Multiple sequence alignment - TraesCS3D01G160000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G160000 chr3D 100.000 6382 0 0 1 6382 130926305 130932686 0.000000e+00 11786.0
1 TraesCS3D01G160000 chr3A 89.599 3663 238 56 215 3806 142889768 142893358 0.000000e+00 4521.0
2 TraesCS3D01G160000 chr3A 89.080 989 42 24 4739 5684 142894194 142895159 0.000000e+00 1168.0
3 TraesCS3D01G160000 chr3A 93.090 521 24 11 3818 4331 142893344 142893859 0.000000e+00 752.0
4 TraesCS3D01G160000 chr3A 85.312 320 18 14 5987 6277 142896055 142896374 2.890000e-78 303.0
5 TraesCS3D01G160000 chr3A 88.710 248 14 3 5674 5907 142895181 142895428 2.250000e-74 291.0
6 TraesCS3D01G160000 chr3A 97.059 34 1 0 5931 5964 142895431 142895464 2.490000e-04 58.4
7 TraesCS3D01G160000 chr3B 93.854 2701 127 19 1809 4497 187347298 187349971 0.000000e+00 4032.0
8 TraesCS3D01G160000 chr3B 90.246 1179 51 31 608 1783 187345736 187346853 0.000000e+00 1482.0
9 TraesCS3D01G160000 chr3B 91.501 1059 59 15 4494 5527 187350018 187351070 0.000000e+00 1428.0
10 TraesCS3D01G160000 chr3B 81.030 427 50 18 218 615 187342730 187343154 1.730000e-80 311.0
11 TraesCS3D01G160000 chr3B 81.235 405 35 16 5599 5964 187351106 187351508 8.100000e-74 289.0
12 TraesCS3D01G160000 chr3B 87.000 200 7 8 6097 6277 187351668 187351867 2.330000e-49 207.0
13 TraesCS3D01G160000 chr3B 82.439 205 22 8 1788 1984 187346974 187347172 3.960000e-37 167.0
14 TraesCS3D01G160000 chr6A 87.778 180 16 4 16 192 431069371 431069195 8.390000e-49 206.0
15 TraesCS3D01G160000 chr2A 86.486 185 15 7 16 192 13616100 13615918 1.820000e-45 195.0
16 TraesCS3D01G160000 chr2A 86.339 183 18 4 16 192 617757241 617757060 6.530000e-45 193.0
17 TraesCS3D01G160000 chr1A 87.975 158 19 0 4151 4308 155695569 155695726 3.040000e-43 187.0
18 TraesCS3D01G160000 chr1B 85.635 181 20 4 16 192 514247882 514247704 1.090000e-42 185.0
19 TraesCS3D01G160000 chr1B 86.076 158 22 0 4151 4308 209131386 209131229 3.060000e-38 171.0
20 TraesCS3D01G160000 chr1D 87.342 158 20 0 4151 4308 137438765 137438608 1.410000e-41 182.0
21 TraesCS3D01G160000 chr1D 95.918 49 2 0 6334 6382 310768838 310768790 5.300000e-11 80.5
22 TraesCS3D01G160000 chr7D 89.630 135 12 2 16 149 51954328 51954461 3.060000e-38 171.0
23 TraesCS3D01G160000 chr4A 83.908 174 21 5 14 182 62357414 62357585 6.620000e-35 159.0
24 TraesCS3D01G160000 chr4A 87.129 101 8 3 91 188 498990986 498991084 6.760000e-20 110.0
25 TraesCS3D01G160000 chr5A 88.976 127 13 1 15 141 624195658 624195783 8.570000e-34 156.0
26 TraesCS3D01G160000 chr5D 90.000 110 9 2 6273 6382 459318440 459318333 2.400000e-29 141.0
27 TraesCS3D01G160000 chr6D 88.000 75 5 2 124 194 18099553 18099479 1.140000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G160000 chr3D 130926305 130932686 6381 False 11786.000000 11786 100.000000 1 6382 1 chr3D.!!$F1 6381
1 TraesCS3D01G160000 chr3A 142889768 142896374 6606 False 1182.233333 4521 90.475000 215 6277 6 chr3A.!!$F1 6062
2 TraesCS3D01G160000 chr3B 187342730 187351867 9137 False 1130.857143 4032 86.757857 218 6277 7 chr3B.!!$F1 6059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.032217 GGGGCCCATCCTCATGAAAA 60.032 55.000 26.86 0.00 34.56 2.29 F
465 477 0.103026 TAGTAGCTGGCTGACATGCG 59.897 55.000 5.25 0.00 0.00 4.73 F
941 3584 0.243907 ACTGGTGCTGCAGTAGTACG 59.756 55.000 16.64 2.34 42.28 3.67 F
942 3585 0.243907 CTGGTGCTGCAGTAGTACGT 59.756 55.000 16.64 0.00 42.28 3.57 F
1497 4153 1.141657 CACCTGCACTACTATGGGCAT 59.858 52.381 0.00 0.00 35.45 4.40 F
2884 5977 1.621317 TGGAGTTGCCGTATGAGTTGA 59.379 47.619 0.00 0.00 40.66 3.18 F
3312 6406 1.551430 TGCATTCTCTTGGGCATTTGG 59.449 47.619 0.00 0.00 0.00 3.28 F
4141 7242 4.696479 ATTACTGCCCTGATAGTCTTGG 57.304 45.455 0.00 0.00 0.00 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1998 5091 0.994050 AAGGAGGGCATACTTCCCCC 60.994 60.000 0.00 0.0 45.03 5.40 R
2415 5508 1.401905 GAGAATTCATTGGTCGCCACC 59.598 52.381 8.44 0.0 44.10 4.61 R
2523 5616 0.622665 CCTGCCCACTTCCATCTCTT 59.377 55.000 0.00 0.0 0.00 2.85 R
2853 5946 0.727398 GCAACTCCAACTCATACGGC 59.273 55.000 0.00 0.0 0.00 5.68 R
3167 6261 0.945813 TTCGGGTGGTAGCAAAAACG 59.054 50.000 0.00 0.0 0.00 3.60 R
4457 7574 1.256812 GGGTGTTTGGAAGGATGGTG 58.743 55.000 0.00 0.0 0.00 4.17 R
4463 7580 1.272480 CCTTAGGGGGTGTTTGGAAGG 60.272 57.143 0.00 0.0 0.00 3.46 R
5965 9230 0.106619 ACACACCTACCCCGCAAAAA 60.107 50.000 0.00 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.354751 CTAGTAGGAGGAAAAGAGTAATGCT 57.645 40.000 0.00 0.00 0.00 3.79
25 26 8.466617 CTAGTAGGAGGAAAAGAGTAATGCTA 57.533 38.462 0.00 0.00 0.00 3.49
26 27 7.922699 AGTAGGAGGAAAAGAGTAATGCTAT 57.077 36.000 0.00 0.00 0.00 2.97
28 29 8.862085 AGTAGGAGGAAAAGAGTAATGCTATAC 58.138 37.037 0.00 0.00 0.00 1.47
29 30 7.676683 AGGAGGAAAAGAGTAATGCTATACA 57.323 36.000 2.98 0.00 0.00 2.29
30 31 8.268878 AGGAGGAAAAGAGTAATGCTATACAT 57.731 34.615 2.98 0.00 42.30 2.29
31 32 9.381038 AGGAGGAAAAGAGTAATGCTATACATA 57.619 33.333 2.98 0.00 38.34 2.29
32 33 9.425577 GGAGGAAAAGAGTAATGCTATACATAC 57.574 37.037 2.98 0.00 38.34 2.39
33 34 9.982651 GAGGAAAAGAGTAATGCTATACATACA 57.017 33.333 2.98 0.00 38.34 2.29
63 64 9.581099 GTTTATATGGATTTTACAAACAGGTGG 57.419 33.333 0.00 0.00 0.00 4.61
64 65 6.790232 ATATGGATTTTACAAACAGGTGGG 57.210 37.500 0.00 0.00 0.00 4.61
65 66 3.917300 TGGATTTTACAAACAGGTGGGT 58.083 40.909 0.00 0.00 0.00 4.51
66 67 4.290942 TGGATTTTACAAACAGGTGGGTT 58.709 39.130 0.00 0.00 0.00 4.11
67 68 4.100189 TGGATTTTACAAACAGGTGGGTTG 59.900 41.667 0.00 0.00 0.00 3.77
68 69 4.100344 GGATTTTACAAACAGGTGGGTTGT 59.900 41.667 3.06 3.06 0.00 3.32
69 70 4.457834 TTTTACAAACAGGTGGGTTGTG 57.542 40.909 7.93 0.00 0.00 3.33
70 71 3.367646 TTACAAACAGGTGGGTTGTGA 57.632 42.857 7.93 0.00 0.00 3.58
71 72 2.452600 ACAAACAGGTGGGTTGTGAT 57.547 45.000 0.00 0.00 0.00 3.06
72 73 2.745968 ACAAACAGGTGGGTTGTGATT 58.254 42.857 0.00 0.00 0.00 2.57
73 74 2.430332 ACAAACAGGTGGGTTGTGATTG 59.570 45.455 0.00 0.00 0.00 2.67
74 75 1.703411 AACAGGTGGGTTGTGATTGG 58.297 50.000 0.00 0.00 0.00 3.16
75 76 0.850100 ACAGGTGGGTTGTGATTGGA 59.150 50.000 0.00 0.00 0.00 3.53
76 77 1.202927 ACAGGTGGGTTGTGATTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
77 78 0.405585 AGGTGGGTTGTGATTGGAGG 59.594 55.000 0.00 0.00 0.00 4.30
78 79 0.112412 GGTGGGTTGTGATTGGAGGT 59.888 55.000 0.00 0.00 0.00 3.85
79 80 1.480498 GGTGGGTTGTGATTGGAGGTT 60.480 52.381 0.00 0.00 0.00 3.50
80 81 2.224917 GGTGGGTTGTGATTGGAGGTTA 60.225 50.000 0.00 0.00 0.00 2.85
81 82 3.492337 GTGGGTTGTGATTGGAGGTTAA 58.508 45.455 0.00 0.00 0.00 2.01
82 83 3.506067 GTGGGTTGTGATTGGAGGTTAAG 59.494 47.826 0.00 0.00 0.00 1.85
83 84 3.089284 GGGTTGTGATTGGAGGTTAAGG 58.911 50.000 0.00 0.00 0.00 2.69
84 85 3.089284 GGTTGTGATTGGAGGTTAAGGG 58.911 50.000 0.00 0.00 0.00 3.95
85 86 3.245122 GGTTGTGATTGGAGGTTAAGGGA 60.245 47.826 0.00 0.00 0.00 4.20
86 87 4.010349 GTTGTGATTGGAGGTTAAGGGAG 58.990 47.826 0.00 0.00 0.00 4.30
87 88 3.526899 TGTGATTGGAGGTTAAGGGAGA 58.473 45.455 0.00 0.00 0.00 3.71
88 89 3.519510 TGTGATTGGAGGTTAAGGGAGAG 59.480 47.826 0.00 0.00 0.00 3.20
89 90 3.115390 TGATTGGAGGTTAAGGGAGAGG 58.885 50.000 0.00 0.00 0.00 3.69
90 91 3.246350 TGATTGGAGGTTAAGGGAGAGGA 60.246 47.826 0.00 0.00 0.00 3.71
91 92 2.552093 TGGAGGTTAAGGGAGAGGAG 57.448 55.000 0.00 0.00 0.00 3.69
92 93 1.008449 TGGAGGTTAAGGGAGAGGAGG 59.992 57.143 0.00 0.00 0.00 4.30
93 94 1.693083 GGAGGTTAAGGGAGAGGAGGG 60.693 61.905 0.00 0.00 0.00 4.30
94 95 0.343726 AGGTTAAGGGAGAGGAGGGG 59.656 60.000 0.00 0.00 0.00 4.79
95 96 1.346479 GGTTAAGGGAGAGGAGGGGC 61.346 65.000 0.00 0.00 0.00 5.80
96 97 1.004361 TTAAGGGAGAGGAGGGGCC 59.996 63.158 0.00 0.00 0.00 5.80
97 98 2.562973 TTAAGGGAGAGGAGGGGCCC 62.563 65.000 17.12 17.12 41.00 5.80
99 100 4.523282 GGGAGAGGAGGGGCCCAT 62.523 72.222 27.72 19.67 40.39 4.00
100 101 2.851588 GGAGAGGAGGGGCCCATC 60.852 72.222 28.72 28.72 37.37 3.51
101 102 2.851588 GAGAGGAGGGGCCCATCC 60.852 72.222 42.70 42.70 37.37 3.51
107 108 2.378101 AGGGGCCCATCCTCATGA 59.622 61.111 27.72 0.00 38.00 3.07
108 109 1.309013 AGGGGCCCATCCTCATGAA 60.309 57.895 27.72 0.00 38.00 2.57
109 110 0.925720 AGGGGCCCATCCTCATGAAA 60.926 55.000 27.72 0.00 38.00 2.69
110 111 0.032217 GGGGCCCATCCTCATGAAAA 60.032 55.000 26.86 0.00 34.56 2.29
111 112 1.413517 GGGGCCCATCCTCATGAAAAT 60.414 52.381 26.86 0.00 34.56 1.82
112 113 1.966354 GGGCCCATCCTCATGAAAATC 59.034 52.381 19.95 0.00 34.39 2.17
113 114 2.669781 GGCCCATCCTCATGAAAATCA 58.330 47.619 0.00 0.00 30.57 2.57
114 115 2.626743 GGCCCATCCTCATGAAAATCAG 59.373 50.000 0.00 0.00 30.57 2.90
115 116 2.626743 GCCCATCCTCATGAAAATCAGG 59.373 50.000 0.00 0.00 30.57 3.86
116 117 3.228453 CCCATCCTCATGAAAATCAGGG 58.772 50.000 0.00 0.06 30.57 4.45
117 118 3.117398 CCCATCCTCATGAAAATCAGGGA 60.117 47.826 10.52 6.03 34.49 4.20
118 119 4.539726 CCATCCTCATGAAAATCAGGGAA 58.460 43.478 0.00 0.00 31.17 3.97
119 120 4.583489 CCATCCTCATGAAAATCAGGGAAG 59.417 45.833 0.00 0.00 31.17 3.46
120 121 4.240881 TCCTCATGAAAATCAGGGAAGG 57.759 45.455 0.00 0.00 0.00 3.46
121 122 3.851976 TCCTCATGAAAATCAGGGAAGGA 59.148 43.478 0.00 0.07 0.00 3.36
122 123 4.292041 TCCTCATGAAAATCAGGGAAGGAA 59.708 41.667 0.00 0.00 0.00 3.36
123 124 5.043881 TCCTCATGAAAATCAGGGAAGGAAT 60.044 40.000 0.00 0.00 0.00 3.01
124 125 5.068723 CCTCATGAAAATCAGGGAAGGAATG 59.931 44.000 0.00 0.00 0.00 2.67
125 126 4.957954 TCATGAAAATCAGGGAAGGAATGG 59.042 41.667 0.00 0.00 0.00 3.16
126 127 4.402616 TGAAAATCAGGGAAGGAATGGT 57.597 40.909 0.00 0.00 0.00 3.55
127 128 4.750941 TGAAAATCAGGGAAGGAATGGTT 58.249 39.130 0.00 0.00 0.00 3.67
128 129 5.898120 TGAAAATCAGGGAAGGAATGGTTA 58.102 37.500 0.00 0.00 0.00 2.85
129 130 5.951747 TGAAAATCAGGGAAGGAATGGTTAG 59.048 40.000 0.00 0.00 0.00 2.34
130 131 5.536497 AAATCAGGGAAGGAATGGTTAGT 57.464 39.130 0.00 0.00 0.00 2.24
131 132 5.536497 AATCAGGGAAGGAATGGTTAGTT 57.464 39.130 0.00 0.00 0.00 2.24
132 133 6.652205 AATCAGGGAAGGAATGGTTAGTTA 57.348 37.500 0.00 0.00 0.00 2.24
133 134 5.693769 TCAGGGAAGGAATGGTTAGTTAG 57.306 43.478 0.00 0.00 0.00 2.34
134 135 5.347124 TCAGGGAAGGAATGGTTAGTTAGA 58.653 41.667 0.00 0.00 0.00 2.10
135 136 5.788533 TCAGGGAAGGAATGGTTAGTTAGAA 59.211 40.000 0.00 0.00 0.00 2.10
136 137 6.273730 TCAGGGAAGGAATGGTTAGTTAGAAA 59.726 38.462 0.00 0.00 0.00 2.52
137 138 6.599638 CAGGGAAGGAATGGTTAGTTAGAAAG 59.400 42.308 0.00 0.00 0.00 2.62
138 139 6.504279 AGGGAAGGAATGGTTAGTTAGAAAGA 59.496 38.462 0.00 0.00 0.00 2.52
139 140 7.018249 AGGGAAGGAATGGTTAGTTAGAAAGAA 59.982 37.037 0.00 0.00 0.00 2.52
140 141 7.668469 GGGAAGGAATGGTTAGTTAGAAAGAAA 59.332 37.037 0.00 0.00 0.00 2.52
141 142 9.074576 GGAAGGAATGGTTAGTTAGAAAGAAAA 57.925 33.333 0.00 0.00 0.00 2.29
171 172 4.600012 GCATGTAAGTGCGTGTAAATCT 57.400 40.909 0.00 0.00 35.10 2.40
172 173 4.969816 GCATGTAAGTGCGTGTAAATCTT 58.030 39.130 0.00 0.00 35.10 2.40
173 174 5.390613 GCATGTAAGTGCGTGTAAATCTTT 58.609 37.500 0.00 0.00 35.10 2.52
174 175 5.283717 GCATGTAAGTGCGTGTAAATCTTTG 59.716 40.000 0.00 0.00 35.10 2.77
175 176 5.994887 TGTAAGTGCGTGTAAATCTTTGT 57.005 34.783 0.00 0.00 0.00 2.83
176 177 7.514805 CATGTAAGTGCGTGTAAATCTTTGTA 58.485 34.615 0.00 0.00 0.00 2.41
177 178 7.661127 TGTAAGTGCGTGTAAATCTTTGTAT 57.339 32.000 0.00 0.00 0.00 2.29
178 179 7.514805 TGTAAGTGCGTGTAAATCTTTGTATG 58.485 34.615 0.00 0.00 0.00 2.39
179 180 6.554334 AAGTGCGTGTAAATCTTTGTATGT 57.446 33.333 0.00 0.00 0.00 2.29
180 181 6.554334 AGTGCGTGTAAATCTTTGTATGTT 57.446 33.333 0.00 0.00 0.00 2.71
181 182 6.966021 AGTGCGTGTAAATCTTTGTATGTTT 58.034 32.000 0.00 0.00 0.00 2.83
182 183 8.090250 AGTGCGTGTAAATCTTTGTATGTTTA 57.910 30.769 0.00 0.00 0.00 2.01
183 184 8.227791 AGTGCGTGTAAATCTTTGTATGTTTAG 58.772 33.333 0.00 0.00 0.00 1.85
184 185 7.007099 GTGCGTGTAAATCTTTGTATGTTTAGC 59.993 37.037 0.00 0.00 0.00 3.09
185 186 7.018826 GCGTGTAAATCTTTGTATGTTTAGCA 58.981 34.615 0.00 0.00 0.00 3.49
186 187 7.696453 GCGTGTAAATCTTTGTATGTTTAGCAT 59.304 33.333 0.00 0.00 41.42 3.79
187 188 9.554724 CGTGTAAATCTTTGTATGTTTAGCATT 57.445 29.630 0.00 0.00 38.94 3.56
192 193 8.761575 AATCTTTGTATGTTTAGCATTGTTGG 57.238 30.769 0.00 0.00 38.94 3.77
193 194 6.686630 TCTTTGTATGTTTAGCATTGTTGGG 58.313 36.000 0.00 0.00 38.94 4.12
194 195 6.491745 TCTTTGTATGTTTAGCATTGTTGGGA 59.508 34.615 0.00 0.00 38.94 4.37
195 196 5.895636 TGTATGTTTAGCATTGTTGGGAG 57.104 39.130 0.00 0.00 38.94 4.30
196 197 4.704540 TGTATGTTTAGCATTGTTGGGAGG 59.295 41.667 0.00 0.00 38.94 4.30
197 198 3.517296 TGTTTAGCATTGTTGGGAGGA 57.483 42.857 0.00 0.00 0.00 3.71
198 199 3.838565 TGTTTAGCATTGTTGGGAGGAA 58.161 40.909 0.00 0.00 0.00 3.36
199 200 4.219115 TGTTTAGCATTGTTGGGAGGAAA 58.781 39.130 0.00 0.00 0.00 3.13
200 201 4.651503 TGTTTAGCATTGTTGGGAGGAAAA 59.348 37.500 0.00 0.00 0.00 2.29
201 202 5.129485 TGTTTAGCATTGTTGGGAGGAAAAA 59.871 36.000 0.00 0.00 0.00 1.94
202 203 5.467035 TTAGCATTGTTGGGAGGAAAAAG 57.533 39.130 0.00 0.00 0.00 2.27
203 204 3.575805 AGCATTGTTGGGAGGAAAAAGA 58.424 40.909 0.00 0.00 0.00 2.52
204 205 3.575687 AGCATTGTTGGGAGGAAAAAGAG 59.424 43.478 0.00 0.00 0.00 2.85
205 206 3.306294 GCATTGTTGGGAGGAAAAAGAGG 60.306 47.826 0.00 0.00 0.00 3.69
206 207 2.675658 TGTTGGGAGGAAAAAGAGGG 57.324 50.000 0.00 0.00 0.00 4.30
207 208 2.140224 TGTTGGGAGGAAAAAGAGGGA 58.860 47.619 0.00 0.00 0.00 4.20
208 209 2.108250 TGTTGGGAGGAAAAAGAGGGAG 59.892 50.000 0.00 0.00 0.00 4.30
209 210 0.698818 TGGGAGGAAAAAGAGGGAGC 59.301 55.000 0.00 0.00 0.00 4.70
210 211 0.698818 GGGAGGAAAAAGAGGGAGCA 59.301 55.000 0.00 0.00 0.00 4.26
211 212 1.075536 GGGAGGAAAAAGAGGGAGCAA 59.924 52.381 0.00 0.00 0.00 3.91
212 213 2.490902 GGGAGGAAAAAGAGGGAGCAAA 60.491 50.000 0.00 0.00 0.00 3.68
213 214 2.558795 GGAGGAAAAAGAGGGAGCAAAC 59.441 50.000 0.00 0.00 0.00 2.93
216 217 2.035961 GGAAAAAGAGGGAGCAAACCAC 59.964 50.000 0.00 0.00 0.00 4.16
245 246 2.270850 GCCCAACGGGTCATGCTA 59.729 61.111 0.06 0.00 46.51 3.49
246 247 1.819632 GCCCAACGGGTCATGCTAG 60.820 63.158 0.06 0.00 46.51 3.42
260 261 2.768253 TGCTAGTAACATGCAGCTGT 57.232 45.000 16.64 0.00 35.05 4.40
327 330 3.837570 GAAACCCGCTCCAACCGGT 62.838 63.158 0.00 0.00 44.13 5.28
336 339 2.738521 CCAACCGGTCGCTGACAG 60.739 66.667 8.04 0.00 33.68 3.51
355 358 1.299976 GGTAGGCCCACAACTCAGG 59.700 63.158 3.03 0.00 0.00 3.86
442 454 3.719816 GGGAACCGAAAACCTGTCT 57.280 52.632 0.00 0.00 40.86 3.41
443 455 1.520494 GGGAACCGAAAACCTGTCTC 58.480 55.000 0.00 0.00 40.86 3.36
444 456 1.520494 GGAACCGAAAACCTGTCTCC 58.480 55.000 0.00 0.00 0.00 3.71
446 458 2.486727 GGAACCGAAAACCTGTCTCCTT 60.487 50.000 0.00 0.00 0.00 3.36
447 459 3.244318 GGAACCGAAAACCTGTCTCCTTA 60.244 47.826 0.00 0.00 0.00 2.69
448 460 3.679824 ACCGAAAACCTGTCTCCTTAG 57.320 47.619 0.00 0.00 0.00 2.18
449 461 2.970640 ACCGAAAACCTGTCTCCTTAGT 59.029 45.455 0.00 0.00 0.00 2.24
450 462 4.154942 ACCGAAAACCTGTCTCCTTAGTA 58.845 43.478 0.00 0.00 0.00 1.82
451 463 4.220163 ACCGAAAACCTGTCTCCTTAGTAG 59.780 45.833 0.00 0.00 0.00 2.57
452 464 4.174762 CGAAAACCTGTCTCCTTAGTAGC 58.825 47.826 0.00 0.00 0.00 3.58
453 465 4.082136 CGAAAACCTGTCTCCTTAGTAGCT 60.082 45.833 0.00 0.00 0.00 3.32
454 466 4.810191 AAACCTGTCTCCTTAGTAGCTG 57.190 45.455 0.00 0.00 0.00 4.24
455 467 2.741145 ACCTGTCTCCTTAGTAGCTGG 58.259 52.381 0.00 0.00 0.00 4.85
456 468 1.410882 CCTGTCTCCTTAGTAGCTGGC 59.589 57.143 0.00 0.00 0.00 4.85
457 469 2.383855 CTGTCTCCTTAGTAGCTGGCT 58.616 52.381 0.00 0.00 0.00 4.75
458 470 2.100584 CTGTCTCCTTAGTAGCTGGCTG 59.899 54.545 5.25 0.00 0.00 4.85
459 471 2.291605 TGTCTCCTTAGTAGCTGGCTGA 60.292 50.000 5.25 0.00 0.00 4.26
462 474 2.697751 CTCCTTAGTAGCTGGCTGACAT 59.302 50.000 5.25 0.00 0.00 3.06
463 475 2.432146 TCCTTAGTAGCTGGCTGACATG 59.568 50.000 5.25 0.00 0.00 3.21
465 477 0.103026 TAGTAGCTGGCTGACATGCG 59.897 55.000 5.25 0.00 0.00 4.73
634 3257 2.262915 CGCTGTCGCTCCTTTCCT 59.737 61.111 0.00 0.00 0.00 3.36
924 3564 4.135153 CGCTGCCGCACTAGGACT 62.135 66.667 0.00 0.00 35.30 3.85
925 3565 2.510238 GCTGCCGCACTAGGACTG 60.510 66.667 0.00 0.00 35.78 3.51
938 3581 0.833834 AGGACTGGTGCTGCAGTAGT 60.834 55.000 16.64 15.92 0.00 2.73
940 3583 1.404315 GGACTGGTGCTGCAGTAGTAC 60.404 57.143 16.64 13.64 40.83 2.73
941 3584 0.243907 ACTGGTGCTGCAGTAGTACG 59.756 55.000 16.64 2.34 42.28 3.67
942 3585 0.243907 CTGGTGCTGCAGTAGTACGT 59.756 55.000 16.64 0.00 42.28 3.57
943 3586 1.471287 CTGGTGCTGCAGTAGTACGTA 59.529 52.381 16.64 0.00 42.28 3.57
944 3587 1.200716 TGGTGCTGCAGTAGTACGTAC 59.799 52.381 18.10 18.10 42.28 3.67
945 3588 1.468736 GGTGCTGCAGTAGTACGTACC 60.469 57.143 21.80 7.94 42.28 3.34
946 3589 1.200716 GTGCTGCAGTAGTACGTACCA 59.799 52.381 21.80 5.84 32.30 3.25
947 3590 1.200716 TGCTGCAGTAGTACGTACCAC 59.799 52.381 21.80 18.45 31.06 4.16
948 3591 1.471684 GCTGCAGTAGTACGTACCACT 59.528 52.381 19.26 19.26 31.06 4.00
952 3595 4.071423 TGCAGTAGTACGTACCACTGTAA 58.929 43.478 37.16 28.40 44.29 2.41
971 3614 1.286880 CAAGGAAGCAAAGCGGGTG 59.713 57.895 0.00 0.00 0.00 4.61
1004 3657 2.892425 CGGCCGGCTTCTGATGTC 60.892 66.667 28.56 4.75 0.00 3.06
1059 3712 2.267642 CCTGGGAATCGAACGGCA 59.732 61.111 0.00 0.00 0.00 5.69
1491 4147 1.204146 CCCACCACCTGCACTACTAT 58.796 55.000 0.00 0.00 0.00 2.12
1497 4153 1.141657 CACCTGCACTACTATGGGCAT 59.858 52.381 0.00 0.00 35.45 4.40
1543 4199 1.879380 CGTTCAAAGGTGAGATGGCAA 59.121 47.619 0.00 0.00 34.49 4.52
1592 4248 3.875727 TCGGAGCAGATACAGTACAGTAC 59.124 47.826 2.05 2.05 0.00 2.73
1593 4249 3.626217 CGGAGCAGATACAGTACAGTACA 59.374 47.826 13.37 0.00 0.00 2.90
1594 4250 4.496010 CGGAGCAGATACAGTACAGTACAC 60.496 50.000 13.37 0.00 0.00 2.90
1614 4270 4.157840 ACACTACAGATCTCATGTGCGTTA 59.842 41.667 14.68 0.00 32.02 3.18
1711 4367 4.261581 GTGACGTACAAGTATGACTTACGC 59.738 45.833 12.31 7.74 41.37 4.42
1714 4370 3.717890 CGTACAAGTATGACTTACGCTCG 59.282 47.826 2.72 0.00 36.03 5.03
1726 4383 2.512485 TACGCTCGAGTTTTTGGTGA 57.488 45.000 15.13 0.00 0.00 4.02
1735 4392 4.938832 TCGAGTTTTTGGTGACTTCAAGAA 59.061 37.500 0.00 0.00 0.00 2.52
1998 5091 7.067372 TCTGATTTATACAAGGCAAATCTGTGG 59.933 37.037 7.54 0.00 38.75 4.17
2031 5124 2.808543 CCCTCCTTTTCGAAGTGAGTTG 59.191 50.000 15.23 6.52 0.00 3.16
2037 5130 4.024302 CCTTTTCGAAGTGAGTTGGTAACC 60.024 45.833 0.00 0.00 0.00 2.85
2040 5133 5.733620 TTCGAAGTGAGTTGGTAACCTAT 57.266 39.130 0.00 0.00 0.00 2.57
2042 5135 5.475719 TCGAAGTGAGTTGGTAACCTATTG 58.524 41.667 0.00 0.00 0.00 1.90
2058 5151 6.839124 ACCTATTGTCAGCAATGAAAATGA 57.161 33.333 4.29 0.00 44.32 2.57
2085 5178 7.724305 TTACTTCATTCTTAAACTTCGTGCT 57.276 32.000 0.00 0.00 0.00 4.40
2093 5186 9.559958 CATTCTTAAACTTCGTGCTATCATTTT 57.440 29.630 0.00 0.00 0.00 1.82
2274 5367 7.052873 AGATGAATTCACATCCTTCCACTAAG 58.947 38.462 11.07 0.00 45.20 2.18
2276 5369 4.851639 ATTCACATCCTTCCACTAAGCT 57.148 40.909 0.00 0.00 33.49 3.74
2415 5508 7.148639 TGCACTTTTACTTATGAAGAGTTAGCG 60.149 37.037 0.00 0.00 0.00 4.26
2607 5700 6.863275 AGTACATCATAAACATCTCGTGACA 58.137 36.000 0.00 0.00 0.00 3.58
2673 5766 4.822036 TGAGTTTGTTCCCAATAACACG 57.178 40.909 0.00 0.00 39.02 4.49
2686 5779 7.566569 TCCCAATAACACGTTAGAATTCCATA 58.433 34.615 0.65 0.00 0.00 2.74
2705 5798 6.748333 CCATATACATGGTATGGCTTCTTG 57.252 41.667 20.03 2.94 45.92 3.02
2762 5855 7.047891 TCAGAATGCTCTTTAATATTGTCCGT 58.952 34.615 0.00 0.00 34.76 4.69
2763 5856 8.201464 TCAGAATGCTCTTTAATATTGTCCGTA 58.799 33.333 0.00 0.00 34.76 4.02
2777 5870 4.566545 TGTCCGTAAAAGTGAACTACGA 57.433 40.909 5.95 0.00 40.61 3.43
2784 5877 6.183359 CCGTAAAAGTGAACTACGACATCTTC 60.183 42.308 5.95 0.00 40.61 2.87
2843 5936 9.726438 AATATCCTAGATATTGCCAGTTTGTAC 57.274 33.333 8.65 0.00 0.00 2.90
2848 5941 8.993121 CCTAGATATTGCCAGTTTGTACTTATG 58.007 37.037 0.00 0.00 30.26 1.90
2849 5942 9.764363 CTAGATATTGCCAGTTTGTACTTATGA 57.236 33.333 0.00 0.00 30.26 2.15
2850 5943 8.668510 AGATATTGCCAGTTTGTACTTATGAG 57.331 34.615 0.00 0.00 30.26 2.90
2851 5944 8.267894 AGATATTGCCAGTTTGTACTTATGAGT 58.732 33.333 0.00 0.00 39.97 3.41
2852 5945 8.807948 ATATTGCCAGTTTGTACTTATGAGTT 57.192 30.769 0.00 0.00 37.33 3.01
2853 5946 5.940192 TGCCAGTTTGTACTTATGAGTTG 57.060 39.130 0.00 0.00 37.33 3.16
2854 5947 4.215399 TGCCAGTTTGTACTTATGAGTTGC 59.785 41.667 0.00 0.00 37.33 4.17
2855 5948 4.379499 GCCAGTTTGTACTTATGAGTTGCC 60.379 45.833 0.00 0.00 37.33 4.52
2856 5949 4.142902 CCAGTTTGTACTTATGAGTTGCCG 60.143 45.833 0.00 0.00 37.33 5.69
2857 5950 4.451096 CAGTTTGTACTTATGAGTTGCCGT 59.549 41.667 0.00 0.00 37.33 5.68
2858 5951 5.636121 CAGTTTGTACTTATGAGTTGCCGTA 59.364 40.000 0.00 0.00 37.33 4.02
2859 5952 6.312918 CAGTTTGTACTTATGAGTTGCCGTAT 59.687 38.462 0.00 0.00 37.33 3.06
2860 5953 6.312918 AGTTTGTACTTATGAGTTGCCGTATG 59.687 38.462 0.00 0.00 37.33 2.39
2861 5954 5.585820 TGTACTTATGAGTTGCCGTATGA 57.414 39.130 0.00 0.00 37.33 2.15
2862 5955 5.588240 TGTACTTATGAGTTGCCGTATGAG 58.412 41.667 0.00 0.00 37.33 2.90
2863 5956 4.737855 ACTTATGAGTTGCCGTATGAGT 57.262 40.909 0.00 0.00 29.87 3.41
2864 5957 5.086104 ACTTATGAGTTGCCGTATGAGTT 57.914 39.130 0.00 0.00 29.87 3.01
2865 5958 4.870426 ACTTATGAGTTGCCGTATGAGTTG 59.130 41.667 0.00 0.00 29.87 3.16
2866 5959 2.093306 TGAGTTGCCGTATGAGTTGG 57.907 50.000 0.00 0.00 0.00 3.77
2884 5977 1.621317 TGGAGTTGCCGTATGAGTTGA 59.379 47.619 0.00 0.00 40.66 3.18
3016 6110 4.325028 TTTGAGCAGTTGCATTGTTCAT 57.675 36.364 15.53 0.00 45.16 2.57
3057 6151 6.240894 ACTGCAAGAGAGTTTCATTAATGGA 58.759 36.000 15.36 3.64 37.43 3.41
3167 6261 5.763204 TGTCAAACTGGGAAGATACAACTTC 59.237 40.000 0.00 0.00 43.60 3.01
3222 6316 6.658188 TTCCAGGTTTATTGGTTACCTTTG 57.342 37.500 2.07 0.00 40.24 2.77
3304 6398 4.885413 TCATTTGGTTTGCATTCTCTTGG 58.115 39.130 0.00 0.00 0.00 3.61
3312 6406 1.551430 TGCATTCTCTTGGGCATTTGG 59.449 47.619 0.00 0.00 0.00 3.28
3619 6714 7.069950 ACAGATGTGAAGCTAAGGTATGATACA 59.930 37.037 4.83 0.00 0.00 2.29
3731 6827 5.458041 AAATCTTGAATGTCAGTGGTTGG 57.542 39.130 0.00 0.00 0.00 3.77
3941 7037 8.947115 GCAAAGTTAACCTCTGATAATAACACT 58.053 33.333 0.88 0.00 0.00 3.55
4141 7242 4.696479 ATTACTGCCCTGATAGTCTTGG 57.304 45.455 0.00 0.00 0.00 3.61
4371 7473 8.697507 AATTCATTCTTGTTGTTTCTAGTCCT 57.302 30.769 0.00 0.00 0.00 3.85
4372 7474 9.793259 AATTCATTCTTGTTGTTTCTAGTCCTA 57.207 29.630 0.00 0.00 0.00 2.94
4393 7506 6.447084 TCCTATATGGGTCTTTTTGGAAGAGT 59.553 38.462 4.86 0.00 36.20 3.24
4395 7508 8.440771 CCTATATGGGTCTTTTTGGAAGAGTAT 58.559 37.037 0.00 0.00 0.00 2.12
4463 7580 7.039270 ACAAAACTTTACCAAGAAACACCATC 58.961 34.615 0.00 0.00 33.72 3.51
4513 7680 2.254152 TGAGGGCTGTCTTGGACTAT 57.746 50.000 0.00 0.00 33.15 2.12
4526 7693 8.301730 TGTCTTGGACTATTTAAGTAACAACG 57.698 34.615 0.00 0.00 39.07 4.10
4564 7732 8.758829 TCTTCATAAGTTACTTGCTATTCCTCA 58.241 33.333 8.00 0.00 0.00 3.86
4593 7761 5.661056 TGGACTCGATTTTCTCTGTATGT 57.339 39.130 0.00 0.00 0.00 2.29
4622 7790 4.454728 TGGCCTTTGCACTTCATATTTC 57.545 40.909 3.32 0.00 40.13 2.17
4645 7813 7.273188 TCACTCGTTGTATTTATTCTTGTCG 57.727 36.000 0.00 0.00 0.00 4.35
4651 7819 6.090358 CGTTGTATTTATTCTTGTCGGAGTGT 59.910 38.462 0.00 0.00 0.00 3.55
4727 7895 4.503714 TCTGTCTGTCCCTTTCTTTGTT 57.496 40.909 0.00 0.00 0.00 2.83
4731 7899 6.710744 TCTGTCTGTCCCTTTCTTTGTTAATC 59.289 38.462 0.00 0.00 0.00 1.75
4734 7902 7.013274 TGTCTGTCCCTTTCTTTGTTAATCTTG 59.987 37.037 0.00 0.00 0.00 3.02
4735 7903 6.490040 TCTGTCCCTTTCTTTGTTAATCTTGG 59.510 38.462 0.00 0.00 0.00 3.61
4737 7905 7.010160 TGTCCCTTTCTTTGTTAATCTTGGAT 58.990 34.615 0.00 0.00 0.00 3.41
4738 7906 8.167392 TGTCCCTTTCTTTGTTAATCTTGGATA 58.833 33.333 0.00 0.00 0.00 2.59
4762 7930 7.921041 ACATCTATTTGAGTTGGATCCTCTA 57.079 36.000 14.23 0.00 0.00 2.43
4948 8120 1.745087 CGCATGAGCCAGGTACATTTT 59.255 47.619 0.00 0.00 37.52 1.82
4949 8121 2.223340 CGCATGAGCCAGGTACATTTTC 60.223 50.000 0.00 0.00 37.52 2.29
4990 8178 4.800784 TCGTCGACACAAATTCATCACTA 58.199 39.130 17.16 0.00 0.00 2.74
5031 8219 6.017026 TCGCTGTTGTATCCTAGATAGAGTTG 60.017 42.308 0.00 0.00 0.00 3.16
5054 8242 2.034053 GCTAACCTCGATCCTCTGTGAG 59.966 54.545 0.00 0.00 0.00 3.51
5144 8332 1.224315 CAGCCGGTTCATGGGATCA 59.776 57.895 1.90 0.00 0.00 2.92
5216 8404 3.854669 AGGAAGATGGCGCTCGGG 61.855 66.667 7.64 0.00 0.00 5.14
5276 8470 2.125753 GAGCACGAGCACCAGGAG 60.126 66.667 7.77 0.00 45.49 3.69
5336 8530 0.252742 AGGTGGAGTTGGGGACTAGG 60.253 60.000 0.00 0.00 39.19 3.02
5351 8548 1.278699 ACTAGGAAGAGAGACGACGGT 59.721 52.381 0.00 0.00 0.00 4.83
5394 8595 3.703001 TGAGATGACCACTTTCCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
5398 8599 0.395312 TGACCACTTTCCCTTCCGTC 59.605 55.000 0.00 0.00 0.00 4.79
5406 8607 0.033405 TTCCCTTCCGTCGGAGAGAT 60.033 55.000 14.79 0.00 36.95 2.75
5409 8610 1.471676 CCCTTCCGTCGGAGAGATTTG 60.472 57.143 14.79 3.08 36.95 2.32
5412 8613 1.835494 TCCGTCGGAGAGATTTGACT 58.165 50.000 10.71 0.00 36.95 3.41
5417 8618 3.119814 CGTCGGAGAGATTTGACTTCAGA 60.120 47.826 0.00 0.00 36.95 3.27
5543 8756 1.810959 TTGGTAGCCGCATTTACGTT 58.189 45.000 0.00 0.00 0.00 3.99
5548 8761 2.094762 AGCCGCATTTACGTTCTTCT 57.905 45.000 0.00 0.00 0.00 2.85
5549 8762 2.423577 AGCCGCATTTACGTTCTTCTT 58.576 42.857 0.00 0.00 0.00 2.52
5550 8763 2.812011 AGCCGCATTTACGTTCTTCTTT 59.188 40.909 0.00 0.00 0.00 2.52
5551 8764 3.120304 AGCCGCATTTACGTTCTTCTTTC 60.120 43.478 0.00 0.00 0.00 2.62
5552 8765 3.120304 GCCGCATTTACGTTCTTCTTTCT 60.120 43.478 0.00 0.00 0.00 2.52
5553 8766 4.394795 CCGCATTTACGTTCTTCTTTCTG 58.605 43.478 0.00 0.00 0.00 3.02
5554 8767 4.084013 CCGCATTTACGTTCTTCTTTCTGT 60.084 41.667 0.00 0.00 0.00 3.41
5555 8768 5.440685 CGCATTTACGTTCTTCTTTCTGTT 58.559 37.500 0.00 0.00 0.00 3.16
5556 8769 5.560378 CGCATTTACGTTCTTCTTTCTGTTC 59.440 40.000 0.00 0.00 0.00 3.18
5557 8770 6.427150 GCATTTACGTTCTTCTTTCTGTTCA 58.573 36.000 0.00 0.00 0.00 3.18
5558 8771 6.357240 GCATTTACGTTCTTCTTTCTGTTCAC 59.643 38.462 0.00 0.00 0.00 3.18
5559 8772 5.978934 TTACGTTCTTCTTTCTGTTCACC 57.021 39.130 0.00 0.00 0.00 4.02
5560 8773 3.869065 ACGTTCTTCTTTCTGTTCACCA 58.131 40.909 0.00 0.00 0.00 4.17
5561 8774 4.258543 ACGTTCTTCTTTCTGTTCACCAA 58.741 39.130 0.00 0.00 0.00 3.67
5562 8775 4.881850 ACGTTCTTCTTTCTGTTCACCAAT 59.118 37.500 0.00 0.00 0.00 3.16
5563 8776 5.357032 ACGTTCTTCTTTCTGTTCACCAATT 59.643 36.000 0.00 0.00 0.00 2.32
5564 8777 5.909610 CGTTCTTCTTTCTGTTCACCAATTC 59.090 40.000 0.00 0.00 0.00 2.17
5565 8778 6.209361 GTTCTTCTTTCTGTTCACCAATTCC 58.791 40.000 0.00 0.00 0.00 3.01
5573 8786 2.225091 TGTTCACCAATTCCCTCTGCAT 60.225 45.455 0.00 0.00 0.00 3.96
5580 8793 3.633986 CCAATTCCCTCTGCATTTCTACC 59.366 47.826 0.00 0.00 0.00 3.18
5597 8810 0.110486 ACCTCCGTTTCCACTGCATT 59.890 50.000 0.00 0.00 0.00 3.56
5623 8837 5.654497 TCCGTAGATGCATGATCATACATC 58.346 41.667 30.00 30.00 40.32 3.06
5648 8863 1.597027 CGGCCGTCTGAACTTGGTT 60.597 57.895 19.50 0.00 0.00 3.67
5666 8881 3.321682 TGGTTTCATGCTTGGAAGAAAGG 59.678 43.478 0.00 0.00 31.35 3.11
5684 8899 2.973694 GGTAACTGGCCAACGAGATA 57.026 50.000 7.01 0.00 0.00 1.98
5688 8938 1.557099 ACTGGCCAACGAGATACAGA 58.443 50.000 7.01 0.00 0.00 3.41
5694 8944 2.826428 CCAACGAGATACAGACATGGG 58.174 52.381 0.00 0.00 0.00 4.00
5696 8946 3.383505 CCAACGAGATACAGACATGGGTA 59.616 47.826 0.00 0.00 0.00 3.69
5709 8959 1.559065 ATGGGTACGTTGGACCAGGG 61.559 60.000 8.21 0.00 38.86 4.45
5856 9118 8.854614 AACTAAGTAGCATTCAGAATCTGTTT 57.145 30.769 10.36 0.00 32.61 2.83
5868 9130 5.827797 TCAGAATCTGTTTACAAAAGGTGCT 59.172 36.000 10.36 0.00 32.61 4.40
5878 9140 0.744281 AAAAGGTGCTGGTCGGTTTG 59.256 50.000 0.00 0.00 0.00 2.93
5910 9172 3.392769 TGAGTTTCAACGTTGTTTCCG 57.607 42.857 26.47 1.19 0.00 4.30
5923 9188 4.303282 GTTGTTTCCGTTACATGCCAATT 58.697 39.130 0.00 0.00 0.00 2.32
5927 9192 4.855715 TTCCGTTACATGCCAATTTTCA 57.144 36.364 0.00 0.00 0.00 2.69
5928 9193 5.398603 TTCCGTTACATGCCAATTTTCAT 57.601 34.783 0.00 0.00 0.00 2.57
5929 9194 6.516739 TTCCGTTACATGCCAATTTTCATA 57.483 33.333 0.00 0.00 0.00 2.15
5964 9229 7.346751 ACAAACATTAGGTGTGTCAATCTTT 57.653 32.000 0.00 0.00 44.95 2.52
5965 9230 7.781056 ACAAACATTAGGTGTGTCAATCTTTT 58.219 30.769 0.00 0.00 44.95 2.27
5966 9231 8.257306 ACAAACATTAGGTGTGTCAATCTTTTT 58.743 29.630 0.00 0.00 44.95 1.94
5983 9248 2.721945 TTTTTGCGGGGTAGGTGTG 58.278 52.632 0.00 0.00 0.00 3.82
5985 9250 0.535553 TTTTGCGGGGTAGGTGTGTC 60.536 55.000 0.00 0.00 0.00 3.67
5989 9822 0.322187 GCGGGGTAGGTGTGTCAATT 60.322 55.000 0.00 0.00 0.00 2.32
6027 9864 2.158900 CGACCCCTGCATTCATTCTAGT 60.159 50.000 0.00 0.00 0.00 2.57
6028 9865 3.471680 GACCCCTGCATTCATTCTAGTC 58.528 50.000 0.00 0.00 0.00 2.59
6038 9875 8.709386 TGCATTCATTCTAGTCTAACTTTCTC 57.291 34.615 0.00 0.00 0.00 2.87
6053 9890 8.248945 TCTAACTTTCTCCGTAAAATCTGTAGG 58.751 37.037 0.00 0.00 0.00 3.18
6054 9891 6.356186 ACTTTCTCCGTAAAATCTGTAGGT 57.644 37.500 0.00 0.00 0.00 3.08
6056 9893 4.119442 TCTCCGTAAAATCTGTAGGTGC 57.881 45.455 0.00 0.00 0.00 5.01
6059 9896 3.259876 TCCGTAAAATCTGTAGGTGCAGT 59.740 43.478 0.00 0.00 37.70 4.40
6060 9897 4.463539 TCCGTAAAATCTGTAGGTGCAGTA 59.536 41.667 0.00 0.00 37.70 2.74
6062 9899 5.408356 CGTAAAATCTGTAGGTGCAGTAGT 58.592 41.667 0.00 0.00 37.70 2.73
6063 9900 5.515626 CGTAAAATCTGTAGGTGCAGTAGTC 59.484 44.000 0.00 0.00 37.70 2.59
6065 9902 1.460504 TCTGTAGGTGCAGTAGTCGG 58.539 55.000 0.00 0.00 37.70 4.79
6066 9903 0.179134 CTGTAGGTGCAGTAGTCGGC 60.179 60.000 0.00 0.00 35.44 5.54
6067 9904 0.896479 TGTAGGTGCAGTAGTCGGCA 60.896 55.000 0.00 0.00 41.89 5.69
6069 9906 0.611062 TAGGTGCAGTAGTCGGCAGT 60.611 55.000 0.00 0.00 44.37 4.40
6071 9908 0.179134 GGTGCAGTAGTCGGCAGTAG 60.179 60.000 0.00 0.00 44.37 2.57
6072 9909 0.526662 GTGCAGTAGTCGGCAGTAGT 59.473 55.000 0.00 0.00 44.37 2.73
6082 9947 7.011763 CAGTAGTCGGCAGTAGTAGTACATTAA 59.988 40.741 10.33 0.00 0.00 1.40
6277 10188 9.738832 TCGACGATAAATATGAAACAATACTGA 57.261 29.630 0.00 0.00 0.00 3.41
6278 10189 9.995379 CGACGATAAATATGAAACAATACTGAG 57.005 33.333 0.00 0.00 0.00 3.35
6280 10191 9.832445 ACGATAAATATGAAACAATACTGAGGT 57.168 29.630 0.00 0.00 0.00 3.85
6286 10197 6.759497 ATGAAACAATACTGAGGTTAAGGC 57.241 37.500 0.00 0.00 0.00 4.35
6287 10198 5.007682 TGAAACAATACTGAGGTTAAGGCC 58.992 41.667 0.00 0.00 0.00 5.19
6288 10199 3.646736 ACAATACTGAGGTTAAGGCCC 57.353 47.619 0.00 0.00 0.00 5.80
6289 10200 3.190439 ACAATACTGAGGTTAAGGCCCT 58.810 45.455 0.00 0.00 34.11 5.19
6290 10201 3.591977 ACAATACTGAGGTTAAGGCCCTT 59.408 43.478 0.00 0.00 30.60 3.95
6291 10202 4.786454 ACAATACTGAGGTTAAGGCCCTTA 59.214 41.667 0.00 0.00 30.60 2.69
6292 10203 5.432060 ACAATACTGAGGTTAAGGCCCTTAT 59.568 40.000 3.54 0.00 30.60 1.73
6293 10204 3.933861 ACTGAGGTTAAGGCCCTTATG 57.066 47.619 3.54 0.00 30.60 1.90
6294 10205 2.509964 ACTGAGGTTAAGGCCCTTATGG 59.490 50.000 3.54 0.00 30.60 2.74
6295 10206 2.777692 CTGAGGTTAAGGCCCTTATGGA 59.222 50.000 3.54 0.00 35.39 3.41
6296 10207 3.194620 TGAGGTTAAGGCCCTTATGGAA 58.805 45.455 3.54 0.00 35.39 3.53
6297 10208 3.202151 TGAGGTTAAGGCCCTTATGGAAG 59.798 47.826 3.54 0.00 35.39 3.46
6309 10220 3.891049 CTTATGGAAGGGAGGGAGTTTG 58.109 50.000 0.00 0.00 0.00 2.93
6310 10221 1.760405 ATGGAAGGGAGGGAGTTTGT 58.240 50.000 0.00 0.00 0.00 2.83
6311 10222 1.529744 TGGAAGGGAGGGAGTTTGTT 58.470 50.000 0.00 0.00 0.00 2.83
6312 10223 1.856920 TGGAAGGGAGGGAGTTTGTTT 59.143 47.619 0.00 0.00 0.00 2.83
6313 10224 2.158519 TGGAAGGGAGGGAGTTTGTTTC 60.159 50.000 0.00 0.00 0.00 2.78
6314 10225 2.158519 GGAAGGGAGGGAGTTTGTTTCA 60.159 50.000 0.00 0.00 0.00 2.69
6315 10226 3.500471 GGAAGGGAGGGAGTTTGTTTCAT 60.500 47.826 0.00 0.00 0.00 2.57
6316 10227 4.263771 GGAAGGGAGGGAGTTTGTTTCATA 60.264 45.833 0.00 0.00 0.00 2.15
6317 10228 5.510430 GAAGGGAGGGAGTTTGTTTCATAT 58.490 41.667 0.00 0.00 0.00 1.78
6318 10229 6.353602 GGAAGGGAGGGAGTTTGTTTCATATA 60.354 42.308 0.00 0.00 0.00 0.86
6319 10230 6.253946 AGGGAGGGAGTTTGTTTCATATAG 57.746 41.667 0.00 0.00 0.00 1.31
6320 10231 5.970640 AGGGAGGGAGTTTGTTTCATATAGA 59.029 40.000 0.00 0.00 0.00 1.98
6321 10232 6.447084 AGGGAGGGAGTTTGTTTCATATAGAA 59.553 38.462 0.00 0.00 0.00 2.10
6322 10233 7.036863 AGGGAGGGAGTTTGTTTCATATAGAAA 60.037 37.037 0.00 0.00 43.71 2.52
6344 10255 9.183368 AGAAATTTAGAAGAGAGCAAAATAGGG 57.817 33.333 0.00 0.00 0.00 3.53
6345 10256 8.885693 AAATTTAGAAGAGAGCAAAATAGGGT 57.114 30.769 0.00 0.00 0.00 4.34
6346 10257 9.975218 AAATTTAGAAGAGAGCAAAATAGGGTA 57.025 29.630 0.00 0.00 0.00 3.69
6347 10258 9.620259 AATTTAGAAGAGAGCAAAATAGGGTAG 57.380 33.333 0.00 0.00 0.00 3.18
6348 10259 5.029807 AGAAGAGAGCAAAATAGGGTAGC 57.970 43.478 0.00 0.00 0.00 3.58
6349 10260 4.471386 AGAAGAGAGCAAAATAGGGTAGCA 59.529 41.667 0.00 0.00 0.00 3.49
6350 10261 4.844349 AGAGAGCAAAATAGGGTAGCAA 57.156 40.909 0.00 0.00 0.00 3.91
6351 10262 5.179452 AGAGAGCAAAATAGGGTAGCAAA 57.821 39.130 0.00 0.00 0.00 3.68
6352 10263 5.760131 AGAGAGCAAAATAGGGTAGCAAAT 58.240 37.500 0.00 0.00 0.00 2.32
6353 10264 6.190587 AGAGAGCAAAATAGGGTAGCAAATT 58.809 36.000 0.00 0.00 0.00 1.82
6354 10265 6.096001 AGAGAGCAAAATAGGGTAGCAAATTG 59.904 38.462 0.00 0.00 0.00 2.32
6355 10266 5.951747 AGAGCAAAATAGGGTAGCAAATTGA 59.048 36.000 0.00 0.00 0.00 2.57
6356 10267 6.608808 AGAGCAAAATAGGGTAGCAAATTGAT 59.391 34.615 0.00 0.00 0.00 2.57
6357 10268 7.124750 AGAGCAAAATAGGGTAGCAAATTGATT 59.875 33.333 0.00 0.00 0.00 2.57
6358 10269 7.043565 AGCAAAATAGGGTAGCAAATTGATTG 58.956 34.615 0.00 0.00 42.21 2.67
6359 10270 6.258507 GCAAAATAGGGTAGCAAATTGATTGG 59.741 38.462 0.00 0.00 39.54 3.16
6360 10271 5.535753 AATAGGGTAGCAAATTGATTGGC 57.464 39.130 0.00 0.00 39.54 4.52
6361 10272 3.105959 AGGGTAGCAAATTGATTGGCT 57.894 42.857 10.27 10.27 39.54 4.75
6362 10273 2.762327 AGGGTAGCAAATTGATTGGCTG 59.238 45.455 14.42 0.00 39.54 4.85
6363 10274 2.497273 GGGTAGCAAATTGATTGGCTGT 59.503 45.455 14.42 0.00 39.54 4.40
6364 10275 3.055891 GGGTAGCAAATTGATTGGCTGTT 60.056 43.478 14.42 0.00 39.54 3.16
6365 10276 4.563374 GGGTAGCAAATTGATTGGCTGTTT 60.563 41.667 14.42 0.00 39.54 2.83
6366 10277 5.337169 GGGTAGCAAATTGATTGGCTGTTTA 60.337 40.000 14.42 0.00 39.54 2.01
6367 10278 5.576774 GGTAGCAAATTGATTGGCTGTTTAC 59.423 40.000 14.42 5.74 39.54 2.01
6368 10279 5.212532 AGCAAATTGATTGGCTGTTTACA 57.787 34.783 4.83 0.00 39.54 2.41
6369 10280 5.232463 AGCAAATTGATTGGCTGTTTACAG 58.768 37.500 4.83 5.52 41.84 2.74
6370 10281 4.990426 GCAAATTGATTGGCTGTTTACAGT 59.010 37.500 11.23 0.00 41.42 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.354751 AGCATTACTCTTTTCCTCCTACTAG 57.645 40.000 0.00 0.00 0.00 2.57
2 3 7.922699 ATAGCATTACTCTTTTCCTCCTACT 57.077 36.000 0.00 0.00 0.00 2.57
3 4 8.639761 TGTATAGCATTACTCTTTTCCTCCTAC 58.360 37.037 0.00 0.00 0.00 3.18
4 5 8.777578 TGTATAGCATTACTCTTTTCCTCCTA 57.222 34.615 0.00 0.00 0.00 2.94
5 6 7.676683 TGTATAGCATTACTCTTTTCCTCCT 57.323 36.000 0.00 0.00 0.00 3.69
6 7 9.425577 GTATGTATAGCATTACTCTTTTCCTCC 57.574 37.037 0.00 0.00 38.94 4.30
7 8 9.982651 TGTATGTATAGCATTACTCTTTTCCTC 57.017 33.333 0.00 0.00 38.94 3.71
37 38 9.581099 CCACCTGTTTGTAAAATCCATATAAAC 57.419 33.333 0.00 0.00 35.89 2.01
38 39 8.754080 CCCACCTGTTTGTAAAATCCATATAAA 58.246 33.333 0.00 0.00 0.00 1.40
39 40 7.896496 ACCCACCTGTTTGTAAAATCCATATAA 59.104 33.333 0.00 0.00 0.00 0.98
40 41 7.415086 ACCCACCTGTTTGTAAAATCCATATA 58.585 34.615 0.00 0.00 0.00 0.86
41 42 6.260663 ACCCACCTGTTTGTAAAATCCATAT 58.739 36.000 0.00 0.00 0.00 1.78
42 43 5.646215 ACCCACCTGTTTGTAAAATCCATA 58.354 37.500 0.00 0.00 0.00 2.74
43 44 4.488770 ACCCACCTGTTTGTAAAATCCAT 58.511 39.130 0.00 0.00 0.00 3.41
44 45 3.917300 ACCCACCTGTTTGTAAAATCCA 58.083 40.909 0.00 0.00 0.00 3.41
45 46 4.100344 ACAACCCACCTGTTTGTAAAATCC 59.900 41.667 0.00 0.00 0.00 3.01
46 47 5.047188 CACAACCCACCTGTTTGTAAAATC 58.953 41.667 0.00 0.00 0.00 2.17
47 48 4.712337 TCACAACCCACCTGTTTGTAAAAT 59.288 37.500 0.00 0.00 0.00 1.82
48 49 4.087182 TCACAACCCACCTGTTTGTAAAA 58.913 39.130 0.00 0.00 0.00 1.52
49 50 3.698289 TCACAACCCACCTGTTTGTAAA 58.302 40.909 0.00 0.00 0.00 2.01
50 51 3.367646 TCACAACCCACCTGTTTGTAA 57.632 42.857 0.00 0.00 0.00 2.41
51 52 3.586470 ATCACAACCCACCTGTTTGTA 57.414 42.857 0.00 0.00 0.00 2.41
52 53 2.430332 CAATCACAACCCACCTGTTTGT 59.570 45.455 0.00 0.00 0.00 2.83
53 54 2.224018 CCAATCACAACCCACCTGTTTG 60.224 50.000 0.00 0.00 0.00 2.93
54 55 2.038659 CCAATCACAACCCACCTGTTT 58.961 47.619 0.00 0.00 0.00 2.83
55 56 1.216678 TCCAATCACAACCCACCTGTT 59.783 47.619 0.00 0.00 0.00 3.16
56 57 0.850100 TCCAATCACAACCCACCTGT 59.150 50.000 0.00 0.00 0.00 4.00
57 58 1.538047 CTCCAATCACAACCCACCTG 58.462 55.000 0.00 0.00 0.00 4.00
58 59 0.405585 CCTCCAATCACAACCCACCT 59.594 55.000 0.00 0.00 0.00 4.00
59 60 0.112412 ACCTCCAATCACAACCCACC 59.888 55.000 0.00 0.00 0.00 4.61
60 61 1.995376 AACCTCCAATCACAACCCAC 58.005 50.000 0.00 0.00 0.00 4.61
61 62 3.499563 CCTTAACCTCCAATCACAACCCA 60.500 47.826 0.00 0.00 0.00 4.51
62 63 3.089284 CCTTAACCTCCAATCACAACCC 58.911 50.000 0.00 0.00 0.00 4.11
63 64 3.089284 CCCTTAACCTCCAATCACAACC 58.911 50.000 0.00 0.00 0.00 3.77
64 65 4.010349 CTCCCTTAACCTCCAATCACAAC 58.990 47.826 0.00 0.00 0.00 3.32
65 66 3.913799 TCTCCCTTAACCTCCAATCACAA 59.086 43.478 0.00 0.00 0.00 3.33
66 67 3.519510 CTCTCCCTTAACCTCCAATCACA 59.480 47.826 0.00 0.00 0.00 3.58
67 68 3.118223 CCTCTCCCTTAACCTCCAATCAC 60.118 52.174 0.00 0.00 0.00 3.06
68 69 3.115390 CCTCTCCCTTAACCTCCAATCA 58.885 50.000 0.00 0.00 0.00 2.57
69 70 3.385115 TCCTCTCCCTTAACCTCCAATC 58.615 50.000 0.00 0.00 0.00 2.67
70 71 3.388913 CTCCTCTCCCTTAACCTCCAAT 58.611 50.000 0.00 0.00 0.00 3.16
71 72 2.562214 CCTCCTCTCCCTTAACCTCCAA 60.562 54.545 0.00 0.00 0.00 3.53
72 73 1.008449 CCTCCTCTCCCTTAACCTCCA 59.992 57.143 0.00 0.00 0.00 3.86
73 74 1.693083 CCCTCCTCTCCCTTAACCTCC 60.693 61.905 0.00 0.00 0.00 4.30
74 75 1.693083 CCCCTCCTCTCCCTTAACCTC 60.693 61.905 0.00 0.00 0.00 3.85
75 76 0.343726 CCCCTCCTCTCCCTTAACCT 59.656 60.000 0.00 0.00 0.00 3.50
76 77 1.346479 GCCCCTCCTCTCCCTTAACC 61.346 65.000 0.00 0.00 0.00 2.85
77 78 1.346479 GGCCCCTCCTCTCCCTTAAC 61.346 65.000 0.00 0.00 0.00 2.01
78 79 1.004361 GGCCCCTCCTCTCCCTTAA 59.996 63.158 0.00 0.00 0.00 1.85
79 80 2.703430 GGCCCCTCCTCTCCCTTA 59.297 66.667 0.00 0.00 0.00 2.69
80 81 4.439901 GGGCCCCTCCTCTCCCTT 62.440 72.222 12.23 0.00 35.87 3.95
82 83 4.523282 ATGGGCCCCTCCTCTCCC 62.523 72.222 22.27 0.00 39.22 4.30
83 84 2.851588 GATGGGCCCCTCCTCTCC 60.852 72.222 22.27 0.00 34.39 3.71
84 85 2.851588 GGATGGGCCCCTCCTCTC 60.852 72.222 32.96 14.27 34.39 3.20
85 86 3.381049 AGGATGGGCCCCTCCTCT 61.381 66.667 36.23 20.44 37.30 3.69
90 91 0.925720 TTTCATGAGGATGGGCCCCT 60.926 55.000 22.27 10.21 37.37 4.79
91 92 0.032217 TTTTCATGAGGATGGGCCCC 60.032 55.000 22.27 3.89 37.37 5.80
92 93 1.966354 GATTTTCATGAGGATGGGCCC 59.034 52.381 17.59 17.59 37.37 5.80
93 94 2.626743 CTGATTTTCATGAGGATGGGCC 59.373 50.000 0.00 0.00 0.00 5.80
94 95 2.626743 CCTGATTTTCATGAGGATGGGC 59.373 50.000 0.00 0.00 35.84 5.36
95 96 3.117398 TCCCTGATTTTCATGAGGATGGG 60.117 47.826 11.80 11.80 35.84 4.00
96 97 4.174704 TCCCTGATTTTCATGAGGATGG 57.825 45.455 0.00 0.00 35.84 3.51
97 98 4.583489 CCTTCCCTGATTTTCATGAGGATG 59.417 45.833 0.00 0.08 35.84 3.51
98 99 4.479796 TCCTTCCCTGATTTTCATGAGGAT 59.520 41.667 0.00 0.00 35.84 3.24
99 100 3.851976 TCCTTCCCTGATTTTCATGAGGA 59.148 43.478 0.00 0.00 35.84 3.71
100 101 4.240881 TCCTTCCCTGATTTTCATGAGG 57.759 45.455 0.00 0.00 33.59 3.86
101 102 5.068723 CCATTCCTTCCCTGATTTTCATGAG 59.931 44.000 0.00 0.00 0.00 2.90
102 103 4.957954 CCATTCCTTCCCTGATTTTCATGA 59.042 41.667 0.00 0.00 0.00 3.07
103 104 4.713321 ACCATTCCTTCCCTGATTTTCATG 59.287 41.667 0.00 0.00 0.00 3.07
104 105 4.951603 ACCATTCCTTCCCTGATTTTCAT 58.048 39.130 0.00 0.00 0.00 2.57
105 106 4.402616 ACCATTCCTTCCCTGATTTTCA 57.597 40.909 0.00 0.00 0.00 2.69
106 107 5.952347 ACTAACCATTCCTTCCCTGATTTTC 59.048 40.000 0.00 0.00 0.00 2.29
107 108 5.903923 ACTAACCATTCCTTCCCTGATTTT 58.096 37.500 0.00 0.00 0.00 1.82
108 109 5.536497 ACTAACCATTCCTTCCCTGATTT 57.464 39.130 0.00 0.00 0.00 2.17
109 110 5.536497 AACTAACCATTCCTTCCCTGATT 57.464 39.130 0.00 0.00 0.00 2.57
110 111 5.970640 TCTAACTAACCATTCCTTCCCTGAT 59.029 40.000 0.00 0.00 0.00 2.90
111 112 5.347124 TCTAACTAACCATTCCTTCCCTGA 58.653 41.667 0.00 0.00 0.00 3.86
112 113 5.693769 TCTAACTAACCATTCCTTCCCTG 57.306 43.478 0.00 0.00 0.00 4.45
113 114 6.504279 TCTTTCTAACTAACCATTCCTTCCCT 59.496 38.462 0.00 0.00 0.00 4.20
114 115 6.718294 TCTTTCTAACTAACCATTCCTTCCC 58.282 40.000 0.00 0.00 0.00 3.97
115 116 8.631480 TTTCTTTCTAACTAACCATTCCTTCC 57.369 34.615 0.00 0.00 0.00 3.46
139 140 5.183140 ACGCACTTACATGCTTAGGATTTTT 59.817 36.000 0.00 0.00 43.80 1.94
140 141 4.700213 ACGCACTTACATGCTTAGGATTTT 59.300 37.500 0.00 0.00 43.80 1.82
141 142 4.094887 CACGCACTTACATGCTTAGGATTT 59.905 41.667 0.00 0.00 43.80 2.17
142 143 3.623060 CACGCACTTACATGCTTAGGATT 59.377 43.478 0.00 0.00 43.80 3.01
143 144 3.198068 CACGCACTTACATGCTTAGGAT 58.802 45.455 0.00 0.00 43.80 3.24
144 145 2.028476 ACACGCACTTACATGCTTAGGA 60.028 45.455 0.00 0.00 43.80 2.94
145 146 2.346803 ACACGCACTTACATGCTTAGG 58.653 47.619 0.00 0.00 43.80 2.69
146 147 5.524511 TTTACACGCACTTACATGCTTAG 57.475 39.130 0.00 0.00 43.80 2.18
147 148 5.872617 AGATTTACACGCACTTACATGCTTA 59.127 36.000 0.00 0.00 43.80 3.09
148 149 4.695455 AGATTTACACGCACTTACATGCTT 59.305 37.500 0.00 0.00 43.80 3.91
149 150 4.253685 AGATTTACACGCACTTACATGCT 58.746 39.130 0.00 0.00 43.80 3.79
150 151 4.600012 AGATTTACACGCACTTACATGC 57.400 40.909 0.00 0.00 42.48 4.06
151 152 6.370593 ACAAAGATTTACACGCACTTACATG 58.629 36.000 0.00 0.00 0.00 3.21
152 153 6.554334 ACAAAGATTTACACGCACTTACAT 57.446 33.333 0.00 0.00 0.00 2.29
153 154 5.994887 ACAAAGATTTACACGCACTTACA 57.005 34.783 0.00 0.00 0.00 2.41
154 155 7.515643 ACATACAAAGATTTACACGCACTTAC 58.484 34.615 0.00 0.00 0.00 2.34
155 156 7.661127 ACATACAAAGATTTACACGCACTTA 57.339 32.000 0.00 0.00 0.00 2.24
156 157 6.554334 ACATACAAAGATTTACACGCACTT 57.446 33.333 0.00 0.00 0.00 3.16
157 158 6.554334 AACATACAAAGATTTACACGCACT 57.446 33.333 0.00 0.00 0.00 4.40
158 159 7.007099 GCTAAACATACAAAGATTTACACGCAC 59.993 37.037 0.00 0.00 0.00 5.34
159 160 7.018826 GCTAAACATACAAAGATTTACACGCA 58.981 34.615 0.00 0.00 0.00 5.24
160 161 7.018826 TGCTAAACATACAAAGATTTACACGC 58.981 34.615 0.00 0.00 0.00 5.34
161 162 9.554724 AATGCTAAACATACAAAGATTTACACG 57.445 29.630 0.00 0.00 38.34 4.49
166 167 9.206870 CCAACAATGCTAAACATACAAAGATTT 57.793 29.630 0.00 0.00 38.34 2.17
167 168 7.818930 CCCAACAATGCTAAACATACAAAGATT 59.181 33.333 0.00 0.00 38.34 2.40
168 169 7.178274 TCCCAACAATGCTAAACATACAAAGAT 59.822 33.333 0.00 0.00 38.34 2.40
169 170 6.491745 TCCCAACAATGCTAAACATACAAAGA 59.508 34.615 0.00 0.00 38.34 2.52
170 171 6.686630 TCCCAACAATGCTAAACATACAAAG 58.313 36.000 0.00 0.00 38.34 2.77
171 172 6.295011 CCTCCCAACAATGCTAAACATACAAA 60.295 38.462 0.00 0.00 38.34 2.83
172 173 5.184864 CCTCCCAACAATGCTAAACATACAA 59.815 40.000 0.00 0.00 38.34 2.41
173 174 4.704540 CCTCCCAACAATGCTAAACATACA 59.295 41.667 0.00 0.00 38.34 2.29
174 175 4.947388 TCCTCCCAACAATGCTAAACATAC 59.053 41.667 0.00 0.00 38.34 2.39
175 176 5.186256 TCCTCCCAACAATGCTAAACATA 57.814 39.130 0.00 0.00 38.34 2.29
176 177 4.046286 TCCTCCCAACAATGCTAAACAT 57.954 40.909 0.00 0.00 42.30 2.71
177 178 3.517296 TCCTCCCAACAATGCTAAACA 57.483 42.857 0.00 0.00 0.00 2.83
178 179 4.864704 TTTCCTCCCAACAATGCTAAAC 57.135 40.909 0.00 0.00 0.00 2.01
179 180 5.600484 TCTTTTTCCTCCCAACAATGCTAAA 59.400 36.000 0.00 0.00 0.00 1.85
180 181 5.144100 TCTTTTTCCTCCCAACAATGCTAA 58.856 37.500 0.00 0.00 0.00 3.09
181 182 4.735369 TCTTTTTCCTCCCAACAATGCTA 58.265 39.130 0.00 0.00 0.00 3.49
182 183 3.575687 CTCTTTTTCCTCCCAACAATGCT 59.424 43.478 0.00 0.00 0.00 3.79
183 184 3.306294 CCTCTTTTTCCTCCCAACAATGC 60.306 47.826 0.00 0.00 0.00 3.56
184 185 3.259123 CCCTCTTTTTCCTCCCAACAATG 59.741 47.826 0.00 0.00 0.00 2.82
185 186 3.142028 TCCCTCTTTTTCCTCCCAACAAT 59.858 43.478 0.00 0.00 0.00 2.71
186 187 2.516277 TCCCTCTTTTTCCTCCCAACAA 59.484 45.455 0.00 0.00 0.00 2.83
187 188 2.108250 CTCCCTCTTTTTCCTCCCAACA 59.892 50.000 0.00 0.00 0.00 3.33
188 189 2.796557 CTCCCTCTTTTTCCTCCCAAC 58.203 52.381 0.00 0.00 0.00 3.77
189 190 1.075536 GCTCCCTCTTTTTCCTCCCAA 59.924 52.381 0.00 0.00 0.00 4.12
190 191 0.698818 GCTCCCTCTTTTTCCTCCCA 59.301 55.000 0.00 0.00 0.00 4.37
191 192 0.698818 TGCTCCCTCTTTTTCCTCCC 59.301 55.000 0.00 0.00 0.00 4.30
192 193 2.558795 GTTTGCTCCCTCTTTTTCCTCC 59.441 50.000 0.00 0.00 0.00 4.30
193 194 2.558795 GGTTTGCTCCCTCTTTTTCCTC 59.441 50.000 0.00 0.00 0.00 3.71
194 195 2.091333 TGGTTTGCTCCCTCTTTTTCCT 60.091 45.455 0.00 0.00 0.00 3.36
195 196 2.035961 GTGGTTTGCTCCCTCTTTTTCC 59.964 50.000 0.00 0.00 0.00 3.13
196 197 2.287608 CGTGGTTTGCTCCCTCTTTTTC 60.288 50.000 0.00 0.00 0.00 2.29
197 198 1.681264 CGTGGTTTGCTCCCTCTTTTT 59.319 47.619 0.00 0.00 0.00 1.94
198 199 1.318576 CGTGGTTTGCTCCCTCTTTT 58.681 50.000 0.00 0.00 0.00 2.27
199 200 0.537371 CCGTGGTTTGCTCCCTCTTT 60.537 55.000 0.00 0.00 0.00 2.52
200 201 1.073199 CCGTGGTTTGCTCCCTCTT 59.927 57.895 0.00 0.00 0.00 2.85
201 202 1.831652 CTCCGTGGTTTGCTCCCTCT 61.832 60.000 0.00 0.00 0.00 3.69
202 203 1.376037 CTCCGTGGTTTGCTCCCTC 60.376 63.158 0.00 0.00 0.00 4.30
203 204 2.750350 CTCCGTGGTTTGCTCCCT 59.250 61.111 0.00 0.00 0.00 4.20
204 205 3.056328 GCTCCGTGGTTTGCTCCC 61.056 66.667 0.00 0.00 0.00 4.30
205 206 2.032681 AGCTCCGTGGTTTGCTCC 59.967 61.111 0.00 0.00 0.00 4.70
206 207 2.970974 GCAGCTCCGTGGTTTGCTC 61.971 63.158 0.00 0.00 33.03 4.26
207 208 2.980233 GCAGCTCCGTGGTTTGCT 60.980 61.111 0.00 0.00 36.04 3.91
208 209 3.286751 TGCAGCTCCGTGGTTTGC 61.287 61.111 0.00 5.51 35.42 3.68
209 210 2.639286 GTGCAGCTCCGTGGTTTG 59.361 61.111 0.00 0.00 0.00 2.93
210 211 2.972505 CGTGCAGCTCCGTGGTTT 60.973 61.111 0.00 0.00 0.00 3.27
211 212 4.988598 CCGTGCAGCTCCGTGGTT 62.989 66.667 0.00 0.00 0.00 3.67
245 246 3.766591 AGTCTCTACAGCTGCATGTTACT 59.233 43.478 15.27 7.97 34.56 2.24
246 247 4.116747 AGTCTCTACAGCTGCATGTTAC 57.883 45.455 15.27 5.62 34.56 2.50
260 261 2.043115 TGGCTTGAGGGAGAAGTCTCTA 59.957 50.000 8.19 0.00 42.48 2.43
327 330 3.075005 GGCCTACCCTGTCAGCGA 61.075 66.667 0.00 0.00 0.00 4.93
337 340 1.299976 CCTGAGTTGTGGGCCTACC 59.700 63.158 17.66 1.68 40.81 3.18
429 441 3.679824 ACTAAGGAGACAGGTTTTCGG 57.320 47.619 0.00 0.00 0.00 4.30
431 443 5.172205 CAGCTACTAAGGAGACAGGTTTTC 58.828 45.833 0.00 0.00 0.00 2.29
432 444 4.020128 CCAGCTACTAAGGAGACAGGTTTT 60.020 45.833 0.00 0.00 0.00 2.43
433 445 3.515901 CCAGCTACTAAGGAGACAGGTTT 59.484 47.826 0.00 0.00 0.00 3.27
435 447 2.741145 CCAGCTACTAAGGAGACAGGT 58.259 52.381 0.00 0.00 0.00 4.00
436 448 1.410882 GCCAGCTACTAAGGAGACAGG 59.589 57.143 0.00 0.00 0.00 4.00
437 449 2.100584 CAGCCAGCTACTAAGGAGACAG 59.899 54.545 0.00 0.00 0.00 3.51
438 450 2.103373 CAGCCAGCTACTAAGGAGACA 58.897 52.381 0.00 0.00 0.00 3.41
440 452 2.291605 TGTCAGCCAGCTACTAAGGAGA 60.292 50.000 0.00 0.00 0.00 3.71
441 453 2.103373 TGTCAGCCAGCTACTAAGGAG 58.897 52.381 0.00 0.00 0.00 3.69
442 454 2.231716 TGTCAGCCAGCTACTAAGGA 57.768 50.000 0.00 0.00 0.00 3.36
443 455 2.831333 CATGTCAGCCAGCTACTAAGG 58.169 52.381 0.00 0.00 0.00 2.69
444 456 2.208431 GCATGTCAGCCAGCTACTAAG 58.792 52.381 0.00 0.00 0.00 2.18
446 458 0.103026 CGCATGTCAGCCAGCTACTA 59.897 55.000 0.00 0.00 0.00 1.82
447 459 1.153489 CGCATGTCAGCCAGCTACT 60.153 57.895 0.00 0.00 0.00 2.57
448 460 2.176273 CCGCATGTCAGCCAGCTAC 61.176 63.158 0.00 0.00 0.00 3.58
449 461 2.187685 CCGCATGTCAGCCAGCTA 59.812 61.111 0.00 0.00 0.00 3.32
450 462 4.790962 CCCGCATGTCAGCCAGCT 62.791 66.667 0.00 0.00 0.00 4.24
504 526 4.873129 CGGTCATGTCGAGCCCGG 62.873 72.222 0.00 0.00 39.03 5.73
520 542 4.049393 GAGAATCGCATTCCCCCG 57.951 61.111 5.57 0.00 40.13 5.73
626 3249 2.172851 TAAAAGCGCGAAGGAAAGGA 57.827 45.000 12.10 0.00 0.00 3.36
634 3257 1.735571 GGAGTGGAATAAAAGCGCGAA 59.264 47.619 12.10 0.00 0.00 4.70
923 3563 0.243907 ACGTACTACTGCAGCACCAG 59.756 55.000 15.27 8.60 38.78 4.00
924 3564 1.200716 GTACGTACTACTGCAGCACCA 59.799 52.381 18.47 0.00 0.00 4.17
925 3565 1.468736 GGTACGTACTACTGCAGCACC 60.469 57.143 24.07 2.75 0.00 5.01
938 3581 4.559300 GCTTCCTTGTTACAGTGGTACGTA 60.559 45.833 0.00 0.00 0.00 3.57
940 3583 2.735134 GCTTCCTTGTTACAGTGGTACG 59.265 50.000 0.00 0.00 0.00 3.67
941 3584 3.735591 TGCTTCCTTGTTACAGTGGTAC 58.264 45.455 0.00 0.00 0.00 3.34
942 3585 4.425180 TTGCTTCCTTGTTACAGTGGTA 57.575 40.909 0.00 0.00 0.00 3.25
943 3586 3.290948 TTGCTTCCTTGTTACAGTGGT 57.709 42.857 0.00 0.00 0.00 4.16
944 3587 3.550842 GCTTTGCTTCCTTGTTACAGTGG 60.551 47.826 0.00 1.08 0.00 4.00
945 3588 3.632189 GCTTTGCTTCCTTGTTACAGTG 58.368 45.455 0.00 0.00 0.00 3.66
946 3589 2.290641 CGCTTTGCTTCCTTGTTACAGT 59.709 45.455 0.00 0.00 0.00 3.55
947 3590 2.350772 CCGCTTTGCTTCCTTGTTACAG 60.351 50.000 0.00 0.00 0.00 2.74
948 3591 1.606668 CCGCTTTGCTTCCTTGTTACA 59.393 47.619 0.00 0.00 0.00 2.41
952 3595 1.152756 ACCCGCTTTGCTTCCTTGT 60.153 52.632 0.00 0.00 0.00 3.16
991 3644 1.134530 GACGACGACATCAGAAGCCG 61.135 60.000 0.00 0.00 0.00 5.52
1044 3697 2.046700 GGTGCCGTTCGATTCCCA 60.047 61.111 0.00 0.00 0.00 4.37
1080 3733 2.968206 GTCGAGTTGGTAGCGGGT 59.032 61.111 0.00 0.00 0.00 5.28
1543 4199 1.209019 GAGTCATGGAGGATGCACAGT 59.791 52.381 0.00 0.00 41.42 3.55
1592 4248 3.156511 ACGCACATGAGATCTGTAGTG 57.843 47.619 0.00 6.80 0.00 2.74
1593 4249 3.876274 AACGCACATGAGATCTGTAGT 57.124 42.857 0.00 0.00 0.00 2.73
1594 4250 6.256539 ACAAATAACGCACATGAGATCTGTAG 59.743 38.462 0.00 0.00 0.00 2.74
1614 4270 4.960938 TGTGACTTGCTAGTGAGACAAAT 58.039 39.130 5.27 0.00 33.84 2.32
1711 4367 4.570772 TCTTGAAGTCACCAAAAACTCGAG 59.429 41.667 11.84 11.84 0.00 4.04
1714 4370 5.450550 CCCTTCTTGAAGTCACCAAAAACTC 60.451 44.000 9.21 0.00 0.00 3.01
1726 4383 4.797912 AAAAGAGGACCCTTCTTGAAGT 57.202 40.909 9.21 0.00 0.00 3.01
1735 4392 4.870021 AGCATGATTAAAAGAGGACCCT 57.130 40.909 0.00 0.00 0.00 4.34
1850 4632 4.499865 CCTGTGATCACTACTACCCGATTG 60.500 50.000 25.55 0.00 0.00 2.67
1852 4634 3.117625 TCCTGTGATCACTACTACCCGAT 60.118 47.826 25.55 0.00 0.00 4.18
1854 4636 2.651455 TCCTGTGATCACTACTACCCG 58.349 52.381 25.55 5.33 0.00 5.28
1855 4637 4.896482 AGATTCCTGTGATCACTACTACCC 59.104 45.833 25.55 10.14 0.00 3.69
1856 4638 6.096987 TGAAGATTCCTGTGATCACTACTACC 59.903 42.308 25.55 11.48 0.00 3.18
1857 4639 7.101652 TGAAGATTCCTGTGATCACTACTAC 57.898 40.000 25.55 12.79 0.00 2.73
1859 4641 6.610830 AGATGAAGATTCCTGTGATCACTACT 59.389 38.462 25.55 12.57 0.00 2.57
1920 5011 8.861086 TGCAGACCTGGTGTTTATTTTATTTTA 58.139 29.630 2.82 0.00 0.00 1.52
1921 5012 7.731054 TGCAGACCTGGTGTTTATTTTATTTT 58.269 30.769 2.82 0.00 0.00 1.82
1953 5046 3.028850 AGATTCCATGCAGAACAATGGG 58.971 45.455 2.04 0.00 35.03 4.00
1954 5047 3.697542 TCAGATTCCATGCAGAACAATGG 59.302 43.478 0.00 0.00 35.58 3.16
1959 5052 8.158169 TGTATAAATCAGATTCCATGCAGAAC 57.842 34.615 0.00 0.00 0.00 3.01
1964 5057 6.016024 TGCCTTGTATAAATCAGATTCCATGC 60.016 38.462 0.00 0.00 0.00 4.06
1998 5091 0.994050 AAGGAGGGCATACTTCCCCC 60.994 60.000 0.00 0.00 45.03 5.40
2002 5095 3.261981 TCGAAAAGGAGGGCATACTTC 57.738 47.619 0.00 0.00 0.00 3.01
2010 5103 2.808543 CAACTCACTTCGAAAAGGAGGG 59.191 50.000 18.78 10.47 35.66 4.30
2031 5124 6.509418 TTTCATTGCTGACAATAGGTTACC 57.491 37.500 0.00 0.00 44.83 2.85
2037 5130 8.752766 AAACTCATTTTCATTGCTGACAATAG 57.247 30.769 0.00 0.00 44.83 1.73
2040 5133 7.715657 AGTAAACTCATTTTCATTGCTGACAA 58.284 30.769 0.00 0.00 40.87 3.18
2042 5135 7.862372 TGAAGTAAACTCATTTTCATTGCTGAC 59.138 33.333 0.00 0.00 0.00 3.51
2058 5151 8.068380 GCACGAAGTTTAAGAATGAAGTAAACT 58.932 33.333 0.00 2.92 41.61 2.66
2093 5186 7.659390 CCCCTGTTGCAAAATCTAATAAACAAA 59.341 33.333 0.00 0.00 0.00 2.83
2235 5328 6.778108 TGAATTCATCTTCACAACATGATCG 58.222 36.000 3.38 0.00 37.11 3.69
2415 5508 1.401905 GAGAATTCATTGGTCGCCACC 59.598 52.381 8.44 0.00 44.10 4.61
2511 5604 6.149973 CACTTCCATCTCTTAATTGCTTCACA 59.850 38.462 0.00 0.00 0.00 3.58
2514 5607 5.067023 CCCACTTCCATCTCTTAATTGCTTC 59.933 44.000 0.00 0.00 0.00 3.86
2523 5616 0.622665 CCTGCCCACTTCCATCTCTT 59.377 55.000 0.00 0.00 0.00 2.85
2607 5700 6.357579 TCAGAAATGCAATAACCAACCAAT 57.642 33.333 0.00 0.00 0.00 3.16
2754 5847 5.403466 GTCGTAGTTCACTTTTACGGACAAT 59.597 40.000 3.82 0.00 40.25 2.71
2762 5855 7.431249 ACAGAAGATGTCGTAGTTCACTTTTA 58.569 34.615 0.00 0.00 37.75 1.52
2763 5856 6.281405 ACAGAAGATGTCGTAGTTCACTTTT 58.719 36.000 0.00 0.00 37.75 2.27
2827 5920 8.677300 CAACTCATAAGTACAAACTGGCAATAT 58.323 33.333 0.00 0.00 35.62 1.28
2840 5933 5.589192 ACTCATACGGCAACTCATAAGTAC 58.411 41.667 0.00 0.00 33.48 2.73
2842 5935 4.737855 ACTCATACGGCAACTCATAAGT 57.262 40.909 0.00 0.00 37.32 2.24
2843 5936 4.271049 CCAACTCATACGGCAACTCATAAG 59.729 45.833 0.00 0.00 0.00 1.73
2848 5941 2.271800 CTCCAACTCATACGGCAACTC 58.728 52.381 0.00 0.00 0.00 3.01
2849 5942 1.623811 ACTCCAACTCATACGGCAACT 59.376 47.619 0.00 0.00 0.00 3.16
2850 5943 2.094762 ACTCCAACTCATACGGCAAC 57.905 50.000 0.00 0.00 0.00 4.17
2851 5944 2.422597 CAACTCCAACTCATACGGCAA 58.577 47.619 0.00 0.00 0.00 4.52
2852 5945 1.943968 GCAACTCCAACTCATACGGCA 60.944 52.381 0.00 0.00 0.00 5.69
2853 5946 0.727398 GCAACTCCAACTCATACGGC 59.273 55.000 0.00 0.00 0.00 5.68
2854 5947 1.369625 GGCAACTCCAACTCATACGG 58.630 55.000 0.00 0.00 34.01 4.02
2855 5948 0.999406 CGGCAACTCCAACTCATACG 59.001 55.000 0.00 0.00 34.01 3.06
2856 5949 2.094762 ACGGCAACTCCAACTCATAC 57.905 50.000 0.00 0.00 34.01 2.39
2857 5950 3.449377 TCATACGGCAACTCCAACTCATA 59.551 43.478 0.00 0.00 34.01 2.15
2858 5951 2.236146 TCATACGGCAACTCCAACTCAT 59.764 45.455 0.00 0.00 34.01 2.90
2859 5952 1.621317 TCATACGGCAACTCCAACTCA 59.379 47.619 0.00 0.00 34.01 3.41
2860 5953 2.271800 CTCATACGGCAACTCCAACTC 58.728 52.381 0.00 0.00 34.01 3.01
2861 5954 1.623811 ACTCATACGGCAACTCCAACT 59.376 47.619 0.00 0.00 34.01 3.16
2862 5955 2.094762 ACTCATACGGCAACTCCAAC 57.905 50.000 0.00 0.00 34.01 3.77
2863 5956 2.037902 TCAACTCATACGGCAACTCCAA 59.962 45.455 0.00 0.00 34.01 3.53
2864 5957 1.621317 TCAACTCATACGGCAACTCCA 59.379 47.619 0.00 0.00 34.01 3.86
2865 5958 2.000447 GTCAACTCATACGGCAACTCC 59.000 52.381 0.00 0.00 0.00 3.85
2866 5959 1.654105 CGTCAACTCATACGGCAACTC 59.346 52.381 0.00 0.00 35.51 3.01
2884 5977 1.839354 ACCCGGATATTTACCAACCGT 59.161 47.619 0.73 0.00 41.67 4.83
2890 5983 7.283807 ACTTTGTAAATCACCCGGATATTTACC 59.716 37.037 26.29 16.90 41.86 2.85
3016 6110 8.347004 TCTTGCAGTCATGGTATTTCATTTTA 57.653 30.769 0.00 0.00 0.00 1.52
3057 6151 6.426646 TGGGTTTGGTTGTGCTTATTATTT 57.573 33.333 0.00 0.00 0.00 1.40
3167 6261 0.945813 TTCGGGTGGTAGCAAAAACG 59.054 50.000 0.00 0.00 0.00 3.60
3190 6284 5.777732 ACCAATAAACCTGGAAAGCATTGTA 59.222 36.000 0.00 0.00 37.40 2.41
3222 6316 7.144000 AGCAATGTTTTCTGAATCTTCAAGAC 58.856 34.615 0.00 0.00 36.64 3.01
3304 6398 3.763897 ACCTGAAGACATTACCAAATGCC 59.236 43.478 0.00 0.00 45.41 4.40
3312 6406 8.336801 AGGTGAAAATAACCTGAAGACATTAC 57.663 34.615 0.00 0.00 46.51 1.89
3809 6905 7.867305 TTAACTATGTTTATGATCCCGCAAA 57.133 32.000 0.00 0.00 0.00 3.68
3841 6937 7.042523 ACACGTCCAACAGTTTTGTATTAGTAC 60.043 37.037 0.00 0.00 36.23 2.73
3941 7037 4.567537 CCCATTACTCTGGTGGAAACATGA 60.568 45.833 0.00 0.00 46.14 3.07
4002 7098 1.613437 CACTGTCCCGGAAAGCAAAAT 59.387 47.619 0.73 0.00 0.00 1.82
4141 7242 3.087031 GCAAGGTACCTAAGGGGAAAAC 58.913 50.000 16.67 0.00 38.76 2.43
4339 7441 6.484364 AACAACAAGAATGAATTTGACCCT 57.516 33.333 0.00 0.00 0.00 4.34
4372 7474 9.547279 AAAATACTCTTCCAAAAAGACCCATAT 57.453 29.630 0.00 0.00 0.00 1.78
4438 7554 6.347859 TGGTGTTTCTTGGTAAAGTTTTGT 57.652 33.333 0.00 0.00 34.78 2.83
4452 7569 3.636764 GTGTTTGGAAGGATGGTGTTTCT 59.363 43.478 0.00 0.00 0.00 2.52
4457 7574 1.256812 GGGTGTTTGGAAGGATGGTG 58.743 55.000 0.00 0.00 0.00 4.17
4463 7580 1.272480 CCTTAGGGGGTGTTTGGAAGG 60.272 57.143 0.00 0.00 0.00 3.46
4538 7706 8.758829 TGAGGAATAGCAAGTAACTTATGAAGA 58.241 33.333 0.00 0.00 0.00 2.87
4564 7732 7.162082 ACAGAGAAAATCGAGTCCAATTTAGT 58.838 34.615 0.00 0.00 0.00 2.24
4570 7738 5.869344 CACATACAGAGAAAATCGAGTCCAA 59.131 40.000 0.00 0.00 0.00 3.53
4593 7761 3.233231 GCAAAGGCCAAGGCACCA 61.233 61.111 13.87 0.00 44.11 4.17
4622 7790 6.309494 TCCGACAAGAATAAATACAACGAGTG 59.691 38.462 0.00 0.00 0.00 3.51
4645 7813 5.070685 AGTTGGAAGATGGTAAAACACTCC 58.929 41.667 0.00 0.00 0.00 3.85
4651 7819 6.945938 TCGAAAAGTTGGAAGATGGTAAAA 57.054 33.333 0.00 0.00 0.00 1.52
4731 7899 8.915057 ATCCAACTCAAATAGATGTATCCAAG 57.085 34.615 0.00 0.00 0.00 3.61
4734 7902 7.684529 AGGATCCAACTCAAATAGATGTATCC 58.315 38.462 15.82 0.00 41.27 2.59
4735 7903 8.592809 AGAGGATCCAACTCAAATAGATGTATC 58.407 37.037 15.82 0.00 37.43 2.24
4737 7905 7.921041 AGAGGATCCAACTCAAATAGATGTA 57.079 36.000 15.82 0.00 37.43 2.29
4738 7906 6.821616 AGAGGATCCAACTCAAATAGATGT 57.178 37.500 15.82 0.00 37.43 3.06
4948 8120 3.309296 GAGATGAGGATACAAGGGGTGA 58.691 50.000 0.00 0.00 41.41 4.02
4949 8121 2.036475 CGAGATGAGGATACAAGGGGTG 59.964 54.545 0.00 0.00 41.41 4.61
5011 8199 7.519032 AGCTCAACTCTATCTAGGATACAAC 57.481 40.000 0.00 0.00 41.41 3.32
5031 8219 2.034053 CACAGAGGATCGAGGTTAGCTC 59.966 54.545 0.72 0.72 42.67 4.09
5144 8332 2.052690 ATACTCGGAGCTGGCGTGT 61.053 57.895 4.58 0.00 0.00 4.49
5216 8404 4.613929 CTCTGGAAGCTGCTGGTC 57.386 61.111 1.35 0.00 0.00 4.02
5336 8530 0.179220 CGTCACCGTCGTCTCTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
5351 8548 3.749064 GCCTGGCTCTCGACGTCA 61.749 66.667 17.16 1.87 0.00 4.35
5394 8595 2.094700 TGAAGTCAAATCTCTCCGACGG 60.095 50.000 7.84 7.84 33.56 4.79
5398 8599 4.560128 TGTTCTGAAGTCAAATCTCTCCG 58.440 43.478 0.00 0.00 0.00 4.63
5406 8607 8.690884 TGGATTTACAAATGTTCTGAAGTCAAA 58.309 29.630 0.00 0.00 0.00 2.69
5409 8610 7.648142 TGTGGATTTACAAATGTTCTGAAGTC 58.352 34.615 0.00 0.00 0.00 3.01
5412 8613 6.040278 TGCTGTGGATTTACAAATGTTCTGAA 59.960 34.615 0.00 0.00 0.00 3.02
5417 8618 6.153340 AGCTATGCTGTGGATTTACAAATGTT 59.847 34.615 0.00 0.00 37.57 2.71
5464 8668 1.400142 CGTTGCAACCAAGTCAAGTCA 59.600 47.619 23.42 0.00 0.00 3.41
5465 8669 1.668751 TCGTTGCAACCAAGTCAAGTC 59.331 47.619 23.42 0.00 0.00 3.01
5466 8670 1.745232 TCGTTGCAACCAAGTCAAGT 58.255 45.000 23.42 0.00 0.00 3.16
5467 8671 2.159448 TGTTCGTTGCAACCAAGTCAAG 60.159 45.455 23.42 7.22 0.00 3.02
5468 8672 1.813178 TGTTCGTTGCAACCAAGTCAA 59.187 42.857 23.42 4.59 0.00 3.18
5527 8740 2.928116 AGAAGAACGTAAATGCGGCTAC 59.072 45.455 0.00 0.00 35.98 3.58
5531 8744 4.084013 ACAGAAAGAAGAACGTAAATGCGG 60.084 41.667 0.00 0.00 35.98 5.69
5543 8756 4.827284 GGGAATTGGTGAACAGAAAGAAGA 59.173 41.667 0.00 0.00 0.00 2.87
5548 8761 4.144297 CAGAGGGAATTGGTGAACAGAAA 58.856 43.478 0.00 0.00 0.00 2.52
5549 8762 3.754965 CAGAGGGAATTGGTGAACAGAA 58.245 45.455 0.00 0.00 0.00 3.02
5550 8763 2.553028 GCAGAGGGAATTGGTGAACAGA 60.553 50.000 0.00 0.00 0.00 3.41
5551 8764 1.815003 GCAGAGGGAATTGGTGAACAG 59.185 52.381 0.00 0.00 0.00 3.16
5552 8765 1.144708 TGCAGAGGGAATTGGTGAACA 59.855 47.619 0.00 0.00 0.00 3.18
5553 8766 1.909700 TGCAGAGGGAATTGGTGAAC 58.090 50.000 0.00 0.00 0.00 3.18
5554 8767 2.905415 ATGCAGAGGGAATTGGTGAA 57.095 45.000 0.00 0.00 0.00 3.18
5555 8768 2.905415 AATGCAGAGGGAATTGGTGA 57.095 45.000 0.00 0.00 0.00 4.02
5556 8769 3.094572 AGAAATGCAGAGGGAATTGGTG 58.905 45.455 0.00 0.00 0.00 4.17
5557 8770 3.463048 AGAAATGCAGAGGGAATTGGT 57.537 42.857 0.00 0.00 0.00 3.67
5558 8771 3.633986 GGTAGAAATGCAGAGGGAATTGG 59.366 47.826 0.00 0.00 0.00 3.16
5559 8772 4.530875 AGGTAGAAATGCAGAGGGAATTG 58.469 43.478 0.00 0.00 0.00 2.32
5560 8773 4.385754 GGAGGTAGAAATGCAGAGGGAATT 60.386 45.833 0.00 0.00 0.00 2.17
5561 8774 3.137360 GGAGGTAGAAATGCAGAGGGAAT 59.863 47.826 0.00 0.00 0.00 3.01
5562 8775 2.505819 GGAGGTAGAAATGCAGAGGGAA 59.494 50.000 0.00 0.00 0.00 3.97
5563 8776 2.119495 GGAGGTAGAAATGCAGAGGGA 58.881 52.381 0.00 0.00 0.00 4.20
5564 8777 1.202580 CGGAGGTAGAAATGCAGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
5565 8778 1.482593 ACGGAGGTAGAAATGCAGAGG 59.517 52.381 0.00 0.00 0.00 3.69
5573 8786 2.549349 GCAGTGGAAACGGAGGTAGAAA 60.549 50.000 0.00 0.00 0.00 2.52
5580 8793 3.308530 GAAAAATGCAGTGGAAACGGAG 58.691 45.455 0.00 0.00 0.00 4.63
5597 8810 6.287525 TGTATGATCATGCATCTACGGAAAA 58.712 36.000 20.94 0.00 31.92 2.29
5648 8863 5.241506 CAGTTACCTTTCTTCCAAGCATGAA 59.758 40.000 0.00 0.00 0.00 2.57
5666 8881 3.119245 TCTGTATCTCGTTGGCCAGTTAC 60.119 47.826 5.11 0.00 0.00 2.50
5675 8890 3.526931 ACCCATGTCTGTATCTCGTTG 57.473 47.619 0.00 0.00 0.00 4.10
5684 8899 1.001633 GTCCAACGTACCCATGTCTGT 59.998 52.381 0.00 0.00 0.00 3.41
5688 8938 0.323629 CTGGTCCAACGTACCCATGT 59.676 55.000 3.57 0.00 36.06 3.21
5694 8944 0.968405 TACACCCTGGTCCAACGTAC 59.032 55.000 0.00 0.00 0.00 3.67
5696 8946 0.323629 CATACACCCTGGTCCAACGT 59.676 55.000 0.00 0.00 0.00 3.99
5709 8959 4.702131 ACAAATGAGAAGGGAAGCATACAC 59.298 41.667 0.00 0.00 0.00 2.90
5722 8972 3.870419 GCTGCACCAAAAACAAATGAGAA 59.130 39.130 0.00 0.00 0.00 2.87
5834 9096 9.719355 TTGTAAACAGATTCTGAATGCTACTTA 57.281 29.630 20.33 4.10 35.18 2.24
5856 9118 0.470766 ACCGACCAGCACCTTTTGTA 59.529 50.000 0.00 0.00 0.00 2.41
5868 9130 1.098712 GGTCTTGCACAAACCGACCA 61.099 55.000 12.82 0.00 42.77 4.02
5878 9140 1.668751 TGAAACTCAACGGTCTTGCAC 59.331 47.619 0.00 0.00 0.00 4.57
5902 9164 4.592485 AATTGGCATGTAACGGAAACAA 57.408 36.364 0.00 0.00 0.00 2.83
5903 9165 4.592485 AAATTGGCATGTAACGGAAACA 57.408 36.364 0.00 0.00 0.00 2.83
5904 9166 4.985409 TGAAAATTGGCATGTAACGGAAAC 59.015 37.500 0.00 0.00 0.00 2.78
5928 9193 9.899661 ACACCTAATGTTTGTTAGCTCAATATA 57.100 29.630 0.00 0.00 38.98 0.86
5929 9194 8.677300 CACACCTAATGTTTGTTAGCTCAATAT 58.323 33.333 0.00 0.00 40.64 1.28
5965 9230 0.106619 ACACACCTACCCCGCAAAAA 60.107 50.000 0.00 0.00 0.00 1.94
5966 9231 0.535553 GACACACCTACCCCGCAAAA 60.536 55.000 0.00 0.00 0.00 2.44
5967 9232 1.071814 GACACACCTACCCCGCAAA 59.928 57.895 0.00 0.00 0.00 3.68
5969 9234 1.485294 ATTGACACACCTACCCCGCA 61.485 55.000 0.00 0.00 0.00 5.69
5971 9236 2.194201 AAATTGACACACCTACCCCG 57.806 50.000 0.00 0.00 0.00 5.73
5972 9237 3.442625 GCTAAAATTGACACACCTACCCC 59.557 47.826 0.00 0.00 0.00 4.95
5973 9238 3.442625 GGCTAAAATTGACACACCTACCC 59.557 47.826 0.00 0.00 0.00 3.69
5974 9239 4.332828 AGGCTAAAATTGACACACCTACC 58.667 43.478 0.00 0.00 0.00 3.18
5975 9240 5.001232 TGAGGCTAAAATTGACACACCTAC 58.999 41.667 0.00 0.00 0.00 3.18
5976 9241 5.235850 TGAGGCTAAAATTGACACACCTA 57.764 39.130 0.00 0.00 0.00 3.08
5977 9242 4.098914 TGAGGCTAAAATTGACACACCT 57.901 40.909 0.00 0.00 0.00 4.00
5978 9243 4.846779 TTGAGGCTAAAATTGACACACC 57.153 40.909 0.00 0.00 0.00 4.16
5979 9244 4.982295 GGTTTGAGGCTAAAATTGACACAC 59.018 41.667 0.00 0.00 0.00 3.82
5980 9245 4.646945 TGGTTTGAGGCTAAAATTGACACA 59.353 37.500 0.00 0.00 0.00 3.72
5981 9246 5.009610 TCTGGTTTGAGGCTAAAATTGACAC 59.990 40.000 0.00 0.00 0.00 3.67
5983 9248 5.461526 GTCTGGTTTGAGGCTAAAATTGAC 58.538 41.667 0.00 6.05 0.00 3.18
5985 9250 4.215399 TCGTCTGGTTTGAGGCTAAAATTG 59.785 41.667 0.00 0.00 0.00 2.32
5989 9822 2.549349 GGTCGTCTGGTTTGAGGCTAAA 60.549 50.000 0.00 0.00 0.00 1.85
6027 9864 8.248945 CCTACAGATTTTACGGAGAAAGTTAGA 58.751 37.037 0.00 0.00 0.00 2.10
6028 9865 8.033626 ACCTACAGATTTTACGGAGAAAGTTAG 58.966 37.037 0.00 0.00 0.00 2.34
6038 9875 3.596214 ACTGCACCTACAGATTTTACGG 58.404 45.455 0.00 0.00 40.25 4.02
6053 9890 0.526662 ACTACTGCCGACTACTGCAC 59.473 55.000 0.00 0.00 33.15 4.57
6054 9891 2.014857 CTACTACTGCCGACTACTGCA 58.985 52.381 0.00 0.00 35.21 4.41
6056 9893 4.186926 TGTACTACTACTGCCGACTACTG 58.813 47.826 0.00 0.00 0.00 2.74
6059 9896 7.173907 GGATTAATGTACTACTACTGCCGACTA 59.826 40.741 0.00 0.00 0.00 2.59
6060 9897 6.016443 GGATTAATGTACTACTACTGCCGACT 60.016 42.308 0.00 0.00 0.00 4.18
6062 9899 5.242393 GGGATTAATGTACTACTACTGCCGA 59.758 44.000 0.00 0.00 0.00 5.54
6063 9900 5.243283 AGGGATTAATGTACTACTACTGCCG 59.757 44.000 0.00 0.00 0.00 5.69
6065 9902 7.953752 AGAAGGGATTAATGTACTACTACTGC 58.046 38.462 0.00 0.00 0.00 4.40
6069 9906 9.496710 TGGAAAGAAGGGATTAATGTACTACTA 57.503 33.333 0.00 0.00 0.00 1.82
6071 9908 7.226918 GCTGGAAAGAAGGGATTAATGTACTAC 59.773 40.741 0.00 0.00 0.00 2.73
6072 9909 7.092623 TGCTGGAAAGAAGGGATTAATGTACTA 60.093 37.037 0.00 0.00 0.00 1.82
6082 9947 1.065854 CGAGTGCTGGAAAGAAGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
6264 10169 5.007682 GGCCTTAACCTCAGTATTGTTTCA 58.992 41.667 0.00 0.00 0.00 2.69
6265 10170 4.398358 GGGCCTTAACCTCAGTATTGTTTC 59.602 45.833 0.84 0.00 0.00 2.78
6277 10188 3.953542 CTTCCATAAGGGCCTTAACCT 57.046 47.619 28.61 11.01 40.96 3.50
6288 10199 3.267031 ACAAACTCCCTCCCTTCCATAAG 59.733 47.826 0.00 0.00 0.00 1.73
6289 10200 3.265489 ACAAACTCCCTCCCTTCCATAA 58.735 45.455 0.00 0.00 0.00 1.90
6290 10201 2.929301 ACAAACTCCCTCCCTTCCATA 58.071 47.619 0.00 0.00 0.00 2.74
6291 10202 1.760405 ACAAACTCCCTCCCTTCCAT 58.240 50.000 0.00 0.00 0.00 3.41
6292 10203 1.529744 AACAAACTCCCTCCCTTCCA 58.470 50.000 0.00 0.00 0.00 3.53
6293 10204 2.158519 TGAAACAAACTCCCTCCCTTCC 60.159 50.000 0.00 0.00 0.00 3.46
6294 10205 3.223674 TGAAACAAACTCCCTCCCTTC 57.776 47.619 0.00 0.00 0.00 3.46
6295 10206 3.903530 ATGAAACAAACTCCCTCCCTT 57.096 42.857 0.00 0.00 0.00 3.95
6296 10207 5.970640 TCTATATGAAACAAACTCCCTCCCT 59.029 40.000 0.00 0.00 0.00 4.20
6297 10208 6.248569 TCTATATGAAACAAACTCCCTCCC 57.751 41.667 0.00 0.00 0.00 4.30
6298 10209 8.753497 ATTTCTATATGAAACAAACTCCCTCC 57.247 34.615 3.46 0.00 46.08 4.30
6318 10229 9.183368 CCCTATTTTGCTCTCTTCTAAATTTCT 57.817 33.333 0.00 0.00 0.00 2.52
6319 10230 8.961634 ACCCTATTTTGCTCTCTTCTAAATTTC 58.038 33.333 0.00 0.00 0.00 2.17
6320 10231 8.885693 ACCCTATTTTGCTCTCTTCTAAATTT 57.114 30.769 0.00 0.00 0.00 1.82
6321 10232 9.620259 CTACCCTATTTTGCTCTCTTCTAAATT 57.380 33.333 0.00 0.00 0.00 1.82
6322 10233 7.717436 GCTACCCTATTTTGCTCTCTTCTAAAT 59.283 37.037 0.00 0.00 0.00 1.40
6323 10234 7.048512 GCTACCCTATTTTGCTCTCTTCTAAA 58.951 38.462 0.00 0.00 0.00 1.85
6324 10235 6.156256 TGCTACCCTATTTTGCTCTCTTCTAA 59.844 38.462 0.00 0.00 0.00 2.10
6325 10236 5.661312 TGCTACCCTATTTTGCTCTCTTCTA 59.339 40.000 0.00 0.00 0.00 2.10
6326 10237 4.471386 TGCTACCCTATTTTGCTCTCTTCT 59.529 41.667 0.00 0.00 0.00 2.85
6327 10238 4.770795 TGCTACCCTATTTTGCTCTCTTC 58.229 43.478 0.00 0.00 0.00 2.87
6328 10239 4.844349 TGCTACCCTATTTTGCTCTCTT 57.156 40.909 0.00 0.00 0.00 2.85
6329 10240 4.844349 TTGCTACCCTATTTTGCTCTCT 57.156 40.909 0.00 0.00 0.00 3.10
6330 10241 6.095440 TCAATTTGCTACCCTATTTTGCTCTC 59.905 38.462 0.00 0.00 0.00 3.20
6331 10242 5.951747 TCAATTTGCTACCCTATTTTGCTCT 59.048 36.000 0.00 0.00 0.00 4.09
6332 10243 6.207691 TCAATTTGCTACCCTATTTTGCTC 57.792 37.500 0.00 0.00 0.00 4.26
6333 10244 6.796785 ATCAATTTGCTACCCTATTTTGCT 57.203 33.333 0.00 0.00 0.00 3.91
6334 10245 6.258507 CCAATCAATTTGCTACCCTATTTTGC 59.741 38.462 0.00 0.00 33.73 3.68
6335 10246 6.258507 GCCAATCAATTTGCTACCCTATTTTG 59.741 38.462 0.00 0.00 33.73 2.44
6336 10247 6.156775 AGCCAATCAATTTGCTACCCTATTTT 59.843 34.615 0.00 0.00 33.73 1.82
6337 10248 5.662657 AGCCAATCAATTTGCTACCCTATTT 59.337 36.000 0.00 0.00 33.73 1.40
6338 10249 5.069516 CAGCCAATCAATTTGCTACCCTATT 59.930 40.000 1.44 0.00 33.73 1.73
6339 10250 4.586001 CAGCCAATCAATTTGCTACCCTAT 59.414 41.667 1.44 0.00 33.73 2.57
6340 10251 3.953612 CAGCCAATCAATTTGCTACCCTA 59.046 43.478 1.44 0.00 33.73 3.53
6341 10252 2.762327 CAGCCAATCAATTTGCTACCCT 59.238 45.455 1.44 0.00 33.73 4.34
6342 10253 2.497273 ACAGCCAATCAATTTGCTACCC 59.503 45.455 1.44 0.00 33.73 3.69
6343 10254 3.874392 ACAGCCAATCAATTTGCTACC 57.126 42.857 1.44 0.00 33.73 3.18
6344 10255 6.155827 TGTAAACAGCCAATCAATTTGCTAC 58.844 36.000 1.44 0.00 33.73 3.58
6345 10256 6.338214 TGTAAACAGCCAATCAATTTGCTA 57.662 33.333 1.44 0.00 33.73 3.49
6346 10257 5.212532 TGTAAACAGCCAATCAATTTGCT 57.787 34.783 0.00 0.00 33.73 3.91
6347 10258 5.520022 CTGTAAACAGCCAATCAATTTGC 57.480 39.130 0.00 0.00 37.15 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.