Multiple sequence alignment - TraesCS3D01G160400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G160400 chr3D 100.000 3765 0 0 1 3765 131240414 131244178 0.000000e+00 6953.0
1 TraesCS3D01G160400 chr3D 94.269 506 28 1 1 506 418843533 418844037 0.000000e+00 773.0
2 TraesCS3D01G160400 chr3D 75.928 781 166 19 1159 1928 130974537 130975306 7.630000e-102 381.0
3 TraesCS3D01G160400 chr3B 91.817 2273 127 28 506 2757 187575156 187577390 0.000000e+00 3112.0
4 TraesCS3D01G160400 chr3B 92.390 1025 60 6 691 1704 187552179 187553196 0.000000e+00 1445.0
5 TraesCS3D01G160400 chr3B 82.317 656 88 18 2891 3539 187577494 187578128 9.200000e-151 544.0
6 TraesCS3D01G160400 chr3B 86.041 437 30 9 506 935 187555338 187555750 1.240000e-119 440.0
7 TraesCS3D01G160400 chr3B 75.641 780 170 18 1159 1928 187447950 187448719 1.650000e-98 370.0
8 TraesCS3D01G160400 chr3B 91.200 125 10 1 506 629 187551605 187551729 6.470000e-38 169.0
9 TraesCS3D01G160400 chr3A 95.425 1705 67 6 985 2683 143533070 143534769 0.000000e+00 2706.0
10 TraesCS3D01G160400 chr3A 75.619 808 170 23 1133 1928 143017530 143018322 3.550000e-100 375.0
11 TraesCS3D01G160400 chr3A 94.475 181 6 3 2728 2904 143534974 143535154 3.700000e-70 276.0
12 TraesCS3D01G160400 chr3A 82.712 295 31 8 506 786 143532782 143533070 1.040000e-60 244.0
13 TraesCS3D01G160400 chr3A 80.000 250 28 12 2891 3122 143535167 143535412 8.370000e-37 165.0
14 TraesCS3D01G160400 chr5D 99.213 508 4 0 1 508 310028002 310027495 0.000000e+00 917.0
15 TraesCS3D01G160400 chr5D 99.209 506 4 0 1 506 45990557 45990052 0.000000e+00 913.0
16 TraesCS3D01G160400 chr1D 98.419 506 8 0 1 506 98923813 98924318 0.000000e+00 891.0
17 TraesCS3D01G160400 chr1D 93.713 509 29 3 1 508 361851285 361851791 0.000000e+00 760.0
18 TraesCS3D01G160400 chr1D 82.803 849 122 16 1159 1989 236856507 236857349 0.000000e+00 737.0
19 TraesCS3D01G160400 chr1D 80.383 627 101 13 2051 2661 236857471 236858091 1.230000e-124 457.0
20 TraesCS3D01G160400 chr1D 82.828 99 13 4 552 648 450011359 450011455 6.700000e-13 86.1
21 TraesCS3D01G160400 chr4D 97.826 506 11 0 1 506 433960620 433961125 0.000000e+00 874.0
22 TraesCS3D01G160400 chr6D 95.050 505 24 1 2 506 346710485 346710988 0.000000e+00 793.0
23 TraesCS3D01G160400 chr6D 94.851 505 25 1 2 506 455487789 455488292 0.000000e+00 787.0
24 TraesCS3D01G160400 chr5A 93.688 507 29 3 1 506 670091991 670091487 0.000000e+00 756.0
25 TraesCS3D01G160400 chr1A 80.769 624 99 11 2059 2667 308805498 308804881 5.690000e-128 468.0
26 TraesCS3D01G160400 chr1B 80.511 626 102 9 2051 2661 342323555 342324175 2.650000e-126 462.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G160400 chr3D 131240414 131244178 3764 False 6953.000000 6953 100.000 1 3765 1 chr3D.!!$F2 3764
1 TraesCS3D01G160400 chr3D 418843533 418844037 504 False 773.000000 773 94.269 1 506 1 chr3D.!!$F3 505
2 TraesCS3D01G160400 chr3D 130974537 130975306 769 False 381.000000 381 75.928 1159 1928 1 chr3D.!!$F1 769
3 TraesCS3D01G160400 chr3B 187575156 187578128 2972 False 1828.000000 3112 87.067 506 3539 2 chr3B.!!$F3 3033
4 TraesCS3D01G160400 chr3B 187551605 187555750 4145 False 684.666667 1445 89.877 506 1704 3 chr3B.!!$F2 1198
5 TraesCS3D01G160400 chr3B 187447950 187448719 769 False 370.000000 370 75.641 1159 1928 1 chr3B.!!$F1 769
6 TraesCS3D01G160400 chr3A 143532782 143535412 2630 False 847.750000 2706 88.153 506 3122 4 chr3A.!!$F2 2616
7 TraesCS3D01G160400 chr3A 143017530 143018322 792 False 375.000000 375 75.619 1133 1928 1 chr3A.!!$F1 795
8 TraesCS3D01G160400 chr5D 310027495 310028002 507 True 917.000000 917 99.213 1 508 1 chr5D.!!$R2 507
9 TraesCS3D01G160400 chr5D 45990052 45990557 505 True 913.000000 913 99.209 1 506 1 chr5D.!!$R1 505
10 TraesCS3D01G160400 chr1D 98923813 98924318 505 False 891.000000 891 98.419 1 506 1 chr1D.!!$F1 505
11 TraesCS3D01G160400 chr1D 361851285 361851791 506 False 760.000000 760 93.713 1 508 1 chr1D.!!$F2 507
12 TraesCS3D01G160400 chr1D 236856507 236858091 1584 False 597.000000 737 81.593 1159 2661 2 chr1D.!!$F4 1502
13 TraesCS3D01G160400 chr4D 433960620 433961125 505 False 874.000000 874 97.826 1 506 1 chr4D.!!$F1 505
14 TraesCS3D01G160400 chr6D 346710485 346710988 503 False 793.000000 793 95.050 2 506 1 chr6D.!!$F1 504
15 TraesCS3D01G160400 chr6D 455487789 455488292 503 False 787.000000 787 94.851 2 506 1 chr6D.!!$F2 504
16 TraesCS3D01G160400 chr5A 670091487 670091991 504 True 756.000000 756 93.688 1 506 1 chr5A.!!$R1 505
17 TraesCS3D01G160400 chr1A 308804881 308805498 617 True 468.000000 468 80.769 2059 2667 1 chr1A.!!$R1 608
18 TraesCS3D01G160400 chr1B 342323555 342324175 620 False 462.000000 462 80.511 2051 2661 1 chr1B.!!$F1 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 1297 0.035820 GACATACCCCCACAGCGAAA 60.036 55.0 0.00 0.00 0.00 3.46 F
931 1351 0.036105 TGGATTCGCTGCACACATCT 60.036 50.0 0.00 0.00 0.00 2.90 F
2242 3590 0.251922 ACTACCTCAAGGCCGTGGTA 60.252 55.0 19.08 16.63 39.32 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2296 3645 0.024619 GTATCTCGGCGTCGTTTTGC 59.975 55.000 10.18 0.0 37.69 3.68 R
2695 4072 1.062587 CGTTTCTTCTTGCGGCATAGG 59.937 52.381 2.28 0.0 0.00 2.57 R
3662 5899 0.039978 CACGCTATAGCCGTCAGAGG 60.040 60.000 19.00 4.9 37.91 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 3.373439 GCAGTCAGTAATGAGAAAGCTGG 59.627 47.826 9.04 0.00 0.00 4.85
289 290 6.891908 AGTGTATAGAAATGGGTTCTTTGCAT 59.108 34.615 0.00 0.00 44.64 3.96
547 550 5.172205 GGTTGAGAGGTAGAAGATGAACAC 58.828 45.833 0.00 0.00 0.00 3.32
548 551 5.279506 GGTTGAGAGGTAGAAGATGAACACA 60.280 44.000 0.00 0.00 0.00 3.72
593 602 6.479884 AGAAGGCATCTACATAATTGGATCC 58.520 40.000 4.20 4.20 36.32 3.36
606 615 1.599240 GGATCCGCATCTGAAGGCC 60.599 63.158 0.00 0.00 0.00 5.19
612 622 0.597568 CGCATCTGAAGGCCAAAACA 59.402 50.000 5.01 0.00 0.00 2.83
616 626 4.067192 GCATCTGAAGGCCAAAACAATTT 58.933 39.130 5.01 0.00 0.00 1.82
648 934 4.977741 AAATTCATTTTCAGCGCACTTG 57.022 36.364 11.47 0.00 0.00 3.16
655 941 5.411361 TCATTTTCAGCGCACTTGTATTACT 59.589 36.000 11.47 0.00 0.00 2.24
660 946 6.198650 TCAGCGCACTTGTATTACTACTAA 57.801 37.500 11.47 0.00 0.00 2.24
668 954 7.683945 GCACTTGTATTACTACTAACCTCTCCC 60.684 44.444 0.00 0.00 0.00 4.30
744 1154 2.384382 CATTTCACTCAACACGGCAAC 58.616 47.619 0.00 0.00 0.00 4.17
771 1183 1.217882 CATATTTCCGTGGACGCCTC 58.782 55.000 0.00 0.00 38.18 4.70
819 1237 0.392193 CCACCACTCAGCAGATCCAC 60.392 60.000 0.00 0.00 0.00 4.02
879 1297 0.035820 GACATACCCCCACAGCGAAA 60.036 55.000 0.00 0.00 0.00 3.46
880 1298 0.402504 ACATACCCCCACAGCGAAAA 59.597 50.000 0.00 0.00 0.00 2.29
881 1299 1.202952 ACATACCCCCACAGCGAAAAA 60.203 47.619 0.00 0.00 0.00 1.94
927 1347 1.199789 TGAAATGGATTCGCTGCACAC 59.800 47.619 0.00 0.00 41.18 3.82
928 1348 1.199789 GAAATGGATTCGCTGCACACA 59.800 47.619 0.00 0.00 0.00 3.72
929 1349 1.466856 AATGGATTCGCTGCACACAT 58.533 45.000 0.00 0.00 0.00 3.21
930 1350 1.019673 ATGGATTCGCTGCACACATC 58.980 50.000 0.00 0.00 0.00 3.06
931 1351 0.036105 TGGATTCGCTGCACACATCT 60.036 50.000 0.00 0.00 0.00 2.90
932 1352 0.376152 GGATTCGCTGCACACATCTG 59.624 55.000 0.00 0.00 0.00 2.90
964 1384 0.539986 GTAATCGTGCCCCAAGGAGA 59.460 55.000 0.00 0.00 33.47 3.71
1004 1431 2.946086 GCGTTACGAGTACGGCGG 60.946 66.667 13.24 0.00 44.46 6.13
1058 1492 4.443266 GCCGTCTCGCCTCTTGCT 62.443 66.667 0.00 0.00 38.05 3.91
1095 1529 1.007154 GCCTTCGCCGTATCTCTCC 60.007 63.158 0.00 0.00 0.00 3.71
1989 2766 1.139058 AGGCCATCATCTTGGTACGTC 59.861 52.381 5.01 0.00 39.11 4.34
2009 3017 4.046462 GTCTTTATTATGACGCCGTGCTA 58.954 43.478 0.00 0.00 0.00 3.49
2011 3019 5.860182 GTCTTTATTATGACGCCGTGCTATA 59.140 40.000 0.00 0.00 0.00 1.31
2210 3558 1.218316 GTCATCACCGAGGACCACC 59.782 63.158 0.00 0.00 37.39 4.61
2242 3590 0.251922 ACTACCTCAAGGCCGTGGTA 60.252 55.000 19.08 16.63 39.32 3.25
2683 4060 8.542497 TTCGTTAGATAAACTTGTTGCTATGT 57.458 30.769 0.00 0.00 35.81 2.29
2693 4070 7.764695 AACTTGTTGCTATGTTGGTTTTTAC 57.235 32.000 0.00 0.00 0.00 2.01
2694 4071 7.107639 ACTTGTTGCTATGTTGGTTTTTACT 57.892 32.000 0.00 0.00 0.00 2.24
2695 4072 7.200455 ACTTGTTGCTATGTTGGTTTTTACTC 58.800 34.615 0.00 0.00 0.00 2.59
2696 4073 6.079424 TGTTGCTATGTTGGTTTTTACTCC 57.921 37.500 0.00 0.00 0.00 3.85
2697 4074 5.830991 TGTTGCTATGTTGGTTTTTACTCCT 59.169 36.000 0.00 0.00 0.00 3.69
2700 4077 7.624360 TGCTATGTTGGTTTTTACTCCTATG 57.376 36.000 0.00 0.00 0.00 2.23
2718 4265 1.964373 GCCGCAAGAAGAAACGGGA 60.964 57.895 2.17 0.00 45.72 5.14
2720 4267 1.497722 CGCAAGAAGAAACGGGAGC 59.502 57.895 0.00 0.00 43.02 4.70
2723 4270 2.003301 GCAAGAAGAAACGGGAGCTAG 58.997 52.381 0.00 0.00 0.00 3.42
2725 4272 2.996621 CAAGAAGAAACGGGAGCTAGTG 59.003 50.000 0.00 0.00 0.00 2.74
2805 4353 7.015584 TGCATGGATCTCAGTATTGTAGTGTAT 59.984 37.037 0.00 0.00 0.00 2.29
2833 4381 4.884164 GGGTTTCATGGAGAATTGAGGTAG 59.116 45.833 0.00 0.00 35.83 3.18
2863 4740 0.401738 TCAAACTGGAGGCAGAAGGG 59.598 55.000 0.00 0.00 0.00 3.95
2886 4765 2.192263 AGAGCAAAGAGAAGGTAGGGG 58.808 52.381 0.00 0.00 0.00 4.79
2889 4768 2.507471 AGCAAAGAGAAGGTAGGGGATG 59.493 50.000 0.00 0.00 0.00 3.51
2930 5132 1.081892 CCCATCAGAACAGTGCTTCG 58.918 55.000 0.00 0.00 0.00 3.79
2936 5138 2.228103 TCAGAACAGTGCTTCGACGTAT 59.772 45.455 0.00 0.00 0.00 3.06
2980 5196 1.302192 GGCCCAACGCTCACACTTA 60.302 57.895 0.00 0.00 37.74 2.24
2983 5199 1.588674 CCCAACGCTCACACTTACAA 58.411 50.000 0.00 0.00 0.00 2.41
2985 5201 1.531149 CCAACGCTCACACTTACAAGG 59.469 52.381 0.00 0.00 0.00 3.61
3034 5250 7.458038 TTTTTGCAAAATCTCGAAACTAACC 57.542 32.000 24.39 0.00 0.00 2.85
3035 5251 4.759516 TGCAAAATCTCGAAACTAACCC 57.240 40.909 0.00 0.00 0.00 4.11
3037 5253 4.215399 TGCAAAATCTCGAAACTAACCCTG 59.785 41.667 0.00 0.00 0.00 4.45
3039 5255 5.278315 GCAAAATCTCGAAACTAACCCTGTT 60.278 40.000 0.00 0.00 0.00 3.16
3041 5257 5.941948 AATCTCGAAACTAACCCTGTTTG 57.058 39.130 0.00 0.00 37.70 2.93
3042 5258 4.675976 TCTCGAAACTAACCCTGTTTGA 57.324 40.909 0.00 0.00 37.70 2.69
3071 5288 9.537192 AAAAATCAATTATATCACCTCGTCGTA 57.463 29.630 0.00 0.00 0.00 3.43
3113 5330 1.014044 TCTTCATTGCAGTCGCGGAC 61.014 55.000 6.13 3.09 42.97 4.79
3129 5346 3.722082 CGCGGACGAAGAGATTTTCTTTG 60.722 47.826 0.00 3.25 46.12 2.77
3136 5353 4.467735 GAAGAGATTTTCTTTGTGACGGC 58.532 43.478 0.00 0.00 46.12 5.68
3137 5354 2.814336 AGAGATTTTCTTTGTGACGGCC 59.186 45.455 0.00 0.00 29.61 6.13
3138 5355 2.814336 GAGATTTTCTTTGTGACGGCCT 59.186 45.455 0.00 0.00 0.00 5.19
3143 5360 0.534203 TCTTTGTGACGGCCTTGGAC 60.534 55.000 0.00 0.00 0.00 4.02
3158 5376 0.322456 TGGACAAATGGGAGCCTTCG 60.322 55.000 0.00 0.00 0.00 3.79
3188 5424 2.731976 GAGTTGACTTTGTCACTAGCCG 59.268 50.000 0.00 0.00 42.60 5.52
3210 5446 3.304586 CGAAGAGCTCGTGAGACAG 57.695 57.895 6.97 0.00 42.89 3.51
3219 5455 3.386237 GTGAGACAGCCCCGCTCT 61.386 66.667 0.00 0.00 36.40 4.09
3225 5461 2.759973 CAGCCCCGCTCTGACCTA 60.760 66.667 0.00 0.00 36.40 3.08
3233 5469 1.471676 CCGCTCTGACCTAACCATCAC 60.472 57.143 0.00 0.00 0.00 3.06
3240 5476 1.198759 ACCTAACCATCACGGCCACT 61.199 55.000 2.24 0.00 39.03 4.00
3241 5477 0.744414 CCTAACCATCACGGCCACTG 60.744 60.000 2.24 0.00 39.03 3.66
3254 5490 3.449227 CACTGCCCGCCGACTAGA 61.449 66.667 0.00 0.00 0.00 2.43
3255 5491 3.450115 ACTGCCCGCCGACTAGAC 61.450 66.667 0.00 0.00 0.00 2.59
3259 5495 2.728817 CCCGCCGACTAGACCATC 59.271 66.667 0.00 0.00 0.00 3.51
3261 5497 2.728817 CGCCGACTAGACCATCCC 59.271 66.667 0.00 0.00 0.00 3.85
3262 5498 2.857744 CGCCGACTAGACCATCCCC 61.858 68.421 0.00 0.00 0.00 4.81
3269 5505 0.768609 CTAGACCATCCCCCTTCCCC 60.769 65.000 0.00 0.00 0.00 4.81
3307 5543 2.915137 GGCCCTAGGAGAGCGAGG 60.915 72.222 11.48 0.00 0.00 4.63
3321 5557 2.056223 CGAGGGACCTCCGCCTTTA 61.056 63.158 12.54 0.00 39.77 1.85
3322 5558 1.521141 GAGGGACCTCCGCCTTTAC 59.479 63.158 7.13 0.00 41.52 2.01
3323 5559 2.186125 GGGACCTCCGCCTTTACG 59.814 66.667 0.00 0.00 36.71 3.18
3324 5560 2.510918 GGACCTCCGCCTTTACGC 60.511 66.667 0.00 0.00 0.00 4.42
3325 5561 2.510918 GACCTCCGCCTTTACGCC 60.511 66.667 0.00 0.00 0.00 5.68
3326 5562 3.001406 ACCTCCGCCTTTACGCCT 61.001 61.111 0.00 0.00 0.00 5.52
3327 5563 2.511600 CCTCCGCCTTTACGCCTG 60.512 66.667 0.00 0.00 0.00 4.85
3328 5564 3.195698 CTCCGCCTTTACGCCTGC 61.196 66.667 0.00 0.00 0.00 4.85
3351 5588 1.402456 CGTAGTCGTCTTCACCTTGGG 60.402 57.143 0.00 0.00 0.00 4.12
3359 5596 0.451783 CTTCACCTTGGGCGCAATAC 59.548 55.000 17.30 0.00 0.00 1.89
3362 5599 1.378514 ACCTTGGGCGCAATACCAG 60.379 57.895 17.30 4.50 38.16 4.00
3367 5604 2.902343 GGCGCAATACCAGGCCTC 60.902 66.667 10.83 0.00 42.29 4.70
3381 5618 4.154347 CCTCTCCTGGTGCGGCTC 62.154 72.222 0.00 0.00 0.00 4.70
3402 5639 3.403558 GGCCACTCCCTGGTCCTC 61.404 72.222 0.00 0.00 42.99 3.71
3405 5642 1.910722 CCACTCCCTGGTCCTCATG 59.089 63.158 0.00 0.00 34.90 3.07
3407 5644 1.997874 ACTCCCTGGTCCTCATGGC 60.998 63.158 0.00 0.00 32.08 4.40
3408 5645 1.997311 CTCCCTGGTCCTCATGGCA 60.997 63.158 0.00 0.00 32.08 4.92
3411 5648 1.565390 CCCTGGTCCTCATGGCAAGA 61.565 60.000 0.00 0.00 0.00 3.02
3420 5657 0.391130 TCATGGCAAGACACTACGGC 60.391 55.000 0.00 0.00 0.00 5.68
3422 5659 0.036164 ATGGCAAGACACTACGGCAA 59.964 50.000 0.00 0.00 37.48 4.52
3423 5660 0.179043 TGGCAAGACACTACGGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
3424 5661 0.517316 GGCAAGACACTACGGCAAAG 59.483 55.000 0.00 0.00 0.00 2.77
3425 5662 0.110192 GCAAGACACTACGGCAAAGC 60.110 55.000 0.00 0.00 0.00 3.51
3426 5663 1.225855 CAAGACACTACGGCAAAGCA 58.774 50.000 0.00 0.00 0.00 3.91
3427 5664 1.806542 CAAGACACTACGGCAAAGCAT 59.193 47.619 0.00 0.00 0.00 3.79
3428 5665 1.442769 AGACACTACGGCAAAGCATG 58.557 50.000 0.00 0.00 0.00 4.06
3429 5666 1.001974 AGACACTACGGCAAAGCATGA 59.998 47.619 0.00 0.00 0.00 3.07
3430 5667 1.394917 GACACTACGGCAAAGCATGAG 59.605 52.381 0.00 0.00 0.00 2.90
3431 5668 0.097674 CACTACGGCAAAGCATGAGC 59.902 55.000 0.00 0.00 42.56 4.26
3432 5669 0.321564 ACTACGGCAAAGCATGAGCA 60.322 50.000 0.00 0.00 45.49 4.26
3433 5670 0.376152 CTACGGCAAAGCATGAGCAG 59.624 55.000 0.00 0.00 45.49 4.24
3434 5671 1.026182 TACGGCAAAGCATGAGCAGG 61.026 55.000 0.00 0.00 45.49 4.85
3435 5672 2.042259 CGGCAAAGCATGAGCAGGA 61.042 57.895 0.00 0.00 45.49 3.86
3436 5673 1.509923 GGCAAAGCATGAGCAGGAC 59.490 57.895 0.00 0.00 45.49 3.85
3437 5674 1.136147 GCAAAGCATGAGCAGGACG 59.864 57.895 0.00 0.00 45.49 4.79
3445 5682 0.733729 ATGAGCAGGACGTCGTCTAC 59.266 55.000 23.69 13.63 32.47 2.59
3451 5688 1.130749 CAGGACGTCGTCTACTTCTGG 59.869 57.143 23.69 4.95 32.47 3.86
3454 5691 0.892358 ACGTCGTCTACTTCTGGCCA 60.892 55.000 4.71 4.71 0.00 5.36
3458 5695 1.476891 TCGTCTACTTCTGGCCATCAC 59.523 52.381 5.51 0.00 0.00 3.06
3477 5714 0.580578 CCATCGAAGAAGATGCTGCG 59.419 55.000 0.00 0.00 44.86 5.18
3478 5715 0.042361 CATCGAAGAAGATGCTGCGC 60.042 55.000 0.00 0.00 43.58 6.09
3479 5716 1.156645 ATCGAAGAAGATGCTGCGCC 61.157 55.000 4.18 0.00 43.58 6.53
3481 5718 2.817423 GAAGAAGATGCTGCGCCGG 61.817 63.158 4.18 0.00 0.00 6.13
3503 5740 2.677337 TGTGCATGTATCCAATCGTGTG 59.323 45.455 0.00 0.00 0.00 3.82
3504 5741 2.677836 GTGCATGTATCCAATCGTGTGT 59.322 45.455 0.00 0.00 0.00 3.72
3505 5742 2.677337 TGCATGTATCCAATCGTGTGTG 59.323 45.455 0.00 0.00 0.00 3.82
3506 5743 2.539547 GCATGTATCCAATCGTGTGTGC 60.540 50.000 0.00 0.00 0.00 4.57
3539 5776 7.096394 TGCTTAAAGTTTTAAATAGCGCACAAC 60.096 33.333 11.47 0.00 32.73 3.32
3540 5777 7.618547 GCTTAAAGTTTTAAATAGCGCACAACC 60.619 37.037 11.47 0.00 32.73 3.77
3541 5778 4.168922 AGTTTTAAATAGCGCACAACCC 57.831 40.909 11.47 0.00 0.00 4.11
3542 5779 2.904011 TTTAAATAGCGCACAACCCG 57.096 45.000 11.47 0.00 0.00 5.28
3550 5787 4.114997 GCACAACCCGCGGATTGG 62.115 66.667 34.74 23.87 0.00 3.16
3551 5788 2.671619 CACAACCCGCGGATTGGT 60.672 61.111 34.74 18.29 36.06 3.67
3552 5789 1.376166 CACAACCCGCGGATTGGTA 60.376 57.895 34.74 0.00 33.52 3.25
3553 5790 1.376295 ACAACCCGCGGATTGGTAC 60.376 57.895 34.74 0.00 33.52 3.34
3554 5791 2.110352 CAACCCGCGGATTGGTACC 61.110 63.158 30.73 4.43 33.52 3.34
3555 5792 3.333899 AACCCGCGGATTGGTACCC 62.334 63.158 30.73 0.00 33.52 3.69
3556 5793 4.557385 CCCGCGGATTGGTACCCC 62.557 72.222 30.73 2.14 0.00 4.95
3557 5794 3.476419 CCGCGGATTGGTACCCCT 61.476 66.667 24.07 0.00 0.00 4.79
3558 5795 2.135581 CCGCGGATTGGTACCCCTA 61.136 63.158 24.07 0.00 0.00 3.53
3559 5796 1.477685 CCGCGGATTGGTACCCCTAT 61.478 60.000 24.07 0.00 0.00 2.57
3560 5797 0.037605 CGCGGATTGGTACCCCTATC 60.038 60.000 10.07 9.55 40.87 2.08
3561 5798 1.349067 GCGGATTGGTACCCCTATCT 58.651 55.000 10.07 0.00 41.21 1.98
3562 5799 2.532843 GCGGATTGGTACCCCTATCTA 58.467 52.381 10.07 0.00 41.21 1.98
3563 5800 2.233186 GCGGATTGGTACCCCTATCTAC 59.767 54.545 10.07 3.32 41.21 2.59
3564 5801 3.503365 CGGATTGGTACCCCTATCTACA 58.497 50.000 10.07 0.00 41.21 2.74
3565 5802 3.899360 CGGATTGGTACCCCTATCTACAA 59.101 47.826 10.07 0.00 41.21 2.41
3566 5803 4.262335 CGGATTGGTACCCCTATCTACAAC 60.262 50.000 10.07 0.00 41.21 3.32
3567 5804 4.041321 GGATTGGTACCCCTATCTACAACC 59.959 50.000 10.07 0.00 41.21 3.77
3568 5805 2.669781 TGGTACCCCTATCTACAACCG 58.330 52.381 10.07 0.00 0.00 4.44
3569 5806 1.966354 GGTACCCCTATCTACAACCGG 59.034 57.143 0.00 0.00 0.00 5.28
3570 5807 2.424812 GGTACCCCTATCTACAACCGGA 60.425 54.545 9.46 0.00 0.00 5.14
3571 5808 2.789323 ACCCCTATCTACAACCGGAT 57.211 50.000 9.46 0.00 0.00 4.18
3572 5809 2.326428 ACCCCTATCTACAACCGGATG 58.674 52.381 9.46 10.13 0.00 3.51
3573 5810 1.002087 CCCCTATCTACAACCGGATGC 59.998 57.143 9.46 0.00 0.00 3.91
3574 5811 1.336887 CCCTATCTACAACCGGATGCG 60.337 57.143 9.46 0.00 0.00 4.73
3575 5812 1.611977 CCTATCTACAACCGGATGCGA 59.388 52.381 9.46 7.70 0.00 5.10
3576 5813 2.351835 CCTATCTACAACCGGATGCGAG 60.352 54.545 9.46 8.29 0.00 5.03
3577 5814 1.399714 ATCTACAACCGGATGCGAGA 58.600 50.000 9.46 14.02 0.00 4.04
3578 5815 0.738975 TCTACAACCGGATGCGAGAG 59.261 55.000 9.46 2.63 0.00 3.20
3579 5816 0.738975 CTACAACCGGATGCGAGAGA 59.261 55.000 9.46 0.00 0.00 3.10
3580 5817 1.134367 CTACAACCGGATGCGAGAGAA 59.866 52.381 9.46 0.00 0.00 2.87
3581 5818 0.320374 ACAACCGGATGCGAGAGAAA 59.680 50.000 9.46 0.00 0.00 2.52
3582 5819 1.270625 ACAACCGGATGCGAGAGAAAA 60.271 47.619 9.46 0.00 0.00 2.29
3583 5820 2.009774 CAACCGGATGCGAGAGAAAAT 58.990 47.619 9.46 0.00 0.00 1.82
3584 5821 2.403252 ACCGGATGCGAGAGAAAATT 57.597 45.000 9.46 0.00 0.00 1.82
3585 5822 2.711542 ACCGGATGCGAGAGAAAATTT 58.288 42.857 9.46 0.00 0.00 1.82
3586 5823 3.869065 ACCGGATGCGAGAGAAAATTTA 58.131 40.909 9.46 0.00 0.00 1.40
3587 5824 3.621715 ACCGGATGCGAGAGAAAATTTAC 59.378 43.478 9.46 0.00 0.00 2.01
3588 5825 3.621268 CCGGATGCGAGAGAAAATTTACA 59.379 43.478 8.71 0.00 0.00 2.41
3589 5826 4.094294 CCGGATGCGAGAGAAAATTTACAA 59.906 41.667 8.71 0.00 0.00 2.41
3590 5827 5.258622 CGGATGCGAGAGAAAATTTACAAG 58.741 41.667 0.00 0.00 0.00 3.16
3591 5828 5.163854 CGGATGCGAGAGAAAATTTACAAGT 60.164 40.000 0.00 0.00 0.00 3.16
3592 5829 6.612306 GGATGCGAGAGAAAATTTACAAGTT 58.388 36.000 0.00 0.00 0.00 2.66
3593 5830 6.524586 GGATGCGAGAGAAAATTTACAAGTTG 59.475 38.462 0.00 0.00 0.00 3.16
3594 5831 5.212194 TGCGAGAGAAAATTTACAAGTTGC 58.788 37.500 1.81 0.00 0.00 4.17
3595 5832 4.617223 GCGAGAGAAAATTTACAAGTTGCC 59.383 41.667 1.81 0.00 0.00 4.52
3596 5833 4.846137 CGAGAGAAAATTTACAAGTTGCCG 59.154 41.667 1.81 0.00 0.00 5.69
3597 5834 5.560183 CGAGAGAAAATTTACAAGTTGCCGT 60.560 40.000 1.81 0.00 0.00 5.68
3598 5835 5.758924 AGAGAAAATTTACAAGTTGCCGTC 58.241 37.500 1.81 0.00 0.00 4.79
3599 5836 4.533222 AGAAAATTTACAAGTTGCCGTCG 58.467 39.130 1.81 0.00 0.00 5.12
3600 5837 4.273969 AGAAAATTTACAAGTTGCCGTCGA 59.726 37.500 1.81 0.00 0.00 4.20
3601 5838 4.555348 AAATTTACAAGTTGCCGTCGAA 57.445 36.364 1.81 0.00 0.00 3.71
3602 5839 4.555348 AATTTACAAGTTGCCGTCGAAA 57.445 36.364 1.81 0.00 0.00 3.46
3603 5840 4.555348 ATTTACAAGTTGCCGTCGAAAA 57.445 36.364 1.81 0.00 0.00 2.29
3604 5841 4.555348 TTTACAAGTTGCCGTCGAAAAT 57.445 36.364 1.81 0.00 0.00 1.82
3605 5842 4.555348 TTACAAGTTGCCGTCGAAAATT 57.445 36.364 1.81 0.00 0.00 1.82
3606 5843 3.430333 ACAAGTTGCCGTCGAAAATTT 57.570 38.095 1.81 0.00 0.00 1.82
3607 5844 4.555348 ACAAGTTGCCGTCGAAAATTTA 57.445 36.364 1.81 0.00 0.00 1.40
3608 5845 4.533222 ACAAGTTGCCGTCGAAAATTTAG 58.467 39.130 1.81 0.00 0.00 1.85
3609 5846 4.035909 ACAAGTTGCCGTCGAAAATTTAGT 59.964 37.500 1.81 0.00 0.00 2.24
3610 5847 4.141855 AGTTGCCGTCGAAAATTTAGTG 57.858 40.909 0.00 0.00 0.00 2.74
3611 5848 3.562557 AGTTGCCGTCGAAAATTTAGTGT 59.437 39.130 0.00 0.00 0.00 3.55
3612 5849 4.035909 AGTTGCCGTCGAAAATTTAGTGTT 59.964 37.500 0.00 0.00 0.00 3.32
3613 5850 5.236911 AGTTGCCGTCGAAAATTTAGTGTTA 59.763 36.000 0.00 0.00 0.00 2.41
3614 5851 5.670149 TGCCGTCGAAAATTTAGTGTTAA 57.330 34.783 0.00 0.00 0.00 2.01
3615 5852 6.057627 TGCCGTCGAAAATTTAGTGTTAAA 57.942 33.333 0.00 0.00 33.54 1.52
3616 5853 6.670233 TGCCGTCGAAAATTTAGTGTTAAAT 58.330 32.000 0.00 0.00 40.37 1.40
3617 5854 7.804712 TGCCGTCGAAAATTTAGTGTTAAATA 58.195 30.769 0.00 0.00 38.27 1.40
3618 5855 7.958567 TGCCGTCGAAAATTTAGTGTTAAATAG 59.041 33.333 0.00 0.00 38.27 1.73
3619 5856 7.045160 GCCGTCGAAAATTTAGTGTTAAATAGC 60.045 37.037 0.00 0.00 38.27 2.97
3620 5857 7.427318 CCGTCGAAAATTTAGTGTTAAATAGCC 59.573 37.037 0.00 0.00 38.27 3.93
3621 5858 7.958567 CGTCGAAAATTTAGTGTTAAATAGCCA 59.041 33.333 0.00 0.00 38.27 4.75
3622 5859 9.274065 GTCGAAAATTTAGTGTTAAATAGCCAG 57.726 33.333 0.00 0.00 38.27 4.85
3623 5860 7.966204 TCGAAAATTTAGTGTTAAATAGCCAGC 59.034 33.333 0.00 0.00 38.27 4.85
3624 5861 7.220108 CGAAAATTTAGTGTTAAATAGCCAGCC 59.780 37.037 0.00 0.00 38.27 4.85
3625 5862 6.465439 AATTTAGTGTTAAATAGCCAGCCC 57.535 37.500 0.00 0.00 38.27 5.19
3626 5863 4.855298 TTAGTGTTAAATAGCCAGCCCT 57.145 40.909 0.00 0.00 0.00 5.19
3627 5864 3.739401 AGTGTTAAATAGCCAGCCCTT 57.261 42.857 0.00 0.00 0.00 3.95
3628 5865 4.047627 AGTGTTAAATAGCCAGCCCTTT 57.952 40.909 0.00 0.00 0.00 3.11
3629 5866 4.017126 AGTGTTAAATAGCCAGCCCTTTC 58.983 43.478 0.00 0.00 0.00 2.62
3630 5867 3.013921 TGTTAAATAGCCAGCCCTTTCG 58.986 45.455 0.00 0.00 0.00 3.46
3631 5868 3.275999 GTTAAATAGCCAGCCCTTTCGA 58.724 45.455 0.00 0.00 0.00 3.71
3632 5869 1.751437 AAATAGCCAGCCCTTTCGAC 58.249 50.000 0.00 0.00 0.00 4.20
3633 5870 0.107165 AATAGCCAGCCCTTTCGACC 60.107 55.000 0.00 0.00 0.00 4.79
3634 5871 1.984288 ATAGCCAGCCCTTTCGACCC 61.984 60.000 0.00 0.00 0.00 4.46
3636 5873 3.702048 CCAGCCCTTTCGACCCGA 61.702 66.667 0.00 0.00 0.00 5.14
3637 5874 2.345991 CAGCCCTTTCGACCCGAA 59.654 61.111 0.00 0.00 44.28 4.30
3649 5886 4.223320 TCGACCCGAAATATACGTTACC 57.777 45.455 0.00 0.00 31.06 2.85
3650 5887 3.882888 TCGACCCGAAATATACGTTACCT 59.117 43.478 0.00 0.00 31.06 3.08
3651 5888 5.060506 TCGACCCGAAATATACGTTACCTA 58.939 41.667 0.00 0.00 31.06 3.08
3652 5889 5.179368 TCGACCCGAAATATACGTTACCTAG 59.821 44.000 0.00 0.00 31.06 3.02
3653 5890 5.126396 ACCCGAAATATACGTTACCTAGC 57.874 43.478 0.00 0.00 0.00 3.42
3654 5891 4.161333 CCCGAAATATACGTTACCTAGCG 58.839 47.826 0.00 0.00 35.97 4.26
3655 5892 4.161333 CCGAAATATACGTTACCTAGCGG 58.839 47.826 0.00 0.00 34.10 5.52
3656 5893 4.083324 CCGAAATATACGTTACCTAGCGGA 60.083 45.833 0.00 0.00 36.21 5.54
3657 5894 4.848299 CGAAATATACGTTACCTAGCGGAC 59.152 45.833 0.00 0.00 34.10 4.79
3658 5895 5.560760 CGAAATATACGTTACCTAGCGGACA 60.561 44.000 0.00 0.00 34.10 4.02
3659 5896 5.772825 AATATACGTTACCTAGCGGACAA 57.227 39.130 0.00 0.00 34.10 3.18
3660 5897 2.919666 TACGTTACCTAGCGGACAAC 57.080 50.000 0.00 0.00 34.10 3.32
3661 5898 1.251251 ACGTTACCTAGCGGACAACT 58.749 50.000 0.00 0.00 34.10 3.16
3662 5899 1.200948 ACGTTACCTAGCGGACAACTC 59.799 52.381 0.00 0.00 34.10 3.01
3663 5900 1.468736 CGTTACCTAGCGGACAACTCC 60.469 57.143 0.00 0.00 31.19 3.85
3664 5901 1.823610 GTTACCTAGCGGACAACTCCT 59.176 52.381 0.00 0.00 33.79 3.69
3665 5902 1.760192 TACCTAGCGGACAACTCCTC 58.240 55.000 0.00 0.00 33.79 3.71
3666 5903 0.039911 ACCTAGCGGACAACTCCTCT 59.960 55.000 0.00 0.00 35.64 3.69
3667 5904 0.457851 CCTAGCGGACAACTCCTCTG 59.542 60.000 0.00 0.00 33.39 3.35
3668 5905 1.464734 CTAGCGGACAACTCCTCTGA 58.535 55.000 0.00 0.00 33.39 3.27
3669 5906 1.133407 CTAGCGGACAACTCCTCTGAC 59.867 57.143 0.00 0.00 33.39 3.51
3670 5907 1.444553 GCGGACAACTCCTCTGACG 60.445 63.158 0.00 0.00 33.79 4.35
3671 5908 1.213013 CGGACAACTCCTCTGACGG 59.787 63.158 0.00 0.00 33.79 4.79
3672 5909 1.079750 GGACAACTCCTCTGACGGC 60.080 63.158 0.00 0.00 33.07 5.68
3673 5910 1.536943 GGACAACTCCTCTGACGGCT 61.537 60.000 0.00 0.00 33.07 5.52
3674 5911 1.174783 GACAACTCCTCTGACGGCTA 58.825 55.000 0.00 0.00 0.00 3.93
3675 5912 1.751924 GACAACTCCTCTGACGGCTAT 59.248 52.381 0.00 0.00 0.00 2.97
3676 5913 2.950309 GACAACTCCTCTGACGGCTATA 59.050 50.000 0.00 0.00 0.00 1.31
3677 5914 2.952978 ACAACTCCTCTGACGGCTATAG 59.047 50.000 0.00 0.00 0.00 1.31
3678 5915 1.611519 ACTCCTCTGACGGCTATAGC 58.388 55.000 16.78 16.78 41.14 2.97
3679 5916 0.519519 CTCCTCTGACGGCTATAGCG 59.480 60.000 18.30 15.25 43.26 4.26
3680 5917 0.179026 TCCTCTGACGGCTATAGCGT 60.179 55.000 18.30 18.13 43.26 5.07
3681 5918 0.039978 CCTCTGACGGCTATAGCGTG 60.040 60.000 21.40 17.19 43.26 5.34
3682 5919 0.661780 CTCTGACGGCTATAGCGTGC 60.662 60.000 21.40 12.71 43.26 5.34
3683 5920 1.101635 TCTGACGGCTATAGCGTGCT 61.102 55.000 21.40 0.00 43.26 4.40
3684 5921 0.591659 CTGACGGCTATAGCGTGCTA 59.408 55.000 21.40 3.73 43.26 3.49
3685 5922 0.309922 TGACGGCTATAGCGTGCTAC 59.690 55.000 21.40 11.04 43.26 3.58
3686 5923 0.592148 GACGGCTATAGCGTGCTACT 59.408 55.000 21.40 2.51 43.26 2.57
3687 5924 1.001597 GACGGCTATAGCGTGCTACTT 60.002 52.381 21.40 1.83 43.26 2.24
3688 5925 2.224606 ACGGCTATAGCGTGCTACTTA 58.775 47.619 18.30 0.00 43.26 2.24
3689 5926 2.620115 ACGGCTATAGCGTGCTACTTAA 59.380 45.455 18.30 0.00 43.26 1.85
3690 5927 3.067180 ACGGCTATAGCGTGCTACTTAAA 59.933 43.478 18.30 0.00 43.26 1.52
3691 5928 3.669122 CGGCTATAGCGTGCTACTTAAAG 59.331 47.826 18.30 0.00 43.26 1.85
3692 5929 3.429207 GGCTATAGCGTGCTACTTAAAGC 59.571 47.826 18.30 8.21 43.26 3.51
3693 5930 5.031898 GGCTATAGCGTGCTACTTAAAGCA 61.032 45.833 18.30 0.00 45.56 3.91
3694 5931 6.800090 GGCTATAGCGTGCTACTTAAAGCAG 61.800 48.000 18.30 0.00 44.70 4.24
3703 5940 5.908916 GCTACTTAAAGCAGTGGTATAGC 57.091 43.478 0.00 1.45 42.30 2.97
3704 5941 5.602628 GCTACTTAAAGCAGTGGTATAGCT 58.397 41.667 3.20 0.00 42.30 3.32
3705 5942 6.746120 GCTACTTAAAGCAGTGGTATAGCTA 58.254 40.000 0.00 0.00 42.30 3.32
3706 5943 6.641723 GCTACTTAAAGCAGTGGTATAGCTAC 59.358 42.308 0.00 0.48 42.30 3.58
3707 5944 5.915175 ACTTAAAGCAGTGGTATAGCTACC 58.085 41.667 0.00 0.00 46.65 3.18
3716 5953 3.806625 GGTATAGCTACCGTGTTTCCA 57.193 47.619 0.00 0.00 38.23 3.53
3717 5954 3.714391 GGTATAGCTACCGTGTTTCCAG 58.286 50.000 0.00 0.00 38.23 3.86
3718 5955 2.311124 ATAGCTACCGTGTTTCCAGC 57.689 50.000 0.00 0.00 0.00 4.85
3719 5956 0.248289 TAGCTACCGTGTTTCCAGCC 59.752 55.000 0.00 0.00 32.58 4.85
3720 5957 2.388232 GCTACCGTGTTTCCAGCCG 61.388 63.158 0.00 0.00 0.00 5.52
3721 5958 2.357760 TACCGTGTTTCCAGCCGC 60.358 61.111 0.00 0.00 0.00 6.53
3722 5959 3.887335 TACCGTGTTTCCAGCCGCC 62.887 63.158 0.00 0.00 0.00 6.13
3724 5961 3.423154 CGTGTTTCCAGCCGCCTC 61.423 66.667 0.00 0.00 0.00 4.70
3725 5962 2.281484 GTGTTTCCAGCCGCCTCA 60.281 61.111 0.00 0.00 0.00 3.86
3726 5963 2.281484 TGTTTCCAGCCGCCTCAC 60.281 61.111 0.00 0.00 0.00 3.51
3727 5964 3.056328 GTTTCCAGCCGCCTCACC 61.056 66.667 0.00 0.00 0.00 4.02
3728 5965 3.249189 TTTCCAGCCGCCTCACCT 61.249 61.111 0.00 0.00 0.00 4.00
3729 5966 3.551496 TTTCCAGCCGCCTCACCTG 62.551 63.158 0.00 0.00 0.00 4.00
3731 5968 4.463879 CCAGCCGCCTCACCTGAG 62.464 72.222 0.00 0.00 41.71 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
289 290 8.082242 GCCTTTTTAGTAGAAGCAATTCTTTCA 58.918 33.333 0.00 0.00 34.56 2.69
593 602 0.597568 TGTTTTGGCCTTCAGATGCG 59.402 50.000 3.32 0.00 0.00 4.73
606 615 8.661352 AATTTAGGGTCACTCAAATTGTTTTG 57.339 30.769 0.00 0.00 42.98 2.44
612 622 9.710900 GAAAATGAATTTAGGGTCACTCAAATT 57.289 29.630 0.00 0.00 34.24 1.82
616 626 6.071952 GCTGAAAATGAATTTAGGGTCACTCA 60.072 38.462 0.00 0.00 0.00 3.41
686 973 3.125316 TGAGTGGTTACTTGTTACGTGC 58.875 45.455 0.00 0.00 37.25 5.34
744 1154 0.376852 CACGGAAATATGTGGTGGCG 59.623 55.000 0.00 0.00 32.47 5.69
771 1183 3.249799 TGAAACAAGTAACCATGCACTCG 59.750 43.478 0.00 0.00 0.00 4.18
819 1237 1.195448 CTGCAGCGTGTTAAAGGTCAG 59.805 52.381 0.00 0.00 0.00 3.51
823 1241 4.847255 GCTGCAGCGTGTTAAAGG 57.153 55.556 25.23 0.00 0.00 3.11
881 1299 5.721232 AGATTCGTCGTGACTCCTATTTTT 58.279 37.500 0.00 0.00 0.00 1.94
882 1300 5.326200 AGATTCGTCGTGACTCCTATTTT 57.674 39.130 0.00 0.00 0.00 1.82
883 1301 4.985538 AGATTCGTCGTGACTCCTATTT 57.014 40.909 0.00 0.00 0.00 1.40
884 1302 4.985538 AAGATTCGTCGTGACTCCTATT 57.014 40.909 0.00 0.00 0.00 1.73
885 1303 4.985538 AAAGATTCGTCGTGACTCCTAT 57.014 40.909 0.00 0.00 0.00 2.57
932 1352 2.460918 ACGATTACTACGTGCAGATGC 58.539 47.619 0.00 0.00 42.37 3.91
950 1370 2.124570 CCATCTCCTTGGGGCACG 60.125 66.667 0.00 0.00 32.80 5.34
964 1384 1.746615 GACTGCGTGCATGGACCAT 60.747 57.895 12.15 0.00 0.00 3.55
1004 1431 2.669569 TGCGTTCTGGGCTTCTGC 60.670 61.111 0.00 0.00 38.76 4.26
1033 1467 4.492160 GCGAGACGGCCATGTCGA 62.492 66.667 23.47 0.00 43.70 4.20
1058 1492 1.618030 GAGGAGGAGGAGCAGGAGA 59.382 63.158 0.00 0.00 0.00 3.71
1989 2766 5.862323 ACTATAGCACGGCGTCATAATAAAG 59.138 40.000 10.85 3.09 0.00 1.85
2089 3437 1.973281 CCACTCCATTGCCGTGCTT 60.973 57.895 0.00 0.00 0.00 3.91
2129 3477 3.204827 GCGCATGCTGTCCGGATT 61.205 61.111 17.13 0.00 38.39 3.01
2187 3535 2.261361 CCTCGGTGATGACGTGCA 59.739 61.111 0.00 0.00 0.00 4.57
2210 3558 0.322975 AGGTAGTGCAGCTTGTGGAG 59.677 55.000 0.00 0.00 0.00 3.86
2213 3561 1.802960 CTTGAGGTAGTGCAGCTTGTG 59.197 52.381 0.00 0.00 34.30 3.33
2296 3645 0.024619 GTATCTCGGCGTCGTTTTGC 59.975 55.000 10.18 0.00 37.69 3.68
2683 4060 2.750712 GCGGCATAGGAGTAAAAACCAA 59.249 45.455 0.00 0.00 0.00 3.67
2692 4069 1.195115 TCTTCTTGCGGCATAGGAGT 58.805 50.000 2.28 0.00 0.00 3.85
2693 4070 2.315925 TTCTTCTTGCGGCATAGGAG 57.684 50.000 2.28 8.65 0.00 3.69
2694 4071 2.356135 GTTTCTTCTTGCGGCATAGGA 58.644 47.619 2.28 0.00 0.00 2.94
2695 4072 1.062587 CGTTTCTTCTTGCGGCATAGG 59.937 52.381 2.28 0.00 0.00 2.57
2696 4073 1.062587 CCGTTTCTTCTTGCGGCATAG 59.937 52.381 2.28 4.68 37.69 2.23
2697 4074 1.083489 CCGTTTCTTCTTGCGGCATA 58.917 50.000 2.28 0.00 37.69 3.14
2700 4077 1.912371 CTCCCGTTTCTTCTTGCGGC 61.912 60.000 0.00 0.00 42.54 6.53
2718 4265 8.903820 ACTTTTTACAGATTTTCAACACTAGCT 58.096 29.630 0.00 0.00 0.00 3.32
2805 4353 5.886609 TCAATTCTCCATGAAACCCTACAA 58.113 37.500 0.00 0.00 38.29 2.41
2833 4381 4.512484 CCTCCAGTTTGAATTCTCTCCTC 58.488 47.826 7.05 0.00 0.00 3.71
2863 4740 4.257731 CCCTACCTTCTCTTTGCTCTTTC 58.742 47.826 0.00 0.00 0.00 2.62
2889 4768 8.519799 TGGGGTCATAAGAAATGAAATTAGTC 57.480 34.615 0.00 0.00 33.67 2.59
2930 5132 6.539464 CCTGGAGTGTAGAGGATATATACGTC 59.461 46.154 0.00 0.00 0.00 4.34
2936 5138 3.245658 GGGCCTGGAGTGTAGAGGATATA 60.246 52.174 0.84 0.00 0.00 0.86
2966 5180 1.531149 CCCTTGTAAGTGTGAGCGTTG 59.469 52.381 0.00 0.00 0.00 4.10
3015 5231 4.215613 ACAGGGTTAGTTTCGAGATTTTGC 59.784 41.667 0.00 0.00 0.00 3.68
3016 5232 5.941948 ACAGGGTTAGTTTCGAGATTTTG 57.058 39.130 0.00 0.00 0.00 2.44
3050 5267 5.335426 GGCTACGACGAGGTGATATAATTGA 60.335 44.000 0.00 0.00 0.00 2.57
3051 5268 4.857588 GGCTACGACGAGGTGATATAATTG 59.142 45.833 0.00 0.00 0.00 2.32
3054 5271 2.481568 CGGCTACGACGAGGTGATATAA 59.518 50.000 0.00 0.00 44.60 0.98
3056 5273 0.873054 CGGCTACGACGAGGTGATAT 59.127 55.000 0.00 0.00 44.60 1.63
3071 5288 3.916392 CTCTTCGTTCGTGGCGGCT 62.916 63.158 11.43 0.00 0.00 5.52
3113 5330 4.702392 CCGTCACAAAGAAAATCTCTTCG 58.298 43.478 0.00 0.00 44.00 3.79
3122 5339 1.028905 CCAAGGCCGTCACAAAGAAA 58.971 50.000 0.00 0.00 0.00 2.52
3124 5341 0.534203 GTCCAAGGCCGTCACAAAGA 60.534 55.000 0.00 0.00 0.00 2.52
3129 5346 0.240945 CATTTGTCCAAGGCCGTCAC 59.759 55.000 0.00 0.00 0.00 3.67
3136 5353 0.040204 AGGCTCCCATTTGTCCAAGG 59.960 55.000 0.00 0.00 0.00 3.61
3137 5354 1.821136 GAAGGCTCCCATTTGTCCAAG 59.179 52.381 0.00 0.00 0.00 3.61
3138 5355 1.886222 CGAAGGCTCCCATTTGTCCAA 60.886 52.381 0.00 0.00 0.00 3.53
3143 5360 0.322456 TCCACGAAGGCTCCCATTTG 60.322 55.000 0.00 0.00 37.29 2.32
3158 5376 3.195661 ACAAAGTCAACTCTTCGTCCAC 58.804 45.455 0.00 0.00 0.00 4.02
3203 5439 3.385384 CAGAGCGGGGCTGTCTCA 61.385 66.667 0.00 0.00 39.88 3.27
3206 5442 4.459089 GGTCAGAGCGGGGCTGTC 62.459 72.222 0.00 0.00 39.88 3.51
3210 5446 2.187163 GTTAGGTCAGAGCGGGGC 59.813 66.667 0.00 0.00 0.00 5.80
3219 5455 1.195442 TGGCCGTGATGGTTAGGTCA 61.195 55.000 0.00 0.00 41.21 4.02
3225 5461 2.672996 GCAGTGGCCGTGATGGTT 60.673 61.111 9.09 0.00 41.21 3.67
3241 5477 3.501458 GATGGTCTAGTCGGCGGGC 62.501 68.421 7.21 0.00 0.00 6.13
3245 5481 2.508751 GGGGGATGGTCTAGTCGGC 61.509 68.421 0.00 0.00 0.00 5.54
3255 5491 4.835456 TCCGGGGAAGGGGGATGG 62.835 72.222 0.00 0.00 0.00 3.51
3259 5495 3.739613 CCTTTCCGGGGAAGGGGG 61.740 72.222 24.54 1.67 44.52 5.40
3262 5498 2.998949 CCTCCTTTCCGGGGAAGG 59.001 66.667 26.01 26.01 33.87 3.46
3295 5531 1.532728 GAGGTCCCTCGCTCTCCTA 59.467 63.158 0.00 0.00 33.06 2.94
3307 5543 2.510918 GCGTAAAGGCGGAGGTCC 60.511 66.667 0.00 0.00 0.00 4.46
3325 5561 1.868251 GAAGACGACTACGCCGCAG 60.868 63.158 0.00 0.00 43.96 5.18
3326 5562 2.177531 GAAGACGACTACGCCGCA 59.822 61.111 0.00 0.00 43.96 5.69
3327 5563 2.150837 GTGAAGACGACTACGCCGC 61.151 63.158 0.00 0.00 43.96 6.53
3328 5564 1.513586 GGTGAAGACGACTACGCCG 60.514 63.158 0.00 0.00 43.96 6.46
3338 5575 1.244019 ATTGCGCCCAAGGTGAAGAC 61.244 55.000 4.18 0.00 34.74 3.01
3351 5588 1.889573 GAGAGGCCTGGTATTGCGC 60.890 63.158 12.00 0.00 0.00 6.09
3367 5604 4.803426 GTCGAGCCGCACCAGGAG 62.803 72.222 0.00 0.00 0.00 3.69
3379 5616 4.135153 CAGGGAGTGGCCGTCGAG 62.135 72.222 0.00 0.00 37.63 4.04
3402 5639 0.673333 TGCCGTAGTGTCTTGCCATG 60.673 55.000 0.00 0.00 0.00 3.66
3405 5642 0.517316 CTTTGCCGTAGTGTCTTGCC 59.483 55.000 0.00 0.00 0.00 4.52
3407 5644 1.225855 TGCTTTGCCGTAGTGTCTTG 58.774 50.000 0.00 0.00 0.00 3.02
3408 5645 1.806542 CATGCTTTGCCGTAGTGTCTT 59.193 47.619 0.00 0.00 0.00 3.01
3411 5648 1.442769 CTCATGCTTTGCCGTAGTGT 58.557 50.000 0.00 0.00 0.00 3.55
3420 5657 0.445436 GACGTCCTGCTCATGCTTTG 59.555 55.000 3.51 0.00 40.48 2.77
3422 5659 1.446792 CGACGTCCTGCTCATGCTT 60.447 57.895 10.58 0.00 40.48 3.91
3423 5660 2.182791 CGACGTCCTGCTCATGCT 59.817 61.111 10.58 0.00 40.48 3.79
3424 5661 2.125912 ACGACGTCCTGCTCATGC 60.126 61.111 10.58 0.00 40.20 4.06
3425 5662 0.733150 TAGACGACGTCCTGCTCATG 59.267 55.000 23.76 0.00 32.18 3.07
3426 5663 0.733729 GTAGACGACGTCCTGCTCAT 59.266 55.000 23.76 6.63 32.18 2.90
3427 5664 0.321387 AGTAGACGACGTCCTGCTCA 60.321 55.000 23.76 0.56 32.18 4.26
3428 5665 0.803740 AAGTAGACGACGTCCTGCTC 59.196 55.000 23.76 10.17 32.18 4.26
3429 5666 0.803740 GAAGTAGACGACGTCCTGCT 59.196 55.000 23.76 15.89 32.18 4.24
3430 5667 0.803740 AGAAGTAGACGACGTCCTGC 59.196 55.000 23.76 13.47 37.26 4.85
3431 5668 1.130749 CCAGAAGTAGACGACGTCCTG 59.869 57.143 23.76 20.71 37.26 3.86
3432 5669 1.451067 CCAGAAGTAGACGACGTCCT 58.549 55.000 23.76 12.28 37.26 3.85
3433 5670 0.179169 GCCAGAAGTAGACGACGTCC 60.179 60.000 23.76 10.09 37.26 4.79
3434 5671 0.179169 GGCCAGAAGTAGACGACGTC 60.179 60.000 20.25 20.25 36.86 4.34
3435 5672 0.892358 TGGCCAGAAGTAGACGACGT 60.892 55.000 0.00 0.00 0.00 4.34
3436 5673 0.456221 ATGGCCAGAAGTAGACGACG 59.544 55.000 13.05 0.00 0.00 5.12
3437 5674 1.476891 TGATGGCCAGAAGTAGACGAC 59.523 52.381 13.05 0.00 0.00 4.34
3445 5682 0.178767 TCGATGGTGATGGCCAGAAG 59.821 55.000 13.05 0.00 42.47 2.85
3451 5688 2.315925 TCTTCTTCGATGGTGATGGC 57.684 50.000 0.00 0.00 0.00 4.40
3454 5691 3.834489 AGCATCTTCTTCGATGGTGAT 57.166 42.857 4.87 0.75 46.81 3.06
3458 5695 0.580578 CGCAGCATCTTCTTCGATGG 59.419 55.000 0.00 0.00 40.82 3.51
3477 5714 1.451207 TGGATACATGCACACCGGC 60.451 57.895 0.00 0.00 46.17 6.13
3478 5715 4.952704 TGGATACATGCACACCGG 57.047 55.556 0.00 0.00 46.17 5.28
3488 5725 1.337354 ACGCACACACGATTGGATACA 60.337 47.619 0.00 0.00 40.48 2.29
3503 5740 7.611821 TTAAAACTTTAAGCAATACACGCAC 57.388 32.000 0.00 0.00 0.00 5.34
3504 5741 8.804688 ATTTAAAACTTTAAGCAATACACGCA 57.195 26.923 0.00 0.00 34.45 5.24
3550 5787 2.949447 TCCGGTTGTAGATAGGGGTAC 58.051 52.381 0.00 0.00 0.00 3.34
3551 5788 3.503365 CATCCGGTTGTAGATAGGGGTA 58.497 50.000 0.00 0.00 0.00 3.69
3552 5789 2.326428 CATCCGGTTGTAGATAGGGGT 58.674 52.381 0.00 0.00 0.00 4.95
3553 5790 1.002087 GCATCCGGTTGTAGATAGGGG 59.998 57.143 13.90 0.00 0.00 4.79
3554 5791 1.336887 CGCATCCGGTTGTAGATAGGG 60.337 57.143 13.90 0.00 0.00 3.53
3555 5792 1.611977 TCGCATCCGGTTGTAGATAGG 59.388 52.381 13.90 0.00 34.56 2.57
3556 5793 2.552743 TCTCGCATCCGGTTGTAGATAG 59.447 50.000 13.90 5.24 34.56 2.08
3557 5794 2.552743 CTCTCGCATCCGGTTGTAGATA 59.447 50.000 13.90 6.30 34.56 1.98
3558 5795 1.338337 CTCTCGCATCCGGTTGTAGAT 59.662 52.381 13.90 0.00 34.56 1.98
3559 5796 0.738975 CTCTCGCATCCGGTTGTAGA 59.261 55.000 13.90 14.51 34.56 2.59
3560 5797 0.738975 TCTCTCGCATCCGGTTGTAG 59.261 55.000 13.90 11.41 34.56 2.74
3561 5798 1.179152 TTCTCTCGCATCCGGTTGTA 58.821 50.000 13.90 2.46 34.56 2.41
3562 5799 0.320374 TTTCTCTCGCATCCGGTTGT 59.680 50.000 13.90 0.00 34.56 3.32
3563 5800 1.438651 TTTTCTCTCGCATCCGGTTG 58.561 50.000 8.23 8.23 34.56 3.77
3564 5801 2.403252 ATTTTCTCTCGCATCCGGTT 57.597 45.000 0.00 0.00 34.56 4.44
3565 5802 2.403252 AATTTTCTCTCGCATCCGGT 57.597 45.000 0.00 0.00 34.56 5.28
3566 5803 3.621268 TGTAAATTTTCTCTCGCATCCGG 59.379 43.478 0.00 0.00 34.56 5.14
3567 5804 4.857871 TGTAAATTTTCTCTCGCATCCG 57.142 40.909 0.00 0.00 0.00 4.18
3568 5805 6.183309 ACTTGTAAATTTTCTCTCGCATCC 57.817 37.500 0.00 0.00 0.00 3.51
3569 5806 6.032880 GCAACTTGTAAATTTTCTCTCGCATC 59.967 38.462 0.00 0.00 0.00 3.91
3570 5807 5.858581 GCAACTTGTAAATTTTCTCTCGCAT 59.141 36.000 0.00 0.00 0.00 4.73
3571 5808 5.212194 GCAACTTGTAAATTTTCTCTCGCA 58.788 37.500 0.00 0.00 0.00 5.10
3572 5809 4.617223 GGCAACTTGTAAATTTTCTCTCGC 59.383 41.667 0.00 0.00 0.00 5.03
3573 5810 4.846137 CGGCAACTTGTAAATTTTCTCTCG 59.154 41.667 0.00 0.00 0.00 4.04
3574 5811 5.758924 ACGGCAACTTGTAAATTTTCTCTC 58.241 37.500 0.00 0.00 0.00 3.20
3575 5812 5.560183 CGACGGCAACTTGTAAATTTTCTCT 60.560 40.000 0.00 0.00 0.00 3.10
3576 5813 4.611366 CGACGGCAACTTGTAAATTTTCTC 59.389 41.667 0.00 0.00 0.00 2.87
3577 5814 4.273969 TCGACGGCAACTTGTAAATTTTCT 59.726 37.500 0.00 0.00 0.00 2.52
3578 5815 4.529446 TCGACGGCAACTTGTAAATTTTC 58.471 39.130 0.00 0.00 0.00 2.29
3579 5816 4.555348 TCGACGGCAACTTGTAAATTTT 57.445 36.364 0.00 0.00 0.00 1.82
3580 5817 4.555348 TTCGACGGCAACTTGTAAATTT 57.445 36.364 0.00 0.00 0.00 1.82
3581 5818 4.555348 TTTCGACGGCAACTTGTAAATT 57.445 36.364 0.00 0.00 0.00 1.82
3582 5819 4.555348 TTTTCGACGGCAACTTGTAAAT 57.445 36.364 0.00 0.00 0.00 1.40
3583 5820 4.555348 ATTTTCGACGGCAACTTGTAAA 57.445 36.364 0.00 0.00 0.00 2.01
3584 5821 4.555348 AATTTTCGACGGCAACTTGTAA 57.445 36.364 0.00 0.00 0.00 2.41
3585 5822 4.555348 AAATTTTCGACGGCAACTTGTA 57.445 36.364 0.00 0.00 0.00 2.41
3586 5823 3.430333 AAATTTTCGACGGCAACTTGT 57.570 38.095 0.00 0.00 0.00 3.16
3587 5824 4.378616 CACTAAATTTTCGACGGCAACTTG 59.621 41.667 0.00 0.00 0.00 3.16
3588 5825 4.035909 ACACTAAATTTTCGACGGCAACTT 59.964 37.500 0.00 0.00 0.00 2.66
3589 5826 3.562557 ACACTAAATTTTCGACGGCAACT 59.437 39.130 0.00 0.00 0.00 3.16
3590 5827 3.880610 ACACTAAATTTTCGACGGCAAC 58.119 40.909 0.00 0.00 0.00 4.17
3591 5828 4.555348 AACACTAAATTTTCGACGGCAA 57.445 36.364 0.00 0.00 0.00 4.52
3592 5829 5.670149 TTAACACTAAATTTTCGACGGCA 57.330 34.783 0.00 0.00 0.00 5.69
3593 5830 7.045160 GCTATTTAACACTAAATTTTCGACGGC 60.045 37.037 0.00 0.00 38.44 5.68
3594 5831 7.427318 GGCTATTTAACACTAAATTTTCGACGG 59.573 37.037 0.00 0.00 38.44 4.79
3595 5832 7.958567 TGGCTATTTAACACTAAATTTTCGACG 59.041 33.333 0.00 0.00 38.44 5.12
3596 5833 9.274065 CTGGCTATTTAACACTAAATTTTCGAC 57.726 33.333 0.00 0.00 38.44 4.20
3597 5834 7.966204 GCTGGCTATTTAACACTAAATTTTCGA 59.034 33.333 0.00 0.00 38.44 3.71
3598 5835 7.220108 GGCTGGCTATTTAACACTAAATTTTCG 59.780 37.037 0.00 0.00 38.44 3.46
3599 5836 7.491372 GGGCTGGCTATTTAACACTAAATTTTC 59.509 37.037 0.00 0.00 38.44 2.29
3600 5837 7.180229 AGGGCTGGCTATTTAACACTAAATTTT 59.820 33.333 0.00 0.00 38.44 1.82
3601 5838 6.667848 AGGGCTGGCTATTTAACACTAAATTT 59.332 34.615 0.00 0.00 38.44 1.82
3602 5839 6.194967 AGGGCTGGCTATTTAACACTAAATT 58.805 36.000 0.00 0.00 38.44 1.82
3603 5840 5.766590 AGGGCTGGCTATTTAACACTAAAT 58.233 37.500 0.00 0.00 40.22 1.40
3604 5841 5.187621 AGGGCTGGCTATTTAACACTAAA 57.812 39.130 0.00 0.00 0.00 1.85
3605 5842 4.855298 AGGGCTGGCTATTTAACACTAA 57.145 40.909 0.00 0.00 0.00 2.24
3606 5843 4.855298 AAGGGCTGGCTATTTAACACTA 57.145 40.909 0.00 0.00 0.00 2.74
3607 5844 3.739401 AAGGGCTGGCTATTTAACACT 57.261 42.857 0.00 0.00 0.00 3.55
3608 5845 3.181500 CGAAAGGGCTGGCTATTTAACAC 60.181 47.826 0.00 0.00 0.00 3.32
3609 5846 3.013921 CGAAAGGGCTGGCTATTTAACA 58.986 45.455 0.00 0.00 0.00 2.41
3610 5847 3.064958 GTCGAAAGGGCTGGCTATTTAAC 59.935 47.826 0.00 2.45 0.00 2.01
3611 5848 3.275999 GTCGAAAGGGCTGGCTATTTAA 58.724 45.455 0.00 0.00 0.00 1.52
3612 5849 2.420967 GGTCGAAAGGGCTGGCTATTTA 60.421 50.000 0.00 0.00 0.00 1.40
3613 5850 1.682087 GGTCGAAAGGGCTGGCTATTT 60.682 52.381 0.00 3.00 0.00 1.40
3614 5851 0.107165 GGTCGAAAGGGCTGGCTATT 60.107 55.000 0.00 0.00 0.00 1.73
3615 5852 1.527370 GGTCGAAAGGGCTGGCTAT 59.473 57.895 0.00 0.00 0.00 2.97
3616 5853 2.666098 GGGTCGAAAGGGCTGGCTA 61.666 63.158 0.00 0.00 0.00 3.93
3617 5854 4.035102 GGGTCGAAAGGGCTGGCT 62.035 66.667 0.00 0.00 0.00 4.75
3619 5856 3.248446 TTCGGGTCGAAAGGGCTGG 62.248 63.158 0.00 0.00 43.00 4.85
3620 5857 2.345991 TTCGGGTCGAAAGGGCTG 59.654 61.111 0.00 0.00 43.00 4.85
3627 5864 4.338118 AGGTAACGTATATTTCGGGTCGAA 59.662 41.667 0.00 0.00 43.16 3.71
3628 5865 3.882888 AGGTAACGTATATTTCGGGTCGA 59.117 43.478 0.00 0.00 46.39 4.20
3629 5866 4.228912 AGGTAACGTATATTTCGGGTCG 57.771 45.455 0.00 0.00 46.39 4.79
3630 5867 5.157067 GCTAGGTAACGTATATTTCGGGTC 58.843 45.833 0.00 0.00 46.39 4.46
3631 5868 4.320494 CGCTAGGTAACGTATATTTCGGGT 60.320 45.833 0.00 0.00 46.39 5.28
3632 5869 4.161333 CGCTAGGTAACGTATATTTCGGG 58.839 47.826 0.00 0.00 46.39 5.14
3633 5870 4.083324 TCCGCTAGGTAACGTATATTTCGG 60.083 45.833 0.00 0.00 46.39 4.30
3634 5871 4.848299 GTCCGCTAGGTAACGTATATTTCG 59.152 45.833 0.00 0.00 46.39 3.46
3635 5872 5.762045 TGTCCGCTAGGTAACGTATATTTC 58.238 41.667 0.00 0.00 46.39 2.17
3636 5873 5.772825 TGTCCGCTAGGTAACGTATATTT 57.227 39.130 0.00 0.00 46.39 1.40
3637 5874 5.300286 AGTTGTCCGCTAGGTAACGTATATT 59.700 40.000 0.00 0.00 46.39 1.28
3638 5875 4.823989 AGTTGTCCGCTAGGTAACGTATAT 59.176 41.667 0.00 0.00 46.39 0.86
3639 5876 4.199310 AGTTGTCCGCTAGGTAACGTATA 58.801 43.478 0.00 0.00 46.39 1.47
3640 5877 3.019564 AGTTGTCCGCTAGGTAACGTAT 58.980 45.455 0.00 0.00 46.39 3.06
3641 5878 2.420022 GAGTTGTCCGCTAGGTAACGTA 59.580 50.000 0.00 0.00 46.39 3.57
3642 5879 1.200948 GAGTTGTCCGCTAGGTAACGT 59.799 52.381 0.00 0.00 46.39 3.99
3643 5880 1.468736 GGAGTTGTCCGCTAGGTAACG 60.469 57.143 0.00 0.00 39.15 3.18
3644 5881 2.290531 GGAGTTGTCCGCTAGGTAAC 57.709 55.000 0.00 0.00 39.05 2.50
3654 5891 1.079750 GCCGTCAGAGGAGTTGTCC 60.080 63.158 0.00 0.00 44.33 4.02
3655 5892 1.174783 TAGCCGTCAGAGGAGTTGTC 58.825 55.000 0.00 0.00 0.00 3.18
3656 5893 1.853963 ATAGCCGTCAGAGGAGTTGT 58.146 50.000 0.00 0.00 0.00 3.32
3657 5894 2.287909 GCTATAGCCGTCAGAGGAGTTG 60.288 54.545 14.13 0.00 34.31 3.16
3658 5895 1.957877 GCTATAGCCGTCAGAGGAGTT 59.042 52.381 14.13 0.00 34.31 3.01
3659 5896 1.611519 GCTATAGCCGTCAGAGGAGT 58.388 55.000 14.13 0.00 34.31 3.85
3660 5897 0.519519 CGCTATAGCCGTCAGAGGAG 59.480 60.000 19.00 0.00 37.91 3.69
3661 5898 0.179026 ACGCTATAGCCGTCAGAGGA 60.179 55.000 19.00 0.00 37.91 3.71
3662 5899 0.039978 CACGCTATAGCCGTCAGAGG 60.040 60.000 19.00 4.90 37.91 3.69
3663 5900 0.661780 GCACGCTATAGCCGTCAGAG 60.662 60.000 19.00 5.62 37.91 3.35
3664 5901 1.101635 AGCACGCTATAGCCGTCAGA 61.102 55.000 19.00 0.00 37.91 3.27
3665 5902 0.591659 TAGCACGCTATAGCCGTCAG 59.408 55.000 19.00 7.06 37.91 3.51
3666 5903 0.309922 GTAGCACGCTATAGCCGTCA 59.690 55.000 19.00 5.43 37.91 4.35
3667 5904 0.592148 AGTAGCACGCTATAGCCGTC 59.408 55.000 19.00 12.70 37.91 4.79
3668 5905 1.030457 AAGTAGCACGCTATAGCCGT 58.970 50.000 19.00 16.14 37.91 5.68
3669 5906 2.983402 TAAGTAGCACGCTATAGCCG 57.017 50.000 19.00 15.52 37.91 5.52
3670 5907 3.429207 GCTTTAAGTAGCACGCTATAGCC 59.571 47.826 19.00 5.28 40.89 3.93
3671 5908 4.049186 TGCTTTAAGTAGCACGCTATAGC 58.951 43.478 15.09 15.09 45.72 2.97
3672 5909 5.174035 CACTGCTTTAAGTAGCACGCTATAG 59.826 44.000 9.90 0.00 45.72 1.31
3673 5910 5.041287 CACTGCTTTAAGTAGCACGCTATA 58.959 41.667 9.90 0.00 45.72 1.31
3674 5911 3.865745 CACTGCTTTAAGTAGCACGCTAT 59.134 43.478 9.90 0.00 45.72 2.97
3675 5912 3.250744 CACTGCTTTAAGTAGCACGCTA 58.749 45.455 9.90 0.00 45.72 4.26
3676 5913 2.069273 CACTGCTTTAAGTAGCACGCT 58.931 47.619 9.90 0.00 45.72 5.07
3677 5914 1.128692 CCACTGCTTTAAGTAGCACGC 59.871 52.381 9.90 0.00 45.72 5.34
3678 5915 2.413837 ACCACTGCTTTAAGTAGCACG 58.586 47.619 9.90 0.82 45.72 5.34
3679 5916 5.234543 GCTATACCACTGCTTTAAGTAGCAC 59.765 44.000 9.90 0.00 45.72 4.40
3681 5918 5.602628 AGCTATACCACTGCTTTAAGTAGC 58.397 41.667 9.90 4.71 41.59 3.58
3692 5929 7.351891 TGGAAACACGGTAGCTATACCACTG 62.352 48.000 6.48 3.22 43.61 3.66
3693 5930 5.356911 TGGAAACACGGTAGCTATACCACT 61.357 45.833 6.48 0.00 43.61 4.00
3694 5931 3.119029 TGGAAACACGGTAGCTATACCAC 60.119 47.826 6.48 0.00 43.61 4.16
3695 5932 3.098377 TGGAAACACGGTAGCTATACCA 58.902 45.455 6.48 0.00 43.61 3.25
3696 5933 3.714391 CTGGAAACACGGTAGCTATACC 58.286 50.000 0.00 0.00 41.52 2.73
3697 5934 3.121544 GCTGGAAACACGGTAGCTATAC 58.878 50.000 0.00 0.00 35.60 1.47
3698 5935 2.101917 GGCTGGAAACACGGTAGCTATA 59.898 50.000 0.00 0.00 35.60 1.31
3699 5936 1.134491 GGCTGGAAACACGGTAGCTAT 60.134 52.381 0.00 0.00 35.60 2.97
3700 5937 0.248289 GGCTGGAAACACGGTAGCTA 59.752 55.000 0.00 0.00 35.60 3.32
3701 5938 1.003718 GGCTGGAAACACGGTAGCT 60.004 57.895 0.00 0.00 35.60 3.32
3702 5939 2.388232 CGGCTGGAAACACGGTAGC 61.388 63.158 0.00 0.00 35.60 3.58
3703 5940 2.388232 GCGGCTGGAAACACGGTAG 61.388 63.158 0.00 0.00 35.60 3.18
3704 5941 2.357760 GCGGCTGGAAACACGGTA 60.358 61.111 0.00 0.00 35.60 4.02
3707 5944 3.423154 GAGGCGGCTGGAAACACG 61.423 66.667 19.63 0.00 35.60 4.49
3708 5945 2.281484 TGAGGCGGCTGGAAACAC 60.281 61.111 19.63 0.00 35.60 3.32
3709 5946 2.281484 GTGAGGCGGCTGGAAACA 60.281 61.111 19.63 4.34 39.59 2.83
3710 5947 3.056328 GGTGAGGCGGCTGGAAAC 61.056 66.667 19.63 9.20 0.00 2.78
3711 5948 3.249189 AGGTGAGGCGGCTGGAAA 61.249 61.111 19.63 0.00 0.00 3.13
3712 5949 4.020617 CAGGTGAGGCGGCTGGAA 62.021 66.667 19.63 0.00 0.00 3.53
3714 5951 4.463879 CTCAGGTGAGGCGGCTGG 62.464 72.222 19.63 0.03 38.48 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.