Multiple sequence alignment - TraesCS3D01G160100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G160100 chr3D 100.000 5201 0 0 1 5201 130932092 130937292 0.000000e+00 9605.0
1 TraesCS3D01G160100 chr3D 89.091 55 6 0 1001 1055 400277434 400277380 9.350000e-08 69.4
2 TraesCS3D01G160100 chr3B 91.360 1574 74 26 3299 4844 187354609 187356148 0.000000e+00 2097.0
3 TraesCS3D01G160100 chr3B 92.122 1282 65 20 2023 3295 187353303 187354557 0.000000e+00 1775.0
4 TraesCS3D01G160100 chr3B 87.604 718 40 19 705 1399 187351857 187352548 0.000000e+00 787.0
5 TraesCS3D01G160100 chr3B 88.793 348 31 3 4859 5200 187356131 187356476 2.240000e-113 420.0
6 TraesCS3D01G160100 chr3B 85.897 234 16 3 1705 1922 187352687 187352919 3.130000e-57 233.0
7 TraesCS3D01G160100 chr3B 87.000 200 7 8 310 490 187351668 187351867 1.900000e-49 207.0
8 TraesCS3D01G160100 chr3B 99.029 103 1 0 1922 2024 187353062 187353164 8.890000e-43 185.0
9 TraesCS3D01G160100 chr3B 89.091 55 6 0 1001 1055 525832718 525832664 9.350000e-08 69.4
10 TraesCS3D01G160100 chr3B 100.000 33 0 0 1160 1192 447229387 447229419 1.560000e-05 62.1
11 TraesCS3D01G160100 chr3A 91.740 908 46 12 1922 2821 142897607 142898493 0.000000e+00 1234.0
12 TraesCS3D01G160100 chr3A 94.259 749 27 7 3300 4035 142899120 142899865 0.000000e+00 1131.0
13 TraesCS3D01G160100 chr3A 92.758 649 36 6 4198 4841 142899863 142900505 0.000000e+00 928.0
14 TraesCS3D01G160100 chr3A 85.560 741 45 30 704 1399 142896363 142897086 0.000000e+00 719.0
15 TraesCS3D01G160100 chr3A 90.737 475 27 7 2836 3295 142898596 142899068 7.400000e-173 617.0
16 TraesCS3D01G160100 chr3A 87.861 346 26 6 4859 5200 142900491 142900824 4.880000e-105 392.0
17 TraesCS3D01G160100 chr3A 85.312 320 18 14 200 490 142896055 142896374 2.350000e-78 303.0
18 TraesCS3D01G160100 chr3A 86.266 233 17 2 1705 1922 142897239 142897471 6.730000e-59 239.0
19 TraesCS3D01G160100 chr3A 94.565 92 5 0 22 113 142895330 142895421 5.430000e-30 143.0
20 TraesCS3D01G160100 chr3A 89.091 55 6 0 1001 1055 519210206 519210152 9.350000e-08 69.4
21 TraesCS3D01G160100 chr5D 90.222 225 19 3 486 709 459318440 459318218 1.830000e-74 291.0
22 TraesCS3D01G160100 chr5D 90.244 41 2 2 1669 1709 71935531 71935569 9.000000e-03 52.8
23 TraesCS3D01G160100 chr4B 89.862 217 17 5 490 705 71580454 71580666 1.850000e-69 274.0
24 TraesCS3D01G160100 chr1D 91.139 158 12 2 547 703 310768838 310768682 4.080000e-51 213.0
25 TraesCS3D01G160100 chr1D 87.500 56 7 0 1001 1056 429696452 429696507 1.210000e-06 65.8
26 TraesCS3D01G160100 chr1A 88.235 102 12 0 1280 1381 527175291 527175392 7.070000e-24 122.0
27 TraesCS3D01G160100 chr1A 89.286 56 6 0 1001 1056 527174617 527174672 2.600000e-08 71.3
28 TraesCS3D01G160100 chr2D 77.215 158 28 5 1161 1318 36758329 36758180 9.280000e-13 86.1
29 TraesCS3D01G160100 chr1B 88.333 60 7 0 1001 1060 580631916 580631975 7.220000e-09 73.1
30 TraesCS3D01G160100 chr5B 94.872 39 1 1 1677 1715 414834450 414834487 5.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G160100 chr3D 130932092 130937292 5200 False 9605.000000 9605 100.000000 1 5201 1 chr3D.!!$F1 5200
1 TraesCS3D01G160100 chr3B 187351668 187356476 4808 False 814.857143 2097 90.257857 310 5200 7 chr3B.!!$F2 4890
2 TraesCS3D01G160100 chr3A 142895330 142900824 5494 False 634.000000 1234 89.895333 22 5200 9 chr3A.!!$F1 5178

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
604 1213 0.038159 GTACTGAGTCTTGCACGGCT 60.038 55.000 0.00 0.0 0.00 5.52 F
1268 1930 0.037697 GGGGTTTGAACGATTTGGGC 60.038 55.000 0.00 0.0 0.00 5.36 F
1456 2122 0.325933 TGACATGCTTGGTGCTAGCT 59.674 50.000 17.23 0.0 43.37 3.32 F
1457 2123 1.271543 TGACATGCTTGGTGCTAGCTT 60.272 47.619 17.23 0.0 43.37 3.74 F
2620 3610 0.905357 AGTTGCGTTCTCTATGGCCT 59.095 50.000 3.32 0.0 0.00 5.19 F
3481 4633 0.836606 TTCAGAGTCTTGGTGTGGCA 59.163 50.000 0.00 0.0 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 3330 0.419459 AGAGACTGGAGGATTGGGGT 59.581 55.000 0.00 0.00 0.00 4.95 R
2545 3535 0.690411 AGGATGGCAGGGTCTCTGAG 60.690 60.000 3.10 0.00 46.18 3.35 R
2594 3584 1.221414 AGAGAACGCAACTGAACAGC 58.779 50.000 1.46 0.00 0.00 4.40 R
3113 4204 2.367567 ACCATATTAAGCGTCCGGTGAT 59.632 45.455 0.00 0.00 0.00 3.06 R
3651 4803 0.111061 AGCCTGCAACCAGAATGACA 59.889 50.000 0.00 0.00 41.77 3.58 R
4853 6029 0.032130 TATGTTCTCGCTGGATCCGC 59.968 55.000 15.81 15.81 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.079090 CGTTCCAGTGAGCTAGCG 57.921 61.111 9.55 0.00 0.00 4.26
18 19 1.213013 CGTTCCAGTGAGCTAGCGT 59.787 57.895 9.55 0.00 0.00 5.07
19 20 0.450583 CGTTCCAGTGAGCTAGCGTA 59.549 55.000 9.55 0.00 0.00 4.42
20 21 1.065701 CGTTCCAGTGAGCTAGCGTAT 59.934 52.381 9.55 0.00 0.00 3.06
21 22 2.289820 CGTTCCAGTGAGCTAGCGTATA 59.710 50.000 9.55 0.00 0.00 1.47
22 23 3.058155 CGTTCCAGTGAGCTAGCGTATAT 60.058 47.826 9.55 0.00 0.00 0.86
23 24 4.230657 GTTCCAGTGAGCTAGCGTATATG 58.769 47.826 9.55 6.08 0.00 1.78
24 25 3.751518 TCCAGTGAGCTAGCGTATATGA 58.248 45.455 9.55 0.95 0.00 2.15
25 26 4.336280 TCCAGTGAGCTAGCGTATATGAT 58.664 43.478 9.55 0.00 0.00 2.45
26 27 5.497474 TCCAGTGAGCTAGCGTATATGATA 58.503 41.667 9.55 0.00 0.00 2.15
27 28 6.122964 TCCAGTGAGCTAGCGTATATGATAT 58.877 40.000 9.55 0.00 0.00 1.63
69 70 8.854614 AACTAAGTAGCATTCAGAATCTGTTT 57.145 30.769 10.36 0.00 32.61 2.83
81 82 5.827797 TCAGAATCTGTTTACAAAAGGTGCT 59.172 36.000 10.36 0.00 32.61 4.40
91 92 0.744281 AAAAGGTGCTGGTCGGTTTG 59.256 50.000 0.00 0.00 0.00 2.93
123 124 3.392769 TGAGTTTCAACGTTGTTTCCG 57.607 42.857 26.47 1.19 0.00 4.30
124 125 2.743126 TGAGTTTCAACGTTGTTTCCGT 59.257 40.909 26.47 8.94 40.92 4.69
125 126 6.344819 GTTGAGTTTCAACGTTGTTTCCGTT 61.345 40.000 26.47 8.33 45.88 4.44
126 127 4.391216 TGAGTTTCAACGTTGTTTCCGTTA 59.609 37.500 26.47 3.00 45.91 3.18
127 128 4.650985 AGTTTCAACGTTGTTTCCGTTAC 58.349 39.130 26.47 13.56 45.91 2.50
128 129 4.153835 AGTTTCAACGTTGTTTCCGTTACA 59.846 37.500 26.47 1.47 45.91 2.41
129 130 4.879104 TTCAACGTTGTTTCCGTTACAT 57.121 36.364 26.47 0.00 45.91 2.29
130 131 4.198473 TCAACGTTGTTTCCGTTACATG 57.802 40.909 26.47 0.00 45.91 3.21
131 132 2.673976 ACGTTGTTTCCGTTACATGC 57.326 45.000 0.00 0.00 34.28 4.06
132 133 1.264826 ACGTTGTTTCCGTTACATGCC 59.735 47.619 0.00 0.00 34.28 4.40
133 134 1.264557 CGTTGTTTCCGTTACATGCCA 59.735 47.619 0.00 0.00 0.00 4.92
134 135 2.287069 CGTTGTTTCCGTTACATGCCAA 60.287 45.455 0.00 0.00 0.00 4.52
135 136 3.610585 CGTTGTTTCCGTTACATGCCAAT 60.611 43.478 0.00 0.00 0.00 3.16
136 137 4.303282 GTTGTTTCCGTTACATGCCAATT 58.697 39.130 0.00 0.00 0.00 2.32
137 138 4.592485 TGTTTCCGTTACATGCCAATTT 57.408 36.364 0.00 0.00 0.00 1.82
138 139 4.950050 TGTTTCCGTTACATGCCAATTTT 58.050 34.783 0.00 0.00 0.00 1.82
139 140 4.985409 TGTTTCCGTTACATGCCAATTTTC 59.015 37.500 0.00 0.00 0.00 2.29
140 141 4.855715 TTCCGTTACATGCCAATTTTCA 57.144 36.364 0.00 0.00 0.00 2.69
141 142 5.398603 TTCCGTTACATGCCAATTTTCAT 57.601 34.783 0.00 0.00 0.00 2.57
142 143 6.516739 TTCCGTTACATGCCAATTTTCATA 57.483 33.333 0.00 0.00 0.00 2.15
177 178 7.346751 ACAAACATTAGGTGTGTCAATCTTT 57.653 32.000 0.00 0.00 44.95 2.52
178 179 7.781056 ACAAACATTAGGTGTGTCAATCTTTT 58.219 30.769 0.00 0.00 44.95 2.27
179 180 8.257306 ACAAACATTAGGTGTGTCAATCTTTTT 58.743 29.630 0.00 0.00 44.95 1.94
196 197 2.721945 TTTTTGCGGGGTAGGTGTG 58.278 52.632 0.00 0.00 0.00 3.82
198 199 0.535553 TTTTGCGGGGTAGGTGTGTC 60.536 55.000 0.00 0.00 0.00 3.67
202 771 0.322187 GCGGGGTAGGTGTGTCAATT 60.322 55.000 0.00 0.00 0.00 2.32
209 778 4.332828 GGTAGGTGTGTCAATTTTAGCCT 58.667 43.478 0.00 0.00 0.00 4.58
212 781 4.469657 AGGTGTGTCAATTTTAGCCTCAA 58.530 39.130 0.00 0.00 0.00 3.02
229 798 2.448582 AAACCAGACGACCCCTGCA 61.449 57.895 0.00 0.00 0.00 4.41
238 811 1.837439 ACGACCCCTGCATTCATTCTA 59.163 47.619 0.00 0.00 0.00 2.10
240 813 2.158900 CGACCCCTGCATTCATTCTAGT 60.159 50.000 0.00 0.00 0.00 2.57
241 814 3.471680 GACCCCTGCATTCATTCTAGTC 58.528 50.000 0.00 0.00 0.00 2.59
251 824 8.709386 TGCATTCATTCTAGTCTAACTTTCTC 57.291 34.615 0.00 0.00 0.00 2.87
266 839 8.248945 TCTAACTTTCTCCGTAAAATCTGTAGG 58.751 37.037 0.00 0.00 0.00 3.18
267 840 6.356186 ACTTTCTCCGTAAAATCTGTAGGT 57.644 37.500 0.00 0.00 0.00 3.08
269 842 4.119442 TCTCCGTAAAATCTGTAGGTGC 57.881 45.455 0.00 0.00 0.00 5.01
270 843 3.512329 TCTCCGTAAAATCTGTAGGTGCA 59.488 43.478 0.00 0.00 0.00 4.57
272 845 3.259876 TCCGTAAAATCTGTAGGTGCAGT 59.740 43.478 0.00 0.00 37.70 4.40
276 849 5.515626 CGTAAAATCTGTAGGTGCAGTAGTC 59.484 44.000 0.00 0.00 37.70 2.59
277 850 3.784701 AATCTGTAGGTGCAGTAGTCG 57.215 47.619 0.00 0.00 37.70 4.18
279 852 0.179134 CTGTAGGTGCAGTAGTCGGC 60.179 60.000 0.00 0.00 35.44 5.54
281 854 0.179134 GTAGGTGCAGTAGTCGGCAG 60.179 60.000 0.00 0.00 44.37 4.85
282 855 0.611062 TAGGTGCAGTAGTCGGCAGT 60.611 55.000 0.00 0.00 44.37 4.40
285 858 0.526662 GTGCAGTAGTCGGCAGTAGT 59.473 55.000 0.00 0.00 44.37 2.73
295 886 7.011763 CAGTAGTCGGCAGTAGTAGTACATTAA 59.988 40.741 10.33 0.00 0.00 1.40
483 1092 8.810652 TCATCATCGACGATAAATATGAAACA 57.189 30.769 10.57 0.00 30.90 2.83
484 1093 9.255304 TCATCATCGACGATAAATATGAAACAA 57.745 29.630 10.57 0.00 30.90 2.83
490 1099 9.738832 TCGACGATAAATATGAAACAATACTGA 57.261 29.630 0.00 0.00 0.00 3.41
491 1100 9.995379 CGACGATAAATATGAAACAATACTGAG 57.005 33.333 0.00 0.00 0.00 3.35
493 1102 9.832445 ACGATAAATATGAAACAATACTGAGGT 57.168 29.630 0.00 0.00 0.00 3.85
499 1108 6.759497 ATGAAACAATACTGAGGTTAAGGC 57.241 37.500 0.00 0.00 0.00 4.35
500 1109 5.007682 TGAAACAATACTGAGGTTAAGGCC 58.992 41.667 0.00 0.00 0.00 5.19
501 1110 3.646736 ACAATACTGAGGTTAAGGCCC 57.353 47.619 0.00 0.00 0.00 5.80
502 1111 3.190439 ACAATACTGAGGTTAAGGCCCT 58.810 45.455 0.00 0.00 34.11 5.19
503 1112 3.591977 ACAATACTGAGGTTAAGGCCCTT 59.408 43.478 0.00 0.00 30.60 3.95
504 1113 4.786454 ACAATACTGAGGTTAAGGCCCTTA 59.214 41.667 0.00 0.00 30.60 2.69
505 1114 5.432060 ACAATACTGAGGTTAAGGCCCTTAT 59.568 40.000 3.54 0.00 30.60 1.73
506 1115 3.933861 ACTGAGGTTAAGGCCCTTATG 57.066 47.619 3.54 0.00 30.60 1.90
507 1116 2.509964 ACTGAGGTTAAGGCCCTTATGG 59.490 50.000 3.54 0.00 30.60 2.74
508 1117 2.777692 CTGAGGTTAAGGCCCTTATGGA 59.222 50.000 3.54 0.00 35.39 3.41
509 1118 3.194620 TGAGGTTAAGGCCCTTATGGAA 58.805 45.455 3.54 0.00 35.39 3.53
510 1119 3.202151 TGAGGTTAAGGCCCTTATGGAAG 59.798 47.826 3.54 0.00 35.39 3.46
522 1131 3.891049 CTTATGGAAGGGAGGGAGTTTG 58.109 50.000 0.00 0.00 0.00 2.93
523 1132 1.760405 ATGGAAGGGAGGGAGTTTGT 58.240 50.000 0.00 0.00 0.00 2.83
524 1133 1.529744 TGGAAGGGAGGGAGTTTGTT 58.470 50.000 0.00 0.00 0.00 2.83
525 1134 1.856920 TGGAAGGGAGGGAGTTTGTTT 59.143 47.619 0.00 0.00 0.00 2.83
526 1135 2.158519 TGGAAGGGAGGGAGTTTGTTTC 60.159 50.000 0.00 0.00 0.00 2.78
527 1136 2.158519 GGAAGGGAGGGAGTTTGTTTCA 60.159 50.000 0.00 0.00 0.00 2.69
528 1137 3.500471 GGAAGGGAGGGAGTTTGTTTCAT 60.500 47.826 0.00 0.00 0.00 2.57
529 1138 4.263771 GGAAGGGAGGGAGTTTGTTTCATA 60.264 45.833 0.00 0.00 0.00 2.15
530 1139 5.510430 GAAGGGAGGGAGTTTGTTTCATAT 58.490 41.667 0.00 0.00 0.00 1.78
531 1140 6.353602 GGAAGGGAGGGAGTTTGTTTCATATA 60.354 42.308 0.00 0.00 0.00 0.86
532 1141 6.253946 AGGGAGGGAGTTTGTTTCATATAG 57.746 41.667 0.00 0.00 0.00 1.31
533 1142 5.970640 AGGGAGGGAGTTTGTTTCATATAGA 59.029 40.000 0.00 0.00 0.00 1.98
534 1143 6.447084 AGGGAGGGAGTTTGTTTCATATAGAA 59.553 38.462 0.00 0.00 0.00 2.10
535 1144 7.036863 AGGGAGGGAGTTTGTTTCATATAGAAA 60.037 37.037 0.00 0.00 43.71 2.52
557 1166 9.183368 AGAAATTTAGAAGAGAGCAAAATAGGG 57.817 33.333 0.00 0.00 0.00 3.53
558 1167 8.885693 AAATTTAGAAGAGAGCAAAATAGGGT 57.114 30.769 0.00 0.00 0.00 4.34
559 1168 9.975218 AAATTTAGAAGAGAGCAAAATAGGGTA 57.025 29.630 0.00 0.00 0.00 3.69
560 1169 9.620259 AATTTAGAAGAGAGCAAAATAGGGTAG 57.380 33.333 0.00 0.00 0.00 3.18
561 1170 5.029807 AGAAGAGAGCAAAATAGGGTAGC 57.970 43.478 0.00 0.00 0.00 3.58
562 1171 4.471386 AGAAGAGAGCAAAATAGGGTAGCA 59.529 41.667 0.00 0.00 0.00 3.49
563 1172 4.844349 AGAGAGCAAAATAGGGTAGCAA 57.156 40.909 0.00 0.00 0.00 3.91
564 1173 5.179452 AGAGAGCAAAATAGGGTAGCAAA 57.821 39.130 0.00 0.00 0.00 3.68
565 1174 5.760131 AGAGAGCAAAATAGGGTAGCAAAT 58.240 37.500 0.00 0.00 0.00 2.32
566 1175 6.190587 AGAGAGCAAAATAGGGTAGCAAATT 58.809 36.000 0.00 0.00 0.00 1.82
567 1176 6.096001 AGAGAGCAAAATAGGGTAGCAAATTG 59.904 38.462 0.00 0.00 0.00 2.32
568 1177 5.951747 AGAGCAAAATAGGGTAGCAAATTGA 59.048 36.000 0.00 0.00 0.00 2.57
569 1178 6.608808 AGAGCAAAATAGGGTAGCAAATTGAT 59.391 34.615 0.00 0.00 0.00 2.57
570 1179 7.124750 AGAGCAAAATAGGGTAGCAAATTGATT 59.875 33.333 0.00 0.00 0.00 2.57
571 1180 7.043565 AGCAAAATAGGGTAGCAAATTGATTG 58.956 34.615 0.00 0.00 42.21 2.67
572 1181 6.258507 GCAAAATAGGGTAGCAAATTGATTGG 59.741 38.462 0.00 0.00 39.54 3.16
573 1182 5.535753 AATAGGGTAGCAAATTGATTGGC 57.464 39.130 0.00 0.00 39.54 4.52
574 1183 3.105959 AGGGTAGCAAATTGATTGGCT 57.894 42.857 10.27 10.27 39.54 4.75
575 1184 2.762327 AGGGTAGCAAATTGATTGGCTG 59.238 45.455 14.42 0.00 39.54 4.85
576 1185 2.497273 GGGTAGCAAATTGATTGGCTGT 59.503 45.455 14.42 0.00 39.54 4.40
577 1186 3.055891 GGGTAGCAAATTGATTGGCTGTT 60.056 43.478 14.42 0.00 39.54 3.16
578 1187 4.563374 GGGTAGCAAATTGATTGGCTGTTT 60.563 41.667 14.42 0.00 39.54 2.83
579 1188 5.337169 GGGTAGCAAATTGATTGGCTGTTTA 60.337 40.000 14.42 0.00 39.54 2.01
580 1189 5.576774 GGTAGCAAATTGATTGGCTGTTTAC 59.423 40.000 14.42 5.74 39.54 2.01
581 1190 5.212532 AGCAAATTGATTGGCTGTTTACA 57.787 34.783 4.83 0.00 39.54 2.41
582 1191 5.232463 AGCAAATTGATTGGCTGTTTACAG 58.768 37.500 4.83 5.52 41.84 2.74
583 1192 4.990426 GCAAATTGATTGGCTGTTTACAGT 59.010 37.500 11.23 0.00 41.42 3.55
600 1209 2.708386 AGTCGTACTGAGTCTTGCAC 57.292 50.000 0.00 0.00 0.00 4.57
601 1210 1.069159 AGTCGTACTGAGTCTTGCACG 60.069 52.381 0.00 0.00 0.00 5.34
602 1211 0.240145 TCGTACTGAGTCTTGCACGG 59.760 55.000 5.19 0.00 0.00 4.94
603 1212 1.344942 CGTACTGAGTCTTGCACGGC 61.345 60.000 0.00 0.00 0.00 5.68
604 1213 0.038159 GTACTGAGTCTTGCACGGCT 60.038 55.000 0.00 0.00 0.00 5.52
605 1214 0.038251 TACTGAGTCTTGCACGGCTG 60.038 55.000 0.34 0.00 0.00 4.85
606 1215 1.301244 CTGAGTCTTGCACGGCTGT 60.301 57.895 0.34 0.00 0.00 4.40
607 1216 0.882042 CTGAGTCTTGCACGGCTGTT 60.882 55.000 0.34 0.00 0.00 3.16
608 1217 0.463654 TGAGTCTTGCACGGCTGTTT 60.464 50.000 0.34 0.00 0.00 2.83
609 1218 0.040958 GAGTCTTGCACGGCTGTTTG 60.041 55.000 0.34 0.00 0.00 2.93
610 1219 1.008538 GTCTTGCACGGCTGTTTGG 60.009 57.895 0.00 0.00 0.00 3.28
611 1220 1.153066 TCTTGCACGGCTGTTTGGA 60.153 52.632 0.00 0.00 0.00 3.53
612 1221 0.537143 TCTTGCACGGCTGTTTGGAT 60.537 50.000 0.00 0.00 0.00 3.41
613 1222 0.387622 CTTGCACGGCTGTTTGGATG 60.388 55.000 0.00 0.00 0.00 3.51
614 1223 0.821301 TTGCACGGCTGTTTGGATGA 60.821 50.000 0.00 0.00 0.00 2.92
615 1224 0.821301 TGCACGGCTGTTTGGATGAA 60.821 50.000 0.00 0.00 0.00 2.57
616 1225 0.387239 GCACGGCTGTTTGGATGAAC 60.387 55.000 0.00 0.00 0.00 3.18
617 1226 0.950836 CACGGCTGTTTGGATGAACA 59.049 50.000 0.00 0.00 37.87 3.18
624 1233 3.140325 TGTTTGGATGAACAGAGGTCC 57.860 47.619 0.00 0.00 34.77 4.46
625 1234 2.711009 TGTTTGGATGAACAGAGGTCCT 59.289 45.455 0.00 0.00 34.77 3.85
626 1235 3.138283 TGTTTGGATGAACAGAGGTCCTT 59.862 43.478 0.00 0.00 34.77 3.36
627 1236 3.703001 TTGGATGAACAGAGGTCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
628 1237 2.619931 TGGATGAACAGAGGTCCTTCA 58.380 47.619 0.00 0.00 0.00 3.02
629 1238 3.184628 TGGATGAACAGAGGTCCTTCAT 58.815 45.455 3.81 3.81 37.34 2.57
630 1239 3.054875 TGGATGAACAGAGGTCCTTCATG 60.055 47.826 8.28 3.82 35.27 3.07
631 1240 3.054802 GGATGAACAGAGGTCCTTCATGT 60.055 47.826 8.28 4.39 35.27 3.21
632 1241 4.162320 GGATGAACAGAGGTCCTTCATGTA 59.838 45.833 8.28 0.00 35.27 2.29
633 1242 5.163258 GGATGAACAGAGGTCCTTCATGTAT 60.163 44.000 8.28 0.00 35.27 2.29
634 1243 5.762179 TGAACAGAGGTCCTTCATGTATT 57.238 39.130 0.00 0.00 0.00 1.89
635 1244 5.491070 TGAACAGAGGTCCTTCATGTATTG 58.509 41.667 0.00 0.00 0.00 1.90
636 1245 5.248248 TGAACAGAGGTCCTTCATGTATTGA 59.752 40.000 0.00 0.00 0.00 2.57
637 1246 5.350504 ACAGAGGTCCTTCATGTATTGAG 57.649 43.478 0.00 0.00 35.27 3.02
638 1247 4.163078 ACAGAGGTCCTTCATGTATTGAGG 59.837 45.833 0.00 0.00 35.27 3.86
639 1248 4.406972 CAGAGGTCCTTCATGTATTGAGGA 59.593 45.833 0.00 0.00 33.37 3.71
640 1249 5.032846 AGAGGTCCTTCATGTATTGAGGAA 58.967 41.667 0.00 0.00 35.08 3.36
641 1250 5.669447 AGAGGTCCTTCATGTATTGAGGAAT 59.331 40.000 0.00 0.00 35.08 3.01
642 1251 6.159398 AGAGGTCCTTCATGTATTGAGGAATT 59.841 38.462 0.00 0.00 35.08 2.17
643 1252 6.125029 AGGTCCTTCATGTATTGAGGAATTG 58.875 40.000 0.00 0.00 35.08 2.32
644 1253 5.888161 GGTCCTTCATGTATTGAGGAATTGT 59.112 40.000 0.00 0.00 35.08 2.71
645 1254 6.378280 GGTCCTTCATGTATTGAGGAATTGTT 59.622 38.462 0.00 0.00 35.08 2.83
646 1255 7.556275 GGTCCTTCATGTATTGAGGAATTGTTA 59.444 37.037 0.00 0.00 35.08 2.41
647 1256 8.398665 GTCCTTCATGTATTGAGGAATTGTTAC 58.601 37.037 0.00 0.00 35.08 2.50
648 1257 7.556275 TCCTTCATGTATTGAGGAATTGTTACC 59.444 37.037 0.00 0.00 33.37 2.85
649 1258 7.557719 CCTTCATGTATTGAGGAATTGTTACCT 59.442 37.037 0.00 0.00 39.41 3.08
661 1270 9.315525 GAGGAATTGTTACCTCTAGATTGTAAC 57.684 37.037 24.75 24.75 46.28 2.50
662 1271 8.265764 AGGAATTGTTACCTCTAGATTGTAACC 58.734 37.037 26.59 18.00 42.17 2.85
663 1272 7.498239 GGAATTGTTACCTCTAGATTGTAACCC 59.502 40.741 26.59 20.69 42.17 4.11
664 1273 7.750947 ATTGTTACCTCTAGATTGTAACCCT 57.249 36.000 26.59 17.86 42.17 4.34
665 1274 8.849543 ATTGTTACCTCTAGATTGTAACCCTA 57.150 34.615 26.59 18.47 42.17 3.53
666 1275 8.849543 TTGTTACCTCTAGATTGTAACCCTAT 57.150 34.615 26.59 0.00 42.17 2.57
667 1276 8.849543 TGTTACCTCTAGATTGTAACCCTATT 57.150 34.615 26.59 0.00 42.17 1.73
668 1277 9.940974 TGTTACCTCTAGATTGTAACCCTATTA 57.059 33.333 26.59 14.32 42.17 0.98
695 1304 9.699703 TTTTGAATAAAATTTCCCTTTACCTCG 57.300 29.630 0.00 0.00 31.13 4.63
696 1305 6.859017 TGAATAAAATTTCCCTTTACCTCGC 58.141 36.000 0.00 0.00 0.00 5.03
697 1306 6.434652 TGAATAAAATTTCCCTTTACCTCGCA 59.565 34.615 0.00 0.00 0.00 5.10
698 1307 6.844097 ATAAAATTTCCCTTTACCTCGCAA 57.156 33.333 0.00 0.00 0.00 4.85
699 1308 5.538849 AAAATTTCCCTTTACCTCGCAAA 57.461 34.783 0.00 0.00 0.00 3.68
700 1309 5.538849 AAATTTCCCTTTACCTCGCAAAA 57.461 34.783 0.00 0.00 0.00 2.44
701 1310 5.538849 AATTTCCCTTTACCTCGCAAAAA 57.461 34.783 0.00 0.00 0.00 1.94
823 1442 2.951458 CGGCGAAACCTTCCAACC 59.049 61.111 0.00 0.00 35.61 3.77
824 1443 2.622962 CGGCGAAACCTTCCAACCC 61.623 63.158 0.00 0.00 35.61 4.11
828 1447 1.394618 CGAAACCTTCCAACCCAACA 58.605 50.000 0.00 0.00 0.00 3.33
829 1448 1.751924 CGAAACCTTCCAACCCAACAA 59.248 47.619 0.00 0.00 0.00 2.83
830 1449 2.166664 CGAAACCTTCCAACCCAACAAA 59.833 45.455 0.00 0.00 0.00 2.83
831 1450 3.368531 CGAAACCTTCCAACCCAACAAAA 60.369 43.478 0.00 0.00 0.00 2.44
832 1451 4.580868 GAAACCTTCCAACCCAACAAAAA 58.419 39.130 0.00 0.00 0.00 1.94
833 1452 3.620427 ACCTTCCAACCCAACAAAAAC 57.380 42.857 0.00 0.00 0.00 2.43
834 1453 2.093921 ACCTTCCAACCCAACAAAAACG 60.094 45.455 0.00 0.00 0.00 3.60
835 1454 1.930503 CTTCCAACCCAACAAAAACGC 59.069 47.619 0.00 0.00 0.00 4.84
836 1455 0.175989 TCCAACCCAACAAAAACGCC 59.824 50.000 0.00 0.00 0.00 5.68
837 1456 0.176910 CCAACCCAACAAAAACGCCT 59.823 50.000 0.00 0.00 0.00 5.52
838 1457 1.406205 CCAACCCAACAAAAACGCCTT 60.406 47.619 0.00 0.00 0.00 4.35
839 1458 2.351455 CAACCCAACAAAAACGCCTTT 58.649 42.857 0.00 0.00 0.00 3.11
840 1459 2.017138 ACCCAACAAAAACGCCTTTG 57.983 45.000 7.96 7.96 41.24 2.77
842 1461 1.406205 CCCAACAAAAACGCCTTTGGT 60.406 47.619 12.79 4.93 40.03 3.67
889 1508 0.318614 CGCACACACCAATCCCAAAC 60.319 55.000 0.00 0.00 0.00 2.93
902 1522 1.300853 CCAAACCAAAGCAAGGCCG 60.301 57.895 0.00 0.00 0.00 6.13
935 1555 1.330306 CACAGCGCAAAAATCTTCCG 58.670 50.000 11.47 0.00 0.00 4.30
1114 1768 4.098654 TCTTCCTTTTTGCGTGATTTTCCA 59.901 37.500 0.00 0.00 0.00 3.53
1141 1798 0.445436 CTGATCAACCTGTGCGCTTC 59.555 55.000 9.73 2.14 0.00 3.86
1233 1894 4.442192 GCCCTGTCTGATTCGTCTAATTCT 60.442 45.833 0.00 0.00 0.00 2.40
1268 1930 0.037697 GGGGTTTGAACGATTTGGGC 60.038 55.000 0.00 0.00 0.00 5.36
1399 2065 8.986991 ACTCTACAGGTTCTTCATTCATTCTAT 58.013 33.333 0.00 0.00 0.00 1.98
1401 2067 9.823647 TCTACAGGTTCTTCATTCATTCTATTC 57.176 33.333 0.00 0.00 0.00 1.75
1402 2068 9.605275 CTACAGGTTCTTCATTCATTCTATTCA 57.395 33.333 0.00 0.00 0.00 2.57
1404 2070 9.471702 ACAGGTTCTTCATTCATTCTATTCATT 57.528 29.630 0.00 0.00 0.00 2.57
1405 2071 9.731819 CAGGTTCTTCATTCATTCTATTCATTG 57.268 33.333 0.00 0.00 0.00 2.82
1406 2072 9.690913 AGGTTCTTCATTCATTCTATTCATTGA 57.309 29.630 0.00 0.00 0.00 2.57
1429 2095 2.200373 TTTTCCCTAGCTCAACTGCC 57.800 50.000 0.00 0.00 0.00 4.85
1430 2096 1.064003 TTTCCCTAGCTCAACTGCCA 58.936 50.000 0.00 0.00 0.00 4.92
1431 2097 1.289160 TTCCCTAGCTCAACTGCCAT 58.711 50.000 0.00 0.00 0.00 4.40
1432 2098 1.289160 TCCCTAGCTCAACTGCCATT 58.711 50.000 0.00 0.00 0.00 3.16
1433 2099 1.065199 TCCCTAGCTCAACTGCCATTG 60.065 52.381 0.00 0.00 0.00 2.82
1434 2100 1.386533 CCTAGCTCAACTGCCATTGG 58.613 55.000 0.00 0.00 0.00 3.16
1435 2101 1.065199 CCTAGCTCAACTGCCATTGGA 60.065 52.381 6.95 0.00 0.00 3.53
1436 2102 2.422519 CCTAGCTCAACTGCCATTGGAT 60.423 50.000 6.95 0.00 0.00 3.41
1455 2121 1.167851 TTGACATGCTTGGTGCTAGC 58.832 50.000 8.10 8.10 43.37 3.42
1456 2122 0.325933 TGACATGCTTGGTGCTAGCT 59.674 50.000 17.23 0.00 43.37 3.32
1457 2123 1.271543 TGACATGCTTGGTGCTAGCTT 60.272 47.619 17.23 0.00 43.37 3.74
1458 2124 1.815003 GACATGCTTGGTGCTAGCTTT 59.185 47.619 17.23 0.00 43.37 3.51
1459 2125 2.229784 GACATGCTTGGTGCTAGCTTTT 59.770 45.455 17.23 0.00 43.37 2.27
1460 2126 3.420893 ACATGCTTGGTGCTAGCTTTTA 58.579 40.909 17.23 0.00 43.37 1.52
1465 2131 5.949735 TGCTTGGTGCTAGCTTTTATTTAC 58.050 37.500 17.23 2.48 43.37 2.01
1475 2141 7.335924 TGCTAGCTTTTATTTACTGTTGGGTAG 59.664 37.037 17.23 0.00 0.00 3.18
1480 2146 9.006839 GCTTTTATTTACTGTTGGGTAGTTAGT 57.993 33.333 0.00 0.00 0.00 2.24
1490 2156 2.901839 TGGGTAGTTAGTTCTGGGTGTC 59.098 50.000 0.00 0.00 0.00 3.67
1496 2168 6.380560 GGTAGTTAGTTCTGGGTGTCTTAGAT 59.619 42.308 0.00 0.00 0.00 1.98
1497 2169 6.532988 AGTTAGTTCTGGGTGTCTTAGATC 57.467 41.667 0.00 0.00 0.00 2.75
1498 2170 6.257586 AGTTAGTTCTGGGTGTCTTAGATCT 58.742 40.000 0.00 0.00 0.00 2.75
1499 2171 6.726764 AGTTAGTTCTGGGTGTCTTAGATCTT 59.273 38.462 0.00 0.00 0.00 2.40
1500 2172 7.235812 AGTTAGTTCTGGGTGTCTTAGATCTTT 59.764 37.037 0.00 0.00 0.00 2.52
1501 2173 8.529476 GTTAGTTCTGGGTGTCTTAGATCTTTA 58.471 37.037 0.00 0.00 0.00 1.85
1502 2174 7.176589 AGTTCTGGGTGTCTTAGATCTTTAG 57.823 40.000 0.00 0.00 0.00 1.85
1515 2187 8.475639 TCTTAGATCTTTAGCACTAACGGATTT 58.524 33.333 0.00 4.76 0.00 2.17
1525 2197 5.183140 AGCACTAACGGATTTTATGCTGTTT 59.817 36.000 0.00 0.00 40.29 2.83
1543 2224 3.002246 TGTTTGAGATGTGAACTTGCGTC 59.998 43.478 0.00 0.00 0.00 5.19
1547 2228 3.814842 TGAGATGTGAACTTGCGTCAAAT 59.185 39.130 0.00 0.00 0.00 2.32
1549 2230 3.814842 AGATGTGAACTTGCGTCAAATCA 59.185 39.130 7.21 5.31 32.14 2.57
1551 2232 4.566545 TGTGAACTTGCGTCAAATCAAT 57.433 36.364 8.31 0.00 0.00 2.57
1552 2233 4.930963 TGTGAACTTGCGTCAAATCAATT 58.069 34.783 8.31 0.00 0.00 2.32
1553 2234 5.347342 TGTGAACTTGCGTCAAATCAATTT 58.653 33.333 8.31 0.00 0.00 1.82
1554 2235 5.231779 TGTGAACTTGCGTCAAATCAATTTG 59.768 36.000 8.81 8.81 46.39 2.32
1555 2236 4.208873 TGAACTTGCGTCAAATCAATTTGC 59.791 37.500 10.02 5.55 45.06 3.68
1556 2237 2.725723 ACTTGCGTCAAATCAATTTGCG 59.274 40.909 18.94 18.94 45.06 4.85
1564 2245 5.399301 CGTCAAATCAATTTGCGAAGTTCTT 59.601 36.000 18.68 0.00 45.06 2.52
1568 2249 8.914654 TCAAATCAATTTGCGAAGTTCTTATTG 58.085 29.630 10.02 5.75 45.06 1.90
1595 2276 7.226720 TCTGGTTAGTGTTCTGAATTCTTGAAC 59.773 37.037 24.61 24.61 40.09 3.18
1596 2277 6.826231 TGGTTAGTGTTCTGAATTCTTGAACA 59.174 34.615 27.52 27.52 44.96 3.18
1601 2282 6.861065 TGTTCTGAATTCTTGAACACTACC 57.139 37.500 27.52 12.91 43.15 3.18
1602 2283 6.591935 TGTTCTGAATTCTTGAACACTACCT 58.408 36.000 27.52 0.00 43.15 3.08
1603 2284 6.706270 TGTTCTGAATTCTTGAACACTACCTC 59.294 38.462 27.52 11.98 43.15 3.85
1604 2285 5.794894 TCTGAATTCTTGAACACTACCTCC 58.205 41.667 7.05 0.00 0.00 4.30
1605 2286 4.566004 TGAATTCTTGAACACTACCTCCG 58.434 43.478 7.05 0.00 0.00 4.63
1606 2287 4.039973 TGAATTCTTGAACACTACCTCCGT 59.960 41.667 7.05 0.00 0.00 4.69
1607 2288 4.618920 ATTCTTGAACACTACCTCCGTT 57.381 40.909 0.00 0.00 0.00 4.44
1608 2289 3.655276 TCTTGAACACTACCTCCGTTC 57.345 47.619 0.00 0.00 39.56 3.95
1609 2290 2.298163 TCTTGAACACTACCTCCGTTCC 59.702 50.000 0.00 0.00 38.59 3.62
1610 2291 2.005370 TGAACACTACCTCCGTTCCT 57.995 50.000 0.00 0.00 38.59 3.36
1611 2292 3.159213 TGAACACTACCTCCGTTCCTA 57.841 47.619 0.00 0.00 38.59 2.94
1612 2293 3.499338 TGAACACTACCTCCGTTCCTAA 58.501 45.455 0.00 0.00 38.59 2.69
1613 2294 3.896888 TGAACACTACCTCCGTTCCTAAA 59.103 43.478 0.00 0.00 38.59 1.85
1614 2295 4.344679 TGAACACTACCTCCGTTCCTAAAA 59.655 41.667 0.00 0.00 38.59 1.52
1615 2296 5.012354 TGAACACTACCTCCGTTCCTAAAAT 59.988 40.000 0.00 0.00 38.59 1.82
1616 2297 6.211184 TGAACACTACCTCCGTTCCTAAAATA 59.789 38.462 0.00 0.00 38.59 1.40
1617 2298 6.803366 ACACTACCTCCGTTCCTAAAATAT 57.197 37.500 0.00 0.00 0.00 1.28
1618 2299 7.902920 ACACTACCTCCGTTCCTAAAATATA 57.097 36.000 0.00 0.00 0.00 0.86
1619 2300 8.310122 ACACTACCTCCGTTCCTAAAATATAA 57.690 34.615 0.00 0.00 0.00 0.98
1620 2301 8.419442 ACACTACCTCCGTTCCTAAAATATAAG 58.581 37.037 0.00 0.00 0.00 1.73
1621 2302 8.636213 CACTACCTCCGTTCCTAAAATATAAGA 58.364 37.037 0.00 0.00 0.00 2.10
1622 2303 9.377238 ACTACCTCCGTTCCTAAAATATAAGAT 57.623 33.333 0.00 0.00 0.00 2.40
1623 2304 9.640963 CTACCTCCGTTCCTAAAATATAAGATG 57.359 37.037 0.00 0.00 0.00 2.90
1624 2305 8.030913 ACCTCCGTTCCTAAAATATAAGATGT 57.969 34.615 0.00 0.00 0.00 3.06
1625 2306 8.491958 ACCTCCGTTCCTAAAATATAAGATGTT 58.508 33.333 0.00 0.00 0.00 2.71
1626 2307 9.338622 CCTCCGTTCCTAAAATATAAGATGTTT 57.661 33.333 0.00 0.00 0.00 2.83
1660 2341 8.939201 TTAATGCACATTAAAATGGGTACATG 57.061 30.769 12.28 0.00 41.86 3.21
1661 2342 5.336150 TGCACATTAAAATGGGTACATGG 57.664 39.130 6.79 0.00 41.86 3.66
1662 2343 4.161189 TGCACATTAAAATGGGTACATGGG 59.839 41.667 6.79 0.00 41.86 4.00
1663 2344 4.404073 GCACATTAAAATGGGTACATGGGA 59.596 41.667 6.79 0.00 41.86 4.37
1664 2345 5.105146 GCACATTAAAATGGGTACATGGGAA 60.105 40.000 6.79 0.00 41.86 3.97
1665 2346 6.407979 GCACATTAAAATGGGTACATGGGAAT 60.408 38.462 6.79 0.00 41.86 3.01
1666 2347 7.201956 GCACATTAAAATGGGTACATGGGAATA 60.202 37.037 6.79 0.00 41.86 1.75
1667 2348 8.700051 CACATTAAAATGGGTACATGGGAATAA 58.300 33.333 7.56 0.00 40.70 1.40
1668 2349 9.273137 ACATTAAAATGGGTACATGGGAATAAA 57.727 29.630 7.56 0.00 40.70 1.40
1699 2380 8.383318 GCTAAAGCATCTTATATTCAGGAACA 57.617 34.615 0.00 0.00 41.59 3.18
1700 2381 8.502387 GCTAAAGCATCTTATATTCAGGAACAG 58.498 37.037 0.00 0.00 41.59 3.16
1701 2382 9.770097 CTAAAGCATCTTATATTCAGGAACAGA 57.230 33.333 0.00 0.00 0.00 3.41
1702 2383 8.674263 AAAGCATCTTATATTCAGGAACAGAG 57.326 34.615 0.00 0.00 0.00 3.35
1703 2384 6.767456 AGCATCTTATATTCAGGAACAGAGG 58.233 40.000 0.00 0.00 0.00 3.69
1704 2385 5.936956 GCATCTTATATTCAGGAACAGAGGG 59.063 44.000 0.00 0.00 0.00 4.30
1705 2386 6.239714 GCATCTTATATTCAGGAACAGAGGGA 60.240 42.308 0.00 0.00 0.00 4.20
1706 2387 6.985653 TCTTATATTCAGGAACAGAGGGAG 57.014 41.667 0.00 0.00 0.00 4.30
1712 2393 2.111972 TCAGGAACAGAGGGAGTAGGTT 59.888 50.000 0.00 0.00 0.00 3.50
1713 2394 2.907042 CAGGAACAGAGGGAGTAGGTTT 59.093 50.000 0.00 0.00 0.00 3.27
1810 2510 6.665992 TGAGTTACTCAGGTCAACATAAGT 57.334 37.500 11.42 0.00 35.39 2.24
1868 2685 1.362224 AACATCCTGCTGGTAGGTGT 58.638 50.000 9.73 7.94 38.99 4.16
1907 2724 4.269183 TGCGATTACAGATGGTTGGATTT 58.731 39.130 0.00 0.00 0.00 2.17
1908 2725 4.096231 TGCGATTACAGATGGTTGGATTTG 59.904 41.667 0.00 0.00 0.00 2.32
1912 2729 6.527722 CGATTACAGATGGTTGGATTTGTTTG 59.472 38.462 0.00 0.00 0.00 2.93
1913 2730 4.605640 ACAGATGGTTGGATTTGTTTGG 57.394 40.909 0.00 0.00 0.00 3.28
1990 2834 6.480320 CACTTGGTTTGCACTACCTCTATATC 59.520 42.308 16.04 0.00 36.60 1.63
2041 3026 6.948589 AGACCTAGTTCAGAGGGAAAAATAC 58.051 40.000 0.00 0.00 38.52 1.89
2088 3073 4.691860 GCATGTCAGTGCATTAAGAGTT 57.308 40.909 0.00 0.00 44.43 3.01
2089 3074 5.051891 GCATGTCAGTGCATTAAGAGTTT 57.948 39.130 0.00 0.00 44.43 2.66
2090 3075 6.182039 GCATGTCAGTGCATTAAGAGTTTA 57.818 37.500 0.00 0.00 44.43 2.01
2091 3076 6.611381 GCATGTCAGTGCATTAAGAGTTTAA 58.389 36.000 0.00 0.00 44.43 1.52
2092 3077 6.744537 GCATGTCAGTGCATTAAGAGTTTAAG 59.255 38.462 0.00 0.00 44.43 1.85
2093 3078 7.361201 GCATGTCAGTGCATTAAGAGTTTAAGA 60.361 37.037 0.00 0.00 44.43 2.10
2184 3170 2.158813 TGTCCAAGTCCAGAGGAAACAC 60.159 50.000 0.00 0.00 31.38 3.32
2210 3196 5.770162 ACTTTTGCTAAGTTATGGCTTCACT 59.230 36.000 0.00 0.00 0.00 3.41
2211 3197 6.940298 ACTTTTGCTAAGTTATGGCTTCACTA 59.060 34.615 0.00 0.00 0.00 2.74
2212 3198 7.447238 ACTTTTGCTAAGTTATGGCTTCACTAA 59.553 33.333 0.00 0.00 0.00 2.24
2213 3199 7.938140 TTTGCTAAGTTATGGCTTCACTAAT 57.062 32.000 0.00 0.00 0.00 1.73
2214 3200 6.925610 TGCTAAGTTATGGCTTCACTAATG 57.074 37.500 0.00 0.00 0.00 1.90
2215 3201 6.414732 TGCTAAGTTATGGCTTCACTAATGT 58.585 36.000 0.00 0.00 0.00 2.71
2216 3202 6.538742 TGCTAAGTTATGGCTTCACTAATGTC 59.461 38.462 0.00 0.00 0.00 3.06
2217 3203 6.538742 GCTAAGTTATGGCTTCACTAATGTCA 59.461 38.462 0.00 0.00 0.00 3.58
2403 3391 9.416284 TGATGAACACATAGGTAGTATTACTCA 57.584 33.333 0.00 0.00 0.00 3.41
2424 3413 3.553828 AACTTATGGACCATGTACCGG 57.446 47.619 17.73 0.00 0.00 5.28
2425 3414 2.474112 ACTTATGGACCATGTACCGGT 58.526 47.619 17.73 13.98 40.30 5.28
2426 3415 3.645434 ACTTATGGACCATGTACCGGTA 58.355 45.455 17.73 11.16 36.69 4.02
2517 3507 1.818642 ATCTGCTGGCACTCAACTTC 58.181 50.000 0.00 0.00 0.00 3.01
2545 3535 4.634184 TCTGGACTAGAGTATTGAACGC 57.366 45.455 0.00 0.00 0.00 4.84
2563 3553 1.828768 CTCAGAGACCCTGCCATCC 59.171 63.158 0.00 0.00 42.62 3.51
2594 3584 2.233271 ACAGGACAGCAATGAAACAGG 58.767 47.619 0.00 0.00 0.00 4.00
2603 3593 2.035066 GCAATGAAACAGGCTGTTCAGT 59.965 45.455 31.24 24.32 40.14 3.41
2620 3610 0.905357 AGTTGCGTTCTCTATGGCCT 59.095 50.000 3.32 0.00 0.00 5.19
2727 3717 3.829601 ACATTTGTCTTTTTATCCCGCCA 59.170 39.130 0.00 0.00 0.00 5.69
2775 3767 7.703058 AACAAATGGATATTTTTCGGAGACT 57.297 32.000 0.00 0.00 34.34 3.24
2861 3941 7.901029 TGGTATGCTGGTTGATTTGATTTTAA 58.099 30.769 0.00 0.00 0.00 1.52
3035 4125 7.221838 ACAAATTTGAACAACATTCTGTTACGG 59.778 33.333 24.64 0.00 38.77 4.02
3048 4139 7.223387 ACATTCTGTTACGGTTCGTTAATATCC 59.777 37.037 0.00 0.00 41.54 2.59
3113 4204 3.871006 CAGTGAAGTAACTCTGTGTGCAA 59.129 43.478 0.00 0.00 0.00 4.08
3295 4391 3.553508 GCAAAGAAGCATGGATTGTGTGT 60.554 43.478 0.00 0.00 0.00 3.72
3313 4457 8.664211 TTGTGTGTGTGTAGTTAATCATTACA 57.336 30.769 0.00 0.00 0.00 2.41
3481 4633 0.836606 TTCAGAGTCTTGGTGTGGCA 59.163 50.000 0.00 0.00 0.00 4.92
3603 4755 2.859165 AGTAGCTTGCTTAGTTGCCA 57.141 45.000 0.00 0.00 0.00 4.92
3615 4767 5.709631 TGCTTAGTTGCCAGTCAATCAAATA 59.290 36.000 0.00 0.00 36.99 1.40
3651 4803 7.122715 TGTATGGTATATTGAAAGTTTGGCCT 58.877 34.615 3.32 0.00 0.00 5.19
3659 4811 3.565307 TGAAAGTTTGGCCTGTCATTCT 58.435 40.909 3.32 0.00 0.00 2.40
3660 4812 3.318839 TGAAAGTTTGGCCTGTCATTCTG 59.681 43.478 3.32 0.00 0.00 3.02
3790 4942 6.258507 ACAAAGTGCCTATTTTTCTTGCTTTG 59.741 34.615 0.00 0.00 43.13 2.77
3838 4996 8.488651 TGAGATTATTCGTCTTTTAGGTTTCC 57.511 34.615 0.00 0.00 0.00 3.13
4050 5210 6.902771 TCTCTCTATTATTTTCCTCGGAGG 57.097 41.667 18.25 18.25 36.46 4.30
4188 5350 2.551270 CAACAACGCTCGTCAGGC 59.449 61.111 0.00 0.00 0.00 4.85
4224 5386 3.892588 AGATACGGATCCTCCTCAGTTTC 59.107 47.826 10.75 4.10 33.30 2.78
4238 5400 1.879380 CAGTTTCGATTGGCTTGGTGA 59.121 47.619 0.00 0.00 0.00 4.02
4297 5459 6.881065 AGTTTGAAAGCTGCTATCTTGTATCA 59.119 34.615 0.90 0.00 0.00 2.15
4383 5545 9.605275 TCATAACTTCTGATTCTTTGTATGAGG 57.395 33.333 0.00 0.00 0.00 3.86
4588 5754 9.799106 CTATATGGTTCATCTTTTACCCATCTT 57.201 33.333 0.00 0.00 34.64 2.40
4592 5758 7.666623 TGGTTCATCTTTTACCCATCTTTTTC 58.333 34.615 0.00 0.00 0.00 2.29
4593 5759 7.288852 TGGTTCATCTTTTACCCATCTTTTTCA 59.711 33.333 0.00 0.00 0.00 2.69
4604 5772 4.441913 CCCATCTTTTTCATTCCATTCCCG 60.442 45.833 0.00 0.00 0.00 5.14
4636 5812 5.359860 TGGTATATATGATCAGCCACTACGG 59.640 44.000 0.09 0.00 38.11 4.02
4644 5820 3.965379 TCAGCCACTACGGTTTTCATA 57.035 42.857 0.00 0.00 36.97 2.15
4675 5851 1.259507 CATGCTGTTGTTTGCTGCAAC 59.740 47.619 15.72 10.84 44.50 4.17
4679 5855 2.462889 CTGTTGTTTGCTGCAACGATT 58.537 42.857 15.72 0.00 46.48 3.34
4681 5857 2.857152 TGTTGTTTGCTGCAACGATTTC 59.143 40.909 15.72 4.78 46.48 2.17
4682 5858 1.752753 TGTTTGCTGCAACGATTTCG 58.247 45.000 15.72 0.00 46.33 3.46
4683 5859 1.332065 TGTTTGCTGCAACGATTTCGA 59.668 42.857 15.72 0.00 43.02 3.71
4684 5860 2.031245 TGTTTGCTGCAACGATTTCGAT 60.031 40.909 15.72 0.00 43.02 3.59
4685 5861 2.245795 TTGCTGCAACGATTTCGATG 57.754 45.000 11.69 6.42 43.60 3.84
4686 5862 0.447406 TGCTGCAACGATTTCGATGG 59.553 50.000 7.01 0.00 41.52 3.51
4687 5863 0.447801 GCTGCAACGATTTCGATGGT 59.552 50.000 7.01 0.00 41.52 3.55
4688 5864 1.135689 GCTGCAACGATTTCGATGGTT 60.136 47.619 7.01 0.00 41.52 3.67
4689 5865 2.668279 GCTGCAACGATTTCGATGGTTT 60.668 45.455 7.01 0.00 41.52 3.27
4690 5866 3.163594 CTGCAACGATTTCGATGGTTTC 58.836 45.455 7.01 0.00 41.52 2.78
4720 5896 2.746362 GACTTTGCAGATCCCACTCTTG 59.254 50.000 0.00 0.00 0.00 3.02
4742 5918 1.279271 GTGCTGTGTAGGTCCCTGATT 59.721 52.381 0.00 0.00 0.00 2.57
4787 5963 4.201990 GGATGGATCATGCTCACTTTCAAC 60.202 45.833 0.00 0.00 0.00 3.18
4830 6006 6.005823 TGATTTCTGTTGTTGACATCTCCAT 58.994 36.000 0.00 0.00 37.69 3.41
4831 6007 5.947228 TTTCTGTTGTTGACATCTCCATC 57.053 39.130 0.00 0.00 37.69 3.51
4832 6008 3.588955 TCTGTTGTTGACATCTCCATCG 58.411 45.455 0.00 0.00 37.69 3.84
4833 6009 3.258123 TCTGTTGTTGACATCTCCATCGA 59.742 43.478 0.00 0.00 37.69 3.59
4834 6010 3.588955 TGTTGTTGACATCTCCATCGAG 58.411 45.455 0.00 0.00 33.42 4.04
4855 6031 3.917444 GAGCATACTCTTTCTTTTCGCG 58.083 45.455 0.00 0.00 40.03 5.87
4856 6032 2.673368 AGCATACTCTTTCTTTTCGCGG 59.327 45.455 6.13 0.00 0.00 6.46
4857 6033 2.671396 GCATACTCTTTCTTTTCGCGGA 59.329 45.455 6.13 0.00 0.00 5.54
4858 6034 3.309954 GCATACTCTTTCTTTTCGCGGAT 59.690 43.478 6.13 0.00 0.00 4.18
4859 6035 4.551024 GCATACTCTTTCTTTTCGCGGATC 60.551 45.833 6.13 0.00 0.00 3.36
4860 6036 2.347731 ACTCTTTCTTTTCGCGGATCC 58.652 47.619 6.13 0.00 0.00 3.36
4861 6037 2.289444 ACTCTTTCTTTTCGCGGATCCA 60.289 45.455 13.41 0.00 0.00 3.41
4898 6078 4.563184 CGACTACTCTGCCATTTGAACTAC 59.437 45.833 0.00 0.00 0.00 2.73
4900 6080 5.725362 ACTACTCTGCCATTTGAACTACTC 58.275 41.667 0.00 0.00 0.00 2.59
4901 6081 4.623932 ACTCTGCCATTTGAACTACTCA 57.376 40.909 0.00 0.00 0.00 3.41
4923 6103 2.125106 GCCTTTCCCGTCAGCGAT 60.125 61.111 0.00 0.00 41.33 4.58
4944 6124 3.162448 GCATGTGCCCAAATGCAAT 57.838 47.368 16.49 0.00 46.75 3.56
4957 6137 4.142403 CCAAATGCAATACGACCAACTCAT 60.142 41.667 0.00 0.00 0.00 2.90
4958 6138 5.065859 CCAAATGCAATACGACCAACTCATA 59.934 40.000 0.00 0.00 0.00 2.15
4996 6178 2.915349 AGCAGCAACATCTGGTCTATG 58.085 47.619 0.00 0.00 40.40 2.23
4999 6181 3.064545 GCAGCAACATCTGGTCTATGTTC 59.935 47.826 0.00 0.00 43.84 3.18
5107 6289 3.733224 CGATCAGAATTAGAAGCCACTCG 59.267 47.826 0.00 0.00 0.00 4.18
5126 6308 0.313987 GCCAAAAGTTGCGGTAGCTT 59.686 50.000 0.00 0.00 45.42 3.74
5130 6312 3.125316 CCAAAAGTTGCGGTAGCTTCTAG 59.875 47.826 0.00 0.00 45.42 2.43
5131 6313 2.011540 AAGTTGCGGTAGCTTCTAGC 57.988 50.000 0.00 0.00 45.42 3.42
5173 6355 3.907458 TCCAAACTGGACCGGTTTT 57.093 47.368 25.91 11.02 42.67 2.43
5200 6382 2.910977 GTTTCAGAAGTTAGGAGGGGGA 59.089 50.000 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.450583 TACGCTAGCTCACTGGAACG 59.549 55.000 13.93 0.00 0.00 3.95
1 2 2.873133 ATACGCTAGCTCACTGGAAC 57.127 50.000 13.93 0.00 0.00 3.62
2 3 4.142038 TCATATACGCTAGCTCACTGGAA 58.858 43.478 13.93 0.00 0.00 3.53
3 4 3.751518 TCATATACGCTAGCTCACTGGA 58.248 45.455 13.93 1.05 0.00 3.86
4 5 4.710423 ATCATATACGCTAGCTCACTGG 57.290 45.455 13.93 0.00 0.00 4.00
5 6 8.148807 AGTATATCATATACGCTAGCTCACTG 57.851 38.462 13.93 4.17 0.00 3.66
7 8 9.790389 AAAAGTATATCATATACGCTAGCTCAC 57.210 33.333 13.93 0.00 0.00 3.51
10 11 9.804758 GGAAAAAGTATATCATATACGCTAGCT 57.195 33.333 13.93 2.46 0.00 3.32
11 12 9.582431 TGGAAAAAGTATATCATATACGCTAGC 57.418 33.333 4.06 4.06 0.00 3.42
47 48 9.719355 TTGTAAACAGATTCTGAATGCTACTTA 57.281 29.630 20.33 4.10 35.18 2.24
69 70 0.470766 ACCGACCAGCACCTTTTGTA 59.529 50.000 0.00 0.00 0.00 2.41
81 82 1.098712 GGTCTTGCACAAACCGACCA 61.099 55.000 12.82 0.00 42.77 4.02
91 92 1.668751 TGAAACTCAACGGTCTTGCAC 59.331 47.619 0.00 0.00 0.00 4.57
113 114 1.264557 TGGCATGTAACGGAAACAACG 59.735 47.619 0.00 0.00 37.36 4.10
115 116 4.592485 AATTGGCATGTAACGGAAACAA 57.408 36.364 0.00 0.00 0.00 2.83
120 121 6.707440 ATATGAAAATTGGCATGTAACGGA 57.293 33.333 0.00 0.00 0.00 4.69
121 122 8.914654 CAATATATGAAAATTGGCATGTAACGG 58.085 33.333 0.00 0.00 30.93 4.44
122 123 9.676195 TCAATATATGAAAATTGGCATGTAACG 57.324 29.630 0.00 0.00 34.30 3.18
124 125 9.695526 GCTCAATATATGAAAATTGGCATGTAA 57.304 29.630 0.00 0.00 37.67 2.41
125 126 9.081204 AGCTCAATATATGAAAATTGGCATGTA 57.919 29.630 0.00 2.77 37.67 2.29
126 127 7.959175 AGCTCAATATATGAAAATTGGCATGT 58.041 30.769 0.00 0.88 37.67 3.21
127 128 9.917129 TTAGCTCAATATATGAAAATTGGCATG 57.083 29.630 0.00 0.00 37.67 4.06
128 129 9.918630 GTTAGCTCAATATATGAAAATTGGCAT 57.081 29.630 0.00 0.00 37.67 4.40
129 130 8.911965 TGTTAGCTCAATATATGAAAATTGGCA 58.088 29.630 0.00 0.00 37.67 4.92
130 131 9.748708 TTGTTAGCTCAATATATGAAAATTGGC 57.251 29.630 0.00 0.00 37.67 4.52
141 142 9.899661 ACACCTAATGTTTGTTAGCTCAATATA 57.100 29.630 0.00 0.00 38.98 0.86
142 143 8.677300 CACACCTAATGTTTGTTAGCTCAATAT 58.323 33.333 0.00 0.00 40.64 1.28
178 179 0.106619 ACACACCTACCCCGCAAAAA 60.107 50.000 0.00 0.00 0.00 1.94
179 180 0.535553 GACACACCTACCCCGCAAAA 60.536 55.000 0.00 0.00 0.00 2.44
180 181 1.071814 GACACACCTACCCCGCAAA 59.928 57.895 0.00 0.00 0.00 3.68
182 183 1.485294 ATTGACACACCTACCCCGCA 61.485 55.000 0.00 0.00 0.00 5.69
184 185 2.194201 AAATTGACACACCTACCCCG 57.806 50.000 0.00 0.00 0.00 5.73
185 186 3.442625 GCTAAAATTGACACACCTACCCC 59.557 47.826 0.00 0.00 0.00 4.95
186 187 3.442625 GGCTAAAATTGACACACCTACCC 59.557 47.826 0.00 0.00 0.00 3.69
187 188 4.332828 AGGCTAAAATTGACACACCTACC 58.667 43.478 0.00 0.00 0.00 3.18
188 189 5.001232 TGAGGCTAAAATTGACACACCTAC 58.999 41.667 0.00 0.00 0.00 3.18
189 190 5.235850 TGAGGCTAAAATTGACACACCTA 57.764 39.130 0.00 0.00 0.00 3.08
190 191 4.098914 TGAGGCTAAAATTGACACACCT 57.901 40.909 0.00 0.00 0.00 4.00
191 192 4.846779 TTGAGGCTAAAATTGACACACC 57.153 40.909 0.00 0.00 0.00 4.16
192 193 4.982295 GGTTTGAGGCTAAAATTGACACAC 59.018 41.667 0.00 0.00 0.00 3.82
193 194 4.646945 TGGTTTGAGGCTAAAATTGACACA 59.353 37.500 0.00 0.00 0.00 3.72
194 195 5.009610 TCTGGTTTGAGGCTAAAATTGACAC 59.990 40.000 0.00 0.00 0.00 3.67
196 197 5.461526 GTCTGGTTTGAGGCTAAAATTGAC 58.538 41.667 0.00 6.05 0.00 3.18
198 199 4.215399 TCGTCTGGTTTGAGGCTAAAATTG 59.785 41.667 0.00 0.00 0.00 2.32
202 771 2.549349 GGTCGTCTGGTTTGAGGCTAAA 60.549 50.000 0.00 0.00 0.00 1.85
209 778 1.752198 CAGGGGTCGTCTGGTTTGA 59.248 57.895 0.00 0.00 0.00 2.69
212 781 1.779061 AATGCAGGGGTCGTCTGGTT 61.779 55.000 0.00 0.00 33.16 3.67
229 798 8.068892 ACGGAGAAAGTTAGACTAGAATGAAT 57.931 34.615 0.00 0.00 0.00 2.57
238 811 7.668492 ACAGATTTTACGGAGAAAGTTAGACT 58.332 34.615 0.00 0.00 0.00 3.24
240 813 8.248945 CCTACAGATTTTACGGAGAAAGTTAGA 58.751 37.037 0.00 0.00 0.00 2.10
241 814 8.033626 ACCTACAGATTTTACGGAGAAAGTTAG 58.966 37.037 0.00 0.00 0.00 2.34
251 824 3.596214 ACTGCACCTACAGATTTTACGG 58.404 45.455 0.00 0.00 40.25 4.02
266 839 0.526662 ACTACTGCCGACTACTGCAC 59.473 55.000 0.00 0.00 33.15 4.57
267 840 2.014857 CTACTACTGCCGACTACTGCA 58.985 52.381 0.00 0.00 35.21 4.41
269 842 4.186926 TGTACTACTACTGCCGACTACTG 58.813 47.826 0.00 0.00 0.00 2.74
270 843 4.478206 TGTACTACTACTGCCGACTACT 57.522 45.455 0.00 0.00 0.00 2.57
272 845 7.173907 GGATTAATGTACTACTACTGCCGACTA 59.826 40.741 0.00 0.00 0.00 2.59
276 849 5.243283 AGGGATTAATGTACTACTACTGCCG 59.757 44.000 0.00 0.00 0.00 5.69
277 850 6.667558 AGGGATTAATGTACTACTACTGCC 57.332 41.667 0.00 0.00 0.00 4.85
281 854 9.761504 GGAAAGAAGGGATTAATGTACTACTAC 57.238 37.037 0.00 0.00 0.00 2.73
282 855 9.496710 TGGAAAGAAGGGATTAATGTACTACTA 57.503 33.333 0.00 0.00 0.00 1.82
285 858 7.092623 TGCTGGAAAGAAGGGATTAATGTACTA 60.093 37.037 0.00 0.00 0.00 1.82
295 886 1.065854 CGAGTGCTGGAAAGAAGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
477 1086 5.007682 GGCCTTAACCTCAGTATTGTTTCA 58.992 41.667 0.00 0.00 0.00 2.69
478 1087 4.398358 GGGCCTTAACCTCAGTATTGTTTC 59.602 45.833 0.84 0.00 0.00 2.78
479 1088 4.044191 AGGGCCTTAACCTCAGTATTGTTT 59.956 41.667 0.00 0.00 31.01 2.83
482 1091 3.933861 AGGGCCTTAACCTCAGTATTG 57.066 47.619 0.00 0.00 31.01 1.90
483 1092 5.163088 CCATAAGGGCCTTAACCTCAGTATT 60.163 44.000 28.61 6.50 37.35 1.89
484 1093 4.351111 CCATAAGGGCCTTAACCTCAGTAT 59.649 45.833 28.61 8.29 37.35 2.12
485 1094 3.714798 CCATAAGGGCCTTAACCTCAGTA 59.285 47.826 28.61 6.06 37.35 2.74
486 1095 2.509964 CCATAAGGGCCTTAACCTCAGT 59.490 50.000 28.61 8.74 37.35 3.41
487 1096 2.777692 TCCATAAGGGCCTTAACCTCAG 59.222 50.000 28.61 13.87 37.35 3.35
488 1097 2.853430 TCCATAAGGGCCTTAACCTCA 58.147 47.619 28.61 8.43 37.35 3.86
489 1098 3.821748 CTTCCATAAGGGCCTTAACCTC 58.178 50.000 28.61 0.00 37.35 3.85
490 1099 3.953542 CTTCCATAAGGGCCTTAACCT 57.046 47.619 28.61 11.01 40.96 3.50
501 1110 3.267031 ACAAACTCCCTCCCTTCCATAAG 59.733 47.826 0.00 0.00 0.00 1.73
502 1111 3.265489 ACAAACTCCCTCCCTTCCATAA 58.735 45.455 0.00 0.00 0.00 1.90
503 1112 2.929301 ACAAACTCCCTCCCTTCCATA 58.071 47.619 0.00 0.00 0.00 2.74
504 1113 1.760405 ACAAACTCCCTCCCTTCCAT 58.240 50.000 0.00 0.00 0.00 3.41
505 1114 1.529744 AACAAACTCCCTCCCTTCCA 58.470 50.000 0.00 0.00 0.00 3.53
506 1115 2.158519 TGAAACAAACTCCCTCCCTTCC 60.159 50.000 0.00 0.00 0.00 3.46
507 1116 3.223674 TGAAACAAACTCCCTCCCTTC 57.776 47.619 0.00 0.00 0.00 3.46
508 1117 3.903530 ATGAAACAAACTCCCTCCCTT 57.096 42.857 0.00 0.00 0.00 3.95
509 1118 5.970640 TCTATATGAAACAAACTCCCTCCCT 59.029 40.000 0.00 0.00 0.00 4.20
510 1119 6.248569 TCTATATGAAACAAACTCCCTCCC 57.751 41.667 0.00 0.00 0.00 4.30
511 1120 8.753497 ATTTCTATATGAAACAAACTCCCTCC 57.247 34.615 3.46 0.00 46.08 4.30
531 1140 9.183368 CCCTATTTTGCTCTCTTCTAAATTTCT 57.817 33.333 0.00 0.00 0.00 2.52
532 1141 8.961634 ACCCTATTTTGCTCTCTTCTAAATTTC 58.038 33.333 0.00 0.00 0.00 2.17
533 1142 8.885693 ACCCTATTTTGCTCTCTTCTAAATTT 57.114 30.769 0.00 0.00 0.00 1.82
534 1143 9.620259 CTACCCTATTTTGCTCTCTTCTAAATT 57.380 33.333 0.00 0.00 0.00 1.82
535 1144 7.717436 GCTACCCTATTTTGCTCTCTTCTAAAT 59.283 37.037 0.00 0.00 0.00 1.40
536 1145 7.048512 GCTACCCTATTTTGCTCTCTTCTAAA 58.951 38.462 0.00 0.00 0.00 1.85
537 1146 6.156256 TGCTACCCTATTTTGCTCTCTTCTAA 59.844 38.462 0.00 0.00 0.00 2.10
538 1147 5.661312 TGCTACCCTATTTTGCTCTCTTCTA 59.339 40.000 0.00 0.00 0.00 2.10
539 1148 4.471386 TGCTACCCTATTTTGCTCTCTTCT 59.529 41.667 0.00 0.00 0.00 2.85
540 1149 4.770795 TGCTACCCTATTTTGCTCTCTTC 58.229 43.478 0.00 0.00 0.00 2.87
541 1150 4.844349 TGCTACCCTATTTTGCTCTCTT 57.156 40.909 0.00 0.00 0.00 2.85
542 1151 4.844349 TTGCTACCCTATTTTGCTCTCT 57.156 40.909 0.00 0.00 0.00 3.10
543 1152 6.095440 TCAATTTGCTACCCTATTTTGCTCTC 59.905 38.462 0.00 0.00 0.00 3.20
544 1153 5.951747 TCAATTTGCTACCCTATTTTGCTCT 59.048 36.000 0.00 0.00 0.00 4.09
545 1154 6.207691 TCAATTTGCTACCCTATTTTGCTC 57.792 37.500 0.00 0.00 0.00 4.26
546 1155 6.796785 ATCAATTTGCTACCCTATTTTGCT 57.203 33.333 0.00 0.00 0.00 3.91
547 1156 6.258507 CCAATCAATTTGCTACCCTATTTTGC 59.741 38.462 0.00 0.00 33.73 3.68
548 1157 6.258507 GCCAATCAATTTGCTACCCTATTTTG 59.741 38.462 0.00 0.00 33.73 2.44
549 1158 6.156775 AGCCAATCAATTTGCTACCCTATTTT 59.843 34.615 0.00 0.00 33.73 1.82
550 1159 5.662657 AGCCAATCAATTTGCTACCCTATTT 59.337 36.000 0.00 0.00 33.73 1.40
551 1160 5.069516 CAGCCAATCAATTTGCTACCCTATT 59.930 40.000 1.44 0.00 33.73 1.73
552 1161 4.586001 CAGCCAATCAATTTGCTACCCTAT 59.414 41.667 1.44 0.00 33.73 2.57
553 1162 3.953612 CAGCCAATCAATTTGCTACCCTA 59.046 43.478 1.44 0.00 33.73 3.53
554 1163 2.762327 CAGCCAATCAATTTGCTACCCT 59.238 45.455 1.44 0.00 33.73 4.34
555 1164 2.497273 ACAGCCAATCAATTTGCTACCC 59.503 45.455 1.44 0.00 33.73 3.69
556 1165 3.874392 ACAGCCAATCAATTTGCTACC 57.126 42.857 1.44 0.00 33.73 3.18
557 1166 6.155827 TGTAAACAGCCAATCAATTTGCTAC 58.844 36.000 1.44 0.00 33.73 3.58
558 1167 6.338214 TGTAAACAGCCAATCAATTTGCTA 57.662 33.333 1.44 0.00 33.73 3.49
559 1168 5.212532 TGTAAACAGCCAATCAATTTGCT 57.787 34.783 0.00 0.00 33.73 3.91
560 1169 5.520022 CTGTAAACAGCCAATCAATTTGC 57.480 39.130 0.00 0.00 37.15 3.68
573 1182 5.359716 AGACTCAGTACGACTGTAAACAG 57.640 43.478 8.56 8.56 46.03 3.16
574 1183 5.516996 CAAGACTCAGTACGACTGTAAACA 58.483 41.667 12.62 0.00 46.03 2.83
575 1184 4.382160 GCAAGACTCAGTACGACTGTAAAC 59.618 45.833 12.62 5.92 46.03 2.01
576 1185 4.037089 TGCAAGACTCAGTACGACTGTAAA 59.963 41.667 12.62 0.00 46.03 2.01
577 1186 3.566742 TGCAAGACTCAGTACGACTGTAA 59.433 43.478 12.62 0.00 46.03 2.41
578 1187 3.058432 GTGCAAGACTCAGTACGACTGTA 60.058 47.826 12.62 2.71 46.03 2.74
579 1188 1.954382 TGCAAGACTCAGTACGACTGT 59.046 47.619 12.62 0.00 46.03 3.55
581 1190 1.069159 CGTGCAAGACTCAGTACGACT 60.069 52.381 11.30 0.00 44.74 4.18
582 1191 1.328439 CGTGCAAGACTCAGTACGAC 58.672 55.000 11.30 0.00 44.74 4.34
583 1192 0.240145 CCGTGCAAGACTCAGTACGA 59.760 55.000 16.27 0.00 44.74 3.43
584 1193 1.344942 GCCGTGCAAGACTCAGTACG 61.345 60.000 0.00 10.22 42.25 3.67
585 1194 0.038159 AGCCGTGCAAGACTCAGTAC 60.038 55.000 0.00 0.00 0.00 2.73
586 1195 0.038251 CAGCCGTGCAAGACTCAGTA 60.038 55.000 0.00 0.00 0.00 2.74
587 1196 1.301244 CAGCCGTGCAAGACTCAGT 60.301 57.895 0.00 0.00 0.00 3.41
588 1197 0.882042 AACAGCCGTGCAAGACTCAG 60.882 55.000 0.00 0.00 0.00 3.35
589 1198 0.463654 AAACAGCCGTGCAAGACTCA 60.464 50.000 0.00 0.00 0.00 3.41
590 1199 0.040958 CAAACAGCCGTGCAAGACTC 60.041 55.000 0.00 0.00 0.00 3.36
591 1200 1.447317 CCAAACAGCCGTGCAAGACT 61.447 55.000 0.00 0.00 0.00 3.24
592 1201 1.008538 CCAAACAGCCGTGCAAGAC 60.009 57.895 0.00 0.00 0.00 3.01
593 1202 0.537143 ATCCAAACAGCCGTGCAAGA 60.537 50.000 0.00 0.00 0.00 3.02
594 1203 0.387622 CATCCAAACAGCCGTGCAAG 60.388 55.000 0.00 0.00 0.00 4.01
595 1204 0.821301 TCATCCAAACAGCCGTGCAA 60.821 50.000 0.00 0.00 0.00 4.08
596 1205 0.821301 TTCATCCAAACAGCCGTGCA 60.821 50.000 0.00 0.00 0.00 4.57
597 1206 0.387239 GTTCATCCAAACAGCCGTGC 60.387 55.000 0.00 0.00 0.00 5.34
598 1207 0.950836 TGTTCATCCAAACAGCCGTG 59.049 50.000 0.00 0.00 34.31 4.94
599 1208 1.238439 CTGTTCATCCAAACAGCCGT 58.762 50.000 4.05 0.00 46.81 5.68
604 1213 2.711009 AGGACCTCTGTTCATCCAAACA 59.289 45.455 0.00 0.00 37.56 2.83
605 1214 3.425162 AGGACCTCTGTTCATCCAAAC 57.575 47.619 0.00 0.00 33.33 2.93
606 1215 3.394274 TGAAGGACCTCTGTTCATCCAAA 59.606 43.478 0.00 0.00 33.33 3.28
607 1216 2.978978 TGAAGGACCTCTGTTCATCCAA 59.021 45.455 0.00 0.00 33.33 3.53
608 1217 2.619931 TGAAGGACCTCTGTTCATCCA 58.380 47.619 0.00 0.00 33.33 3.41
609 1218 3.054802 ACATGAAGGACCTCTGTTCATCC 60.055 47.826 0.00 0.00 38.56 3.51
610 1219 4.213564 ACATGAAGGACCTCTGTTCATC 57.786 45.455 0.00 0.00 38.56 2.92
611 1220 5.965033 ATACATGAAGGACCTCTGTTCAT 57.035 39.130 0.00 5.35 40.73 2.57
612 1221 5.248248 TCAATACATGAAGGACCTCTGTTCA 59.752 40.000 0.00 3.29 34.30 3.18
613 1222 5.734720 TCAATACATGAAGGACCTCTGTTC 58.265 41.667 0.00 0.00 34.30 3.18
614 1223 5.338708 CCTCAATACATGAAGGACCTCTGTT 60.339 44.000 0.00 0.00 37.67 3.16
615 1224 4.163078 CCTCAATACATGAAGGACCTCTGT 59.837 45.833 0.00 1.96 37.67 3.41
616 1225 4.406972 TCCTCAATACATGAAGGACCTCTG 59.593 45.833 0.00 0.00 37.67 3.35
617 1226 4.624913 TCCTCAATACATGAAGGACCTCT 58.375 43.478 0.00 0.00 37.67 3.69
618 1227 5.359194 TTCCTCAATACATGAAGGACCTC 57.641 43.478 0.00 0.00 37.67 3.85
619 1228 5.983333 ATTCCTCAATACATGAAGGACCT 57.017 39.130 0.00 0.00 37.67 3.85
620 1229 5.888161 ACAATTCCTCAATACATGAAGGACC 59.112 40.000 0.00 0.00 37.67 4.46
621 1230 7.396540 AACAATTCCTCAATACATGAAGGAC 57.603 36.000 0.00 0.00 37.67 3.85
622 1231 7.556275 GGTAACAATTCCTCAATACATGAAGGA 59.444 37.037 0.00 0.61 37.67 3.36
623 1232 7.557719 AGGTAACAATTCCTCAATACATGAAGG 59.442 37.037 0.00 0.00 36.82 3.46
624 1233 8.511604 AGGTAACAATTCCTCAATACATGAAG 57.488 34.615 0.00 0.00 36.82 3.02
625 1234 8.506168 GAGGTAACAATTCCTCAATACATGAA 57.494 34.615 0.00 0.00 46.59 2.57
636 1245 8.265764 GGTTACAATCTAGAGGTAACAATTCCT 58.734 37.037 31.01 1.44 45.31 3.36
637 1246 7.498239 GGGTTACAATCTAGAGGTAACAATTCC 59.502 40.741 31.01 24.19 45.31 3.01
638 1247 8.265764 AGGGTTACAATCTAGAGGTAACAATTC 58.734 37.037 31.01 22.55 45.31 2.17
639 1248 8.159229 AGGGTTACAATCTAGAGGTAACAATT 57.841 34.615 31.01 20.96 45.31 2.32
640 1249 7.750947 AGGGTTACAATCTAGAGGTAACAAT 57.249 36.000 31.01 22.76 45.31 2.71
641 1250 8.849543 ATAGGGTTACAATCTAGAGGTAACAA 57.150 34.615 31.01 22.67 45.31 2.83
642 1251 8.849543 AATAGGGTTACAATCTAGAGGTAACA 57.150 34.615 31.01 20.76 45.31 2.41
669 1278 9.699703 CGAGGTAAAGGGAAATTTTATTCAAAA 57.300 29.630 0.00 0.00 38.00 2.44
670 1279 7.815549 GCGAGGTAAAGGGAAATTTTATTCAAA 59.184 33.333 0.00 0.00 0.00 2.69
671 1280 7.039644 TGCGAGGTAAAGGGAAATTTTATTCAA 60.040 33.333 0.00 0.00 0.00 2.69
672 1281 6.434652 TGCGAGGTAAAGGGAAATTTTATTCA 59.565 34.615 0.00 0.00 0.00 2.57
673 1282 6.859017 TGCGAGGTAAAGGGAAATTTTATTC 58.141 36.000 0.00 0.00 0.00 1.75
674 1283 6.844097 TGCGAGGTAAAGGGAAATTTTATT 57.156 33.333 0.00 0.00 0.00 1.40
675 1284 6.844097 TTGCGAGGTAAAGGGAAATTTTAT 57.156 33.333 0.00 0.00 0.00 1.40
676 1285 6.651975 TTTGCGAGGTAAAGGGAAATTTTA 57.348 33.333 0.00 0.00 0.00 1.52
677 1286 5.538849 TTTGCGAGGTAAAGGGAAATTTT 57.461 34.783 0.00 0.00 0.00 1.82
678 1287 5.538849 TTTTGCGAGGTAAAGGGAAATTT 57.461 34.783 0.00 0.00 0.00 1.82
679 1288 5.538849 TTTTTGCGAGGTAAAGGGAAATT 57.461 34.783 0.00 0.00 0.00 1.82
702 1311 5.590259 ACAGACAGACAGCAGTATTGTTTTT 59.410 36.000 1.32 0.00 0.00 1.94
779 1393 1.104577 TCCACCTGTTTCGTTTGGGC 61.105 55.000 0.00 0.00 0.00 5.36
813 1432 2.093921 CGTTTTTGTTGGGTTGGAAGGT 60.094 45.455 0.00 0.00 0.00 3.50
823 1442 2.017138 ACCAAAGGCGTTTTTGTTGG 57.983 45.000 0.70 3.50 43.60 3.77
824 1443 3.258228 AGAACCAAAGGCGTTTTTGTTG 58.742 40.909 16.79 2.00 35.47 3.33
828 1447 4.430007 GAGAAAGAACCAAAGGCGTTTTT 58.570 39.130 0.70 0.00 0.00 1.94
829 1448 3.181479 GGAGAAAGAACCAAAGGCGTTTT 60.181 43.478 0.70 0.00 0.00 2.43
830 1449 2.361119 GGAGAAAGAACCAAAGGCGTTT 59.639 45.455 0.00 0.00 0.00 3.60
831 1450 1.954382 GGAGAAAGAACCAAAGGCGTT 59.046 47.619 0.00 0.00 0.00 4.84
832 1451 1.143073 AGGAGAAAGAACCAAAGGCGT 59.857 47.619 0.00 0.00 0.00 5.68
833 1452 1.897560 AGGAGAAAGAACCAAAGGCG 58.102 50.000 0.00 0.00 0.00 5.52
834 1453 4.501571 GGAAAAGGAGAAAGAACCAAAGGC 60.502 45.833 0.00 0.00 0.00 4.35
835 1454 4.261614 CGGAAAAGGAGAAAGAACCAAAGG 60.262 45.833 0.00 0.00 0.00 3.11
836 1455 4.338400 ACGGAAAAGGAGAAAGAACCAAAG 59.662 41.667 0.00 0.00 0.00 2.77
837 1456 4.097286 CACGGAAAAGGAGAAAGAACCAAA 59.903 41.667 0.00 0.00 0.00 3.28
838 1457 3.630312 CACGGAAAAGGAGAAAGAACCAA 59.370 43.478 0.00 0.00 0.00 3.67
839 1458 3.118186 TCACGGAAAAGGAGAAAGAACCA 60.118 43.478 0.00 0.00 0.00 3.67
840 1459 3.250280 GTCACGGAAAAGGAGAAAGAACC 59.750 47.826 0.00 0.00 0.00 3.62
842 1461 4.145365 TGTCACGGAAAAGGAGAAAGAA 57.855 40.909 0.00 0.00 0.00 2.52
889 1508 2.146073 CTGGTTCGGCCTTGCTTTGG 62.146 60.000 0.00 0.00 38.35 3.28
902 1522 0.663153 GCTGTGTGTTGGTCTGGTTC 59.337 55.000 0.00 0.00 0.00 3.62
935 1555 0.831711 GAGAGGGGGCTGAGGAGATC 60.832 65.000 0.00 0.00 0.00 2.75
986 1627 4.240103 CCATGGCCGCGGATCTGA 62.240 66.667 33.48 6.92 0.00 3.27
1061 1706 1.594331 GGAAAAGGCGTGACTGAGTT 58.406 50.000 0.00 0.00 0.00 3.01
1063 1708 0.955919 GGGGAAAAGGCGTGACTGAG 60.956 60.000 0.00 0.00 0.00 3.35
1067 1712 0.822121 AACTGGGGAAAAGGCGTGAC 60.822 55.000 0.00 0.00 0.00 3.67
1114 1768 2.301296 CACAGGTTGATCAGAGGACAGT 59.699 50.000 0.00 0.00 0.00 3.55
1141 1798 0.103026 TGATGGCGATCCGAGAACAG 59.897 55.000 6.23 0.00 34.14 3.16
1208 1869 2.125512 ACGAATCAGACAGGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
1233 1894 0.322997 CCCCCGCACAGAAATAACCA 60.323 55.000 0.00 0.00 0.00 3.67
1409 2075 2.158534 TGGCAGTTGAGCTAGGGAAAAA 60.159 45.455 0.00 0.00 34.17 1.94
1410 2076 1.423541 TGGCAGTTGAGCTAGGGAAAA 59.576 47.619 0.00 0.00 34.17 2.29
1411 2077 1.064003 TGGCAGTTGAGCTAGGGAAA 58.936 50.000 0.00 0.00 34.17 3.13
1412 2078 1.289160 ATGGCAGTTGAGCTAGGGAA 58.711 50.000 0.00 0.00 34.17 3.97
1413 2079 1.065199 CAATGGCAGTTGAGCTAGGGA 60.065 52.381 0.00 0.00 34.17 4.20
1414 2080 1.386533 CAATGGCAGTTGAGCTAGGG 58.613 55.000 0.00 0.00 34.17 3.53
1415 2081 1.065199 TCCAATGGCAGTTGAGCTAGG 60.065 52.381 0.00 0.00 34.17 3.02
1416 2082 2.408271 TCCAATGGCAGTTGAGCTAG 57.592 50.000 0.00 0.00 34.17 3.42
1417 2083 3.018856 CAATCCAATGGCAGTTGAGCTA 58.981 45.455 0.00 0.00 34.17 3.32
1418 2084 1.822990 CAATCCAATGGCAGTTGAGCT 59.177 47.619 0.00 0.00 34.17 4.09
1419 2085 1.820519 TCAATCCAATGGCAGTTGAGC 59.179 47.619 9.42 0.00 0.00 4.26
1420 2086 2.821378 TGTCAATCCAATGGCAGTTGAG 59.179 45.455 12.49 3.09 30.05 3.02
1421 2087 2.874014 TGTCAATCCAATGGCAGTTGA 58.126 42.857 9.42 9.42 30.05 3.18
1422 2088 3.517602 CATGTCAATCCAATGGCAGTTG 58.482 45.455 0.00 0.00 38.50 3.16
1423 2089 2.093869 GCATGTCAATCCAATGGCAGTT 60.094 45.455 0.00 0.00 38.50 3.16
1424 2090 1.479323 GCATGTCAATCCAATGGCAGT 59.521 47.619 0.00 0.00 38.50 4.40
1425 2091 1.754803 AGCATGTCAATCCAATGGCAG 59.245 47.619 0.00 0.00 38.50 4.85
1426 2092 1.855295 AGCATGTCAATCCAATGGCA 58.145 45.000 0.00 0.00 39.61 4.92
1427 2093 2.546778 CAAGCATGTCAATCCAATGGC 58.453 47.619 0.00 0.00 0.00 4.40
1428 2094 2.498481 ACCAAGCATGTCAATCCAATGG 59.502 45.455 0.00 0.00 0.00 3.16
1429 2095 3.517602 CACCAAGCATGTCAATCCAATG 58.482 45.455 0.00 0.00 0.00 2.82
1430 2096 2.093869 GCACCAAGCATGTCAATCCAAT 60.094 45.455 0.00 0.00 44.79 3.16
1431 2097 1.273048 GCACCAAGCATGTCAATCCAA 59.727 47.619 0.00 0.00 44.79 3.53
1432 2098 0.889994 GCACCAAGCATGTCAATCCA 59.110 50.000 0.00 0.00 44.79 3.41
1433 2099 3.727419 GCACCAAGCATGTCAATCC 57.273 52.632 0.00 0.00 44.79 3.01
1458 2124 9.715121 CAGAACTAACTACCCAACAGTAAATAA 57.285 33.333 0.00 0.00 0.00 1.40
1459 2125 8.316214 CCAGAACTAACTACCCAACAGTAAATA 58.684 37.037 0.00 0.00 0.00 1.40
1460 2126 7.166167 CCAGAACTAACTACCCAACAGTAAAT 58.834 38.462 0.00 0.00 0.00 1.40
1465 2131 3.326880 ACCCAGAACTAACTACCCAACAG 59.673 47.826 0.00 0.00 0.00 3.16
1475 2141 6.532988 AGATCTAAGACACCCAGAACTAAC 57.467 41.667 0.00 0.00 0.00 2.34
1480 2146 5.483937 TGCTAAAGATCTAAGACACCCAGAA 59.516 40.000 8.78 0.00 0.00 3.02
1490 2156 8.649973 AAATCCGTTAGTGCTAAAGATCTAAG 57.350 34.615 0.00 0.00 0.00 2.18
1496 2168 6.821665 AGCATAAAATCCGTTAGTGCTAAAGA 59.178 34.615 6.49 2.11 39.43 2.52
1497 2169 6.907212 CAGCATAAAATCCGTTAGTGCTAAAG 59.093 38.462 0.00 0.00 39.22 1.85
1498 2170 6.373216 ACAGCATAAAATCCGTTAGTGCTAAA 59.627 34.615 0.00 0.00 39.22 1.85
1499 2171 5.878116 ACAGCATAAAATCCGTTAGTGCTAA 59.122 36.000 0.00 0.00 39.22 3.09
1500 2172 5.424757 ACAGCATAAAATCCGTTAGTGCTA 58.575 37.500 0.00 0.00 39.22 3.49
1501 2173 4.261801 ACAGCATAAAATCCGTTAGTGCT 58.738 39.130 0.00 0.00 41.66 4.40
1502 2174 4.616181 ACAGCATAAAATCCGTTAGTGC 57.384 40.909 0.00 0.00 0.00 4.40
1515 2187 6.671190 CAAGTTCACATCTCAAACAGCATAA 58.329 36.000 0.00 0.00 0.00 1.90
1547 2228 7.077605 CAGACAATAAGAACTTCGCAAATTGA 58.922 34.615 0.00 0.00 0.00 2.57
1549 2230 6.016276 ACCAGACAATAAGAACTTCGCAAATT 60.016 34.615 0.00 0.00 0.00 1.82
1551 2232 4.819630 ACCAGACAATAAGAACTTCGCAAA 59.180 37.500 0.00 0.00 0.00 3.68
1552 2233 4.385825 ACCAGACAATAAGAACTTCGCAA 58.614 39.130 0.00 0.00 0.00 4.85
1553 2234 4.002906 ACCAGACAATAAGAACTTCGCA 57.997 40.909 0.00 0.00 0.00 5.10
1554 2235 5.638234 ACTAACCAGACAATAAGAACTTCGC 59.362 40.000 0.00 0.00 0.00 4.70
1555 2236 6.645415 ACACTAACCAGACAATAAGAACTTCG 59.355 38.462 0.00 0.00 0.00 3.79
1556 2237 7.964604 ACACTAACCAGACAATAAGAACTTC 57.035 36.000 0.00 0.00 0.00 3.01
1564 2245 8.375506 AGAATTCAGAACACTAACCAGACAATA 58.624 33.333 8.44 0.00 0.00 1.90
1568 2249 6.706270 TCAAGAATTCAGAACACTAACCAGAC 59.294 38.462 8.44 0.00 0.00 3.51
1595 2276 8.636213 TCTTATATTTTAGGAACGGAGGTAGTG 58.364 37.037 0.00 0.00 0.00 2.74
1596 2277 8.773033 TCTTATATTTTAGGAACGGAGGTAGT 57.227 34.615 0.00 0.00 0.00 2.73
1597 2278 9.640963 CATCTTATATTTTAGGAACGGAGGTAG 57.359 37.037 0.00 0.00 0.00 3.18
1598 2279 9.151177 ACATCTTATATTTTAGGAACGGAGGTA 57.849 33.333 0.00 0.00 0.00 3.08
1599 2280 8.030913 ACATCTTATATTTTAGGAACGGAGGT 57.969 34.615 0.00 0.00 0.00 3.85
1600 2281 8.904099 AACATCTTATATTTTAGGAACGGAGG 57.096 34.615 0.00 0.00 0.00 4.30
1632 2313 9.950496 TGTACCCATTTTAATGTGCATTAAATT 57.050 25.926 22.76 18.27 46.46 1.82
1634 2315 9.376075 CATGTACCCATTTTAATGTGCATTAAA 57.624 29.630 19.98 19.98 45.93 1.52
1635 2316 7.984050 CCATGTACCCATTTTAATGTGCATTAA 59.016 33.333 11.91 11.91 40.39 1.40
1636 2317 7.418368 CCCATGTACCCATTTTAATGTGCATTA 60.418 37.037 0.00 0.90 34.60 1.90
1637 2318 6.347696 CCATGTACCCATTTTAATGTGCATT 58.652 36.000 0.00 2.83 34.60 3.56
1638 2319 5.163322 CCCATGTACCCATTTTAATGTGCAT 60.163 40.000 0.00 0.00 34.60 3.96
1639 2320 4.161189 CCCATGTACCCATTTTAATGTGCA 59.839 41.667 2.13 0.00 34.60 4.57
1640 2321 4.404073 TCCCATGTACCCATTTTAATGTGC 59.596 41.667 2.13 0.00 34.60 4.57
1641 2322 6.537453 TTCCCATGTACCCATTTTAATGTG 57.463 37.500 2.13 0.00 34.60 3.21
1642 2323 8.846423 TTATTCCCATGTACCCATTTTAATGT 57.154 30.769 2.13 0.00 34.60 2.71
1674 2355 8.383318 TGTTCCTGAATATAAGATGCTTTAGC 57.617 34.615 0.00 0.00 42.50 3.09
1675 2356 9.770097 TCTGTTCCTGAATATAAGATGCTTTAG 57.230 33.333 0.00 0.00 0.00 1.85
1676 2357 9.770097 CTCTGTTCCTGAATATAAGATGCTTTA 57.230 33.333 0.00 0.00 0.00 1.85
1677 2358 7.718753 CCTCTGTTCCTGAATATAAGATGCTTT 59.281 37.037 0.00 0.00 0.00 3.51
1678 2359 7.222872 CCTCTGTTCCTGAATATAAGATGCTT 58.777 38.462 0.00 0.00 0.00 3.91
1679 2360 6.239829 CCCTCTGTTCCTGAATATAAGATGCT 60.240 42.308 0.00 0.00 0.00 3.79
1680 2361 5.936956 CCCTCTGTTCCTGAATATAAGATGC 59.063 44.000 0.00 0.00 0.00 3.91
1681 2362 7.016072 ACTCCCTCTGTTCCTGAATATAAGATG 59.984 40.741 0.00 0.00 0.00 2.90
1682 2363 7.079048 ACTCCCTCTGTTCCTGAATATAAGAT 58.921 38.462 0.00 0.00 0.00 2.40
1683 2364 6.444704 ACTCCCTCTGTTCCTGAATATAAGA 58.555 40.000 0.00 0.00 0.00 2.10
1684 2365 6.739331 ACTCCCTCTGTTCCTGAATATAAG 57.261 41.667 0.00 0.00 0.00 1.73
1685 2366 6.782988 CCTACTCCCTCTGTTCCTGAATATAA 59.217 42.308 0.00 0.00 0.00 0.98
1686 2367 6.125860 ACCTACTCCCTCTGTTCCTGAATATA 60.126 42.308 0.00 0.00 0.00 0.86
1687 2368 5.151454 CCTACTCCCTCTGTTCCTGAATAT 58.849 45.833 0.00 0.00 0.00 1.28
1688 2369 4.016479 ACCTACTCCCTCTGTTCCTGAATA 60.016 45.833 0.00 0.00 0.00 1.75
1689 2370 3.246167 ACCTACTCCCTCTGTTCCTGAAT 60.246 47.826 0.00 0.00 0.00 2.57
1690 2371 2.111972 ACCTACTCCCTCTGTTCCTGAA 59.888 50.000 0.00 0.00 0.00 3.02
1691 2372 1.717077 ACCTACTCCCTCTGTTCCTGA 59.283 52.381 0.00 0.00 0.00 3.86
1692 2373 2.239681 ACCTACTCCCTCTGTTCCTG 57.760 55.000 0.00 0.00 0.00 3.86
1693 2374 2.907042 CAAACCTACTCCCTCTGTTCCT 59.093 50.000 0.00 0.00 0.00 3.36
1694 2375 2.904434 TCAAACCTACTCCCTCTGTTCC 59.096 50.000 0.00 0.00 0.00 3.62
1695 2376 4.223032 TCATCAAACCTACTCCCTCTGTTC 59.777 45.833 0.00 0.00 0.00 3.18
1696 2377 4.168101 TCATCAAACCTACTCCCTCTGTT 58.832 43.478 0.00 0.00 0.00 3.16
1697 2378 3.791320 TCATCAAACCTACTCCCTCTGT 58.209 45.455 0.00 0.00 0.00 3.41
1698 2379 4.406972 TCATCATCAAACCTACTCCCTCTG 59.593 45.833 0.00 0.00 0.00 3.35
1699 2380 4.624913 TCATCATCAAACCTACTCCCTCT 58.375 43.478 0.00 0.00 0.00 3.69
1700 2381 5.070981 TGATCATCATCAAACCTACTCCCTC 59.929 44.000 0.00 0.00 35.99 4.30
1701 2382 4.971282 TGATCATCATCAAACCTACTCCCT 59.029 41.667 0.00 0.00 35.99 4.20
1702 2383 5.296151 TGATCATCATCAAACCTACTCCC 57.704 43.478 0.00 0.00 35.99 4.30
1703 2384 6.352516 ACTTGATCATCATCAAACCTACTCC 58.647 40.000 0.00 0.00 46.35 3.85
1704 2385 7.856145 AACTTGATCATCATCAAACCTACTC 57.144 36.000 0.00 0.00 46.35 2.59
1705 2386 9.388506 CTAAACTTGATCATCATCAAACCTACT 57.611 33.333 0.00 0.00 46.35 2.57
1706 2387 9.167311 ACTAAACTTGATCATCATCAAACCTAC 57.833 33.333 0.00 0.00 46.35 3.18
1712 2393 8.321353 AGTACCACTAAACTTGATCATCATCAA 58.679 33.333 0.00 0.00 45.20 2.57
1713 2394 7.851228 AGTACCACTAAACTTGATCATCATCA 58.149 34.615 0.00 0.00 37.24 3.07
1749 2436 6.989759 TCATAAACAAACTGCAGAGTACAAGA 59.010 34.615 23.35 9.48 0.00 3.02
1794 2494 6.808008 AAATGTCACTTATGTTGACCTGAG 57.192 37.500 0.25 0.00 0.00 3.35
1844 2544 3.055094 ACCTACCAGCAGGATGTTTACAG 60.055 47.826 0.35 0.00 39.18 2.74
1847 2656 2.910319 ACACCTACCAGCAGGATGTTTA 59.090 45.455 0.35 0.00 39.18 2.01
1868 2685 9.562408 TGTAATCGCATTAACCTATCCAATAAA 57.438 29.630 0.00 0.00 0.00 1.40
1907 2724 6.617784 TCTTATGACATATCTACCCCCAAACA 59.382 38.462 0.00 0.00 0.00 2.83
1908 2725 7.074653 TCTTATGACATATCTACCCCCAAAC 57.925 40.000 0.00 0.00 0.00 2.93
1912 2729 9.668497 GTAATTTCTTATGACATATCTACCCCC 57.332 37.037 0.00 0.00 0.00 5.40
1990 2834 7.065563 CAGTCCTCTAATCCTTGAGAAATTGTG 59.934 40.741 0.00 0.00 32.44 3.33
2041 3026 8.900781 CAATTCCCCTGCATCATATCTAATTAG 58.099 37.037 6.11 6.11 0.00 1.73
2050 3035 2.752075 TGCAATTCCCCTGCATCATA 57.248 45.000 0.00 0.00 44.67 2.15
2093 3078 5.069781 AGTGTTAAGACAGCTTTCTCTCTGT 59.930 40.000 2.15 0.00 45.32 3.41
2162 3148 2.711009 TGTTTCCTCTGGACTTGGACAT 59.289 45.455 0.00 0.00 0.00 3.06
2184 3170 4.946784 AGCCATAACTTAGCAAAAGTCG 57.053 40.909 5.09 0.00 0.00 4.18
2287 3273 8.705594 CAGAAAGAGACCCCATAGTAAGATAAA 58.294 37.037 0.00 0.00 0.00 1.40
2288 3274 7.844779 ACAGAAAGAGACCCCATAGTAAGATAA 59.155 37.037 0.00 0.00 0.00 1.75
2289 3275 7.363031 ACAGAAAGAGACCCCATAGTAAGATA 58.637 38.462 0.00 0.00 0.00 1.98
2298 3284 4.223923 CAGAGTAACAGAAAGAGACCCCAT 59.776 45.833 0.00 0.00 0.00 4.00
2344 3330 0.419459 AGAGACTGGAGGATTGGGGT 59.581 55.000 0.00 0.00 0.00 4.95
2394 3382 8.732746 ACATGGTCCATAAGTTTGAGTAATAC 57.267 34.615 3.38 0.00 0.00 1.89
2403 3391 3.264964 ACCGGTACATGGTCCATAAGTTT 59.735 43.478 4.49 0.00 33.35 2.66
2424 3413 5.629079 AGTCTTAACCAAAGCAAGCATAC 57.371 39.130 0.00 0.00 34.97 2.39
2425 3414 7.165485 TCTTAGTCTTAACCAAAGCAAGCATA 58.835 34.615 0.00 0.00 34.97 3.14
2426 3415 6.003950 TCTTAGTCTTAACCAAAGCAAGCAT 58.996 36.000 0.00 0.00 34.97 3.79
2517 3507 9.535878 GTTCAATACTCTAGTCCAGATTTAAGG 57.464 37.037 0.00 0.00 31.13 2.69
2545 3535 0.690411 AGGATGGCAGGGTCTCTGAG 60.690 60.000 3.10 0.00 46.18 3.35
2563 3553 8.044060 TCATTGCTGTCCTGTTAAATAGAAAG 57.956 34.615 0.00 0.00 0.00 2.62
2594 3584 1.221414 AGAGAACGCAACTGAACAGC 58.779 50.000 1.46 0.00 0.00 4.40
2603 3593 2.965831 AGATAGGCCATAGAGAACGCAA 59.034 45.455 5.01 0.00 0.00 4.85
2759 3750 5.396750 GACAGCAGTCTCCGAAAAATATC 57.603 43.478 1.35 0.00 41.64 1.63
2889 3969 9.192642 TGTTATTAACTAGTACTCACAGCCATA 57.807 33.333 0.00 0.00 0.00 2.74
3035 4125 6.780706 ATCATTGGACGGATATTAACGAAC 57.219 37.500 0.00 0.00 0.00 3.95
3113 4204 2.367567 ACCATATTAAGCGTCCGGTGAT 59.632 45.455 0.00 0.00 0.00 3.06
3185 4276 9.013490 CAATATACATGCAAAAGCAGAACTAAC 57.987 33.333 0.00 0.00 0.00 2.34
3202 4293 7.665690 TCACAGCAACCAAAAACAATATACAT 58.334 30.769 0.00 0.00 0.00 2.29
3333 4484 9.803315 GACAGATGTACATTCAGTGTTCTTATA 57.197 33.333 10.30 0.00 42.29 0.98
3393 4545 8.460831 AACGAAAATGTGGTAAGATTAAATGC 57.539 30.769 0.00 0.00 0.00 3.56
3481 4633 2.505819 ACAGTCAGCTCCCCGATAAAAT 59.494 45.455 0.00 0.00 0.00 1.82
3527 4679 9.313118 GTTGAGTTTTTCAAATGACTTGGTAAT 57.687 29.630 0.00 0.00 46.85 1.89
3651 4803 0.111061 AGCCTGCAACCAGAATGACA 59.889 50.000 0.00 0.00 41.77 3.58
3659 4811 2.556840 GATGGGCTAGCCTGCAACCA 62.557 60.000 32.18 20.70 36.10 3.67
3660 4812 1.825622 GATGGGCTAGCCTGCAACC 60.826 63.158 32.18 15.57 36.10 3.77
3823 4981 5.662211 TTTTCTCGGAAACCTAAAAGACG 57.338 39.130 0.00 0.00 0.00 4.18
3830 4988 3.782656 AGCCTTTTTCTCGGAAACCTA 57.217 42.857 0.00 0.00 0.00 3.08
3838 4996 3.253432 ACCAAGCTTTAGCCTTTTTCTCG 59.747 43.478 0.00 0.00 43.38 4.04
4030 5188 4.838986 TCCCCTCCGAGGAAAATAATAGAG 59.161 45.833 16.69 0.00 37.67 2.43
4031 5189 4.823107 TCCCCTCCGAGGAAAATAATAGA 58.177 43.478 16.69 0.00 37.67 1.98
4050 5210 1.609072 GCTATTTCGAAATGCCCTCCC 59.391 52.381 29.20 8.86 0.00 4.30
4097 5259 8.614994 ATTTAGCAAAACGTCAATATAACTGC 57.385 30.769 0.00 0.00 0.00 4.40
4127 5289 7.888546 TGTCGATTGTATCAGGGAGATATCTAA 59.111 37.037 4.89 0.00 41.10 2.10
4188 5350 5.188327 TCCGTATCTTCTAGCATTCACAG 57.812 43.478 0.00 0.00 0.00 3.66
4224 5386 0.379669 GAGCATCACCAAGCCAATCG 59.620 55.000 0.00 0.00 33.17 3.34
4238 5400 2.811101 CTCGGGAAGAGCGAGCAT 59.189 61.111 0.00 0.00 40.54 3.79
4297 5459 6.546428 ACTAGACAACCATATGTAGCAACT 57.454 37.500 0.00 0.00 32.57 3.16
4383 5545 5.546621 TGCCAACTCTATACCATCTAACC 57.453 43.478 0.00 0.00 0.00 2.85
4483 5647 4.612939 GCCGTTCTTCTGTCCATTTACAAC 60.613 45.833 0.00 0.00 0.00 3.32
4588 5754 3.761752 GGAAGACGGGAATGGAATGAAAA 59.238 43.478 0.00 0.00 0.00 2.29
4592 5758 2.418368 TGGAAGACGGGAATGGAATG 57.582 50.000 0.00 0.00 0.00 2.67
4593 5759 2.423373 CCATGGAAGACGGGAATGGAAT 60.423 50.000 5.56 0.00 40.23 3.01
4604 5772 6.989169 GGCTGATCATATATACCATGGAAGAC 59.011 42.308 21.47 0.00 0.00 3.01
4636 5812 8.400947 ACAGCATGAATACACAGATATGAAAAC 58.599 33.333 0.00 0.00 39.69 2.43
4644 5820 6.384224 CAAACAACAGCATGAATACACAGAT 58.616 36.000 0.00 0.00 39.69 2.90
4675 5851 4.882671 ATCTTGGAAACCATCGAAATCG 57.117 40.909 0.00 0.00 41.45 3.34
4720 5896 0.320771 CAGGGACCTACACAGCACAC 60.321 60.000 0.00 0.00 0.00 3.82
4742 5918 9.642327 CATCCAGAAATTTGATAAATGAACACA 57.358 29.630 0.00 0.00 0.00 3.72
4787 5963 3.381045 TCAAGACAAACTGTAGCACTCG 58.619 45.455 0.00 0.00 0.00 4.18
4834 6010 3.242123 CCGCGAAAAGAAAGAGTATGCTC 60.242 47.826 8.23 2.03 41.94 4.26
4835 6011 2.673368 CCGCGAAAAGAAAGAGTATGCT 59.327 45.455 8.23 0.00 0.00 3.79
4836 6012 2.671396 TCCGCGAAAAGAAAGAGTATGC 59.329 45.455 8.23 0.00 0.00 3.14
4837 6013 4.025647 GGATCCGCGAAAAGAAAGAGTATG 60.026 45.833 8.23 0.00 0.00 2.39
4838 6014 4.120589 GGATCCGCGAAAAGAAAGAGTAT 58.879 43.478 8.23 0.00 0.00 2.12
4839 6015 3.056393 TGGATCCGCGAAAAGAAAGAGTA 60.056 43.478 8.23 0.00 0.00 2.59
4840 6016 2.289444 TGGATCCGCGAAAAGAAAGAGT 60.289 45.455 8.23 0.00 0.00 3.24
4841 6017 2.346803 TGGATCCGCGAAAAGAAAGAG 58.653 47.619 8.23 0.00 0.00 2.85
4842 6018 2.346803 CTGGATCCGCGAAAAGAAAGA 58.653 47.619 8.23 0.00 0.00 2.52
4843 6019 1.202076 GCTGGATCCGCGAAAAGAAAG 60.202 52.381 8.23 0.00 0.00 2.62
4844 6020 0.802494 GCTGGATCCGCGAAAAGAAA 59.198 50.000 8.23 0.00 0.00 2.52
4845 6021 2.466867 GCTGGATCCGCGAAAAGAA 58.533 52.632 8.23 0.00 0.00 2.52
4846 6022 4.201951 GCTGGATCCGCGAAAAGA 57.798 55.556 8.23 0.00 0.00 2.52
4853 6029 0.032130 TATGTTCTCGCTGGATCCGC 59.968 55.000 15.81 15.81 0.00 5.54
4854 6030 1.338337 AGTATGTTCTCGCTGGATCCG 59.662 52.381 7.39 3.14 0.00 4.18
4855 6031 3.019933 GAGTATGTTCTCGCTGGATCC 57.980 52.381 4.20 4.20 0.00 3.36
4898 6078 0.727398 GACGGGAAAGGCGAATTGAG 59.273 55.000 0.00 0.00 0.00 3.02
4900 6080 0.447801 CTGACGGGAAAGGCGAATTG 59.552 55.000 0.00 0.00 0.00 2.32
4901 6081 1.305930 GCTGACGGGAAAGGCGAATT 61.306 55.000 0.00 0.00 0.00 2.17
4922 6102 2.536761 GCATTTGGGCACATGCATAT 57.463 45.000 9.67 0.00 44.49 1.78
4944 6124 6.884832 AGGAAATGAATATGAGTTGGTCGTA 58.115 36.000 0.00 0.00 0.00 3.43
4957 6137 6.098266 TGCTGCTCTGTAGTAGGAAATGAATA 59.902 38.462 0.00 0.00 32.99 1.75
4958 6138 5.104776 TGCTGCTCTGTAGTAGGAAATGAAT 60.105 40.000 0.00 0.00 32.99 2.57
5107 6289 0.313987 AAGCTACCGCAACTTTTGGC 59.686 50.000 0.00 0.00 39.10 4.52
5131 6313 0.796312 ATTTCAACGGTGTAGCGCAG 59.204 50.000 11.47 0.00 0.00 5.18
5133 6315 0.793104 GCATTTCAACGGTGTAGCGC 60.793 55.000 0.00 0.00 0.00 5.92
5166 6348 5.886992 ACTTCTGAAACTAAACAAAACCGG 58.113 37.500 0.00 0.00 0.00 5.28
5173 6355 6.465321 CCCCTCCTAACTTCTGAAACTAAACA 60.465 42.308 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.