Multiple sequence alignment - TraesCS3D01G162000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G162000 chr3D 100.000 2533 0 0 1 2533 132628615 132626083 0.000000e+00 4678
1 TraesCS3D01G162000 chr3D 88.070 570 61 3 1 569 281096373 281095810 0.000000e+00 669
2 TraesCS3D01G162000 chr4D 94.864 1986 75 8 570 2533 43272763 43270783 0.000000e+00 3077
3 TraesCS3D01G162000 chr4D 88.319 565 61 3 6 569 223334275 223333715 0.000000e+00 673
4 TraesCS3D01G162000 chr4D 87.922 563 66 2 6 567 243571314 243570753 0.000000e+00 662
5 TraesCS3D01G162000 chr4D 90.753 465 42 1 6 469 105428097 105428561 9.950000e-174 619
6 TraesCS3D01G162000 chr4D 89.050 484 48 5 1 481 113103112 113102631 1.680000e-166 595
7 TraesCS3D01G162000 chr4D 88.797 482 52 2 1 481 126400772 126400292 7.800000e-165 590
8 TraesCS3D01G162000 chr4D 91.304 92 8 0 478 569 113102009 113101918 2.650000e-25 126
9 TraesCS3D01G162000 chr4D 91.304 92 8 0 478 569 485102969 485102878 2.650000e-25 126
10 TraesCS3D01G162000 chr4D 92.208 77 6 0 492 568 230009260 230009336 2.660000e-20 110
11 TraesCS3D01G162000 chr5B 94.005 1985 94 9 570 2533 680230618 680228638 0.000000e+00 2983
12 TraesCS3D01G162000 chr5B 93.350 1985 104 11 570 2533 508124524 508122547 0.000000e+00 2909
13 TraesCS3D01G162000 chr5B 92.507 2002 93 16 561 2533 641128788 641126815 0.000000e+00 2813
14 TraesCS3D01G162000 chr3B 93.857 1986 92 10 573 2533 548772277 548774257 0.000000e+00 2964
15 TraesCS3D01G162000 chr3B 93.391 1982 104 10 573 2533 548242939 548244914 0.000000e+00 2909
16 TraesCS3D01G162000 chr3B 93.012 1989 86 20 568 2533 599079413 599077455 0.000000e+00 2854
17 TraesCS3D01G162000 chr3B 92.667 1991 92 16 570 2533 812516874 812514911 0.000000e+00 2819
18 TraesCS3D01G162000 chr3B 94.391 1551 64 8 1004 2532 548472452 548474001 0.000000e+00 2361
19 TraesCS3D01G162000 chrUn 93.728 1993 74 13 570 2533 93726510 93724540 0.000000e+00 2940
20 TraesCS3D01G162000 chrUn 87.273 495 61 2 1 495 268757112 268756620 4.730000e-157 564
21 TraesCS3D01G162000 chrUn 87.368 475 49 10 1 469 27307800 27308269 3.710000e-148 534
22 TraesCS3D01G162000 chrUn 87.002 477 47 12 1 469 39496850 39497319 8.030000e-145 523
23 TraesCS3D01G162000 chrUn 86.920 474 53 8 1 469 93107412 93106943 8.030000e-145 523
24 TraesCS3D01G162000 chrUn 86.475 488 53 13 1 481 151326461 151325980 8.030000e-145 523
25 TraesCS3D01G162000 chrUn 86.448 487 55 10 1 481 162618547 162618066 8.030000e-145 523
26 TraesCS3D01G162000 chrUn 86.448 487 55 11 1 481 162624171 162623690 8.030000e-145 523
27 TraesCS3D01G162000 chrUn 87.152 467 53 7 6 469 300394558 300395020 8.030000e-145 523
28 TraesCS3D01G162000 chrUn 87.152 467 53 7 6 469 300427451 300427913 8.030000e-145 523
29 TraesCS3D01G162000 chrUn 87.152 467 53 7 6 469 351919843 351920305 8.030000e-145 523
30 TraesCS3D01G162000 chr6A 92.878 2008 88 17 555 2533 617222886 617220905 0.000000e+00 2865
31 TraesCS3D01G162000 chr6A 92.771 1992 93 16 567 2533 147430858 147428893 0.000000e+00 2833
32 TraesCS3D01G162000 chr6A 88.266 571 62 5 1 569 526309847 526310414 0.000000e+00 678
33 TraesCS3D01G162000 chr6A 87.937 572 62 5 1 569 181708049 181708616 0.000000e+00 667
34 TraesCS3D01G162000 chr4B 93.065 1990 85 15 570 2533 578529982 578528020 0.000000e+00 2861
35 TraesCS3D01G162000 chr4B 87.257 565 67 5 7 569 373061590 373062151 7.640000e-180 640
36 TraesCS3D01G162000 chr4B 90.269 483 43 4 1 481 290993024 290992544 1.650000e-176 628
37 TraesCS3D01G162000 chr4B 90.343 466 45 0 1 466 154813855 154813390 1.670000e-171 612
38 TraesCS3D01G162000 chr2B 92.657 2002 91 17 560 2533 776222952 776224925 0.000000e+00 2832
39 TraesCS3D01G162000 chr2B 92.615 2004 92 21 558 2531 4739862 4741839 0.000000e+00 2830
40 TraesCS3D01G162000 chr7D 92.760 1989 81 18 570 2533 94497477 94495527 0.000000e+00 2817
41 TraesCS3D01G162000 chr7D 91.594 571 44 4 1 569 388085817 388086385 0.000000e+00 785
42 TraesCS3D01G162000 chr7D 89.317 571 58 3 1 569 265325003 265324434 0.000000e+00 713
43 TraesCS3D01G162000 chr7D 88.752 569 62 2 1 569 397920622 397920056 0.000000e+00 695
44 TraesCS3D01G162000 chr2D 93.650 1685 68 18 875 2533 16065749 16067420 0.000000e+00 2483
45 TraesCS3D01G162000 chr5D 87.654 1547 130 31 936 2436 18407665 18406134 0.000000e+00 1742
46 TraesCS3D01G162000 chr5D 91.213 569 46 3 1 569 171716910 171717474 0.000000e+00 771
47 TraesCS3D01G162000 chr1D 91.327 565 47 2 6 569 185202414 185201851 0.000000e+00 771
48 TraesCS3D01G162000 chr1D 91.132 530 44 3 1 529 128060695 128061222 0.000000e+00 715
49 TraesCS3D01G162000 chr1D 90.870 471 40 3 1 469 77041070 77041539 1.650000e-176 628
50 TraesCS3D01G162000 chr1D 89.212 482 49 3 1 481 148532129 148531650 1.300000e-167 599
51 TraesCS3D01G162000 chr7A 89.204 565 58 3 1 563 414038430 414037867 0.000000e+00 702
52 TraesCS3D01G162000 chr7A 89.007 564 59 3 8 569 294739700 294739138 0.000000e+00 695
53 TraesCS3D01G162000 chr1A 88.947 570 61 2 1 569 219215705 219216273 0.000000e+00 702
54 TraesCS3D01G162000 chr1A 88.772 570 59 4 1 569 311961908 311962473 0.000000e+00 693
55 TraesCS3D01G162000 chr1A 86.760 574 64 9 1 569 150714296 150714862 1.650000e-176 628
56 TraesCS3D01G162000 chr1A 86.596 567 72 4 6 569 519004034 519004599 7.700000e-175 623
57 TraesCS3D01G162000 chr3A 89.305 561 56 4 1 559 423033325 423032767 0.000000e+00 701
58 TraesCS3D01G162000 chr3A 88.772 570 60 4 1 569 230553063 230553629 0.000000e+00 695
59 TraesCS3D01G162000 chr5A 88.850 565 60 3 6 569 89864481 89863919 0.000000e+00 691
60 TraesCS3D01G162000 chr6D 89.540 478 47 3 6 481 304493392 304492916 1.000000e-168 603
61 TraesCS3D01G162000 chr6D 89.050 484 47 6 1 481 394766326 394765846 1.680000e-166 595
62 TraesCS3D01G162000 chr6D 89.574 470 46 3 1 469 442485209 442484742 6.030000e-166 593
63 TraesCS3D01G162000 chr6D 89.172 471 48 3 1 469 156768447 156768916 3.630000e-163 584
64 TraesCS3D01G162000 chr6D 89.195 472 46 4 1 469 237464927 237465396 3.630000e-163 584
65 TraesCS3D01G162000 chr6D 88.412 466 54 0 1 466 101316569 101317034 1.700000e-156 562
66 TraesCS3D01G162000 chr6D 88.186 474 46 9 1 469 440512404 440512872 7.920000e-155 556
67 TraesCS3D01G162000 chr6D 87.474 487 51 9 1 481 306829496 306829014 1.020000e-153 553
68 TraesCS3D01G162000 chr6D 89.474 95 10 0 475 569 156780623 156780717 1.230000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G162000 chr3D 132626083 132628615 2532 True 4678.0 4678 100.000 1 2533 1 chr3D.!!$R1 2532
1 TraesCS3D01G162000 chr3D 281095810 281096373 563 True 669.0 669 88.070 1 569 1 chr3D.!!$R2 568
2 TraesCS3D01G162000 chr4D 43270783 43272763 1980 True 3077.0 3077 94.864 570 2533 1 chr4D.!!$R1 1963
3 TraesCS3D01G162000 chr4D 223333715 223334275 560 True 673.0 673 88.319 6 569 1 chr4D.!!$R3 563
4 TraesCS3D01G162000 chr4D 243570753 243571314 561 True 662.0 662 87.922 6 567 1 chr4D.!!$R4 561
5 TraesCS3D01G162000 chr4D 113101918 113103112 1194 True 360.5 595 90.177 1 569 2 chr4D.!!$R6 568
6 TraesCS3D01G162000 chr5B 680228638 680230618 1980 True 2983.0 2983 94.005 570 2533 1 chr5B.!!$R3 1963
7 TraesCS3D01G162000 chr5B 508122547 508124524 1977 True 2909.0 2909 93.350 570 2533 1 chr5B.!!$R1 1963
8 TraesCS3D01G162000 chr5B 641126815 641128788 1973 True 2813.0 2813 92.507 561 2533 1 chr5B.!!$R2 1972
9 TraesCS3D01G162000 chr3B 548772277 548774257 1980 False 2964.0 2964 93.857 573 2533 1 chr3B.!!$F3 1960
10 TraesCS3D01G162000 chr3B 548242939 548244914 1975 False 2909.0 2909 93.391 573 2533 1 chr3B.!!$F1 1960
11 TraesCS3D01G162000 chr3B 599077455 599079413 1958 True 2854.0 2854 93.012 568 2533 1 chr3B.!!$R1 1965
12 TraesCS3D01G162000 chr3B 812514911 812516874 1963 True 2819.0 2819 92.667 570 2533 1 chr3B.!!$R2 1963
13 TraesCS3D01G162000 chr3B 548472452 548474001 1549 False 2361.0 2361 94.391 1004 2532 1 chr3B.!!$F2 1528
14 TraesCS3D01G162000 chrUn 93724540 93726510 1970 True 2940.0 2940 93.728 570 2533 1 chrUn.!!$R2 1963
15 TraesCS3D01G162000 chr6A 617220905 617222886 1981 True 2865.0 2865 92.878 555 2533 1 chr6A.!!$R2 1978
16 TraesCS3D01G162000 chr6A 147428893 147430858 1965 True 2833.0 2833 92.771 567 2533 1 chr6A.!!$R1 1966
17 TraesCS3D01G162000 chr6A 526309847 526310414 567 False 678.0 678 88.266 1 569 1 chr6A.!!$F2 568
18 TraesCS3D01G162000 chr6A 181708049 181708616 567 False 667.0 667 87.937 1 569 1 chr6A.!!$F1 568
19 TraesCS3D01G162000 chr4B 578528020 578529982 1962 True 2861.0 2861 93.065 570 2533 1 chr4B.!!$R3 1963
20 TraesCS3D01G162000 chr4B 373061590 373062151 561 False 640.0 640 87.257 7 569 1 chr4B.!!$F1 562
21 TraesCS3D01G162000 chr2B 776222952 776224925 1973 False 2832.0 2832 92.657 560 2533 1 chr2B.!!$F2 1973
22 TraesCS3D01G162000 chr2B 4739862 4741839 1977 False 2830.0 2830 92.615 558 2531 1 chr2B.!!$F1 1973
23 TraesCS3D01G162000 chr7D 94495527 94497477 1950 True 2817.0 2817 92.760 570 2533 1 chr7D.!!$R1 1963
24 TraesCS3D01G162000 chr7D 388085817 388086385 568 False 785.0 785 91.594 1 569 1 chr7D.!!$F1 568
25 TraesCS3D01G162000 chr7D 265324434 265325003 569 True 713.0 713 89.317 1 569 1 chr7D.!!$R2 568
26 TraesCS3D01G162000 chr7D 397920056 397920622 566 True 695.0 695 88.752 1 569 1 chr7D.!!$R3 568
27 TraesCS3D01G162000 chr2D 16065749 16067420 1671 False 2483.0 2483 93.650 875 2533 1 chr2D.!!$F1 1658
28 TraesCS3D01G162000 chr5D 18406134 18407665 1531 True 1742.0 1742 87.654 936 2436 1 chr5D.!!$R1 1500
29 TraesCS3D01G162000 chr5D 171716910 171717474 564 False 771.0 771 91.213 1 569 1 chr5D.!!$F1 568
30 TraesCS3D01G162000 chr1D 185201851 185202414 563 True 771.0 771 91.327 6 569 1 chr1D.!!$R2 563
31 TraesCS3D01G162000 chr1D 128060695 128061222 527 False 715.0 715 91.132 1 529 1 chr1D.!!$F2 528
32 TraesCS3D01G162000 chr7A 414037867 414038430 563 True 702.0 702 89.204 1 563 1 chr7A.!!$R2 562
33 TraesCS3D01G162000 chr7A 294739138 294739700 562 True 695.0 695 89.007 8 569 1 chr7A.!!$R1 561
34 TraesCS3D01G162000 chr1A 219215705 219216273 568 False 702.0 702 88.947 1 569 1 chr1A.!!$F2 568
35 TraesCS3D01G162000 chr1A 311961908 311962473 565 False 693.0 693 88.772 1 569 1 chr1A.!!$F3 568
36 TraesCS3D01G162000 chr1A 150714296 150714862 566 False 628.0 628 86.760 1 569 1 chr1A.!!$F1 568
37 TraesCS3D01G162000 chr1A 519004034 519004599 565 False 623.0 623 86.596 6 569 1 chr1A.!!$F4 563
38 TraesCS3D01G162000 chr3A 423032767 423033325 558 True 701.0 701 89.305 1 559 1 chr3A.!!$R1 558
39 TraesCS3D01G162000 chr3A 230553063 230553629 566 False 695.0 695 88.772 1 569 1 chr3A.!!$F1 568
40 TraesCS3D01G162000 chr5A 89863919 89864481 562 True 691.0 691 88.850 6 569 1 chr5A.!!$R1 563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
689 1328 0.878961 GTTCCGTGAACTCTGCCGTT 60.879 55.0 8.87 0.0 39.23 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1774 2515 0.32336 TGCAGTTGGCCCATTAGTCC 60.323 55.0 0.0 0.0 43.89 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
273 283 2.531508 GTCAGCGCAAAAGTTTCTGTTG 59.468 45.455 11.47 0.00 32.26 3.33
338 349 5.010282 AGGTCTTACTTGGCACTTTATTGG 58.990 41.667 0.00 0.00 0.00 3.16
390 401 8.615878 ACAGTAGCTTAATCATGTTAACACAA 57.384 30.769 11.22 2.08 36.16 3.33
447 458 5.918011 CCAACAAGCGCTTTTCTTTAATGTA 59.082 36.000 22.51 0.00 0.00 2.29
504 1142 4.211920 TCCAAACCCAATTCCGATAATCC 58.788 43.478 0.00 0.00 0.00 3.01
689 1328 0.878961 GTTCCGTGAACTCTGCCGTT 60.879 55.000 8.87 0.00 39.23 4.44
710 1349 0.951558 CCGTCAGGTCAACCTTTTGG 59.048 55.000 0.00 0.00 46.09 3.28
729 1368 2.203877 TCGGCCCTTACAGGTGGT 60.204 61.111 0.00 0.00 31.93 4.16
858 1498 4.662961 CGACAGCAGCGGTGACCA 62.663 66.667 20.69 0.00 34.87 4.02
859 1499 3.044305 GACAGCAGCGGTGACCAC 61.044 66.667 20.69 0.00 34.87 4.16
860 1500 4.969196 ACAGCAGCGGTGACCACG 62.969 66.667 20.69 3.25 34.87 4.94
868 1508 3.986006 GGTGACCACGGCGACAGA 61.986 66.667 16.62 0.00 0.00 3.41
869 1509 2.430921 GTGACCACGGCGACAGAG 60.431 66.667 16.62 0.00 0.00 3.35
870 1510 2.596338 TGACCACGGCGACAGAGA 60.596 61.111 16.62 0.00 0.00 3.10
871 1511 2.179517 GACCACGGCGACAGAGAG 59.820 66.667 16.62 0.00 0.00 3.20
872 1512 3.973267 GACCACGGCGACAGAGAGC 62.973 68.421 16.62 0.00 0.00 4.09
963 1667 1.268283 GGAAGCTAGCTGTGGAGGGT 61.268 60.000 20.16 0.00 0.00 4.34
1075 1779 3.430929 GGACATGCCTATCTTCGTCTGTT 60.431 47.826 0.00 0.00 0.00 3.16
1130 1835 0.600255 CACACACCGAGGAACCAGAC 60.600 60.000 0.00 0.00 0.00 3.51
1144 1849 1.271271 ACCAGACTCGTCCGTTCTACT 60.271 52.381 0.00 0.00 0.00 2.57
1173 1878 2.102588 CGAGAATGGGGTAAGAATCGGT 59.897 50.000 0.00 0.00 0.00 4.69
1215 1920 1.281867 TCGGGATCTTTGAGCAATGGT 59.718 47.619 0.00 0.00 0.00 3.55
1278 1983 2.725312 GGTCGATGCTCTGGCCAGA 61.725 63.158 33.04 33.04 37.74 3.86
1279 1984 1.520342 GTCGATGCTCTGGCCAGAC 60.520 63.158 32.00 25.76 37.74 3.51
1280 1985 1.683707 TCGATGCTCTGGCCAGACT 60.684 57.895 32.00 18.55 37.74 3.24
1412 2135 4.216257 GCTGTTGAGCTTAGGATGTTGAAA 59.784 41.667 0.00 0.00 42.52 2.69
1466 2192 5.428131 ACCACCAATACCCATTTGCAAATAT 59.572 36.000 23.69 14.58 0.00 1.28
1474 2200 5.885465 ACCCATTTGCAAATATTTTTGGGA 58.115 33.333 36.19 7.30 42.09 4.37
1479 2205 9.356433 CCATTTGCAAATATTTTTGGGAATTTC 57.644 29.630 23.69 0.00 42.09 2.17
1810 2551 2.701951 CTGCATCCAATTAGGCCCATTT 59.298 45.455 0.00 0.00 37.29 2.32
2005 2784 9.787532 ATTCAAATACACCGTGATTTAAATCAG 57.212 29.630 27.26 19.68 45.38 2.90
2036 2815 3.229293 TGTCATGGAAAATGTGCCTCAA 58.771 40.909 0.00 0.00 0.00 3.02
2525 3322 2.847327 TGAAACAGAGGGCTTCTCAG 57.153 50.000 0.00 4.90 44.81 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 5.933187 TGCATAGTTCGCTTGTTTTCTAA 57.067 34.783 0.00 0.0 0.00 2.10
273 283 7.695618 GTGATAGTTGATTTGATCTTGCTGAAC 59.304 37.037 0.00 0.0 0.00 3.18
729 1368 3.449227 CGTCTCTGCCGCCTGGTA 61.449 66.667 0.00 0.0 37.67 3.25
748 1387 5.219633 GTGCAACGGTCTGAATAAAATTGT 58.780 37.500 0.00 0.0 0.00 2.71
851 1491 3.916392 CTCTGTCGCCGTGGTCACC 62.916 68.421 0.00 0.0 0.00 4.02
852 1492 2.430921 CTCTGTCGCCGTGGTCAC 60.431 66.667 0.00 0.0 0.00 3.67
853 1493 2.596338 TCTCTGTCGCCGTGGTCA 60.596 61.111 0.00 0.0 0.00 4.02
854 1494 2.179517 CTCTCTGTCGCCGTGGTC 59.820 66.667 0.00 0.0 0.00 4.02
855 1495 4.057428 GCTCTCTGTCGCCGTGGT 62.057 66.667 0.00 0.0 0.00 4.16
856 1496 4.056125 TGCTCTCTGTCGCCGTGG 62.056 66.667 0.00 0.0 0.00 4.94
857 1497 2.807045 GTGCTCTCTGTCGCCGTG 60.807 66.667 0.00 0.0 0.00 4.94
858 1498 4.406173 CGTGCTCTCTGTCGCCGT 62.406 66.667 0.00 0.0 0.00 5.68
863 1503 4.057428 ACCGCCGTGCTCTCTGTC 62.057 66.667 0.00 0.0 0.00 3.51
864 1504 4.363990 CACCGCCGTGCTCTCTGT 62.364 66.667 0.00 0.0 32.04 3.41
865 1505 4.056125 TCACCGCCGTGCTCTCTG 62.056 66.667 0.00 0.0 40.04 3.35
866 1506 4.057428 GTCACCGCCGTGCTCTCT 62.057 66.667 0.00 0.0 40.04 3.10
919 1623 3.775654 GCGCCCTCCACAGCTAGT 61.776 66.667 0.00 0.0 0.00 2.57
963 1667 1.141019 GGATCTCAACGCTACCGCA 59.859 57.895 0.00 0.0 38.22 5.69
1091 1796 0.974383 AGAAACCCTCCGATCAACGT 59.026 50.000 0.00 0.0 40.78 3.99
1130 1835 1.335597 TGCACAAGTAGAACGGACGAG 60.336 52.381 0.00 0.0 0.00 4.18
1144 1849 0.179004 ACCCCATTCTCGTTGCACAA 60.179 50.000 0.00 0.0 0.00 3.33
1215 1920 4.099113 TGCATGAACACCAAACAGATCAAA 59.901 37.500 0.00 0.0 0.00 2.69
1278 1983 4.942483 CCATTCTTCATGCTCTTCTTGAGT 59.058 41.667 0.00 0.0 44.41 3.41
1279 1984 4.942483 ACCATTCTTCATGCTCTTCTTGAG 59.058 41.667 0.00 0.0 45.33 3.02
1280 1985 4.914983 ACCATTCTTCATGCTCTTCTTGA 58.085 39.130 0.00 0.0 0.00 3.02
1412 2135 5.941788 TCTTCAAGCTTCCTAACCTTCTTT 58.058 37.500 0.00 0.0 0.00 2.52
1444 2170 7.862512 AAATATTTGCAAATGGGTATTGGTG 57.137 32.000 30.43 0.0 0.00 4.17
1466 2192 9.777008 ATTACCATACCTAGAAATTCCCAAAAA 57.223 29.630 0.00 0.0 0.00 1.94
1474 2200 7.993183 CCAGTGTGATTACCATACCTAGAAATT 59.007 37.037 0.00 0.0 37.58 1.82
1479 2205 5.871396 ACCAGTGTGATTACCATACCTAG 57.129 43.478 0.00 0.0 37.58 3.02
1774 2515 0.323360 TGCAGTTGGCCCATTAGTCC 60.323 55.000 0.00 0.0 43.89 3.85
1810 2551 1.990160 AACACGCAAGAGAACCCCCA 61.990 55.000 0.00 0.0 43.62 4.96
2005 2784 6.366877 CACATTTTCCATGACATTTTGGTCTC 59.633 38.462 0.00 0.0 38.61 3.36
2036 2815 4.129317 AGGTGTAAACCTCTACCAGAGT 57.871 45.455 0.00 0.0 40.72 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.