Multiple sequence alignment - TraesCS3D01G160700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G160700 chr3D 100.000 3253 0 0 1 3253 131354122 131350870 0 6008
1 TraesCS3D01G160700 chr3B 91.974 2417 103 40 8 2385 187805577 187803213 0 3304
2 TraesCS3D01G160700 chr3B 94.226 814 32 5 2449 3253 187803125 187802318 0 1229
3 TraesCS3D01G160700 chr3A 86.574 2458 137 80 2 2385 144154410 144152072 0 2532
4 TraesCS3D01G160700 chr3A 92.534 884 33 12 2388 3253 144152028 144151160 0 1236


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G160700 chr3D 131350870 131354122 3252 True 6008.0 6008 100.000 1 3253 1 chr3D.!!$R1 3252
1 TraesCS3D01G160700 chr3B 187802318 187805577 3259 True 2266.5 3304 93.100 8 3253 2 chr3B.!!$R1 3245
2 TraesCS3D01G160700 chr3A 144151160 144154410 3250 True 1884.0 2532 89.554 2 3253 2 chr3A.!!$R1 3251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.098200 TATCACCGTCGCGTCTTCTG 59.902 55.0 5.77 0.0 0.0 3.02 F
388 408 0.319555 CCTCGTGTTTCTTCAGGCGA 60.320 55.0 0.00 0.0 0.0 5.54 F
390 410 0.319555 TCGTGTTTCTTCAGGCGAGG 60.320 55.0 0.00 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1130 1193 0.388649 GTCGTGTGCTTCATCGTCCT 60.389 55.000 0.00 0.00 0.00 3.85 R
2178 2271 0.036010 CTCACAAGAACCGGGCATCT 60.036 55.000 6.32 3.27 0.00 2.90 R
2386 2490 1.558756 CAGAGCAGACTCCCCTCAAAT 59.441 52.381 0.00 0.00 44.65 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.319040 CCCAGCTGATATCACCGTCG 60.319 60.000 17.39 0.00 0.00 5.12
61 62 0.098200 TATCACCGTCGCGTCTTCTG 59.902 55.000 5.77 0.00 0.00 3.02
74 75 2.414029 CGTCTTCTGCAGAGTGAGAGAC 60.414 54.545 25.68 25.68 29.34 3.36
316 336 2.897350 CCCGCTTCCATCGGCTTC 60.897 66.667 0.00 0.00 45.19 3.86
366 386 2.840651 TCCCACCAATCTCTTTCTCTCC 59.159 50.000 0.00 0.00 0.00 3.71
385 405 0.321653 CCCCCTCGTGTTTCTTCAGG 60.322 60.000 0.00 0.00 0.00 3.86
386 406 0.955919 CCCCTCGTGTTTCTTCAGGC 60.956 60.000 0.00 0.00 0.00 4.85
387 407 1.291877 CCCTCGTGTTTCTTCAGGCG 61.292 60.000 0.00 0.00 0.00 5.52
388 408 0.319555 CCTCGTGTTTCTTCAGGCGA 60.320 55.000 0.00 0.00 0.00 5.54
389 409 1.063806 CTCGTGTTTCTTCAGGCGAG 58.936 55.000 0.00 0.00 39.50 5.03
390 410 0.319555 TCGTGTTTCTTCAGGCGAGG 60.320 55.000 0.00 0.00 0.00 4.63
391 411 1.291877 CGTGTTTCTTCAGGCGAGGG 61.292 60.000 0.00 0.00 0.00 4.30
392 412 1.302511 TGTTTCTTCAGGCGAGGGC 60.303 57.895 0.00 0.00 38.90 5.19
503 524 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
531 552 4.349365 TCCTCCCTCTTTCTTCTTCTCTC 58.651 47.826 0.00 0.00 0.00 3.20
532 553 4.093011 CCTCCCTCTTTCTTCTTCTCTCA 58.907 47.826 0.00 0.00 0.00 3.27
611 648 6.495706 GTGTCGTTTCTTCTTTCAGGAAAAT 58.504 36.000 0.00 0.00 32.00 1.82
612 649 7.517734 CGTGTCGTTTCTTCTTTCAGGAAAATA 60.518 37.037 0.00 0.00 32.00 1.40
613 650 8.290325 GTGTCGTTTCTTCTTTCAGGAAAATAT 58.710 33.333 0.00 0.00 32.00 1.28
614 651 9.496873 TGTCGTTTCTTCTTTCAGGAAAATATA 57.503 29.630 0.00 0.00 32.00 0.86
721 774 3.507233 TGAAGTTGGTCCATTCAGCATTC 59.493 43.478 4.11 0.00 0.00 2.67
729 785 4.100498 GGTCCATTCAGCATTCATCCATTT 59.900 41.667 0.00 0.00 0.00 2.32
732 788 5.659525 TCCATTCAGCATTCATCCATTTTCT 59.340 36.000 0.00 0.00 0.00 2.52
733 789 6.155565 TCCATTCAGCATTCATCCATTTTCTT 59.844 34.615 0.00 0.00 0.00 2.52
734 790 6.479001 CCATTCAGCATTCATCCATTTTCTTC 59.521 38.462 0.00 0.00 0.00 2.87
735 791 6.845758 TTCAGCATTCATCCATTTTCTTCT 57.154 33.333 0.00 0.00 0.00 2.85
736 792 6.845758 TCAGCATTCATCCATTTTCTTCTT 57.154 33.333 0.00 0.00 0.00 2.52
737 793 7.235935 TCAGCATTCATCCATTTTCTTCTTT 57.764 32.000 0.00 0.00 0.00 2.52
738 794 7.094631 TCAGCATTCATCCATTTTCTTCTTTG 58.905 34.615 0.00 0.00 0.00 2.77
745 801 8.876275 TCATCCATTTTCTTCTTTGTTCTTTG 57.124 30.769 0.00 0.00 0.00 2.77
746 802 7.927629 TCATCCATTTTCTTCTTTGTTCTTTGG 59.072 33.333 0.00 0.00 0.00 3.28
756 812 4.159506 TCTTTGTTCTTTGGTCTTTGGTGG 59.840 41.667 0.00 0.00 0.00 4.61
838 895 4.941873 CCCCAAACAATTCTGGTCTACTAC 59.058 45.833 0.00 0.00 0.00 2.73
840 897 5.875359 CCCAAACAATTCTGGTCTACTACTC 59.125 44.000 0.00 0.00 0.00 2.59
916 976 9.906660 TCTTCAATTATAGCGTCAAAATTTTGT 57.093 25.926 25.98 12.59 39.18 2.83
948 1008 5.440234 TTGCAATTCTTACCAAAAGCGTA 57.560 34.783 0.00 0.00 0.00 4.42
949 1009 5.637006 TGCAATTCTTACCAAAAGCGTAT 57.363 34.783 0.00 0.00 0.00 3.06
983 1043 3.293311 TCTTCCCATATAAGCGTACGC 57.707 47.619 32.17 32.17 42.33 4.42
1009 1072 7.487189 CCAAACTTGCAATCTTCAGATGATTAC 59.513 37.037 10.46 6.73 34.49 1.89
1037 1100 2.943690 CCAAGATCTCATTGCTCCACAG 59.056 50.000 0.00 0.00 0.00 3.66
1087 1150 2.322355 ATCAAATCCTCGCCTCACAG 57.678 50.000 0.00 0.00 0.00 3.66
1090 1153 1.841302 AAATCCTCGCCTCACAGCCA 61.841 55.000 0.00 0.00 0.00 4.75
1091 1154 2.249413 AATCCTCGCCTCACAGCCAG 62.249 60.000 0.00 0.00 0.00 4.85
1576 1639 2.202362 CTCGTCTGCCTCGTCGTG 60.202 66.667 0.00 0.00 0.00 4.35
1621 1684 1.592400 CCAGCGTCCTCGTCAAGGTA 61.592 60.000 0.00 0.00 46.32 3.08
1661 1724 5.424757 CGTCACCTTAAATTCAGTATCCCA 58.575 41.667 0.00 0.00 0.00 4.37
1866 1929 3.192422 CCTCCATCCAGCTCTACTATTCG 59.808 52.174 0.00 0.00 0.00 3.34
1899 1962 0.389948 CCAGCGGTCAGGTAGTGTTC 60.390 60.000 0.00 0.00 0.00 3.18
1900 1963 0.603569 CAGCGGTCAGGTAGTGTTCT 59.396 55.000 0.00 0.00 0.00 3.01
1901 1964 0.603569 AGCGGTCAGGTAGTGTTCTG 59.396 55.000 0.00 0.00 0.00 3.02
1903 1966 1.270147 GCGGTCAGGTAGTGTTCTGTT 60.270 52.381 0.00 0.00 33.13 3.16
1904 1967 2.805657 GCGGTCAGGTAGTGTTCTGTTT 60.806 50.000 0.00 0.00 33.13 2.83
1905 1968 3.463944 CGGTCAGGTAGTGTTCTGTTTT 58.536 45.455 0.00 0.00 33.13 2.43
1906 1969 3.247648 CGGTCAGGTAGTGTTCTGTTTTG 59.752 47.826 0.00 0.00 33.13 2.44
1907 1970 3.564225 GGTCAGGTAGTGTTCTGTTTTGG 59.436 47.826 0.00 0.00 33.13 3.28
1909 1972 2.948979 CAGGTAGTGTTCTGTTTTGGCA 59.051 45.455 0.00 0.00 0.00 4.92
1911 1974 2.034179 GGTAGTGTTCTGTTTTGGCACC 59.966 50.000 0.00 0.00 0.00 5.01
1912 1975 2.143876 AGTGTTCTGTTTTGGCACCT 57.856 45.000 0.00 0.00 0.00 4.00
1913 1976 2.024414 AGTGTTCTGTTTTGGCACCTC 58.976 47.619 0.00 0.00 0.00 3.85
1942 2029 0.895530 TCTCCGTCAGAATTCCGCTT 59.104 50.000 0.65 0.00 0.00 4.68
1997 2090 0.690762 TGGACAAGTTCTACCAGCCC 59.309 55.000 0.00 0.00 0.00 5.19
2212 2305 1.813178 TGTGAGCTCTCTTACCGACAG 59.187 52.381 16.19 0.00 0.00 3.51
2254 2347 2.352034 CTGCTTGCAGCTACTCTTGATG 59.648 50.000 9.78 0.00 42.97 3.07
2263 2356 3.133721 AGCTACTCTTGATGTGGTGATCC 59.866 47.826 0.00 0.00 0.00 3.36
2268 2361 4.019051 ACTCTTGATGTGGTGATCCATTGA 60.019 41.667 0.00 0.00 46.20 2.57
2431 2582 4.442052 GGAATGGTGAGACATCTGAATCGA 60.442 45.833 0.00 0.00 0.00 3.59
2432 2583 3.790152 TGGTGAGACATCTGAATCGAG 57.210 47.619 0.00 0.00 0.00 4.04
2433 2584 3.092301 TGGTGAGACATCTGAATCGAGT 58.908 45.455 0.00 0.00 0.00 4.18
2434 2585 3.511540 TGGTGAGACATCTGAATCGAGTT 59.488 43.478 0.00 0.00 0.00 3.01
2435 2586 4.109050 GGTGAGACATCTGAATCGAGTTC 58.891 47.826 0.00 0.00 37.35 3.01
2436 2587 4.109050 GTGAGACATCTGAATCGAGTTCC 58.891 47.826 0.00 0.00 35.91 3.62
2437 2588 4.019858 TGAGACATCTGAATCGAGTTCCT 58.980 43.478 0.00 0.00 35.91 3.36
2438 2589 4.142293 TGAGACATCTGAATCGAGTTCCTG 60.142 45.833 0.00 0.00 35.91 3.86
2439 2590 3.131933 AGACATCTGAATCGAGTTCCTGG 59.868 47.826 0.00 0.00 35.91 4.45
2440 2591 2.208431 CATCTGAATCGAGTTCCTGGC 58.792 52.381 0.00 0.00 35.91 4.85
2441 2592 0.173481 TCTGAATCGAGTTCCTGGCG 59.827 55.000 0.00 0.00 35.91 5.69
2442 2593 0.173481 CTGAATCGAGTTCCTGGCGA 59.827 55.000 0.00 0.00 35.91 5.54
2443 2594 0.606096 TGAATCGAGTTCCTGGCGAA 59.394 50.000 0.00 0.00 37.60 4.70
2444 2595 1.281899 GAATCGAGTTCCTGGCGAAG 58.718 55.000 0.00 0.00 37.60 3.79
2611 2771 1.270465 TGAGCTGATGGTGTGACTGTG 60.270 52.381 0.00 0.00 0.00 3.66
2636 2796 1.311859 CACACTGCTTCTGCCTTTGA 58.688 50.000 0.00 0.00 38.71 2.69
2648 2808 3.006110 TCTGCCTTTGATTCCTGCAAAAG 59.994 43.478 0.24 0.24 35.09 2.27
2654 2814 0.171231 GATTCCTGCAAAAGCCCGAC 59.829 55.000 0.00 0.00 0.00 4.79
2687 2847 3.626680 CTGACACGATCGCCACGGT 62.627 63.158 16.60 5.85 34.93 4.83
2697 2857 2.048597 GCCACGGTGATGACGACA 60.049 61.111 10.28 0.00 34.93 4.35
2736 2896 0.547712 AAAGTCTCCAGCCCTGCCTA 60.548 55.000 0.00 0.00 0.00 3.93
2743 2903 1.484444 CCAGCCCTGCCTATCCCTAC 61.484 65.000 0.00 0.00 0.00 3.18
3009 3175 2.815945 CCGGCCTCCTGCATCATCT 61.816 63.158 0.00 0.00 43.89 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 0.242286 TCTCACTCTGCAGAAGACGC 59.758 55.000 18.85 0.00 0.00 5.19
61 62 1.832883 TCTCCTGTCTCTCACTCTGC 58.167 55.000 0.00 0.00 0.00 4.26
74 75 1.675415 GGAAGACAGCTGCTTCTCCTG 60.675 57.143 31.50 6.56 41.11 3.86
141 142 3.246112 ACCAGGCGCCCTTACACA 61.246 61.111 26.15 0.00 0.00 3.72
315 335 2.570284 TTCTTCGCCCACGCAGAGA 61.570 57.895 0.00 0.00 42.42 3.10
316 336 2.048222 TTCTTCGCCCACGCAGAG 60.048 61.111 0.00 0.00 42.42 3.35
366 386 0.321653 CCTGAAGAAACACGAGGGGG 60.322 60.000 0.00 0.00 0.00 5.40
373 393 1.578206 GCCCTCGCCTGAAGAAACAC 61.578 60.000 0.00 0.00 0.00 3.32
481 502 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
503 524 3.078305 AGAAGAAAGAGGGAGGAGGAAGA 59.922 47.826 0.00 0.00 0.00 2.87
547 578 5.542779 TGATCTTCTCATGCATGATCTGAG 58.457 41.667 28.81 21.33 38.18 3.35
611 648 4.611310 CGAATCGCCGGAGAAGTATATA 57.389 45.455 13.28 0.00 0.00 0.86
612 649 3.489180 CGAATCGCCGGAGAAGTATAT 57.511 47.619 13.28 0.00 0.00 0.86
613 650 2.983402 CGAATCGCCGGAGAAGTATA 57.017 50.000 13.28 0.00 0.00 1.47
614 651 3.867723 CGAATCGCCGGAGAAGTAT 57.132 52.632 13.28 0.00 0.00 2.12
637 674 1.756561 TCGATCACGATCCCAGCCA 60.757 57.895 1.50 0.00 43.81 4.75
671 724 1.327460 GCTAGCGCACGAATCAAATCA 59.673 47.619 11.47 0.00 35.78 2.57
721 774 7.712205 ACCAAAGAACAAAGAAGAAAATGGATG 59.288 33.333 0.00 0.00 0.00 3.51
729 785 6.210584 ACCAAAGACCAAAGAACAAAGAAGAA 59.789 34.615 0.00 0.00 0.00 2.52
732 788 5.337169 CCACCAAAGACCAAAGAACAAAGAA 60.337 40.000 0.00 0.00 0.00 2.52
733 789 4.159506 CCACCAAAGACCAAAGAACAAAGA 59.840 41.667 0.00 0.00 0.00 2.52
734 790 4.432712 CCACCAAAGACCAAAGAACAAAG 58.567 43.478 0.00 0.00 0.00 2.77
735 791 3.368948 GCCACCAAAGACCAAAGAACAAA 60.369 43.478 0.00 0.00 0.00 2.83
736 792 2.167487 GCCACCAAAGACCAAAGAACAA 59.833 45.455 0.00 0.00 0.00 2.83
737 793 1.754226 GCCACCAAAGACCAAAGAACA 59.246 47.619 0.00 0.00 0.00 3.18
738 794 1.754226 TGCCACCAAAGACCAAAGAAC 59.246 47.619 0.00 0.00 0.00 3.01
745 801 0.895100 TCAGCATGCCACCAAAGACC 60.895 55.000 15.66 0.00 34.76 3.85
746 802 0.242017 GTCAGCATGCCACCAAAGAC 59.758 55.000 15.66 7.64 34.76 3.01
838 895 7.162082 AGCGGACCAAAATATAATCTTAGGAG 58.838 38.462 0.00 0.00 0.00 3.69
840 897 7.162082 AGAGCGGACCAAAATATAATCTTAGG 58.838 38.462 0.00 0.00 0.00 2.69
948 1008 4.732065 TGGGAAGAAAAGGGAAAACGTAT 58.268 39.130 0.00 0.00 0.00 3.06
949 1009 4.167652 TGGGAAGAAAAGGGAAAACGTA 57.832 40.909 0.00 0.00 0.00 3.57
983 1043 5.381174 TCATCTGAAGATTGCAAGTTTGG 57.619 39.130 4.94 0.00 31.21 3.28
1009 1072 2.573369 CAATGAGATCTTGGAGGGCAG 58.427 52.381 0.00 0.00 0.00 4.85
1130 1193 0.388649 GTCGTGTGCTTCATCGTCCT 60.389 55.000 0.00 0.00 0.00 3.85
1483 1546 4.631740 TCCCGCTCCTGGTCCACA 62.632 66.667 0.00 0.00 0.00 4.17
1518 1581 4.394712 AGAACCAGAAGGCGGCGG 62.395 66.667 9.78 0.34 39.06 6.13
1621 1684 2.299013 TGACGGAGCAGTCAAATGTACT 59.701 45.455 7.13 0.00 46.81 2.73
1866 1929 1.963338 GCTGGCGATGGGTATCTGC 60.963 63.158 0.00 0.00 34.40 4.26
1899 1962 2.260844 TCAGAGAGGTGCCAAAACAG 57.739 50.000 0.00 0.00 0.00 3.16
1900 1963 2.092429 ACTTCAGAGAGGTGCCAAAACA 60.092 45.455 0.00 0.00 0.00 2.83
1901 1964 2.576615 ACTTCAGAGAGGTGCCAAAAC 58.423 47.619 0.00 0.00 0.00 2.43
1903 1966 3.117888 AGAAACTTCAGAGAGGTGCCAAA 60.118 43.478 0.00 0.00 0.00 3.28
1904 1967 2.439507 AGAAACTTCAGAGAGGTGCCAA 59.560 45.455 0.00 0.00 0.00 4.52
1905 1968 2.037772 GAGAAACTTCAGAGAGGTGCCA 59.962 50.000 0.00 0.00 0.00 4.92
1906 1969 2.614229 GGAGAAACTTCAGAGAGGTGCC 60.614 54.545 0.00 0.00 0.00 5.01
1907 1970 2.694213 GGAGAAACTTCAGAGAGGTGC 58.306 52.381 0.00 0.00 0.00 5.01
1909 1972 2.559231 GACGGAGAAACTTCAGAGAGGT 59.441 50.000 0.00 0.00 0.00 3.85
1911 1974 3.504134 TCTGACGGAGAAACTTCAGAGAG 59.496 47.826 0.00 0.00 39.62 3.20
1912 1975 3.487372 TCTGACGGAGAAACTTCAGAGA 58.513 45.455 0.00 0.00 39.62 3.10
1913 1976 3.924918 TCTGACGGAGAAACTTCAGAG 57.075 47.619 0.00 0.00 39.62 3.35
1942 2029 2.505982 GAGGAGGCGGCATTAGCA 59.494 61.111 13.08 0.00 44.61 3.49
1997 2090 2.357517 ACGTGCCGGCTCTTCTTG 60.358 61.111 29.70 13.20 0.00 3.02
2102 2195 1.961277 CACCGCCAAGTCCACAGTC 60.961 63.158 0.00 0.00 0.00 3.51
2105 2198 2.425592 CTCACCGCCAAGTCCACA 59.574 61.111 0.00 0.00 0.00 4.17
2178 2271 0.036010 CTCACAAGAACCGGGCATCT 60.036 55.000 6.32 3.27 0.00 2.90
2374 2478 7.844779 AGACTCCCCTCAAATTATCAAGTACTA 59.155 37.037 0.00 0.00 0.00 1.82
2378 2482 5.749462 CAGACTCCCCTCAAATTATCAAGT 58.251 41.667 0.00 0.00 0.00 3.16
2379 2483 4.578105 GCAGACTCCCCTCAAATTATCAAG 59.422 45.833 0.00 0.00 0.00 3.02
2385 2489 2.026449 CAGAGCAGACTCCCCTCAAATT 60.026 50.000 0.00 0.00 44.65 1.82
2386 2490 1.558756 CAGAGCAGACTCCCCTCAAAT 59.441 52.381 0.00 0.00 44.65 2.32
2431 2582 0.886490 CTTGTGCTTCGCCAGGAACT 60.886 55.000 0.00 0.00 43.88 3.01
2432 2583 0.884704 TCTTGTGCTTCGCCAGGAAC 60.885 55.000 0.00 0.00 0.00 3.62
2433 2584 0.884704 GTCTTGTGCTTCGCCAGGAA 60.885 55.000 0.00 0.00 0.00 3.36
2434 2585 1.301716 GTCTTGTGCTTCGCCAGGA 60.302 57.895 0.00 0.00 0.00 3.86
2435 2586 2.328099 GGTCTTGTGCTTCGCCAGG 61.328 63.158 0.00 0.00 0.00 4.45
2436 2587 1.165907 TTGGTCTTGTGCTTCGCCAG 61.166 55.000 0.00 0.00 0.00 4.85
2437 2588 0.537143 ATTGGTCTTGTGCTTCGCCA 60.537 50.000 0.00 0.00 0.00 5.69
2438 2589 0.109597 CATTGGTCTTGTGCTTCGCC 60.110 55.000 0.00 0.00 0.00 5.54
2439 2590 0.593128 ACATTGGTCTTGTGCTTCGC 59.407 50.000 0.00 0.00 0.00 4.70
2440 2591 1.603802 ACACATTGGTCTTGTGCTTCG 59.396 47.619 3.85 0.00 46.65 3.79
2441 2592 2.358898 ACACACATTGGTCTTGTGCTTC 59.641 45.455 3.85 0.00 46.65 3.86
2442 2593 2.099592 CACACACATTGGTCTTGTGCTT 59.900 45.455 3.85 0.00 46.65 3.91
2443 2594 1.677576 CACACACATTGGTCTTGTGCT 59.322 47.619 3.85 0.00 46.65 4.40
2444 2595 2.124011 CACACACATTGGTCTTGTGC 57.876 50.000 3.85 0.00 46.65 4.57
2446 2597 1.677576 CTGCACACACATTGGTCTTGT 59.322 47.619 0.00 0.00 0.00 3.16
2447 2598 1.948834 TCTGCACACACATTGGTCTTG 59.051 47.619 0.00 0.00 0.00 3.02
2552 2712 3.255642 TCAGTTAAGAGGCCATGTTTTGC 59.744 43.478 5.01 0.00 0.00 3.68
2553 2713 5.051891 CTCAGTTAAGAGGCCATGTTTTG 57.948 43.478 5.01 0.00 31.94 2.44
2601 2761 2.203195 TGGGCTGCACAGTCACAC 60.203 61.111 0.00 0.00 33.98 3.82
2620 2780 2.165998 GGAATCAAAGGCAGAAGCAGT 58.834 47.619 0.00 0.00 44.61 4.40
2666 2826 1.138883 GTGGCGATCGTGTCAGCTA 59.861 57.895 17.81 0.00 0.00 3.32
2687 2847 1.731613 GCCGTCGTTGTCGTCATCA 60.732 57.895 0.00 0.00 38.33 3.07
2697 2857 4.508128 ATCATCGGCGCCGTCGTT 62.508 61.111 44.16 28.16 40.74 3.85
2736 2896 2.355986 TGACAAGCGCGGTAGGGAT 61.356 57.895 12.91 0.00 0.00 3.85
2910 3076 2.051345 CAAGAACGCCAACCGCAC 60.051 61.111 0.00 0.00 41.76 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.