATTTATTACACGATTCT 59.178 33.333 0.00 0.00 31.48 2.40
2673 4090 8.116753 CACACCTGAATTTATTACACGATTCTC 58.883 37.037 0.00 0.00 31.48 2.87
2674 4091 7.822334 ACACCTGAATTTATTACACGATTCTCA 59.178 33.333 0.00 0.00 31.48 3.27
2675 4092 8.664798 CACCTGAATTTATTACACGATTCTCAA 58.335 33.333 0.00 0.00 31.48 3.02
2676 4093 9.226606 ACCTGAATTTATTACACGATTCTCAAA 57.773 29.630 0.00 0.00 31.48 2.69
2695 4112 9.869757 TTCTCAAATCGAGTCTTTATTACATCA 57.130 29.630 0.00 0.00 42.88 3.07
2711 4128 7.915293 ATTACATCATAATAAATTCGGCCGA 57.085 32.000 27.28 27.28 0.00 5.54
2712 4129 7.731882 TTACATCATAATAAATTCGGCCGAA 57.268 32.000 40.11 40.11 38.59 4.30
2713 4130 6.241207 ACATCATAATAAATTCGGCCGAAG 57.759 37.500 40.09 25.85 37.56 3.79
2727 4144 2.042686 CCGAAGGCCAATTCATGAGA 57.957 50.000 5.01 0.00 46.14 3.27
2728 4145 2.368439 CCGAAGGCCAATTCATGAGAA 58.632 47.619 5.01 0.00 46.14 2.87
2729 4146 2.754552 CCGAAGGCCAATTCATGAGAAA 59.245 45.455 5.01 0.00 46.14 2.52
2730 4147 3.382546 CCGAAGGCCAATTCATGAGAAAT 59.617 43.478 5.01 0.00 46.14 2.17
2731 4148 4.580167 CCGAAGGCCAATTCATGAGAAATA 59.420 41.667 5.01 0.00 46.14 1.40
2732 4149 5.067674 CCGAAGGCCAATTCATGAGAAATAA 59.932 40.000 5.01 0.00 46.14 1.40
2733 4150 6.405731 CCGAAGGCCAATTCATGAGAAATAAA 60.406 38.462 5.01 0.00 46.14 1.40
2734 4151 6.473455 CGAAGGCCAATTCATGAGAAATAAAC 59.527 38.462 5.01 0.00 37.29 2.01
2735 4152 7.486407 AAGGCCAATTCATGAGAAATAAACT 57.514 32.000 5.01 0.00 37.29 2.66
2736 4153 8.593945 AAGGCCAATTCATGAGAAATAAACTA 57.406 30.769 5.01 0.00 37.29 2.24
2737 4154 8.593945 AGGCCAATTCATGAGAAATAAACTAA 57.406 30.769 5.01 0.00 37.29 2.24
2738 4155 9.034800 AGGCCAATTCATGAGAAATAAACTAAA 57.965 29.630 5.01 0.00 37.29 1.85
2739 4156 9.822185 GGCCAATTCATGAGAAATAAACTAAAT 57.178 29.630 0.00 0.00 37.29 1.40
2748 4165 9.722056 ATGAGAAATAAACTAAATAAAGCTGCG 57.278 29.630 0.00 0.00 0.00 5.18
2749 4166 8.181573 TGAGAAATAAACTAAATAAAGCTGCGG 58.818 33.333 0.00 0.00 0.00 5.69
2750 4167 8.276252 AGAAATAAACTAAATAAAGCTGCGGA 57.724 30.769 0.00 0.00 0.00 5.54
2751 4168 8.736244 AGAAATAAACTAAATAAAGCTGCGGAA 58.264 29.630 0.00 0.00 0.00 4.30
2752 4169 9.349145 GAAATAAACTAAATAAAGCTGCGGAAA 57.651 29.630 0.00 0.00 0.00 3.13
2753 4170 8.683550 AATAAACTAAATAAAGCTGCGGAAAC 57.316 30.769 0.00 0.00 0.00 2.78
2754 4171 5.699097 AACTAAATAAAGCTGCGGAAACA 57.301 34.783 0.00 0.00 0.00 2.83
2755 4172 5.897377 ACTAAATAAAGCTGCGGAAACAT 57.103 34.783 0.00 0.00 0.00 2.71
2756 4173 6.995511 ACTAAATAAAGCTGCGGAAACATA 57.004 33.333 0.00 0.00 0.00 2.29
2757 4174 7.016361 ACTAAATAAAGCTGCGGAAACATAG 57.984 36.000 0.00 0.00 0.00 2.23
2758 4175 6.821665 ACTAAATAAAGCTGCGGAAACATAGA 59.178 34.615 0.00 0.00 0.00 1.98
2759 4176 5.485662 AATAAAGCTGCGGAAACATAGAC 57.514 39.130 0.00 0.00 0.00 2.59
2760 4177 1.359848 AAGCTGCGGAAACATAGACG 58.640 50.000 0.00 0.00 0.00 4.18
2761 4178 0.530744 AGCTGCGGAAACATAGACGA 59.469 50.000 0.00 0.00 0.00 4.20
2762 4179 1.067142 AGCTGCGGAAACATAGACGAA 60.067 47.619 0.00 0.00 0.00 3.85
2763 4180 1.933853 GCTGCGGAAACATAGACGAAT 59.066 47.619 0.00 0.00 0.00 3.34
2764 4181 3.120792 GCTGCGGAAACATAGACGAATA 58.879 45.455 0.00 0.00 0.00 1.75
2765 4182 3.182572 GCTGCGGAAACATAGACGAATAG 59.817 47.826 0.00 0.00 0.00 1.73
2766 4183 3.120792 TGCGGAAACATAGACGAATAGC 58.879 45.455 0.00 0.00 0.00 2.97
2768 4185 3.624900 CGGAAACATAGACGAATAGCGA 58.375 45.455 0.00 0.00 44.57 4.93
2769 4186 3.664486 CGGAAACATAGACGAATAGCGAG 59.336 47.826 0.00 0.00 44.57 5.03
2770 4187 4.608951 GGAAACATAGACGAATAGCGAGT 58.391 43.478 0.00 0.00 44.57 4.18
2771 4188 4.676018 GGAAACATAGACGAATAGCGAGTC 59.324 45.833 0.00 0.00 44.57 3.36
2772 4189 3.900388 ACATAGACGAATAGCGAGTCC 57.100 47.619 0.00 0.00 44.57 3.85
2773 4190 3.211865 ACATAGACGAATAGCGAGTCCA 58.788 45.455 0.00 0.00 44.57 4.02
2774 4191 3.821600 ACATAGACGAATAGCGAGTCCAT 59.178 43.478 0.00 0.00 44.57 3.41
2775 4192 4.083217 ACATAGACGAATAGCGAGTCCATC 60.083 45.833 0.00 0.00 44.57 3.51
2776 4193 1.609555 AGACGAATAGCGAGTCCATCC 59.390 52.381 0.00 0.00 44.57 3.51
2777 4194 0.311165 ACGAATAGCGAGTCCATCCG 59.689 55.000 0.00 0.00 44.57 4.18
2778 4195 0.591659 CGAATAGCGAGTCCATCCGA 59.408 55.000 0.00 0.00 44.57 4.55
2779 4196 1.663445 CGAATAGCGAGTCCATCCGAC 60.663 57.143 0.00 0.00 44.57 4.79
2787 4204 1.517832 GTCCATCCGACTCCACAGG 59.482 63.158 0.00 0.00 38.57 4.00
2788 4205 1.685765 TCCATCCGACTCCACAGGG 60.686 63.158 0.00 0.00 0.00 4.45
2789 4206 2.187946 CATCCGACTCCACAGGGC 59.812 66.667 0.00 0.00 0.00 5.19
2790 4207 2.284625 ATCCGACTCCACAGGGCA 60.285 61.111 0.00 0.00 0.00 5.36
2791 4208 1.918293 ATCCGACTCCACAGGGCAA 60.918 57.895 0.00 0.00 0.00 4.52
2792 4209 1.274703 ATCCGACTCCACAGGGCAAT 61.275 55.000 0.00 0.00 0.00 3.56
2793 4210 1.450312 CCGACTCCACAGGGCAATC 60.450 63.158 0.00 0.00 0.00 2.67
2794 4211 1.811266 CGACTCCACAGGGCAATCG 60.811 63.158 0.00 0.00 0.00 3.34
2795 4212 2.045926 ACTCCACAGGGCAATCGC 60.046 61.111 0.00 0.00 37.44 4.58
2813 4230 3.706140 CAAGCGTGGATCGTAGCC 58.294 61.111 0.00 0.00 42.13 3.93
2814 4231 1.141881 CAAGCGTGGATCGTAGCCT 59.858 57.895 0.00 0.00 42.13 4.58
2815 4232 0.872021 CAAGCGTGGATCGTAGCCTC 60.872 60.000 0.00 0.00 42.13 4.70
2816 4233 1.320344 AAGCGTGGATCGTAGCCTCA 61.320 55.000 2.02 0.00 42.13 3.86
2817 4234 1.589196 GCGTGGATCGTAGCCTCAC 60.589 63.158 0.00 0.00 42.13 3.51
2818 4235 2.005960 GCGTGGATCGTAGCCTCACT 62.006 60.000 0.00 0.00 42.13 3.41
2819 4236 0.029567 CGTGGATCGTAGCCTCACTC 59.970 60.000 0.00 0.00 34.52 3.51
2820 4237 0.386113 GTGGATCGTAGCCTCACTCC 59.614 60.000 0.00 0.00 0.00 3.85
2821 4238 0.259065 TGGATCGTAGCCTCACTCCT 59.741 55.000 0.00 0.00 0.00 3.69
2822 4239 0.671251 GGATCGTAGCCTCACTCCTG 59.329 60.000 0.00 0.00 0.00 3.86
2823 4240 1.681538 GATCGTAGCCTCACTCCTGA 58.318 55.000 0.00 0.00 0.00 3.86
2824 4241 2.235016 GATCGTAGCCTCACTCCTGAT 58.765 52.381 0.00 0.00 0.00 2.90
2825 4242 1.681538 TCGTAGCCTCACTCCTGATC 58.318 55.000 0.00 0.00 0.00 2.92
2826 4243 0.309302 CGTAGCCTCACTCCTGATCG 59.691 60.000 0.00 0.00 0.00 3.69
2827 4244 0.671251 GTAGCCTCACTCCTGATCGG 59.329 60.000 0.00 0.00 0.00 4.18
2828 4245 0.551396 TAGCCTCACTCCTGATCGGA 59.449 55.000 2.08 4.61 40.30 4.55
2829 4246 0.324738 AGCCTCACTCCTGATCGGAA 60.325 55.000 2.08 0.00 42.53 4.30
2830 4247 0.537188 GCCTCACTCCTGATCGGAAA 59.463 55.000 2.08 0.00 42.53 3.13
2831 4248 1.066143 GCCTCACTCCTGATCGGAAAA 60.066 52.381 2.08 0.00 42.53 2.29
2832 4249 2.420687 GCCTCACTCCTGATCGGAAAAT 60.421 50.000 2.08 0.00 42.53 1.82
2833 4250 3.878778 CCTCACTCCTGATCGGAAAATT 58.121 45.455 2.08 0.00 42.53 1.82
2834 4251 3.873952 CCTCACTCCTGATCGGAAAATTC 59.126 47.826 2.08 0.00 42.53 2.17
2835 4252 3.873910 TCACTCCTGATCGGAAAATTCC 58.126 45.455 2.08 1.92 42.53 3.01
2836 4253 3.519510 TCACTCCTGATCGGAAAATTCCT 59.480 43.478 2.08 0.00 45.33 3.36
2837 4254 3.873952 CACTCCTGATCGGAAAATTCCTC 59.126 47.826 2.08 3.06 45.33 3.71
2838 4255 3.777522 ACTCCTGATCGGAAAATTCCTCT 59.222 43.478 2.08 0.00 45.33 3.69
2839 4256 4.125703 CTCCTGATCGGAAAATTCCTCTG 58.874 47.826 2.08 6.12 45.33 3.35
2840 4257 2.615912 CCTGATCGGAAAATTCCTCTGC 59.384 50.000 2.08 0.00 45.33 4.26
2841 4258 3.273434 CTGATCGGAAAATTCCTCTGCA 58.727 45.455 10.31 0.00 45.33 4.41
2842 4259 3.684908 TGATCGGAAAATTCCTCTGCAA 58.315 40.909 10.31 0.00 45.33 4.08
2843 4260 3.440173 TGATCGGAAAATTCCTCTGCAAC 59.560 43.478 10.31 0.00 45.33 4.17
2844 4261 2.857483 TCGGAAAATTCCTCTGCAACA 58.143 42.857 10.31 0.00 45.33 3.33
2845 4262 3.420893 TCGGAAAATTCCTCTGCAACAT 58.579 40.909 10.31 0.00 45.33 2.71
2846 4263 4.584874 TCGGAAAATTCCTCTGCAACATA 58.415 39.130 10.31 0.00 45.33 2.29
2847 4264 5.007034 TCGGAAAATTCCTCTGCAACATAA 58.993 37.500 10.31 0.00 45.33 1.90
2848 4265 5.123820 TCGGAAAATTCCTCTGCAACATAAG 59.876 40.000 10.31 0.00 45.33 1.73
2849 4266 5.123820 CGGAAAATTCCTCTGCAACATAAGA 59.876 40.000 10.31 0.00 45.33 2.10
2850 4267 6.325596 GGAAAATTCCTCTGCAACATAAGAC 58.674 40.000 4.91 0.00 44.11 3.01
2851 4268 5.551760 AAATTCCTCTGCAACATAAGACG 57.448 39.130 0.00 0.00 0.00 4.18
2852 4269 3.678056 TTCCTCTGCAACATAAGACGT 57.322 42.857 0.00 0.00 0.00 4.34
2853 4270 3.678056 TCCTCTGCAACATAAGACGTT 57.322 42.857 0.00 0.00 0.00 3.99
2854 4271 3.325870 TCCTCTGCAACATAAGACGTTG 58.674 45.455 0.00 0.00 45.25 4.10
2922 4339 4.577693 ACACAAGATCATGGTGATGCATAC 59.422 41.667 15.51 0.00 37.20 2.39
3070 4487 2.287427 CCGAGTTCTACACACGTTCAGT 60.287 50.000 0.00 0.00 37.75 3.41
3215 4632 7.576287 CGGTATTATCGAGGTGTAATATGGTGT 60.576 40.741 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 6.856426 GCTTATCTTGTTTGTTGTACTGGTTC 59.144 38.462 0.00 0.00 0.00 3.62
276 321 0.396435 TCCTGAACCAACGTGCTCAT 59.604 50.000 0.00 0.00 0.00 2.90
370 420 8.341892 TCTCTAGCACTCGTATTATCATCATT 57.658 34.615 0.00 0.00 0.00 2.57
391 441 2.110543 AGCTATCTCTGAGGGCATCTCT 59.889 50.000 4.59 0.00 42.86 3.10
463 513 1.133637 TGAACTGGTTTAGCAAGGCCA 60.134 47.619 5.01 0.00 0.00 5.36
611 783 4.060900 GTTGACCTGATCATACGATGCAT 58.939 43.478 0.00 0.00 37.11 3.96
655 827 3.488778 TGGGACGGAGAGATAGTACTC 57.511 52.381 0.00 0.00 37.19 2.59
669 842 4.822036 TGTTGACACTTATTTTGGGACG 57.178 40.909 0.00 0.00 0.00 4.79
697 870 9.826574 AGTTTTTATCCTAGCAATATTCGTACA 57.173 29.630 0.00 0.00 0.00 2.90
846 1032 7.328982 CACATTTTACTTTTAGTCATGCATGCA 59.671 33.333 25.04 25.04 0.00 3.96
902 1091 6.234177 ACTGCTATGCTCTTTCTTACTTGTT 58.766 36.000 0.00 0.00 0.00 2.83
926 1115 5.008019 CAGTTGCTTTCTCTTGTCTTTGCTA 59.992 40.000 0.00 0.00 0.00 3.49
934 1123 5.242393 ACAATATGCAGTTGCTTTCTCTTGT 59.758 36.000 12.94 4.53 42.66 3.16
1026 1215 7.394144 AATTAGGCATGTCTCCTACCTTTAT 57.606 36.000 1.25 0.00 36.02 1.40
1027 1216 6.824958 AATTAGGCATGTCTCCTACCTTTA 57.175 37.500 1.25 0.00 36.02 1.85
1056 1245 1.064758 GCTCCCTGTCTCTCTCTCTCA 60.065 57.143 0.00 0.00 0.00 3.27
1067 1262 1.216710 CGTCCAGAAGCTCCCTGTC 59.783 63.158 13.10 6.80 0.00 3.51
1091 1286 4.396357 TCCCTCTGTCTTCTCTTTCTCT 57.604 45.455 0.00 0.00 0.00 3.10
1109 1308 4.775253 CCTCTAACTTCCTCCTATGATCCC 59.225 50.000 0.00 0.00 0.00 3.85
1389 1653 9.791820 TGAGCTACAAAAACATGATGATAATTG 57.208 29.630 0.00 0.00 0.00 2.32
1401 1665 4.578928 GGGAAGAGTTGAGCTACAAAAACA 59.421 41.667 0.00 0.00 40.36 2.83
1407 1671 1.819288 CGAGGGAAGAGTTGAGCTACA 59.181 52.381 0.00 0.00 0.00 2.74
1433 1721 2.567615 TGGCTAGGGAAGAGTTGAGTTC 59.432 50.000 0.00 0.00 0.00 3.01
1541 1909 8.502738 ACCATCCCTTGAGTATATTTACACAAT 58.497 33.333 6.64 0.00 37.96 2.71
1555 1943 3.652057 ACCACAATACCATCCCTTGAG 57.348 47.619 0.00 0.00 0.00 3.02
1562 1950 8.677148 AACATCTACAATACCACAATACCATC 57.323 34.615 0.00 0.00 0.00 3.51
1630 2760 9.307121 CTCTAGATATTAGTTGTGTTCCAAGTG 57.693 37.037 0.00 0.00 37.30 3.16
1673 2803 9.388506 CATGTGTAAGGAGAAAAGATAGACATT 57.611 33.333 0.00 0.00 30.75 2.71
2041 3457 2.039480 TGAGCAGTGAGATGGAAAGCTT 59.961 45.455 0.00 0.00 0.00 3.74
2058 3475 5.314923 TCATTGTGCCTTAGAAAATGAGC 57.685 39.130 0.00 0.00 33.50 4.26
2137 3554 1.080298 GTTGTGGAGCATTGCAGGC 60.080 57.895 11.91 4.40 0.00 4.85
2258 3675 3.683847 GCTTGCATAGAATGTGGAGGAGT 60.684 47.826 0.00 0.00 0.00 3.85
2262 3679 4.224715 CATGCTTGCATAGAATGTGGAG 57.775 45.455 7.84 0.00 35.44 3.86
2273 3690 2.868583 GACGATGAGTACATGCTTGCAT 59.131 45.455 1.81 1.81 36.82 3.96
2329 3746 0.185901 TGAGGCAGGAAAGGCAAACT 59.814 50.000 0.00 0.00 36.37 2.66
2494 3911 2.300437 GGTGGAAGCTACTGTCAGAAGT 59.700 50.000 6.91 0.00 0.00 3.01
2544 3961 4.720902 TCGGGTCGGGTCGCTACA 62.721 66.667 0.00 0.00 0.00 2.74
2545 3962 2.288788 ATTTCGGGTCGGGTCGCTAC 62.289 60.000 0.00 0.00 0.00 3.58
2546 3963 2.008268 GATTTCGGGTCGGGTCGCTA 62.008 60.000 0.00 0.00 0.00 4.26
2547 3964 3.366739 GATTTCGGGTCGGGTCGCT 62.367 63.158 0.00 0.00 0.00 4.93
2548 3965 2.889018 GATTTCGGGTCGGGTCGC 60.889 66.667 0.00 0.00 0.00 5.19
2549 3966 2.581409 CGATTTCGGGTCGGGTCG 60.581 66.667 0.00 0.00 35.55 4.79
2559 3976 2.663602 CACAGAGACTTGACCGATTTCG 59.336 50.000 0.00 0.00 39.44 3.46
2560 3977 3.654414 ACACAGAGACTTGACCGATTTC 58.346 45.455 0.00 0.00 0.00 2.17
2561 3978 3.753294 ACACAGAGACTTGACCGATTT 57.247 42.857 0.00 0.00 0.00 2.17
2562 3979 3.367498 GCTACACAGAGACTTGACCGATT 60.367 47.826 0.00 0.00 0.00 3.34
2563 3980 2.164624 GCTACACAGAGACTTGACCGAT 59.835 50.000 0.00 0.00 0.00 4.18
2564 3981 1.540267 GCTACACAGAGACTTGACCGA 59.460 52.381 0.00 0.00 0.00 4.69
2565 3982 1.542030 AGCTACACAGAGACTTGACCG 59.458 52.381 0.00 0.00 0.00 4.79
2566 3983 2.297597 ACAGCTACACAGAGACTTGACC 59.702 50.000 0.00 0.00 0.00 4.02
2567 3984 3.651803 ACAGCTACACAGAGACTTGAC 57.348 47.619 0.00 0.00 0.00 3.18
2568 3985 5.010282 TGATACAGCTACACAGAGACTTGA 58.990 41.667 0.00 0.00 0.00 3.02
2569 3986 5.316327 TGATACAGCTACACAGAGACTTG 57.684 43.478 0.00 0.00 0.00 3.16
2570 3987 5.068460 GGATGATACAGCTACACAGAGACTT 59.932 44.000 0.00 0.00 0.00 3.01
2571 3988 4.582656 GGATGATACAGCTACACAGAGACT 59.417 45.833 0.00 0.00 0.00 3.24
2572 3989 4.261825 GGGATGATACAGCTACACAGAGAC 60.262 50.000 0.00 0.00 0.00 3.36
2573 3990 3.891977 GGGATGATACAGCTACACAGAGA 59.108 47.826 0.00 0.00 0.00 3.10
2574 3991 3.638627 TGGGATGATACAGCTACACAGAG 59.361 47.826 0.00 0.00 0.00 3.35
2575 3992 3.642141 TGGGATGATACAGCTACACAGA 58.358 45.455 0.00 0.00 0.00 3.41
2576 3993 4.406648 TTGGGATGATACAGCTACACAG 57.593 45.455 0.00 0.00 0.00 3.66
2577 3994 4.835284 TTTGGGATGATACAGCTACACA 57.165 40.909 0.00 0.00 0.00 3.72
2578 3995 5.822519 TGATTTTGGGATGATACAGCTACAC 59.177 40.000 0.00 0.00 0.00 2.90
2579 3996 6.000246 TGATTTTGGGATGATACAGCTACA 58.000 37.500 0.00 0.00 0.00 2.74
2580 3997 6.569226 GCATGATTTTGGGATGATACAGCTAC 60.569 42.308 0.00 0.00 0.00 3.58
2581 3998 5.474532 GCATGATTTTGGGATGATACAGCTA 59.525 40.000 0.00 0.00 0.00 3.32
2582 3999 4.280174 GCATGATTTTGGGATGATACAGCT 59.720 41.667 0.00 0.00 0.00 4.24
2583 4000 4.280174 AGCATGATTTTGGGATGATACAGC 59.720 41.667 0.00 0.00 0.00 4.40
2584 4001 5.278808 CCAGCATGATTTTGGGATGATACAG 60.279 44.000 0.00 0.00 39.69 2.74
2585 4002 4.585581 CCAGCATGATTTTGGGATGATACA 59.414 41.667 0.00 0.00 39.69 2.29
2586 4003 4.560108 GCCAGCATGATTTTGGGATGATAC 60.560 45.833 0.00 0.00 39.69 2.24
2587 4004 3.575256 GCCAGCATGATTTTGGGATGATA 59.425 43.478 0.00 0.00 39.69 2.15
2588 4005 2.367567 GCCAGCATGATTTTGGGATGAT 59.632 45.455 0.00 0.00 39.69 2.45
2589 4006 1.758280 GCCAGCATGATTTTGGGATGA 59.242 47.619 0.00 0.00 39.69 2.92
2590 4007 1.483004 TGCCAGCATGATTTTGGGATG 59.517 47.619 0.00 0.00 39.69 3.51
2591 4008 1.483415 GTGCCAGCATGATTTTGGGAT 59.517 47.619 0.00 0.00 39.69 3.85
2592 4009 0.896923 GTGCCAGCATGATTTTGGGA 59.103 50.000 0.00 0.00 39.69 4.37
2593 4010 0.609151 TGTGCCAGCATGATTTTGGG 59.391 50.000 0.00 0.00 39.69 4.12
2594 4011 1.001068 TGTGTGCCAGCATGATTTTGG 59.999 47.619 0.00 0.00 39.69 3.28
2595 4012 2.063266 GTGTGTGCCAGCATGATTTTG 58.937 47.619 0.00 0.00 39.69 2.44
2596 4013 1.687660 TGTGTGTGCCAGCATGATTTT 59.312 42.857 0.00 0.00 39.69 1.82
2597 4014 1.271379 CTGTGTGTGCCAGCATGATTT 59.729 47.619 0.00 0.00 39.69 2.17
2598 4015 0.885879 CTGTGTGTGCCAGCATGATT 59.114 50.000 0.00 0.00 39.69 2.57
2599 4016 0.251033 ACTGTGTGTGCCAGCATGAT 60.251 50.000 0.00 0.00 39.69 2.45
2600 4017 0.396060 TACTGTGTGTGCCAGCATGA 59.604 50.000 0.00 0.00 39.69 3.07
2601 4018 0.518636 GTACTGTGTGTGCCAGCATG 59.481 55.000 0.00 0.00 33.09 4.06
2602 4019 0.108396 TGTACTGTGTGTGCCAGCAT 59.892 50.000 0.00 0.00 33.09 3.79
2603 4020 0.108396 ATGTACTGTGTGTGCCAGCA 59.892 50.000 0.00 0.00 33.09 4.41
2604 4021 1.069022 CAATGTACTGTGTGTGCCAGC 60.069 52.381 0.00 0.00 33.09 4.85
2605 4022 2.493035 TCAATGTACTGTGTGTGCCAG 58.507 47.619 0.00 0.00 36.01 4.85
2606 4023 2.629336 TCAATGTACTGTGTGTGCCA 57.371 45.000 0.00 0.00 0.00 4.92
2607 4024 2.414559 GCATCAATGTACTGTGTGTGCC 60.415 50.000 0.00 0.00 0.00 5.01
2608 4025 2.226200 TGCATCAATGTACTGTGTGTGC 59.774 45.455 15.29 15.29 0.00 4.57
2609 4026 4.486574 TTGCATCAATGTACTGTGTGTG 57.513 40.909 0.00 0.00 0.00 3.82
2610 4027 4.821260 TCTTTGCATCAATGTACTGTGTGT 59.179 37.500 0.00 0.00 0.00 3.72
2611 4028 5.361135 TCTTTGCATCAATGTACTGTGTG 57.639 39.130 0.00 0.00 0.00 3.82
2612 4029 6.207221 TGAATCTTTGCATCAATGTACTGTGT 59.793 34.615 0.00 0.00 0.00 3.72
2613 4030 6.614160 TGAATCTTTGCATCAATGTACTGTG 58.386 36.000 0.00 0.00 0.00 3.66
2614 4031 6.822667 TGAATCTTTGCATCAATGTACTGT 57.177 33.333 0.00 0.00 0.00 3.55
2615 4032 7.811236 ACTTTGAATCTTTGCATCAATGTACTG 59.189 33.333 13.73 0.00 38.73 2.74
2616 4033 7.889469 ACTTTGAATCTTTGCATCAATGTACT 58.111 30.769 13.73 0.00 38.73 2.73
2617 4034 8.524870 AACTTTGAATCTTTGCATCAATGTAC 57.475 30.769 15.02 0.00 39.24 2.90
2618 4035 8.358895 TGAACTTTGAATCTTTGCATCAATGTA 58.641 29.630 15.02 3.14 39.24 2.29
2619 4036 7.211573 TGAACTTTGAATCTTTGCATCAATGT 58.788 30.769 10.91 10.91 40.81 2.71
2620 4037 7.646446 TGAACTTTGAATCTTTGCATCAATG 57.354 32.000 9.93 9.93 33.45 2.82
2621 4038 8.842358 ATTGAACTTTGAATCTTTGCATCAAT 57.158 26.923 0.76 0.00 33.45 2.57
2622 4039 7.927092 TGATTGAACTTTGAATCTTTGCATCAA 59.073 29.630 3.34 0.00 32.90 2.57
2623 4040 7.383029 GTGATTGAACTTTGAATCTTTGCATCA 59.617 33.333 3.34 0.00 32.90 3.07
2624 4041 7.383029 TGTGATTGAACTTTGAATCTTTGCATC 59.617 33.333 3.34 0.00 32.90 3.91
2625 4042 7.170320 GTGTGATTGAACTTTGAATCTTTGCAT 59.830 33.333 3.34 0.00 32.90 3.96
2626 4043 6.476380 GTGTGATTGAACTTTGAATCTTTGCA 59.524 34.615 3.34 0.00 32.90 4.08
2627 4044 6.074142 GGTGTGATTGAACTTTGAATCTTTGC 60.074 38.462 3.34 0.00 32.90 3.68
2628 4045 7.168637 CAGGTGTGATTGAACTTTGAATCTTTG 59.831 37.037 3.34 0.00 32.90 2.77
2629 4046 7.068593 TCAGGTGTGATTGAACTTTGAATCTTT 59.931 33.333 3.34 0.00 32.90 2.52
2630 4047 6.547141 TCAGGTGTGATTGAACTTTGAATCTT 59.453 34.615 3.34 0.00 32.90 2.40
2631 4048 6.064060 TCAGGTGTGATTGAACTTTGAATCT 58.936 36.000 3.34 0.00 32.90 2.40
2632 4049 6.317789 TCAGGTGTGATTGAACTTTGAATC 57.682 37.500 0.00 0.00 32.42 2.52
2633 4050 6.713762 TTCAGGTGTGATTGAACTTTGAAT 57.286 33.333 0.00 0.00 30.85 2.57
2634 4051 6.713762 ATTCAGGTGTGATTGAACTTTGAA 57.286 33.333 0.00 0.00 36.26 2.69
2635 4052 6.713762 AATTCAGGTGTGATTGAACTTTGA 57.286 33.333 0.00 0.00 36.26 2.69
2636 4053 9.480053 AATAAATTCAGGTGTGATTGAACTTTG 57.520 29.630 0.00 0.00 36.26 2.77
2639 4056 9.295825 TGTAATAAATTCAGGTGTGATTGAACT 57.704 29.630 0.00 0.00 36.26 3.01
2640 4057 9.341899 GTGTAATAAATTCAGGTGTGATTGAAC 57.658 33.333 0.00 0.00 36.26 3.18
2641 4058 8.233868 CGTGTAATAAATTCAGGTGTGATTGAA 58.766 33.333 0.00 0.00 37.68 2.69
2642 4059 7.604545 TCGTGTAATAAATTCAGGTGTGATTGA 59.395 33.333 0.00 0.00 30.85 2.57
2643 4060 7.747888 TCGTGTAATAAATTCAGGTGTGATTG 58.252 34.615 0.00 0.00 30.85 2.67
2644 4061 7.915293 TCGTGTAATAAATTCAGGTGTGATT 57.085 32.000 0.00 0.00 30.85 2.57
2645 4062 8.506168 AATCGTGTAATAAATTCAGGTGTGAT 57.494 30.769 0.00 0.00 30.85 3.06
2646 4063 7.822334 AGAATCGTGTAATAAATTCAGGTGTGA 59.178 33.333 0.00 0.00 31.90 3.58
2647 4064 7.974675 AGAATCGTGTAATAAATTCAGGTGTG 58.025 34.615 0.00 0.00 31.90 3.82
2648 4065 7.822334 TGAGAATCGTGTAATAAATTCAGGTGT 59.178 33.333 0.00 0.00 38.61 4.16
2649 4066 8.196802 TGAGAATCGTGTAATAAATTCAGGTG 57.803 34.615 0.00 0.00 38.61 4.00
2650 4067 8.786826 TTGAGAATCGTGTAATAAATTCAGGT 57.213 30.769 0.00 0.00 38.61 4.00
2685 4102 9.438228 TCGGCCGAATTTATTATGATGTAATAA 57.562 29.630 28.99 0.00 0.00 1.40
2686 4103 9.438228 TTCGGCCGAATTTATTATGATGTAATA 57.562 29.630 35.81 7.65 0.00 0.98
2687 4104 7.915293 TCGGCCGAATTTATTATGATGTAAT 57.085 32.000 28.99 0.00 0.00 1.89
2688 4105 7.094975 CCTTCGGCCGAATTTATTATGATGTAA 60.095 37.037 38.60 12.43 33.28 2.41
2689 4106 6.370442 CCTTCGGCCGAATTTATTATGATGTA 59.630 38.462 38.60 12.83 33.28 2.29
2690 4107 5.181245 CCTTCGGCCGAATTTATTATGATGT 59.819 40.000 38.60 0.00 33.28 3.06
2691 4108 5.631026 CCTTCGGCCGAATTTATTATGATG 58.369 41.667 38.60 22.12 33.28 3.07
2692 4109 4.156008 GCCTTCGGCCGAATTTATTATGAT 59.844 41.667 38.60 0.00 44.06 2.45
2693 4110 3.500680 GCCTTCGGCCGAATTTATTATGA 59.499 43.478 38.60 14.76 44.06 2.15
2694 4111 3.821841 GCCTTCGGCCGAATTTATTATG 58.178 45.455 38.60 24.01 44.06 1.90
2707 4124 4.985290 TTTCTCATGAATTGGCCTTCGGC 61.985 47.826 3.32 0.00 38.90 5.54
2708 4125 2.042686 TCTCATGAATTGGCCTTCGG 57.957 50.000 3.32 0.00 0.00 4.30
2709 4126 4.644103 ATTTCTCATGAATTGGCCTTCG 57.356 40.909 3.32 0.00 31.56 3.79
2710 4127 7.550712 AGTTTATTTCTCATGAATTGGCCTTC 58.449 34.615 3.32 0.02 31.56 3.46
2711 4128 7.486407 AGTTTATTTCTCATGAATTGGCCTT 57.514 32.000 3.32 0.00 31.56 4.35
2712 4129 8.593945 TTAGTTTATTTCTCATGAATTGGCCT 57.406 30.769 3.32 0.00 31.56 5.19
2713 4130 9.822185 ATTTAGTTTATTTCTCATGAATTGGCC 57.178 29.630 0.00 0.00 31.56 5.36
2722 4139 9.722056 CGCAGCTTTATTTAGTTTATTTCTCAT 57.278 29.630 0.00 0.00 0.00 2.90
2723 4140 8.181573 CCGCAGCTTTATTTAGTTTATTTCTCA 58.818 33.333 0.00 0.00 0.00 3.27
2724 4141 8.395633 TCCGCAGCTTTATTTAGTTTATTTCTC 58.604 33.333 0.00 0.00 0.00 2.87
2725 4142 8.276252 TCCGCAGCTTTATTTAGTTTATTTCT 57.724 30.769 0.00 0.00 0.00 2.52
2726 4143 8.905103 TTCCGCAGCTTTATTTAGTTTATTTC 57.095 30.769 0.00 0.00 0.00 2.17
2727 4144 9.135843 GTTTCCGCAGCTTTATTTAGTTTATTT 57.864 29.630 0.00 0.00 0.00 1.40
2728 4145 8.301002 TGTTTCCGCAGCTTTATTTAGTTTATT 58.699 29.630 0.00 0.00 0.00 1.40
2729 4146 7.822658 TGTTTCCGCAGCTTTATTTAGTTTAT 58.177 30.769 0.00 0.00 0.00 1.40
2730 4147 7.204496 TGTTTCCGCAGCTTTATTTAGTTTA 57.796 32.000 0.00 0.00 0.00 2.01
2731 4148 6.079424 TGTTTCCGCAGCTTTATTTAGTTT 57.921 33.333 0.00 0.00 0.00 2.66
2732 4149 5.699097 TGTTTCCGCAGCTTTATTTAGTT 57.301 34.783 0.00 0.00 0.00 2.24
2733 4150 5.897377 ATGTTTCCGCAGCTTTATTTAGT 57.103 34.783 0.00 0.00 0.00 2.24
2734 4151 7.126398 GTCTATGTTTCCGCAGCTTTATTTAG 58.874 38.462 0.00 0.00 0.00 1.85
2735 4152 6.237996 CGTCTATGTTTCCGCAGCTTTATTTA 60.238 38.462 0.00 0.00 0.00 1.40
2736 4153 5.447279 CGTCTATGTTTCCGCAGCTTTATTT 60.447 40.000 0.00 0.00 0.00 1.40
2737 4154 4.034048 CGTCTATGTTTCCGCAGCTTTATT 59.966 41.667 0.00 0.00 0.00 1.40
2738 4155 3.555956 CGTCTATGTTTCCGCAGCTTTAT 59.444 43.478 0.00 0.00 0.00 1.40
2739 4156 2.927477 CGTCTATGTTTCCGCAGCTTTA 59.073 45.455 0.00 0.00 0.00 1.85
2740 4157 1.732259 CGTCTATGTTTCCGCAGCTTT 59.268 47.619 0.00 0.00 0.00 3.51
2741 4158 1.067142 TCGTCTATGTTTCCGCAGCTT 60.067 47.619 0.00 0.00 0.00 3.74
2742 4159 0.530744 TCGTCTATGTTTCCGCAGCT 59.469 50.000 0.00 0.00 0.00 4.24
2743 4160 1.355971 TTCGTCTATGTTTCCGCAGC 58.644 50.000 0.00 0.00 0.00 5.25
2744 4161 3.182572 GCTATTCGTCTATGTTTCCGCAG 59.817 47.826 0.00 0.00 0.00 5.18
2745 4162 3.120792 GCTATTCGTCTATGTTTCCGCA 58.879 45.455 0.00 0.00 0.00 5.69
2746 4163 2.153247 CGCTATTCGTCTATGTTTCCGC 59.847 50.000 0.00 0.00 0.00 5.54
2747 4164 3.624900 TCGCTATTCGTCTATGTTTCCG 58.375 45.455 0.00 0.00 39.67 4.30
2748 4165 4.608951 ACTCGCTATTCGTCTATGTTTCC 58.391 43.478 0.00 0.00 39.67 3.13
2749 4166 4.676018 GGACTCGCTATTCGTCTATGTTTC 59.324 45.833 0.00 0.00 39.67 2.78
2750 4167 4.097437 TGGACTCGCTATTCGTCTATGTTT 59.903 41.667 0.00 0.00 39.67 2.83
2751 4168 3.630769 TGGACTCGCTATTCGTCTATGTT 59.369 43.478 0.00 0.00 39.67 2.71
2752 4169 3.211865 TGGACTCGCTATTCGTCTATGT 58.788 45.455 0.00 0.00 39.67 2.29
2753 4170 3.898517 TGGACTCGCTATTCGTCTATG 57.101 47.619 0.00 0.00 39.67 2.23
2754 4171 3.440872 GGATGGACTCGCTATTCGTCTAT 59.559 47.826 0.00 0.00 39.67 1.98
2755 4172 2.812591 GGATGGACTCGCTATTCGTCTA 59.187 50.000 0.00 0.00 39.67 2.59
2756 4173 1.609555 GGATGGACTCGCTATTCGTCT 59.390 52.381 0.00 0.00 39.67 4.18
2757 4174 1.663445 CGGATGGACTCGCTATTCGTC 60.663 57.143 0.00 0.00 39.67 4.20
2758 4175 0.311165 CGGATGGACTCGCTATTCGT 59.689 55.000 0.00 0.00 39.67 3.85
2759 4176 0.591659 TCGGATGGACTCGCTATTCG 59.408 55.000 0.00 0.00 37.78 3.34
2760 4177 2.053282 GTCGGATGGACTCGCTATTC 57.947 55.000 0.00 0.00 42.62 1.75
2769 4186 1.517832 CCTGTGGAGTCGGATGGAC 59.482 63.158 0.00 0.00 46.45 4.02
2770 4187 1.685765 CCCTGTGGAGTCGGATGGA 60.686 63.158 0.00 0.00 0.00 3.41
2771 4188 2.903357 CCCTGTGGAGTCGGATGG 59.097 66.667 0.00 0.00 0.00 3.51
2772 4189 2.184020 TTGCCCTGTGGAGTCGGATG 62.184 60.000 0.00 0.00 0.00 3.51
2773 4190 1.274703 ATTGCCCTGTGGAGTCGGAT 61.275 55.000 0.00 0.00 0.00 4.18
2774 4191 1.899437 GATTGCCCTGTGGAGTCGGA 61.899 60.000 0.00 0.00 0.00 4.55
2775 4192 1.450312 GATTGCCCTGTGGAGTCGG 60.450 63.158 0.00 0.00 0.00 4.79
2776 4193 1.811266 CGATTGCCCTGTGGAGTCG 60.811 63.158 0.00 0.00 0.00 4.18
2777 4194 2.109126 GCGATTGCCCTGTGGAGTC 61.109 63.158 0.00 0.00 33.98 3.36
2778 4195 2.045926 GCGATTGCCCTGTGGAGT 60.046 61.111 0.00 0.00 33.98 3.85
2794 4211 2.526120 GCTACGATCCACGCTTGGC 61.526 63.158 3.88 0.00 46.94 4.52
2795 4212 1.883084 GGCTACGATCCACGCTTGG 60.883 63.158 1.99 1.99 46.94 3.61
2796 4213 0.872021 GAGGCTACGATCCACGCTTG 60.872 60.000 0.00 0.00 46.94 4.01
2797 4214 1.320344 TGAGGCTACGATCCACGCTT 61.320 55.000 0.00 0.00 46.94 4.68
2798 4215 1.753078 TGAGGCTACGATCCACGCT 60.753 57.895 0.00 0.00 46.94 5.07
2799 4216 1.589196 GTGAGGCTACGATCCACGC 60.589 63.158 0.00 0.00 46.94 5.34
2801 4218 0.386113 GGAGTGAGGCTACGATCCAC 59.614 60.000 0.00 0.00 0.00 4.02
2802 4219 0.259065 AGGAGTGAGGCTACGATCCA 59.741 55.000 9.40 0.00 31.77 3.41
2803 4220 0.671251 CAGGAGTGAGGCTACGATCC 59.329 60.000 0.00 0.00 31.77 3.36
2804 4221 1.681538 TCAGGAGTGAGGCTACGATC 58.318 55.000 0.00 0.00 31.77 3.69
2805 4222 2.235016 GATCAGGAGTGAGGCTACGAT 58.765 52.381 0.00 0.00 35.66 3.73
2806 4223 1.681538 GATCAGGAGTGAGGCTACGA 58.318 55.000 0.00 0.00 35.66 3.43
2807 4224 0.309302 CGATCAGGAGTGAGGCTACG 59.691 60.000 0.00 0.00 35.66 3.51
2808 4225 0.671251 CCGATCAGGAGTGAGGCTAC 59.329 60.000 0.00 0.00 45.00 3.58
2809 4226 0.551396 TCCGATCAGGAGTGAGGCTA 59.449 55.000 2.65 0.00 45.98 3.93
2810 4227 1.307986 TCCGATCAGGAGTGAGGCT 59.692 57.895 2.65 0.00 45.98 4.58
2811 4228 3.941081 TCCGATCAGGAGTGAGGC 58.059 61.111 2.65 0.00 45.98 4.70
2827 4244 6.024049 CGTCTTATGTTGCAGAGGAATTTTC 58.976 40.000 0.00 0.00 0.00 2.29
2828 4245 5.473504 ACGTCTTATGTTGCAGAGGAATTTT 59.526 36.000 0.00 0.00 0.00 1.82
2829 4246 5.003804 ACGTCTTATGTTGCAGAGGAATTT 58.996 37.500 0.00 0.00 0.00 1.82
2830 4247 4.579869 ACGTCTTATGTTGCAGAGGAATT 58.420 39.130 0.00 0.00 0.00 2.17
2831 4248 4.207891 ACGTCTTATGTTGCAGAGGAAT 57.792 40.909 0.00 0.00 0.00 3.01
2832 4249 3.678056 ACGTCTTATGTTGCAGAGGAA 57.322 42.857 0.00 0.00 0.00 3.36
2833 4250 3.325870 CAACGTCTTATGTTGCAGAGGA 58.674 45.455 0.00 0.00 38.15 3.71
2834 4251 3.729526 CAACGTCTTATGTTGCAGAGG 57.270 47.619 0.00 0.00 38.15 3.69
2840 4257 2.224079 ACAGCTGCAACGTCTTATGTTG 59.776 45.455 15.27 7.48 45.40 3.33
2841 4258 2.494059 ACAGCTGCAACGTCTTATGTT 58.506 42.857 15.27 0.00 0.00 2.71
2842 4259 2.169832 ACAGCTGCAACGTCTTATGT 57.830 45.000 15.27 0.00 0.00 2.29
2843 4260 2.413239 CCAACAGCTGCAACGTCTTATG 60.413 50.000 15.27 0.00 0.00 1.90
2844 4261 1.806542 CCAACAGCTGCAACGTCTTAT 59.193 47.619 15.27 0.00 0.00 1.73
2845 4262 1.225855 CCAACAGCTGCAACGTCTTA 58.774 50.000 15.27 0.00 0.00 2.10
2846 4263 1.447317 CCCAACAGCTGCAACGTCTT 61.447 55.000 15.27 0.00 0.00 3.01
2847 4264 1.893808 CCCAACAGCTGCAACGTCT 60.894 57.895 15.27 0.00 0.00 4.18
2848 4265 2.639286 CCCAACAGCTGCAACGTC 59.361 61.111 15.27 0.00 0.00 4.34
2849 4266 2.902423 TTCCCCAACAGCTGCAACGT 62.902 55.000 15.27 0.00 0.00 3.99
2850 4267 2.192861 TTCCCCAACAGCTGCAACG 61.193 57.895 15.27 0.00 0.00 4.10
2851 4268 1.363807 GTTCCCCAACAGCTGCAAC 59.636 57.895 15.27 3.72 32.14 4.17
2852 4269 2.192861 CGTTCCCCAACAGCTGCAA 61.193 57.895 15.27 0.00 32.14 4.08
2853 4270 2.046009 TACGTTCCCCAACAGCTGCA 62.046 55.000 15.27 0.00 32.14 4.41
2854 4271 1.298859 CTACGTTCCCCAACAGCTGC 61.299 60.000 15.27 0.00 32.14 5.25
2855 4272 0.034896 ACTACGTTCCCCAACAGCTG 59.965 55.000 13.48 13.48 32.14 4.24
2856 4273 1.636148 TACTACGTTCCCCAACAGCT 58.364 50.000 0.00 0.00 32.14 4.24
2922 4339 0.900647 ACACTCTCCCCTCTCGTTGG 60.901 60.000 0.00 0.00 0.00 3.77
3070 4487 4.306767 TCGAGGGACGTCATCGAA 57.693 55.556 30.77 19.54 42.05 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.