Multiple sequence alignment - TraesCS3D01G162100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G162100 chr3D 100.000 4260 0 0 1 4260 132902421 132906680 0.000000e+00 7867.0
1 TraesCS3D01G162100 chr3D 91.054 313 24 2 3581 3889 608920921 608921233 1.830000e-113 420.0
2 TraesCS3D01G162100 chr3D 87.747 253 29 2 3192 3443 64866713 64866462 1.160000e-75 294.0
3 TraesCS3D01G162100 chr3D 88.532 218 23 2 3906 4121 608921286 608921503 3.270000e-66 263.0
4 TraesCS3D01G162100 chr3D 88.060 134 15 1 2568 2701 551595193 551595325 1.590000e-34 158.0
5 TraesCS3D01G162100 chr3D 94.898 98 5 0 3443 3540 608920824 608920921 2.050000e-33 154.0
6 TraesCS3D01G162100 chr3A 90.623 1877 120 27 1 1848 146558021 146559870 0.000000e+00 2440.0
7 TraesCS3D01G162100 chr3A 88.809 697 49 10 1866 2544 146559855 146560540 0.000000e+00 828.0
8 TraesCS3D01G162100 chr3A 95.918 392 14 2 2699 3089 146560627 146561017 6.010000e-178 634.0
9 TraesCS3D01G162100 chr3A 82.396 551 85 12 358 900 78183762 78184308 1.790000e-128 470.0
10 TraesCS3D01G162100 chr3A 93.902 246 13 1 3201 3444 32654032 32653787 1.870000e-98 370.0
11 TraesCS3D01G162100 chr3A 93.089 246 12 2 3201 3444 32733895 32733653 5.240000e-94 355.0
12 TraesCS3D01G162100 chr3A 92.308 247 16 1 3201 3444 32721770 32721524 8.770000e-92 348.0
13 TraesCS3D01G162100 chr3A 97.143 105 2 1 3092 3196 146562006 146562109 4.380000e-40 176.0
14 TraesCS3D01G162100 chr3A 82.667 150 3 13 4119 4260 146562094 146562228 1.250000e-20 111.0
15 TraesCS3D01G162100 chr3B 91.335 1558 64 30 1000 2544 189383897 189385396 0.000000e+00 2063.0
16 TraesCS3D01G162100 chr3B 88.697 522 28 13 2699 3190 189385472 189385992 3.640000e-170 608.0
17 TraesCS3D01G162100 chr3B 81.517 633 76 31 1 613 189382674 189383285 2.300000e-132 483.0
18 TraesCS3D01G162100 chr3B 80.348 575 98 15 336 904 733082091 733081526 5.090000e-114 422.0
19 TraesCS3D01G162100 chr3B 78.742 461 63 23 3691 4121 101638941 101638486 4.200000e-70 276.0
20 TraesCS3D01G162100 chr3B 88.148 135 14 1 2568 2702 153653433 153653565 4.410000e-35 159.0
21 TraesCS3D01G162100 chr3B 87.129 101 2 3 4164 4260 189387621 189387714 2.100000e-18 104.0
22 TraesCS3D01G162100 chr3B 100.000 28 0 0 32 59 464417856 464417883 8.000000e-03 52.8
23 TraesCS3D01G162100 chr5A 90.496 705 30 7 3448 4121 569155492 569156190 0.000000e+00 896.0
24 TraesCS3D01G162100 chr5A 93.570 451 21 4 3441 3889 578942948 578942504 0.000000e+00 665.0
25 TraesCS3D01G162100 chr5A 94.024 251 13 1 3196 3444 569156462 569156212 3.110000e-101 379.0
26 TraesCS3D01G162100 chr5A 94.979 239 11 1 3884 4121 578942481 578942243 1.450000e-99 374.0
27 TraesCS3D01G162100 chr5A 92.188 256 16 2 3193 3444 578941966 578942221 4.050000e-95 359.0
28 TraesCS3D01G162100 chr5A 87.179 234 29 1 3887 4119 693080753 693080520 9.080000e-67 265.0
29 TraesCS3D01G162100 chr5A 84.519 239 36 1 3884 4121 299633190 299633428 7.120000e-58 235.0
30 TraesCS3D01G162100 chr5A 88.235 136 14 1 2567 2702 590920326 590920459 1.230000e-35 161.0
31 TraesCS3D01G162100 chr5A 91.489 47 2 2 125 170 202925688 202925733 3.560000e-06 63.9
32 TraesCS3D01G162100 chr6D 93.478 414 24 2 3479 3889 97032206 97032619 2.820000e-171 612.0
33 TraesCS3D01G162100 chr6D 81.164 584 99 11 325 904 454064132 454064708 3.880000e-125 459.0
34 TraesCS3D01G162100 chr6D 95.200 250 11 1 3196 3444 97033151 97032902 1.110000e-105 394.0
35 TraesCS3D01G162100 chr6D 95.397 239 10 1 3884 4121 97032642 97032880 3.110000e-101 379.0
36 TraesCS3D01G162100 chr4A 81.076 576 95 14 335 904 575005060 575005627 8.400000e-122 448.0
37 TraesCS3D01G162100 chr4A 91.111 45 2 2 125 168 542264059 542264016 4.600000e-05 60.2
38 TraesCS3D01G162100 chr5D 81.734 542 91 8 358 897 338659704 338659169 3.020000e-121 446.0
39 TraesCS3D01G162100 chr1A 80.454 573 101 11 336 904 556086517 556085952 1.090000e-115 427.0
40 TraesCS3D01G162100 chr1A 85.477 241 32 2 3884 4121 543385073 543384833 9.150000e-62 248.0
41 TraesCS3D01G162100 chr1D 80.071 567 106 7 336 899 17050140 17049578 8.520000e-112 414.0
42 TraesCS3D01G162100 chr6B 79.210 582 106 14 328 904 114966758 114967329 1.440000e-104 390.0
43 TraesCS3D01G162100 chr6B 80.481 374 43 13 3683 4026 9434490 9434863 4.230000e-65 259.0
44 TraesCS3D01G162100 chr6B 80.481 374 43 13 3683 4026 9445546 9445919 4.230000e-65 259.0
45 TraesCS3D01G162100 chr6B 80.682 88 9 5 125 209 672804751 672804669 1.280000e-05 62.1
46 TraesCS3D01G162100 chr5B 88.000 250 29 1 3196 3444 440562793 440563042 1.160000e-75 294.0
47 TraesCS3D01G162100 chr5B 79.630 108 16 6 123 227 79144365 79144469 5.910000e-09 73.1
48 TraesCS3D01G162100 chr4D 87.149 249 27 5 3192 3437 64581127 64581373 1.170000e-70 278.0
49 TraesCS3D01G162100 chr4D 91.057 123 10 1 2582 2704 443514770 443514649 9.480000e-37 165.0
50 TraesCS3D01G162100 chr4D 87.143 140 15 2 2567 2705 54796552 54796415 5.700000e-34 156.0
51 TraesCS3D01G162100 chr4D 93.617 47 1 2 125 170 34079484 34079439 7.640000e-08 69.4
52 TraesCS3D01G162100 chr1B 86.996 223 24 4 3900 4121 631120509 631120291 3.290000e-61 246.0
53 TraesCS3D01G162100 chr1B 87.500 136 15 1 2567 2702 50990213 50990080 5.700000e-34 156.0
54 TraesCS3D01G162100 chr7B 91.597 119 10 0 2582 2700 513023969 513024087 9.480000e-37 165.0
55 TraesCS3D01G162100 chr6A 87.500 136 16 1 2570 2704 474997522 474997657 5.700000e-34 156.0
56 TraesCS3D01G162100 chr2B 95.312 64 3 0 2639 2702 748596961 748596898 7.540000e-18 102.0
57 TraesCS3D01G162100 chr2B 84.375 64 10 0 3771 3834 757473933 757473870 3.560000e-06 63.9
58 TraesCS3D01G162100 chr2D 84.615 78 12 0 103 180 304970184 304970261 1.270000e-10 78.7
59 TraesCS3D01G162100 chr2A 79.381 97 16 4 125 219 105600138 105600044 9.890000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G162100 chr3D 132902421 132906680 4259 False 7867.0 7867 100.000000 1 4260 1 chr3D.!!$F1 4259
1 TraesCS3D01G162100 chr3D 608920824 608921503 679 False 279.0 420 91.494667 3443 4121 3 chr3D.!!$F3 678
2 TraesCS3D01G162100 chr3A 146558021 146562228 4207 False 837.8 2440 91.032000 1 4260 5 chr3A.!!$F2 4259
3 TraesCS3D01G162100 chr3A 78183762 78184308 546 False 470.0 470 82.396000 358 900 1 chr3A.!!$F1 542
4 TraesCS3D01G162100 chr3B 189382674 189387714 5040 False 814.5 2063 87.169500 1 4260 4 chr3B.!!$F3 4259
5 TraesCS3D01G162100 chr3B 733081526 733082091 565 True 422.0 422 80.348000 336 904 1 chr3B.!!$R2 568
6 TraesCS3D01G162100 chr5A 569155492 569156190 698 False 896.0 896 90.496000 3448 4121 1 chr5A.!!$F3 673
7 TraesCS3D01G162100 chr5A 578942243 578942948 705 True 519.5 665 94.274500 3441 4121 2 chr5A.!!$R3 680
8 TraesCS3D01G162100 chr6D 97032206 97032880 674 False 495.5 612 94.437500 3479 4121 2 chr6D.!!$F2 642
9 TraesCS3D01G162100 chr6D 454064132 454064708 576 False 459.0 459 81.164000 325 904 1 chr6D.!!$F1 579
10 TraesCS3D01G162100 chr4A 575005060 575005627 567 False 448.0 448 81.076000 335 904 1 chr4A.!!$F1 569
11 TraesCS3D01G162100 chr5D 338659169 338659704 535 True 446.0 446 81.734000 358 897 1 chr5D.!!$R1 539
12 TraesCS3D01G162100 chr1A 556085952 556086517 565 True 427.0 427 80.454000 336 904 1 chr1A.!!$R2 568
13 TraesCS3D01G162100 chr1D 17049578 17050140 562 True 414.0 414 80.071000 336 899 1 chr1D.!!$R1 563
14 TraesCS3D01G162100 chr6B 114966758 114967329 571 False 390.0 390 79.210000 328 904 1 chr6B.!!$F3 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
550 571 1.003718 GTCGTTGTGCTAAGGCCCT 60.004 57.895 0.0 0.0 37.74 5.19 F
2136 2529 0.536260 TGCAAGGCAAAAGCTGTGTT 59.464 45.000 0.0 0.0 34.76 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2547 2975 0.037877 AAGCTCATTGTGCTGAGGCT 59.962 50.0 13.53 0.0 42.42 4.58 R
3292 4710 0.041312 GCGTGTGTTAGTGTTGGCTG 60.041 55.0 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.999051 CATACAGCGTGGTCGAAGC 59.001 57.895 0.00 0.00 39.71 3.86
34 35 1.198178 GAAGCGTTTGTGGGCGATTTA 59.802 47.619 0.00 0.00 36.84 1.40
245 251 3.429492 TGGTTCAAAATATGAGCAGCCA 58.571 40.909 0.00 0.00 40.74 4.75
254 260 6.543430 AAATATGAGCAGCCAAATAAACCA 57.457 33.333 0.00 0.00 0.00 3.67
264 270 3.192633 GCCAAATAAACCACATCGGAGTT 59.807 43.478 0.00 0.00 38.63 3.01
268 274 2.851263 AAACCACATCGGAGTTGCTA 57.149 45.000 0.00 0.00 38.63 3.49
306 312 7.180229 TCCCTCAAAGAGACTGAAATGTACATA 59.820 37.037 9.21 0.00 0.00 2.29
430 439 1.254026 TCCAAGTCTGTAGACCACCG 58.746 55.000 8.34 0.00 45.85 4.94
537 558 2.963782 AGTAGACAGTTGGGAAGTCGTT 59.036 45.455 0.00 0.00 37.36 3.85
550 571 1.003718 GTCGTTGTGCTAAGGCCCT 60.004 57.895 0.00 0.00 37.74 5.19
560 581 2.435805 TGCTAAGGCCCTCATAGAACTG 59.564 50.000 0.00 0.00 37.74 3.16
662 684 1.239296 ACGAAGACCGATCCACGTGA 61.239 55.000 19.30 3.36 41.76 4.35
698 720 1.284785 ACACCAACCGAATCCCATGAT 59.715 47.619 0.00 0.00 0.00 2.45
713 735 2.590073 CATGATATCCGCTCGAGACAC 58.410 52.381 18.75 0.00 0.00 3.67
715 737 1.604278 TGATATCCGCTCGAGACACAG 59.396 52.381 18.75 0.93 0.00 3.66
807 830 4.251760 CAGAAAGCTGTCGTCGCT 57.748 55.556 0.00 0.00 39.94 4.93
821 844 1.135546 CGTCGCTTCACATCTCTGAGT 60.136 52.381 4.32 0.00 0.00 3.41
913 941 1.600636 CACCGTGCCCAAGACACAT 60.601 57.895 0.00 0.00 37.93 3.21
914 942 1.150536 ACCGTGCCCAAGACACATT 59.849 52.632 0.00 0.00 37.93 2.71
950 986 2.029970 TCGTTTGAAGCGTTGAACTGAC 59.970 45.455 0.64 0.00 0.00 3.51
1033 1389 1.002087 GACACACCCCTGTCAAGTAGG 59.998 57.143 0.00 0.00 40.40 3.18
1034 1390 1.348064 CACACCCCTGTCAAGTAGGA 58.652 55.000 0.00 0.00 37.52 2.94
1035 1391 1.697432 CACACCCCTGTCAAGTAGGAA 59.303 52.381 0.00 0.00 37.52 3.36
1037 1393 2.781174 ACACCCCTGTCAAGTAGGAAAA 59.219 45.455 0.00 0.00 37.52 2.29
1339 1700 3.687102 CGCCCACCTCACGGTACA 61.687 66.667 0.00 0.00 43.24 2.90
1421 1782 4.250116 TGGTTTCCGATTCCAATTTGTG 57.750 40.909 0.00 0.00 0.00 3.33
1425 1786 5.465935 GTTTCCGATTCCAATTTGTGCTTA 58.534 37.500 0.00 0.00 0.00 3.09
1607 1968 1.466856 TGTGCGTACCCTACCTACTG 58.533 55.000 0.00 0.00 0.00 2.74
1619 1980 3.880490 CCTACCTACTGTACTCTCTGCTG 59.120 52.174 0.00 0.00 0.00 4.41
1725 2094 3.242706 CGTTGTGTTGCTTGATCAGTTGA 60.243 43.478 0.00 0.00 0.00 3.18
1730 2099 4.919754 GTGTTGCTTGATCAGTTGAAATCC 59.080 41.667 0.00 0.00 0.00 3.01
1738 2107 7.522073 GCTTGATCAGTTGAAATCCTTGTGTTA 60.522 37.037 0.00 0.00 0.00 2.41
1739 2108 7.202016 TGATCAGTTGAAATCCTTGTGTTAC 57.798 36.000 0.00 0.00 0.00 2.50
1767 2136 2.269241 GCTGGGTAGCCACACTCC 59.731 66.667 10.27 0.00 44.33 3.85
1770 2139 1.918293 TGGGTAGCCACACTCCCAG 60.918 63.158 10.27 0.00 39.45 4.45
1772 2141 2.670148 GGTAGCCACACTCCCAGGG 61.670 68.421 0.00 0.00 0.00 4.45
1926 2303 9.498176 GTAAAGGACTAGAAAACACTTGGATTA 57.502 33.333 0.00 0.00 0.00 1.75
2052 2443 4.565564 CACAAGTATAGTGCCTCGGTTTAC 59.434 45.833 0.00 0.00 0.00 2.01
2053 2444 4.465305 ACAAGTATAGTGCCTCGGTTTACT 59.535 41.667 0.00 0.00 0.00 2.24
2054 2445 5.653769 ACAAGTATAGTGCCTCGGTTTACTA 59.346 40.000 0.00 0.00 0.00 1.82
2055 2446 6.323225 ACAAGTATAGTGCCTCGGTTTACTAT 59.677 38.462 0.00 0.00 39.13 2.12
2056 2447 7.503566 ACAAGTATAGTGCCTCGGTTTACTATA 59.496 37.037 0.00 0.00 37.49 1.31
2066 2459 7.668469 TGCCTCGGTTTACTATATGAGAATCTA 59.332 37.037 0.00 0.00 34.92 1.98
2090 2483 3.450578 GCATATGCCACATGAAACAAGG 58.549 45.455 17.26 0.00 34.31 3.61
2136 2529 0.536260 TGCAAGGCAAAAGCTGTGTT 59.464 45.000 0.00 0.00 34.76 3.32
2197 2590 5.044846 AGTGGCTTGGTTTATATGAGAACCT 60.045 40.000 14.63 0.00 44.44 3.50
2206 2599 6.465084 GTTTATATGAGAACCTAGGGCGAAT 58.535 40.000 14.81 6.66 0.00 3.34
2228 2621 7.696453 CGAATACCACGCAAAATAAGAAAGAAT 59.304 33.333 0.00 0.00 0.00 2.40
2445 2845 4.870426 GCTGATTATTCCTTCTGAACGTGA 59.130 41.667 0.00 0.00 35.31 4.35
2507 2907 5.368989 ACTCTTCAACCATTTCTTCTTCGT 58.631 37.500 0.00 0.00 0.00 3.85
2508 2908 5.467063 ACTCTTCAACCATTTCTTCTTCGTC 59.533 40.000 0.00 0.00 0.00 4.20
2547 2975 0.033781 GCCAAGGCTGCACATTTTCA 59.966 50.000 3.29 0.00 38.26 2.69
2559 2987 2.034939 CACATTTTCAGCCTCAGCACAA 59.965 45.455 0.00 0.00 43.56 3.33
2571 2999 3.128242 CCTCAGCACAATGAGCTTTAAGG 59.872 47.826 1.62 6.76 44.47 2.69
2572 3000 2.489329 TCAGCACAATGAGCTTTAAGGC 59.511 45.455 1.62 0.39 41.14 4.35
2574 3002 1.134995 GCACAATGAGCTTTAAGGCCC 60.135 52.381 5.87 0.00 0.00 5.80
2575 3003 2.450476 CACAATGAGCTTTAAGGCCCT 58.550 47.619 5.87 0.00 0.00 5.19
2583 3011 4.141620 TGAGCTTTAAGGCCCTATTCTGAG 60.142 45.833 5.87 0.00 0.00 3.35
2584 3012 3.783082 AGCTTTAAGGCCCTATTCTGAGT 59.217 43.478 5.87 0.00 0.00 3.41
2585 3013 4.130857 GCTTTAAGGCCCTATTCTGAGTC 58.869 47.826 0.00 0.00 0.00 3.36
2586 3014 4.384208 GCTTTAAGGCCCTATTCTGAGTCA 60.384 45.833 0.00 0.00 0.00 3.41
2587 3015 4.755266 TTAAGGCCCTATTCTGAGTCAC 57.245 45.455 0.00 0.00 0.00 3.67
2588 3016 2.559381 AGGCCCTATTCTGAGTCACT 57.441 50.000 0.00 0.00 0.00 3.41
2590 3018 2.023501 AGGCCCTATTCTGAGTCACTCT 60.024 50.000 6.33 0.00 0.00 3.24
2591 3019 3.205507 AGGCCCTATTCTGAGTCACTCTA 59.794 47.826 6.33 0.00 0.00 2.43
2592 3020 3.572255 GGCCCTATTCTGAGTCACTCTAG 59.428 52.174 6.33 2.27 0.00 2.43
2593 3021 3.005367 GCCCTATTCTGAGTCACTCTAGC 59.995 52.174 6.33 0.00 0.00 3.42
2594 3022 4.469657 CCCTATTCTGAGTCACTCTAGCT 58.530 47.826 6.33 0.00 0.00 3.32
2595 3023 4.892934 CCCTATTCTGAGTCACTCTAGCTT 59.107 45.833 6.33 0.00 0.00 3.74
2596 3024 5.009610 CCCTATTCTGAGTCACTCTAGCTTC 59.990 48.000 6.33 0.00 0.00 3.86
2597 3025 5.827797 CCTATTCTGAGTCACTCTAGCTTCT 59.172 44.000 6.33 0.00 0.00 2.85
2599 3027 7.500892 CCTATTCTGAGTCACTCTAGCTTCTAA 59.499 40.741 6.33 0.00 0.00 2.10
2600 3028 7.710676 ATTCTGAGTCACTCTAGCTTCTAAA 57.289 36.000 6.33 0.00 0.00 1.85
2602 3030 7.526142 TCTGAGTCACTCTAGCTTCTAAAAA 57.474 36.000 6.33 0.00 0.00 1.94
2603 3031 8.128322 TCTGAGTCACTCTAGCTTCTAAAAAT 57.872 34.615 6.33 0.00 0.00 1.82
2604 3032 9.244292 TCTGAGTCACTCTAGCTTCTAAAAATA 57.756 33.333 6.33 0.00 0.00 1.40
2605 3033 9.296400 CTGAGTCACTCTAGCTTCTAAAAATAC 57.704 37.037 6.33 0.00 0.00 1.89
2606 3034 7.968956 TGAGTCACTCTAGCTTCTAAAAATACG 59.031 37.037 6.33 0.00 0.00 3.06
2607 3035 8.053026 AGTCACTCTAGCTTCTAAAAATACGA 57.947 34.615 0.00 0.00 0.00 3.43
2608 3036 8.185505 AGTCACTCTAGCTTCTAAAAATACGAG 58.814 37.037 0.00 0.00 0.00 4.18
2609 3037 7.432838 GTCACTCTAGCTTCTAAAAATACGAGG 59.567 40.741 0.00 0.00 0.00 4.63
2610 3038 7.338703 TCACTCTAGCTTCTAAAAATACGAGGA 59.661 37.037 0.00 0.00 0.00 3.71
2611 3039 7.646130 CACTCTAGCTTCTAAAAATACGAGGAG 59.354 40.741 0.00 0.00 0.00 3.69
2612 3040 6.505272 TCTAGCTTCTAAAAATACGAGGAGC 58.495 40.000 0.00 0.00 41.45 4.70
2613 3041 5.346181 AGCTTCTAAAAATACGAGGAGCT 57.654 39.130 0.00 0.00 45.57 4.09
2614 3042 5.396750 GCTTCTAAAAATACGAGGAGCTG 57.603 43.478 0.00 0.00 38.58 4.24
2615 3043 4.260415 GCTTCTAAAAATACGAGGAGCTGC 60.260 45.833 0.00 0.00 38.58 5.25
2616 3044 3.444916 TCTAAAAATACGAGGAGCTGCG 58.555 45.455 0.00 0.00 0.00 5.18
2617 3045 1.369625 AAAAATACGAGGAGCTGCGG 58.630 50.000 0.00 0.00 0.00 5.69
2618 3046 0.535335 AAAATACGAGGAGCTGCGGA 59.465 50.000 0.00 0.00 0.00 5.54
2619 3047 0.103208 AAATACGAGGAGCTGCGGAG 59.897 55.000 0.00 0.00 0.00 4.63
2634 3062 2.813779 CGGAGCATGTGTTTTCTAGC 57.186 50.000 0.00 0.00 0.00 3.42
2635 3063 2.350522 CGGAGCATGTGTTTTCTAGCT 58.649 47.619 0.00 0.00 34.61 3.32
2636 3064 2.349886 CGGAGCATGTGTTTTCTAGCTC 59.650 50.000 0.00 0.00 45.65 4.09
2637 3065 3.604582 GGAGCATGTGTTTTCTAGCTCT 58.395 45.455 11.40 0.00 45.66 4.09
2638 3066 3.373439 GGAGCATGTGTTTTCTAGCTCTG 59.627 47.826 11.40 0.00 45.66 3.35
2639 3067 3.999663 GAGCATGTGTTTTCTAGCTCTGT 59.000 43.478 0.00 0.00 43.68 3.41
2640 3068 3.750130 AGCATGTGTTTTCTAGCTCTGTG 59.250 43.478 0.00 0.00 0.00 3.66
2641 3069 3.669023 GCATGTGTTTTCTAGCTCTGTGC 60.669 47.826 0.00 0.00 43.29 4.57
2654 3082 4.152607 GCTCTGTGCTTTTTAACTCCAG 57.847 45.455 0.00 0.00 38.95 3.86
2655 3083 3.610349 GCTCTGTGCTTTTTAACTCCAGC 60.610 47.826 0.00 0.00 38.95 4.85
2656 3084 3.817647 CTCTGTGCTTTTTAACTCCAGCT 59.182 43.478 0.00 0.00 33.15 4.24
2657 3085 4.207165 TCTGTGCTTTTTAACTCCAGCTT 58.793 39.130 0.00 0.00 33.15 3.74
2658 3086 4.275936 TCTGTGCTTTTTAACTCCAGCTTC 59.724 41.667 0.00 0.00 33.15 3.86
2659 3087 3.003275 TGTGCTTTTTAACTCCAGCTTCG 59.997 43.478 0.00 0.00 33.15 3.79
2660 3088 2.552315 TGCTTTTTAACTCCAGCTTCGG 59.448 45.455 0.00 0.00 33.15 4.30
2661 3089 2.095212 GCTTTTTAACTCCAGCTTCGGG 60.095 50.000 0.00 0.00 0.00 5.14
2662 3090 3.408634 CTTTTTAACTCCAGCTTCGGGA 58.591 45.455 0.00 0.00 0.00 5.14
2671 3099 2.413765 GCTTCGGGAGCGGAGTAG 59.586 66.667 0.00 0.00 42.46 2.57
2672 3100 2.416432 GCTTCGGGAGCGGAGTAGT 61.416 63.158 0.00 0.00 42.46 2.73
2673 3101 1.433879 CTTCGGGAGCGGAGTAGTG 59.566 63.158 0.00 0.00 0.00 2.74
2674 3102 2.005960 CTTCGGGAGCGGAGTAGTGG 62.006 65.000 0.00 0.00 0.00 4.00
2675 3103 2.439701 CGGGAGCGGAGTAGTGGA 60.440 66.667 0.00 0.00 0.00 4.02
2676 3104 2.482333 CGGGAGCGGAGTAGTGGAG 61.482 68.421 0.00 0.00 0.00 3.86
2677 3105 1.380112 GGGAGCGGAGTAGTGGAGT 60.380 63.158 0.00 0.00 0.00 3.85
2678 3106 1.668101 GGGAGCGGAGTAGTGGAGTG 61.668 65.000 0.00 0.00 0.00 3.51
2679 3107 1.668101 GGAGCGGAGTAGTGGAGTGG 61.668 65.000 0.00 0.00 0.00 4.00
2680 3108 2.184579 GCGGAGTAGTGGAGTGGC 59.815 66.667 0.00 0.00 0.00 5.01
2681 3109 2.490217 CGGAGTAGTGGAGTGGCG 59.510 66.667 0.00 0.00 0.00 5.69
2682 3110 2.893398 GGAGTAGTGGAGTGGCGG 59.107 66.667 0.00 0.00 0.00 6.13
2683 3111 2.722201 GGAGTAGTGGAGTGGCGGG 61.722 68.421 0.00 0.00 0.00 6.13
2684 3112 1.982938 GAGTAGTGGAGTGGCGGGT 60.983 63.158 0.00 0.00 0.00 5.28
2685 3113 1.946475 GAGTAGTGGAGTGGCGGGTC 61.946 65.000 0.00 0.00 0.00 4.46
2686 3114 1.982938 GTAGTGGAGTGGCGGGTCT 60.983 63.158 0.00 0.00 0.00 3.85
2687 3115 1.681327 TAGTGGAGTGGCGGGTCTC 60.681 63.158 0.00 0.00 0.00 3.36
2717 3145 4.505039 GGGTCTAATTTCCGGTCAGCATAT 60.505 45.833 0.00 0.00 0.00 1.78
2754 3185 6.593072 GCTTTCCATTTTATTGCACAGTTTC 58.407 36.000 0.00 0.00 0.00 2.78
2823 3255 1.075542 CATCCTCGCGTGCAAGTTTA 58.924 50.000 5.77 0.00 0.00 2.01
2893 3325 1.153349 GAAGTGGAGATGGACGGGC 60.153 63.158 0.00 0.00 0.00 6.13
3169 4587 4.058817 GTCGGTTGACTTGAGTTTCAGAT 58.941 43.478 0.00 0.00 42.08 2.90
3190 4608 6.980397 CAGATATATGCCTACATCGTGCATTA 59.020 38.462 1.19 0.00 42.79 1.90
3193 4611 4.754372 ATGCCTACATCGTGCATTATTG 57.246 40.909 0.00 0.00 42.79 1.90
3194 4612 4.154015 TATGCCTACATCGTGCATTATTGC 59.846 41.667 1.19 2.60 42.79 3.56
3209 4627 7.412137 GCATTATTGCTTTTTGACAAAGAGT 57.588 32.000 17.12 3.60 45.77 3.24
3212 4630 9.462174 CATTATTGCTTTTTGACAAAGAGTGTA 57.538 29.630 17.12 7.53 41.96 2.90
3215 4633 8.947055 ATTGCTTTTTGACAAAGAGTGTATTT 57.053 26.923 17.12 0.00 41.96 1.40
3217 4635 9.862371 TTGCTTTTTGACAAAGAGTGTATTTTA 57.138 25.926 17.12 0.00 41.96 1.52
3222 4640 8.810652 TTTGACAAAGAGTGTATTTTATTGGC 57.189 30.769 0.00 0.00 41.96 4.52
3224 4642 7.816640 TGACAAAGAGTGTATTTTATTGGCTC 58.183 34.615 0.00 0.00 41.96 4.70
3225 4643 7.446931 TGACAAAGAGTGTATTTTATTGGCTCA 59.553 33.333 0.00 0.00 41.96 4.26
3226 4644 8.177119 ACAAAGAGTGTATTTTATTGGCTCAA 57.823 30.769 0.00 0.00 39.29 3.02
3227 4645 8.637986 ACAAAGAGTGTATTTTATTGGCTCAAA 58.362 29.630 0.00 0.00 39.29 2.69
3228 4646 9.474920 CAAAGAGTGTATTTTATTGGCTCAAAA 57.525 29.630 0.00 0.00 0.00 2.44
3230 4648 9.643693 AAGAGTGTATTTTATTGGCTCAAAATG 57.356 29.630 11.77 0.00 35.64 2.32
3233 4651 8.253113 AGTGTATTTTATTGGCTCAAAATGAGG 58.747 33.333 9.25 0.00 44.43 3.86
3242 4660 4.030134 GCTCAAAATGAGGCATCAAGAG 57.970 45.455 4.62 11.53 44.43 2.85
3244 4662 4.267536 CTCAAAATGAGGCATCAAGAGGA 58.732 43.478 4.62 0.52 40.71 3.71
3245 4663 4.863548 TCAAAATGAGGCATCAAGAGGAT 58.136 39.130 4.62 0.00 39.39 3.24
3246 4664 6.005066 TCAAAATGAGGCATCAAGAGGATA 57.995 37.500 4.62 0.00 39.39 2.59
3247 4665 5.824624 TCAAAATGAGGCATCAAGAGGATAC 59.175 40.000 4.62 0.00 39.39 2.24
3249 4667 3.827008 TGAGGCATCAAGAGGATACAC 57.173 47.619 0.00 0.00 33.95 2.90
3250 4668 3.106827 TGAGGCATCAAGAGGATACACA 58.893 45.455 0.00 0.00 33.95 3.72
3251 4669 3.118629 TGAGGCATCAAGAGGATACACAC 60.119 47.826 0.00 0.00 33.95 3.82
3253 4671 3.457380 AGGCATCAAGAGGATACACACAT 59.543 43.478 0.00 0.00 41.41 3.21
3254 4672 4.655649 AGGCATCAAGAGGATACACACATA 59.344 41.667 0.00 0.00 41.41 2.29
3255 4673 5.130975 AGGCATCAAGAGGATACACACATAA 59.869 40.000 0.00 0.00 41.41 1.90
3256 4674 6.000219 GGCATCAAGAGGATACACACATAAT 59.000 40.000 0.00 0.00 41.41 1.28
3261 4679 5.876651 AGAGGATACACACATAATGAGCA 57.123 39.130 0.00 0.00 41.41 4.26
3262 4680 5.605534 AGAGGATACACACATAATGAGCAC 58.394 41.667 0.00 0.00 41.41 4.40
3264 4682 5.118990 AGGATACACACATAATGAGCACAC 58.881 41.667 0.00 0.00 41.41 3.82
3266 4684 2.436417 ACACACATAATGAGCACACCC 58.564 47.619 0.00 0.00 0.00 4.61
3267 4685 1.398041 CACACATAATGAGCACACCCG 59.602 52.381 0.00 0.00 0.00 5.28
3268 4686 1.016627 CACATAATGAGCACACCCGG 58.983 55.000 0.00 0.00 0.00 5.73
3270 4688 1.152963 ATAATGAGCACACCCGGCC 60.153 57.895 0.00 0.00 0.00 6.13
3274 4692 4.767255 GAGCACACCCGGCCTCTG 62.767 72.222 0.00 0.00 0.00 3.35
3277 4695 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
3279 4697 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
3281 4699 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
3282 4700 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
3283 4701 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
3284 4702 1.291588 CGGCCTCTGCATAGCTAGG 59.708 63.158 0.00 0.00 40.13 3.02
3285 4703 1.181741 CGGCCTCTGCATAGCTAGGA 61.182 60.000 10.11 0.00 40.13 2.94
3295 4713 2.141517 CATAGCTAGGATGCACACAGC 58.858 52.381 0.00 0.00 45.96 4.40
3301 4719 4.950744 GATGCACACAGCCAACAC 57.049 55.556 0.00 0.00 44.83 3.32
3302 4720 2.334307 GATGCACACAGCCAACACT 58.666 52.632 0.00 0.00 44.83 3.55
3303 4721 1.522668 GATGCACACAGCCAACACTA 58.477 50.000 0.00 0.00 44.83 2.74
3304 4722 1.879380 GATGCACACAGCCAACACTAA 59.121 47.619 0.00 0.00 44.83 2.24
3307 4725 1.268539 GCACACAGCCAACACTAACAC 60.269 52.381 0.00 0.00 37.23 3.32
3308 4726 2.013400 CACACAGCCAACACTAACACA 58.987 47.619 0.00 0.00 0.00 3.72
3309 4727 2.014128 ACACAGCCAACACTAACACAC 58.986 47.619 0.00 0.00 0.00 3.82
3311 4729 0.041312 CAGCCAACACTAACACACGC 60.041 55.000 0.00 0.00 0.00 5.34
3312 4730 0.462937 AGCCAACACTAACACACGCA 60.463 50.000 0.00 0.00 0.00 5.24
3313 4731 0.316689 GCCAACACTAACACACGCAC 60.317 55.000 0.00 0.00 0.00 5.34
3315 4733 1.267832 CCAACACTAACACACGCACAC 60.268 52.381 0.00 0.00 0.00 3.82
3319 4842 1.395262 CACTAACACACGCACACAACA 59.605 47.619 0.00 0.00 0.00 3.33
3322 4845 0.593618 AACACACGCACACAACAACA 59.406 45.000 0.00 0.00 0.00 3.33
3324 4847 1.125274 CACACGCACACAACAACACG 61.125 55.000 0.00 0.00 0.00 4.49
3329 4852 1.255767 GCACACAACAACACGTCAAC 58.744 50.000 0.00 0.00 0.00 3.18
3335 4858 5.226978 CACACAACAACACGTCAACAAATAG 59.773 40.000 0.00 0.00 0.00 1.73
3337 4860 4.142578 ACAACAACACGTCAACAAATAGCA 60.143 37.500 0.00 0.00 0.00 3.49
3338 4861 4.624336 ACAACACGTCAACAAATAGCAA 57.376 36.364 0.00 0.00 0.00 3.91
3340 4863 5.034152 ACAACACGTCAACAAATAGCAAAG 58.966 37.500 0.00 0.00 0.00 2.77
3342 4865 4.844267 ACACGTCAACAAATAGCAAAGTC 58.156 39.130 0.00 0.00 0.00 3.01
3343 4866 4.334203 ACACGTCAACAAATAGCAAAGTCA 59.666 37.500 0.00 0.00 0.00 3.41
3345 4868 6.203915 ACACGTCAACAAATAGCAAAGTCATA 59.796 34.615 0.00 0.00 0.00 2.15
3346 4869 7.094805 ACACGTCAACAAATAGCAAAGTCATAT 60.095 33.333 0.00 0.00 0.00 1.78
3347 4870 8.387354 CACGTCAACAAATAGCAAAGTCATATA 58.613 33.333 0.00 0.00 0.00 0.86
3348 4871 8.941977 ACGTCAACAAATAGCAAAGTCATATAA 58.058 29.630 0.00 0.00 0.00 0.98
3349 4872 9.425893 CGTCAACAAATAGCAAAGTCATATAAG 57.574 33.333 0.00 0.00 0.00 1.73
3352 4875 9.722056 CAACAAATAGCAAAGTCATATAAGACC 57.278 33.333 4.52 0.00 39.34 3.85
3357 4880 6.442513 AGCAAAGTCATATAAGACCAAAGC 57.557 37.500 4.52 4.82 39.34 3.51
3359 4882 5.730568 GCAAAGTCATATAAGACCAAAGCCG 60.731 44.000 4.52 0.00 39.34 5.52
3360 4883 4.755266 AGTCATATAAGACCAAAGCCGT 57.245 40.909 4.52 0.00 39.34 5.68
3361 4884 4.442706 AGTCATATAAGACCAAAGCCGTG 58.557 43.478 4.52 0.00 39.34 4.94
3362 4885 3.002348 GTCATATAAGACCAAAGCCGTGC 59.998 47.826 0.00 0.00 32.36 5.34
3364 4887 0.321298 ATAAGACCAAAGCCGTGCGT 60.321 50.000 0.00 0.00 0.00 5.24
3365 4888 0.317799 TAAGACCAAAGCCGTGCGTA 59.682 50.000 0.00 0.00 0.00 4.42
3366 4889 0.949105 AAGACCAAAGCCGTGCGTAG 60.949 55.000 0.00 0.00 0.00 3.51
3368 4891 1.623973 GACCAAAGCCGTGCGTAGAC 61.624 60.000 0.00 0.00 0.00 2.59
3370 4893 1.731613 CAAAGCCGTGCGTAGACGA 60.732 57.895 6.19 0.00 42.10 4.20
3372 4895 1.076533 AAAGCCGTGCGTAGACGATG 61.077 55.000 6.19 0.00 42.10 3.84
3374 4897 1.515519 GCCGTGCGTAGACGATGAA 60.516 57.895 6.19 0.00 42.10 2.57
3375 4898 1.074319 GCCGTGCGTAGACGATGAAA 61.074 55.000 6.19 0.00 42.10 2.69
3376 4899 1.342555 CCGTGCGTAGACGATGAAAA 58.657 50.000 6.19 0.00 42.10 2.29
3377 4900 1.722464 CCGTGCGTAGACGATGAAAAA 59.278 47.619 6.19 0.00 42.10 1.94
3405 4928 7.572523 TCAGAGCAACCAAATTCATAATAGG 57.427 36.000 0.00 0.00 0.00 2.57
3406 4929 6.039717 TCAGAGCAACCAAATTCATAATAGGC 59.960 38.462 0.00 0.00 0.00 3.93
3407 4930 5.893255 AGAGCAACCAAATTCATAATAGGCA 59.107 36.000 0.00 0.00 0.00 4.75
3408 4931 6.380846 AGAGCAACCAAATTCATAATAGGCAA 59.619 34.615 0.00 0.00 0.00 4.52
3409 4932 6.945218 AGCAACCAAATTCATAATAGGCAAA 58.055 32.000 0.00 0.00 0.00 3.68
3410 4933 6.818142 AGCAACCAAATTCATAATAGGCAAAC 59.182 34.615 0.00 0.00 0.00 2.93
3411 4934 6.818142 GCAACCAAATTCATAATAGGCAAACT 59.182 34.615 0.00 0.00 0.00 2.66
3413 4936 9.301153 CAACCAAATTCATAATAGGCAAACTAC 57.699 33.333 0.00 0.00 33.70 2.73
3414 4937 8.588290 ACCAAATTCATAATAGGCAAACTACA 57.412 30.769 0.00 0.00 33.70 2.74
3415 4938 9.030452 ACCAAATTCATAATAGGCAAACTACAA 57.970 29.630 0.00 0.00 33.70 2.41
3416 4939 9.301153 CCAAATTCATAATAGGCAAACTACAAC 57.699 33.333 0.00 0.00 33.70 3.32
3417 4940 9.853555 CAAATTCATAATAGGCAAACTACAACA 57.146 29.630 0.00 0.00 33.70 3.33
3421 4944 8.800370 TCATAATAGGCAAACTACAACAATGA 57.200 30.769 0.00 0.00 33.70 2.57
3422 4945 8.673711 TCATAATAGGCAAACTACAACAATGAC 58.326 33.333 0.00 0.00 33.70 3.06
3423 4946 5.897377 ATAGGCAAACTACAACAATGACC 57.103 39.130 0.00 0.00 33.70 4.02
3424 4947 3.561143 AGGCAAACTACAACAATGACCA 58.439 40.909 0.00 0.00 0.00 4.02
3425 4948 4.151883 AGGCAAACTACAACAATGACCAT 58.848 39.130 0.00 0.00 0.00 3.55
3426 4949 5.321102 AGGCAAACTACAACAATGACCATA 58.679 37.500 0.00 0.00 0.00 2.74
3427 4950 5.951747 AGGCAAACTACAACAATGACCATAT 59.048 36.000 0.00 0.00 0.00 1.78
3428 4951 6.095440 AGGCAAACTACAACAATGACCATATC 59.905 38.462 0.00 0.00 0.00 1.63
3429 4952 6.265577 GCAAACTACAACAATGACCATATCC 58.734 40.000 0.00 0.00 0.00 2.59
3431 4954 4.127171 ACTACAACAATGACCATATCCGC 58.873 43.478 0.00 0.00 0.00 5.54
3433 4956 3.351740 ACAACAATGACCATATCCGCAA 58.648 40.909 0.00 0.00 0.00 4.85
3434 4957 3.128589 ACAACAATGACCATATCCGCAAC 59.871 43.478 0.00 0.00 0.00 4.17
3435 4958 2.997980 ACAATGACCATATCCGCAACA 58.002 42.857 0.00 0.00 0.00 3.33
3437 4960 3.953612 ACAATGACCATATCCGCAACAAT 59.046 39.130 0.00 0.00 0.00 2.71
3438 4961 4.402155 ACAATGACCATATCCGCAACAATT 59.598 37.500 0.00 0.00 0.00 2.32
3439 4962 5.592282 ACAATGACCATATCCGCAACAATTA 59.408 36.000 0.00 0.00 0.00 1.40
3445 4968 4.378356 CCATATCCGCAACAATTATGTCCG 60.378 45.833 0.00 0.00 39.40 4.79
3554 5204 3.067106 GCCAGATTCGACTTTCAAGACA 58.933 45.455 0.00 0.00 0.00 3.41
3641 5294 0.826715 ATCGTCAGTGTGGCTGCTAT 59.173 50.000 0.00 0.00 44.66 2.97
3650 5305 3.054434 AGTGTGGCTGCTATGTTTATCCA 60.054 43.478 0.00 0.00 0.00 3.41
3701 5356 0.744874 GATTGGTCATCTCGTCCCGA 59.255 55.000 0.00 0.00 0.00 5.14
3706 5361 1.677633 TCATCTCGTCCCGACAGCA 60.678 57.895 0.00 0.00 0.00 4.41
3755 5410 4.039703 CGATACATCTTCGCGAGGTTTTA 58.960 43.478 18.33 7.80 37.83 1.52
3820 5475 1.825090 AGAATGATGACTTGGCGCAA 58.175 45.000 10.83 0.00 0.00 4.85
4002 5734 1.536766 CTTGTTGAAGGCATTGCTCGA 59.463 47.619 8.82 0.00 0.00 4.04
4070 6126 6.230472 CCATAAGTGGTTGAATCCGATGATA 58.770 40.000 0.00 0.00 40.83 2.15
4198 6498 2.433239 ACGGGTACAACAAGGCTATAGG 59.567 50.000 1.04 0.00 0.00 2.57
4199 6499 2.805657 CGGGTACAACAAGGCTATAGGC 60.806 54.545 18.26 18.26 41.43 3.93
4219 6519 3.368948 GGCTATAGCTGCCTAATGGAGTC 60.369 52.174 23.53 0.00 46.38 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.198178 TCTTAAATCGCCCACAAACGC 59.802 47.619 0.00 0.00 0.00 4.84
18 19 2.482721 ACTCTTAAATCGCCCACAAACG 59.517 45.455 0.00 0.00 0.00 3.60
34 35 1.677217 GCATCTCCAAAGCGGACTCTT 60.677 52.381 0.00 0.00 39.64 2.85
245 251 4.079253 AGCAACTCCGATGTGGTTTATTT 58.921 39.130 0.00 0.00 39.52 1.40
254 260 2.166664 GAGGTTCTAGCAACTCCGATGT 59.833 50.000 0.00 0.00 0.00 3.06
264 270 3.650942 TGAGGGAAAAAGAGGTTCTAGCA 59.349 43.478 0.00 0.00 0.00 3.49
268 274 5.388599 TCTTTGAGGGAAAAAGAGGTTCT 57.611 39.130 0.00 0.00 38.43 3.01
353 362 9.911788 ACCTTAACAGTTGATGAATAGATCAAT 57.088 29.630 0.00 0.00 42.78 2.57
419 428 0.391528 TCGTCGATCGGTGGTCTACA 60.392 55.000 16.41 0.00 40.32 2.74
430 439 2.177977 CAGTGCTTGTAGTCGTCGATC 58.822 52.381 0.00 0.00 0.00 3.69
550 571 0.323302 TTGGTGCGCCAGTTCTATGA 59.677 50.000 20.15 0.00 46.91 2.15
560 581 2.105930 TTGCTGTTTTGGTGCGCC 59.894 55.556 10.11 10.11 0.00 6.53
662 684 2.761208 TGGTGTTTGTTTTCGGTGGATT 59.239 40.909 0.00 0.00 0.00 3.01
698 720 0.748367 AGCTGTGTCTCGAGCGGATA 60.748 55.000 7.81 0.00 40.34 2.59
713 735 2.031516 CAGAGGGCGTGTGAAGCTG 61.032 63.158 0.00 0.00 34.52 4.24
715 737 2.029844 GTCAGAGGGCGTGTGAAGC 61.030 63.158 8.70 0.00 28.26 3.86
807 830 4.407365 TGTGTCCTACTCAGAGATGTGAA 58.593 43.478 3.79 0.00 0.00 3.18
913 941 1.244816 ACGATCGTCTCCTGTGTCAA 58.755 50.000 16.60 0.00 0.00 3.18
914 942 1.244816 AACGATCGTCTCCTGTGTCA 58.755 50.000 22.98 0.00 0.00 3.58
1033 1389 7.317390 CAGACCTACTCCTACTCTTTCTTTTC 58.683 42.308 0.00 0.00 0.00 2.29
1034 1390 6.295405 GCAGACCTACTCCTACTCTTTCTTTT 60.295 42.308 0.00 0.00 0.00 2.27
1035 1391 5.186215 GCAGACCTACTCCTACTCTTTCTTT 59.814 44.000 0.00 0.00 0.00 2.52
1037 1393 4.274978 GCAGACCTACTCCTACTCTTTCT 58.725 47.826 0.00 0.00 0.00 2.52
1354 1715 2.336809 CGCCAGGGCTCGAGATAC 59.663 66.667 18.75 5.06 39.32 2.24
1421 1782 4.811761 CGCGCGCCCAAACTAAGC 62.812 66.667 27.72 0.00 0.00 3.09
1607 1968 1.543802 ACAGAGCACAGCAGAGAGTAC 59.456 52.381 0.00 0.00 0.00 2.73
1619 1980 0.687354 TTGGAGGAGGAACAGAGCAC 59.313 55.000 0.00 0.00 0.00 4.40
1725 2094 7.651808 CAACTGATCAAGTAACACAAGGATTT 58.348 34.615 0.00 0.00 38.56 2.17
1730 2099 5.446709 CAGCAACTGATCAAGTAACACAAG 58.553 41.667 0.00 0.00 38.56 3.16
1738 2107 3.340814 CTACCCAGCAACTGATCAAGT 57.659 47.619 0.00 0.00 42.60 3.16
1783 2153 1.142314 GTATACGCGGCCACAGGAA 59.858 57.895 12.47 0.00 0.00 3.36
1785 2155 1.591594 CAGTATACGCGGCCACAGG 60.592 63.158 12.47 0.00 0.00 4.00
1790 2160 2.206750 TGAAATTCAGTATACGCGGCC 58.793 47.619 12.47 0.00 0.00 6.13
1880 2257 9.338622 CCTTTACCAACGAAGATTATCCTATTT 57.661 33.333 0.00 0.00 0.00 1.40
1895 2272 5.756833 AGTGTTTTCTAGTCCTTTACCAACG 59.243 40.000 0.00 0.00 0.00 4.10
1926 2303 4.737855 AGTACGCATAAAGACTCCACAT 57.262 40.909 0.00 0.00 0.00 3.21
2075 2468 4.692228 TCTTTTTCCTTGTTTCATGTGGC 58.308 39.130 0.00 0.00 0.00 5.01
2158 2551 0.524862 CCACTCTGCATTCTTGTGCC 59.475 55.000 0.00 0.00 44.43 5.01
2206 2599 8.780846 TCTATTCTTTCTTATTTTGCGTGGTA 57.219 30.769 0.00 0.00 0.00 3.25
2257 2656 0.238289 CTCATGGTCGTGTTTGGTGC 59.762 55.000 0.00 0.00 0.00 5.01
2423 2823 5.006165 GCTCACGTTCAGAAGGAATAATCAG 59.994 44.000 9.87 0.00 37.93 2.90
2468 2868 7.255277 GGTTGAAGAGTTTTGCTTTGATACTCT 60.255 37.037 0.00 0.00 45.42 3.24
2507 2907 5.184340 GCGTCTCTTGCCTTATAACTAGA 57.816 43.478 0.00 0.00 0.00 2.43
2547 2975 0.037877 AAGCTCATTGTGCTGAGGCT 59.962 50.000 13.53 0.00 42.42 4.58
2559 2987 4.413520 TCAGAATAGGGCCTTAAAGCTCAT 59.586 41.667 13.45 0.00 34.85 2.90
2571 2999 3.005367 GCTAGAGTGACTCAGAATAGGGC 59.995 52.174 15.86 3.38 32.06 5.19
2572 3000 4.469657 AGCTAGAGTGACTCAGAATAGGG 58.530 47.826 15.86 0.00 32.06 3.53
2574 3002 6.942532 AGAAGCTAGAGTGACTCAGAATAG 57.057 41.667 15.86 8.61 32.06 1.73
2575 3003 8.809468 TTTAGAAGCTAGAGTGACTCAGAATA 57.191 34.615 15.86 0.00 32.06 1.75
2583 3011 7.432838 CCTCGTATTTTTAGAAGCTAGAGTGAC 59.567 40.741 0.00 0.00 0.00 3.67
2584 3012 7.338703 TCCTCGTATTTTTAGAAGCTAGAGTGA 59.661 37.037 0.00 0.00 0.00 3.41
2585 3013 7.481642 TCCTCGTATTTTTAGAAGCTAGAGTG 58.518 38.462 0.00 0.00 0.00 3.51
2586 3014 7.642082 TCCTCGTATTTTTAGAAGCTAGAGT 57.358 36.000 0.00 0.00 0.00 3.24
2587 3015 6.639279 GCTCCTCGTATTTTTAGAAGCTAGAG 59.361 42.308 0.00 0.00 0.00 2.43
2588 3016 6.321690 AGCTCCTCGTATTTTTAGAAGCTAGA 59.678 38.462 0.00 0.00 0.00 2.43
2590 3018 6.273825 CAGCTCCTCGTATTTTTAGAAGCTA 58.726 40.000 0.00 0.00 0.00 3.32
2591 3019 5.112686 CAGCTCCTCGTATTTTTAGAAGCT 58.887 41.667 0.00 0.00 0.00 3.74
2592 3020 4.260415 GCAGCTCCTCGTATTTTTAGAAGC 60.260 45.833 0.00 0.00 0.00 3.86
2593 3021 4.026475 CGCAGCTCCTCGTATTTTTAGAAG 60.026 45.833 0.00 0.00 0.00 2.85
2594 3022 3.863424 CGCAGCTCCTCGTATTTTTAGAA 59.137 43.478 0.00 0.00 0.00 2.10
2595 3023 3.444916 CGCAGCTCCTCGTATTTTTAGA 58.555 45.455 0.00 0.00 0.00 2.10
2596 3024 2.540101 CCGCAGCTCCTCGTATTTTTAG 59.460 50.000 0.00 0.00 0.00 1.85
2597 3025 2.166870 TCCGCAGCTCCTCGTATTTTTA 59.833 45.455 0.00 0.00 0.00 1.52
2599 3027 0.535335 TCCGCAGCTCCTCGTATTTT 59.465 50.000 0.00 0.00 0.00 1.82
2600 3028 0.103208 CTCCGCAGCTCCTCGTATTT 59.897 55.000 0.00 0.00 0.00 1.40
2602 3030 2.851071 GCTCCGCAGCTCCTCGTAT 61.851 63.158 0.00 0.00 43.09 3.06
2603 3031 3.518998 GCTCCGCAGCTCCTCGTA 61.519 66.667 0.00 0.00 43.09 3.43
2611 3039 0.730494 GAAAACACATGCTCCGCAGC 60.730 55.000 0.00 0.00 43.65 5.25
2612 3040 0.877071 AGAAAACACATGCTCCGCAG 59.123 50.000 0.00 0.00 43.65 5.18
2613 3041 2.076100 CTAGAAAACACATGCTCCGCA 58.924 47.619 0.00 0.00 44.86 5.69
2614 3042 1.202076 GCTAGAAAACACATGCTCCGC 60.202 52.381 0.00 0.00 0.00 5.54
2615 3043 2.349886 GAGCTAGAAAACACATGCTCCG 59.650 50.000 0.00 0.00 40.44 4.63
2616 3044 3.373439 CAGAGCTAGAAAACACATGCTCC 59.627 47.826 8.84 0.00 45.40 4.70
2617 3045 3.999663 ACAGAGCTAGAAAACACATGCTC 59.000 43.478 0.00 0.00 44.85 4.26
2618 3046 3.750130 CACAGAGCTAGAAAACACATGCT 59.250 43.478 0.00 0.00 0.00 3.79
2619 3047 3.669023 GCACAGAGCTAGAAAACACATGC 60.669 47.826 0.00 0.00 41.15 4.06
2620 3048 4.075763 GCACAGAGCTAGAAAACACATG 57.924 45.455 0.00 0.00 41.15 3.21
2633 3061 3.610349 GCTGGAGTTAAAAAGCACAGAGC 60.610 47.826 0.00 0.00 46.19 4.09
2634 3062 3.817647 AGCTGGAGTTAAAAAGCACAGAG 59.182 43.478 0.00 0.00 38.14 3.35
2635 3063 3.820557 AGCTGGAGTTAAAAAGCACAGA 58.179 40.909 0.00 0.00 38.14 3.41
2636 3064 4.540824 GAAGCTGGAGTTAAAAAGCACAG 58.459 43.478 0.00 0.00 38.14 3.66
2637 3065 3.003275 CGAAGCTGGAGTTAAAAAGCACA 59.997 43.478 0.00 0.00 38.14 4.57
2638 3066 3.555518 CGAAGCTGGAGTTAAAAAGCAC 58.444 45.455 0.00 0.00 38.14 4.40
2639 3067 2.552315 CCGAAGCTGGAGTTAAAAAGCA 59.448 45.455 0.00 0.00 38.14 3.91
2640 3068 2.095212 CCCGAAGCTGGAGTTAAAAAGC 60.095 50.000 0.00 0.00 35.86 3.51
2641 3069 3.408634 TCCCGAAGCTGGAGTTAAAAAG 58.591 45.455 0.00 0.00 0.00 2.27
2642 3070 3.408634 CTCCCGAAGCTGGAGTTAAAAA 58.591 45.455 9.89 0.00 43.68 1.94
2643 3071 3.053831 CTCCCGAAGCTGGAGTTAAAA 57.946 47.619 9.89 0.00 43.68 1.52
2644 3072 2.762535 CTCCCGAAGCTGGAGTTAAA 57.237 50.000 9.89 0.00 43.68 1.52
2655 3083 1.433879 CACTACTCCGCTCCCGAAG 59.566 63.158 0.00 0.00 36.29 3.79
2656 3084 2.050350 CCACTACTCCGCTCCCGAA 61.050 63.158 0.00 0.00 36.29 4.30
2657 3085 2.439701 CCACTACTCCGCTCCCGA 60.440 66.667 0.00 0.00 36.29 5.14
2658 3086 2.439701 TCCACTACTCCGCTCCCG 60.440 66.667 0.00 0.00 0.00 5.14
2659 3087 1.380112 ACTCCACTACTCCGCTCCC 60.380 63.158 0.00 0.00 0.00 4.30
2660 3088 1.668101 CCACTCCACTACTCCGCTCC 61.668 65.000 0.00 0.00 0.00 4.70
2661 3089 1.810532 CCACTCCACTACTCCGCTC 59.189 63.158 0.00 0.00 0.00 5.03
2662 3090 2.352032 GCCACTCCACTACTCCGCT 61.352 63.158 0.00 0.00 0.00 5.52
2663 3091 2.184579 GCCACTCCACTACTCCGC 59.815 66.667 0.00 0.00 0.00 5.54
2664 3092 2.490217 CGCCACTCCACTACTCCG 59.510 66.667 0.00 0.00 0.00 4.63
2665 3093 2.722201 CCCGCCACTCCACTACTCC 61.722 68.421 0.00 0.00 0.00 3.85
2666 3094 1.946475 GACCCGCCACTCCACTACTC 61.946 65.000 0.00 0.00 0.00 2.59
2667 3095 1.982938 GACCCGCCACTCCACTACT 60.983 63.158 0.00 0.00 0.00 2.57
2668 3096 1.946475 GAGACCCGCCACTCCACTAC 61.946 65.000 0.00 0.00 0.00 2.73
2669 3097 1.681327 GAGACCCGCCACTCCACTA 60.681 63.158 0.00 0.00 0.00 2.74
2670 3098 2.997897 GAGACCCGCCACTCCACT 60.998 66.667 0.00 0.00 0.00 4.00
2681 3109 0.324091 TAGACCCTGTTCGGAGACCC 60.324 60.000 0.00 0.00 34.32 4.46
2682 3110 1.553706 TTAGACCCTGTTCGGAGACC 58.446 55.000 0.00 0.00 34.32 3.85
2683 3111 3.889520 AATTAGACCCTGTTCGGAGAC 57.110 47.619 0.00 0.00 34.32 3.36
2684 3112 3.197116 GGAAATTAGACCCTGTTCGGAGA 59.803 47.826 0.00 0.00 33.16 3.71
2685 3113 3.532542 GGAAATTAGACCCTGTTCGGAG 58.467 50.000 0.00 0.00 33.16 4.63
2686 3114 2.093869 CGGAAATTAGACCCTGTTCGGA 60.094 50.000 0.00 0.00 33.16 4.55
2687 3115 2.277084 CGGAAATTAGACCCTGTTCGG 58.723 52.381 0.00 0.00 0.00 4.30
2688 3116 2.277084 CCGGAAATTAGACCCTGTTCG 58.723 52.381 0.00 0.00 0.00 3.95
2689 3117 3.268330 GACCGGAAATTAGACCCTGTTC 58.732 50.000 9.46 0.00 0.00 3.18
2690 3118 2.640826 TGACCGGAAATTAGACCCTGTT 59.359 45.455 9.46 0.00 0.00 3.16
2691 3119 2.236395 CTGACCGGAAATTAGACCCTGT 59.764 50.000 9.46 0.00 0.00 4.00
2692 3120 2.906354 CTGACCGGAAATTAGACCCTG 58.094 52.381 9.46 0.00 0.00 4.45
2693 3121 1.209747 GCTGACCGGAAATTAGACCCT 59.790 52.381 9.46 0.00 0.00 4.34
2694 3122 1.065709 TGCTGACCGGAAATTAGACCC 60.066 52.381 9.46 0.00 0.00 4.46
2695 3123 2.396590 TGCTGACCGGAAATTAGACC 57.603 50.000 9.46 0.00 0.00 3.85
2696 3124 4.083802 GCATATGCTGACCGGAAATTAGAC 60.084 45.833 20.64 0.00 38.21 2.59
2697 3125 4.065088 GCATATGCTGACCGGAAATTAGA 58.935 43.478 20.64 0.00 38.21 2.10
2717 3145 0.881118 GGAAAGCGTCTGAAATGGCA 59.119 50.000 0.00 0.00 0.00 4.92
2754 3185 4.982295 TCAGACAATGTGACTTACGACTTG 59.018 41.667 0.00 0.00 0.00 3.16
2823 3255 6.959639 TTTACTTCAGCCTTGTTCTTGATT 57.040 33.333 0.00 0.00 0.00 2.57
2893 3325 3.927163 CTTTCCGGTCGACCACCCG 62.927 68.421 32.80 19.41 43.31 5.28
3084 3516 5.004922 GAGGTGATCTCCACTCACTTAAG 57.995 47.826 15.93 0.00 45.03 1.85
3169 4587 7.538303 CAATAATGCACGATGTAGGCATATA 57.462 36.000 0.00 0.00 46.77 0.86
3190 4608 8.947055 AAATACACTCTTTGTCAAAAAGCAAT 57.053 26.923 0.00 0.00 39.91 3.56
3198 4616 8.177119 AGCCAATAAAATACACTCTTTGTCAA 57.823 30.769 0.00 0.00 39.91 3.18
3200 4618 7.816640 TGAGCCAATAAAATACACTCTTTGTC 58.183 34.615 0.00 0.00 39.91 3.18
3201 4619 7.759489 TGAGCCAATAAAATACACTCTTTGT 57.241 32.000 0.00 0.00 42.84 2.83
3202 4620 9.474920 TTTTGAGCCAATAAAATACACTCTTTG 57.525 29.630 0.00 0.00 0.00 2.77
3204 4622 9.643693 CATTTTGAGCCAATAAAATACACTCTT 57.356 29.630 0.00 0.00 35.40 2.85
3205 4623 9.023962 TCATTTTGAGCCAATAAAATACACTCT 57.976 29.630 0.00 0.00 35.40 3.24
3206 4624 9.294030 CTCATTTTGAGCCAATAAAATACACTC 57.706 33.333 0.00 0.00 37.72 3.51
3207 4625 8.253113 CCTCATTTTGAGCCAATAAAATACACT 58.747 33.333 0.00 0.00 42.98 3.55
3209 4627 7.041107 GCCTCATTTTGAGCCAATAAAATACA 58.959 34.615 0.00 0.00 42.98 2.29
3212 4630 6.052405 TGCCTCATTTTGAGCCAATAAAAT 57.948 33.333 0.00 0.00 42.98 1.82
3213 4631 5.480642 TGCCTCATTTTGAGCCAATAAAA 57.519 34.783 0.00 0.00 42.98 1.52
3214 4632 5.187381 TGATGCCTCATTTTGAGCCAATAAA 59.813 36.000 0.00 0.00 42.98 1.40
3215 4633 4.710865 TGATGCCTCATTTTGAGCCAATAA 59.289 37.500 0.00 0.00 42.98 1.40
3217 4635 3.101437 TGATGCCTCATTTTGAGCCAAT 58.899 40.909 0.00 0.00 42.98 3.16
3218 4636 2.527497 TGATGCCTCATTTTGAGCCAA 58.473 42.857 0.00 0.00 42.98 4.52
3221 4639 3.181489 CCTCTTGATGCCTCATTTTGAGC 60.181 47.826 0.00 0.00 42.98 4.26
3222 4640 4.267536 TCCTCTTGATGCCTCATTTTGAG 58.732 43.478 0.00 0.00 43.91 3.02
3224 4642 5.591472 TGTATCCTCTTGATGCCTCATTTTG 59.409 40.000 0.00 0.00 35.40 2.44
3225 4643 5.591877 GTGTATCCTCTTGATGCCTCATTTT 59.408 40.000 0.00 0.00 35.40 1.82
3226 4644 5.128919 GTGTATCCTCTTGATGCCTCATTT 58.871 41.667 0.00 0.00 35.40 2.32
3227 4645 4.164796 TGTGTATCCTCTTGATGCCTCATT 59.835 41.667 0.00 0.00 35.40 2.57
3228 4646 3.713248 TGTGTATCCTCTTGATGCCTCAT 59.287 43.478 0.00 0.00 35.40 2.90
3229 4647 3.106827 TGTGTATCCTCTTGATGCCTCA 58.893 45.455 0.00 0.00 35.40 3.86
3230 4648 3.118629 TGTGTGTATCCTCTTGATGCCTC 60.119 47.826 0.00 0.00 35.40 4.70
3233 4651 6.707608 TCATTATGTGTGTATCCTCTTGATGC 59.292 38.462 0.00 0.00 36.68 3.91
3236 4654 6.127083 TGCTCATTATGTGTGTATCCTCTTGA 60.127 38.462 0.00 0.00 0.00 3.02
3237 4655 6.018425 GTGCTCATTATGTGTGTATCCTCTTG 60.018 42.308 0.00 0.00 0.00 3.02
3239 4657 5.129320 TGTGCTCATTATGTGTGTATCCTCT 59.871 40.000 0.00 0.00 0.00 3.69
3240 4658 5.235186 GTGTGCTCATTATGTGTGTATCCTC 59.765 44.000 0.00 0.00 0.00 3.71
3242 4660 4.273480 GGTGTGCTCATTATGTGTGTATCC 59.727 45.833 0.00 0.00 0.00 2.59
3244 4662 4.199310 GGGTGTGCTCATTATGTGTGTAT 58.801 43.478 0.00 0.00 0.00 2.29
3245 4663 3.605634 GGGTGTGCTCATTATGTGTGTA 58.394 45.455 0.00 0.00 0.00 2.90
3246 4664 2.436417 GGGTGTGCTCATTATGTGTGT 58.564 47.619 0.00 0.00 0.00 3.72
3247 4665 1.398041 CGGGTGTGCTCATTATGTGTG 59.602 52.381 0.00 0.00 0.00 3.82
3249 4667 1.016627 CCGGGTGTGCTCATTATGTG 58.983 55.000 0.00 0.00 0.00 3.21
3250 4668 0.748005 GCCGGGTGTGCTCATTATGT 60.748 55.000 2.18 0.00 0.00 2.29
3251 4669 1.447317 GGCCGGGTGTGCTCATTATG 61.447 60.000 2.18 0.00 0.00 1.90
3253 4671 2.252072 GAGGCCGGGTGTGCTCATTA 62.252 60.000 2.18 0.00 0.00 1.90
3254 4672 3.628646 GAGGCCGGGTGTGCTCATT 62.629 63.158 2.18 0.00 0.00 2.57
3255 4673 4.101448 GAGGCCGGGTGTGCTCAT 62.101 66.667 2.18 0.00 0.00 2.90
3261 4679 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
3262 4680 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
3264 4682 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
3266 4684 1.181741 TCCTAGCTATGCAGAGGCCG 61.182 60.000 10.92 0.23 40.13 6.13
3267 4685 1.066286 CATCCTAGCTATGCAGAGGCC 60.066 57.143 10.92 0.00 40.13 5.19
3268 4686 2.383368 CATCCTAGCTATGCAGAGGC 57.617 55.000 10.92 5.36 35.01 4.70
3275 4693 2.141517 GCTGTGTGCATCCTAGCTATG 58.858 52.381 0.00 0.00 42.31 2.23
3276 4694 1.071385 GGCTGTGTGCATCCTAGCTAT 59.929 52.381 12.70 0.00 45.15 2.97
3277 4695 0.465705 GGCTGTGTGCATCCTAGCTA 59.534 55.000 12.70 0.00 45.15 3.32
3279 4697 0.677731 TTGGCTGTGTGCATCCTAGC 60.678 55.000 0.00 0.00 45.15 3.42
3281 4699 0.399833 TGTTGGCTGTGTGCATCCTA 59.600 50.000 0.00 0.00 45.15 2.94
3282 4700 1.151221 TGTTGGCTGTGTGCATCCT 59.849 52.632 0.00 0.00 45.15 3.24
3283 4701 1.174712 AGTGTTGGCTGTGTGCATCC 61.175 55.000 0.00 0.00 45.15 3.51
3284 4702 1.522668 TAGTGTTGGCTGTGTGCATC 58.477 50.000 0.00 0.00 45.15 3.91
3285 4703 1.608590 GTTAGTGTTGGCTGTGTGCAT 59.391 47.619 0.00 0.00 45.15 3.96
3290 4708 1.003972 CGTGTGTTAGTGTTGGCTGTG 60.004 52.381 0.00 0.00 0.00 3.66
3292 4710 0.041312 GCGTGTGTTAGTGTTGGCTG 60.041 55.000 0.00 0.00 0.00 4.85
3295 4713 1.010580 TGTGCGTGTGTTAGTGTTGG 58.989 50.000 0.00 0.00 0.00 3.77
3296 4714 1.395262 TGTGTGCGTGTGTTAGTGTTG 59.605 47.619 0.00 0.00 0.00 3.33
3297 4715 1.728068 TGTGTGCGTGTGTTAGTGTT 58.272 45.000 0.00 0.00 0.00 3.32
3298 4716 1.395608 GTTGTGTGCGTGTGTTAGTGT 59.604 47.619 0.00 0.00 0.00 3.55
3299 4717 1.395262 TGTTGTGTGCGTGTGTTAGTG 59.605 47.619 0.00 0.00 0.00 2.74
3300 4718 1.728068 TGTTGTGTGCGTGTGTTAGT 58.272 45.000 0.00 0.00 0.00 2.24
3301 4719 2.159639 TGTTGTTGTGTGCGTGTGTTAG 60.160 45.455 0.00 0.00 0.00 2.34
3302 4720 1.804748 TGTTGTTGTGTGCGTGTGTTA 59.195 42.857 0.00 0.00 0.00 2.41
3303 4721 0.593618 TGTTGTTGTGTGCGTGTGTT 59.406 45.000 0.00 0.00 0.00 3.32
3304 4722 0.109964 GTGTTGTTGTGTGCGTGTGT 60.110 50.000 0.00 0.00 0.00 3.72
3307 4725 0.855670 GACGTGTTGTTGTGTGCGTG 60.856 55.000 0.00 0.00 32.56 5.34
3308 4726 1.292571 TGACGTGTTGTTGTGTGCGT 61.293 50.000 0.00 0.00 35.20 5.24
3309 4727 0.179212 TTGACGTGTTGTTGTGTGCG 60.179 50.000 0.00 0.00 0.00 5.34
3311 4729 2.603224 TGTTGACGTGTTGTTGTGTG 57.397 45.000 0.00 0.00 0.00 3.82
3312 4730 3.627732 TTTGTTGACGTGTTGTTGTGT 57.372 38.095 0.00 0.00 0.00 3.72
3313 4731 4.204168 GCTATTTGTTGACGTGTTGTTGTG 59.796 41.667 0.00 0.00 0.00 3.33
3315 4733 4.346970 TGCTATTTGTTGACGTGTTGTTG 58.653 39.130 0.00 0.00 0.00 3.33
3319 4842 5.163703 TGACTTTGCTATTTGTTGACGTGTT 60.164 36.000 0.00 0.00 0.00 3.32
3322 4845 5.689383 ATGACTTTGCTATTTGTTGACGT 57.311 34.783 0.00 0.00 0.00 4.34
3335 4858 5.582550 GGCTTTGGTCTTATATGACTTTGC 58.417 41.667 15.98 14.17 37.16 3.68
3337 4860 5.354234 CACGGCTTTGGTCTTATATGACTTT 59.646 40.000 15.98 0.00 37.16 2.66
3338 4861 4.876107 CACGGCTTTGGTCTTATATGACTT 59.124 41.667 15.98 0.00 37.16 3.01
3340 4863 3.002348 GCACGGCTTTGGTCTTATATGAC 59.998 47.826 9.70 9.70 36.31 3.06
3342 4865 2.032894 CGCACGGCTTTGGTCTTATATG 60.033 50.000 0.00 0.00 0.00 1.78
3343 4866 2.210116 CGCACGGCTTTGGTCTTATAT 58.790 47.619 0.00 0.00 0.00 0.86
3345 4868 0.321298 ACGCACGGCTTTGGTCTTAT 60.321 50.000 0.00 0.00 0.00 1.73
3346 4869 0.317799 TACGCACGGCTTTGGTCTTA 59.682 50.000 0.00 0.00 0.00 2.10
3347 4870 0.949105 CTACGCACGGCTTTGGTCTT 60.949 55.000 0.00 0.00 0.00 3.01
3348 4871 1.374252 CTACGCACGGCTTTGGTCT 60.374 57.895 0.00 0.00 0.00 3.85
3349 4872 1.373748 TCTACGCACGGCTTTGGTC 60.374 57.895 0.00 0.00 0.00 4.02
3351 4874 2.726691 CGTCTACGCACGGCTTTGG 61.727 63.158 0.00 0.00 36.07 3.28
3352 4875 1.076533 ATCGTCTACGCACGGCTTTG 61.077 55.000 0.00 0.00 40.35 2.77
3356 4879 1.074319 TTTCATCGTCTACGCACGGC 61.074 55.000 0.00 0.00 40.35 5.68
3357 4880 1.342555 TTTTCATCGTCTACGCACGG 58.657 50.000 0.00 0.00 40.35 4.94
3376 4899 9.729281 ATTATGAATTTGGTTGCTCTGATTTTT 57.271 25.926 0.00 0.00 0.00 1.94
3379 4902 8.636213 CCTATTATGAATTTGGTTGCTCTGATT 58.364 33.333 0.00 0.00 0.00 2.57
3380 4903 7.255730 GCCTATTATGAATTTGGTTGCTCTGAT 60.256 37.037 0.00 0.00 0.00 2.90
3381 4904 6.039717 GCCTATTATGAATTTGGTTGCTCTGA 59.960 38.462 0.00 0.00 0.00 3.27
3383 4906 5.893255 TGCCTATTATGAATTTGGTTGCTCT 59.107 36.000 0.00 0.00 0.00 4.09
3384 4907 6.147864 TGCCTATTATGAATTTGGTTGCTC 57.852 37.500 0.00 0.00 0.00 4.26
3386 4909 6.818142 AGTTTGCCTATTATGAATTTGGTTGC 59.182 34.615 0.00 0.00 0.00 4.17
3387 4910 9.301153 GTAGTTTGCCTATTATGAATTTGGTTG 57.699 33.333 0.00 0.00 0.00 3.77
3388 4911 9.030452 TGTAGTTTGCCTATTATGAATTTGGTT 57.970 29.630 0.00 0.00 0.00 3.67
3389 4912 8.588290 TGTAGTTTGCCTATTATGAATTTGGT 57.412 30.769 0.00 0.00 0.00 3.67
3390 4913 9.301153 GTTGTAGTTTGCCTATTATGAATTTGG 57.699 33.333 0.00 0.00 0.00 3.28
3391 4914 9.853555 TGTTGTAGTTTGCCTATTATGAATTTG 57.146 29.630 0.00 0.00 0.00 2.32
3395 4918 9.237187 TCATTGTTGTAGTTTGCCTATTATGAA 57.763 29.630 0.00 0.00 0.00 2.57
3396 4919 8.673711 GTCATTGTTGTAGTTTGCCTATTATGA 58.326 33.333 0.00 0.00 0.00 2.15
3397 4920 7.915397 GGTCATTGTTGTAGTTTGCCTATTATG 59.085 37.037 0.00 0.00 0.00 1.90
3398 4921 7.613801 TGGTCATTGTTGTAGTTTGCCTATTAT 59.386 33.333 0.00 0.00 0.00 1.28
3399 4922 6.943146 TGGTCATTGTTGTAGTTTGCCTATTA 59.057 34.615 0.00 0.00 0.00 0.98
3400 4923 5.772672 TGGTCATTGTTGTAGTTTGCCTATT 59.227 36.000 0.00 0.00 0.00 1.73
3403 4926 3.561143 TGGTCATTGTTGTAGTTTGCCT 58.439 40.909 0.00 0.00 0.00 4.75
3405 4928 6.265577 GGATATGGTCATTGTTGTAGTTTGC 58.734 40.000 0.00 0.00 0.00 3.68
3406 4929 6.486248 CGGATATGGTCATTGTTGTAGTTTG 58.514 40.000 0.00 0.00 0.00 2.93
3407 4930 5.065988 GCGGATATGGTCATTGTTGTAGTTT 59.934 40.000 0.00 0.00 0.00 2.66
3408 4931 4.574828 GCGGATATGGTCATTGTTGTAGTT 59.425 41.667 0.00 0.00 0.00 2.24
3409 4932 4.127171 GCGGATATGGTCATTGTTGTAGT 58.873 43.478 0.00 0.00 0.00 2.73
3410 4933 4.126437 TGCGGATATGGTCATTGTTGTAG 58.874 43.478 0.00 0.00 0.00 2.74
3411 4934 4.143986 TGCGGATATGGTCATTGTTGTA 57.856 40.909 0.00 0.00 0.00 2.41
3413 4936 3.128415 TGTTGCGGATATGGTCATTGTTG 59.872 43.478 0.00 0.00 0.00 3.33
3414 4937 3.351740 TGTTGCGGATATGGTCATTGTT 58.648 40.909 0.00 0.00 0.00 2.83
3415 4938 2.997980 TGTTGCGGATATGGTCATTGT 58.002 42.857 0.00 0.00 0.00 2.71
3416 4939 4.572985 ATTGTTGCGGATATGGTCATTG 57.427 40.909 0.00 0.00 0.00 2.82
3417 4940 6.265196 ACATAATTGTTGCGGATATGGTCATT 59.735 34.615 0.55 0.00 29.55 2.57
3418 4941 5.769662 ACATAATTGTTGCGGATATGGTCAT 59.230 36.000 0.55 0.00 29.55 3.06
3419 4942 5.129634 ACATAATTGTTGCGGATATGGTCA 58.870 37.500 0.55 0.00 29.55 4.02
3420 4943 5.334879 GGACATAATTGTTGCGGATATGGTC 60.335 44.000 0.55 0.00 35.79 4.02
3421 4944 4.518970 GGACATAATTGTTGCGGATATGGT 59.481 41.667 0.55 0.00 35.79 3.55
3422 4945 4.378356 CGGACATAATTGTTGCGGATATGG 60.378 45.833 0.55 0.00 35.79 2.74
3423 4946 4.378356 CCGGACATAATTGTTGCGGATATG 60.378 45.833 0.00 0.00 35.79 1.78
3424 4947 3.751175 CCGGACATAATTGTTGCGGATAT 59.249 43.478 0.00 0.00 35.79 1.63
3425 4948 3.135225 CCGGACATAATTGTTGCGGATA 58.865 45.455 0.00 0.00 35.79 2.59
3426 4949 1.946768 CCGGACATAATTGTTGCGGAT 59.053 47.619 0.00 0.00 35.79 4.18
3427 4950 1.066071 TCCGGACATAATTGTTGCGGA 60.066 47.619 0.00 12.36 35.79 5.54
3428 4951 1.374560 TCCGGACATAATTGTTGCGG 58.625 50.000 0.00 8.74 35.79 5.69
3429 4952 2.611751 TCATCCGGACATAATTGTTGCG 59.388 45.455 6.12 0.00 35.79 4.85
3445 4968 2.109126 GGCGCTTGTCCTGTCATCC 61.109 63.158 7.64 0.00 0.00 3.51
3530 5180 0.984230 TGAAAGTCGAATCTGGCCCT 59.016 50.000 0.00 0.00 0.00 5.19
3554 5204 4.457496 CCGGCAGCACTGATCGGT 62.457 66.667 18.50 0.00 40.96 4.69
3641 5294 3.016031 ACAGCGATGCATTGGATAAACA 58.984 40.909 15.85 0.00 0.00 2.83
3701 5356 2.559668 CAATCCACATCAAGGTTGCTGT 59.440 45.455 0.00 0.00 37.97 4.40
3706 5361 1.176527 CCGCAATCCACATCAAGGTT 58.823 50.000 0.00 0.00 0.00 3.50
3755 5410 4.023193 GTCAACCACCGAAATTGAAGTGAT 60.023 41.667 4.11 0.00 34.28 3.06
3820 5475 1.077501 CGATGCACCACCATCCCTT 60.078 57.895 0.00 0.00 38.68 3.95
4002 5734 5.297776 CCTGAAAAATCAGTCCGAGCATATT 59.702 40.000 5.23 0.00 36.06 1.28
4034 6088 3.126831 CCACTTATGGTCAGAATCGAGC 58.873 50.000 0.00 0.00 41.64 5.03
4065 6119 1.006805 GCTCAGTCGCCGCTATCAT 60.007 57.895 0.00 0.00 0.00 2.45
4107 6163 6.317088 CAATAATGCACGATTCTTCAACAGT 58.683 36.000 0.00 0.00 0.00 3.55
4198 6498 3.674682 CGACTCCATTAGGCAGCTATAGC 60.675 52.174 17.33 17.33 36.58 2.97
4199 6499 3.508012 ACGACTCCATTAGGCAGCTATAG 59.492 47.826 0.00 0.00 29.38 1.31
4200 6500 3.497332 ACGACTCCATTAGGCAGCTATA 58.503 45.455 0.00 0.00 29.38 1.31
4201 6501 2.320781 ACGACTCCATTAGGCAGCTAT 58.679 47.619 0.00 0.00 29.38 2.97
4202 6502 1.776662 ACGACTCCATTAGGCAGCTA 58.223 50.000 0.00 0.00 29.38 3.32
4203 6503 0.905357 AACGACTCCATTAGGCAGCT 59.095 50.000 0.00 0.00 29.38 4.24
4204 6504 2.474816 CTAACGACTCCATTAGGCAGC 58.525 52.381 0.00 0.00 29.38 5.25
4219 6519 1.359459 GCCTTGGACGCTTCCTAACG 61.359 60.000 11.01 0.00 43.31 3.18
4238 6542 1.602668 CGTGTGCTTGATTTGGTTGGG 60.603 52.381 0.00 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.