Multiple sequence alignment - TraesCS3D01G159600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G159600 chr3D 100.000 4112 0 0 1 4112 129023281 129027392 0.000000e+00 7594.0
1 TraesCS3D01G159600 chr3D 80.206 778 135 19 1885 2654 310683039 310683805 2.150000e-157 566.0
2 TraesCS3D01G159600 chr3D 97.710 131 3 0 3387 3517 254826880 254827010 4.140000e-55 226.0
3 TraesCS3D01G159600 chr3D 79.216 255 49 4 2749 3001 310684034 310684286 1.520000e-39 174.0
4 TraesCS3D01G159600 chr3A 91.331 2734 120 47 657 3348 140807904 140805246 0.000000e+00 3627.0
5 TraesCS3D01G159600 chr3A 91.536 638 41 8 1 628 140808537 140807903 0.000000e+00 867.0
6 TraesCS3D01G159600 chr3A 79.794 777 140 16 1885 2654 421720843 421720077 2.160000e-152 549.0
7 TraesCS3D01G159600 chr3A 78.292 281 53 7 2749 3025 421719960 421719684 1.520000e-39 174.0
8 TraesCS3D01G159600 chr3A 87.654 81 1 3 3590 3665 140805234 140805158 7.320000e-13 86.1
9 TraesCS3D01G159600 chr3A 97.727 44 1 0 3666 3709 140805111 140805068 4.410000e-10 76.8
10 TraesCS3D01G159600 chr3B 92.669 2469 90 23 918 3348 183082383 183084798 0.000000e+00 3472.0
11 TraesCS3D01G159600 chr3B 90.806 881 56 14 1 870 183081508 183082374 0.000000e+00 1155.0
12 TraesCS3D01G159600 chr3B 80.265 755 130 18 1908 2654 410774942 410774199 6.010000e-153 551.0
13 TraesCS3D01G159600 chr3B 91.517 389 31 2 3724 4111 183084995 183085382 6.050000e-148 534.0
14 TraesCS3D01G159600 chr3B 77.580 281 55 7 2749 3025 410774098 410773822 3.290000e-36 163.0
15 TraesCS3D01G159600 chr3B 97.500 40 1 0 3670 3709 183084974 183085013 7.380000e-08 69.4
16 TraesCS3D01G159600 chr1D 81.725 777 134 8 1878 2650 137968331 137967559 3.470000e-180 641.0
17 TraesCS3D01G159600 chr1A 81.458 782 131 12 1878 2652 154700612 154701386 2.700000e-176 628.0
18 TraesCS3D01G159600 chr1A 87.861 173 15 6 3346 3517 576284616 576284449 9.020000e-47 198.0
19 TraesCS3D01G159600 chr1B 81.338 777 137 8 1878 2650 212410383 212409611 3.490000e-175 625.0
20 TraesCS3D01G159600 chr1B 88.757 169 12 6 3387 3551 447473000 447473165 2.510000e-47 200.0
21 TraesCS3D01G159600 chr6D 86.154 195 23 2 3390 3580 374102583 374102389 1.500000e-49 207.0
22 TraesCS3D01G159600 chr4A 89.157 166 11 6 3390 3551 651861269 651861107 2.510000e-47 200.0
23 TraesCS3D01G159600 chr4A 88.757 169 12 6 3387 3551 688238224 688238389 2.510000e-47 200.0
24 TraesCS3D01G159600 chr4A 91.045 67 6 0 3515 3581 413301390 413301324 1.570000e-14 91.6
25 TraesCS3D01G159600 chr4A 88.060 67 8 0 3515 3581 440180002 440180068 3.410000e-11 80.5
26 TraesCS3D01G159600 chr4A 87.879 66 8 0 3515 3580 570237412 570237347 1.230000e-10 78.7
27 TraesCS3D01G159600 chr5A 87.931 174 14 7 3349 3521 452964045 452964212 9.020000e-47 198.0
28 TraesCS3D01G159600 chr2D 86.592 179 20 4 3338 3516 590219622 590219448 1.170000e-45 195.0
29 TraesCS3D01G159600 chr7D 84.817 191 27 1 3390 3580 79632034 79631846 1.510000e-44 191.0
30 TraesCS3D01G159600 chr7D 88.571 70 5 2 3515 3581 605880588 605880519 9.470000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G159600 chr3D 129023281 129027392 4111 False 7594.000 7594 100.0000 1 4112 1 chr3D.!!$F1 4111
1 TraesCS3D01G159600 chr3D 310683039 310684286 1247 False 370.000 566 79.7110 1885 3001 2 chr3D.!!$F3 1116
2 TraesCS3D01G159600 chr3A 140805068 140808537 3469 True 1164.225 3627 92.0620 1 3709 4 chr3A.!!$R1 3708
3 TraesCS3D01G159600 chr3A 421719684 421720843 1159 True 361.500 549 79.0430 1885 3025 2 chr3A.!!$R2 1140
4 TraesCS3D01G159600 chr3B 183081508 183085382 3874 False 1307.600 3472 93.1230 1 4111 4 chr3B.!!$F1 4110
5 TraesCS3D01G159600 chr3B 410773822 410774942 1120 True 357.000 551 78.9225 1908 3025 2 chr3B.!!$R1 1117
6 TraesCS3D01G159600 chr1D 137967559 137968331 772 True 641.000 641 81.7250 1878 2650 1 chr1D.!!$R1 772
7 TraesCS3D01G159600 chr1A 154700612 154701386 774 False 628.000 628 81.4580 1878 2652 1 chr1A.!!$F1 774
8 TraesCS3D01G159600 chr1B 212409611 212410383 772 True 625.000 625 81.3380 1878 2650 1 chr1B.!!$R1 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
86 87 0.178950 ACTCAGTGCCCTGACAGAGA 60.179 55.000 3.32 0.0 42.80 3.10 F
787 814 0.179073 CCCTATGTGGTTCAGCGAGG 60.179 60.000 0.00 0.0 0.00 4.63 F
1099 1131 0.248539 CAGGGTAAGTCTCGTAGCGC 60.249 60.000 0.00 0.0 0.00 5.92 F
1102 1134 0.525029 GGTAAGTCTCGTAGCGCCAC 60.525 60.000 2.29 0.0 0.00 5.01 F
1103 1135 0.525029 GTAAGTCTCGTAGCGCCACC 60.525 60.000 2.29 0.0 0.00 4.61 F
1235 1270 1.300620 CAGGACTCGCCGTTCAACA 60.301 57.895 0.00 0.0 43.43 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1557 1601 1.002990 TCGTAGCTCGTGTCCCTGA 60.003 57.895 0.00 0.00 40.80 3.86 R
2020 2067 1.364626 GGAGCGTGATGTGCAGGAAG 61.365 60.000 0.00 0.00 34.35 3.46 R
2711 2761 1.649664 GCAACAGCGATCAGATCAGT 58.350 50.000 11.12 3.12 0.00 3.41 R
3046 3233 2.050714 CTTGCTGTTGGCGTGCAG 60.051 61.111 0.00 0.00 45.43 4.41 R
3080 3267 2.202676 CGGCTTCGAGGTCTCTGC 60.203 66.667 0.00 0.00 35.61 4.26 R
3192 3408 0.174389 CGTACATGCTCCTGCTCAGT 59.826 55.000 0.00 0.00 40.48 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.951094 GGGTAGACAGTGATTAGACTCAGT 59.049 45.833 0.00 0.00 0.00 3.41
86 87 0.178950 ACTCAGTGCCCTGACAGAGA 60.179 55.000 3.32 0.00 42.80 3.10
95 96 4.943705 GTGCCCTGACAGAGAAAAATGATA 59.056 41.667 3.32 0.00 0.00 2.15
96 97 5.591877 GTGCCCTGACAGAGAAAAATGATAT 59.408 40.000 3.32 0.00 0.00 1.63
113 114 8.876332 AAATGATATAAGGCCCCTATCTATCA 57.124 34.615 0.00 4.88 31.60 2.15
114 115 9.471016 AAATGATATAAGGCCCCTATCTATCAT 57.529 33.333 0.00 6.96 35.47 2.45
128 129 6.431234 CCTATCTATCATAAGGGTTTTGGCAC 59.569 42.308 0.00 0.00 0.00 5.01
143 144 1.586154 GGCACAATCCTCACCAACCG 61.586 60.000 0.00 0.00 0.00 4.44
146 147 1.806542 CACAATCCTCACCAACCGAAG 59.193 52.381 0.00 0.00 0.00 3.79
251 259 6.317391 ACTTGGAGCTAATTTCTATTGCTGAC 59.683 38.462 0.00 0.00 32.21 3.51
315 326 1.259142 CCCTGCATGAATTGGCACCA 61.259 55.000 0.00 0.00 35.86 4.17
328 339 6.649973 TGAATTGGCACCATTTCTTACAAATG 59.350 34.615 19.60 0.83 37.27 2.32
357 370 4.946478 AGTGATTGCCTACATCCTACTC 57.054 45.455 0.00 0.00 0.00 2.59
484 497 1.068472 GTACTGTCAGTCTGTCACCCG 60.068 57.143 9.26 0.00 0.00 5.28
488 501 4.363990 CAGTCTGTCACCCGCGCT 62.364 66.667 5.56 0.00 0.00 5.92
521 534 0.620556 GACCAGGGAAGATTCTGCCA 59.379 55.000 12.98 0.00 28.36 4.92
546 559 0.469070 CTCTGGAATCCTCTGCCCAG 59.531 60.000 0.00 0.00 45.63 4.45
558 571 1.741327 CTGCCCAGCATTGCCATACC 61.741 60.000 4.70 0.00 38.13 2.73
654 668 5.401376 CGAAATATATACATACGGCCATCGG 59.599 44.000 2.24 0.00 44.45 4.18
699 721 0.179189 GCGCATGTACACTTGCCTTC 60.179 55.000 14.29 2.61 42.07 3.46
760 787 1.677576 TGAAGCTGGCAGAAACTTGTG 59.322 47.619 20.86 0.00 0.00 3.33
764 791 3.754965 AGCTGGCAGAAACTTGTGATAA 58.245 40.909 20.86 0.00 0.00 1.75
787 814 0.179073 CCCTATGTGGTTCAGCGAGG 60.179 60.000 0.00 0.00 0.00 4.63
813 840 3.053828 CAGGCAGCTGGTTTTGGG 58.946 61.111 17.12 0.00 0.00 4.12
834 861 1.429930 TCAGTTCCAGTAGCACCCAA 58.570 50.000 0.00 0.00 0.00 4.12
865 896 2.367486 AGTAACCGAGCTACTGAGGAC 58.633 52.381 0.00 0.00 0.00 3.85
870 901 2.028130 CCGAGCTACTGAGGACTGATT 58.972 52.381 0.00 0.00 0.00 2.57
875 906 3.628487 AGCTACTGAGGACTGATTACGTC 59.372 47.826 0.00 0.00 0.00 4.34
887 918 3.472652 TGATTACGTCAGGTTGCAAAGT 58.527 40.909 0.00 0.00 31.80 2.66
888 919 3.880490 TGATTACGTCAGGTTGCAAAGTT 59.120 39.130 0.00 0.00 31.80 2.66
889 920 4.336993 TGATTACGTCAGGTTGCAAAGTTT 59.663 37.500 0.00 0.00 31.80 2.66
890 921 2.559998 ACGTCAGGTTGCAAAGTTTG 57.440 45.000 11.41 11.41 0.00 2.93
903 934 4.813296 CAAAGTTTGCTCTCGTAAGGTT 57.187 40.909 1.96 0.00 38.47 3.50
904 935 5.917541 CAAAGTTTGCTCTCGTAAGGTTA 57.082 39.130 1.96 0.00 38.47 2.85
905 936 6.295039 CAAAGTTTGCTCTCGTAAGGTTAA 57.705 37.500 1.96 0.00 38.47 2.01
910 941 8.788325 AGTTTGCTCTCGTAAGGTTAATAATT 57.212 30.769 0.00 0.00 38.47 1.40
933 964 2.450345 GCGAATCGGTGGTTCGGTC 61.450 63.158 13.38 0.00 46.20 4.79
944 975 0.580104 GGTTCGGTCACTGTGTTTCG 59.420 55.000 7.79 10.10 0.00 3.46
964 995 8.499967 TGTTTCGATCGTTTTTCTGATTGATAA 58.500 29.630 15.94 0.00 35.48 1.75
965 996 8.776802 GTTTCGATCGTTTTTCTGATTGATAAC 58.223 33.333 15.94 0.00 35.48 1.89
966 997 6.692392 TCGATCGTTTTTCTGATTGATAACG 58.308 36.000 15.94 0.00 40.86 3.18
1010 1042 1.141881 CGAGGTTGATGGAGACGGG 59.858 63.158 0.00 0.00 0.00 5.28
1014 1046 1.519455 GTTGATGGAGACGGGCGAG 60.519 63.158 0.00 0.00 0.00 5.03
1094 1126 0.896226 GCCTTCAGGGTAAGTCTCGT 59.104 55.000 0.00 0.00 37.43 4.18
1095 1127 2.097825 GCCTTCAGGGTAAGTCTCGTA 58.902 52.381 0.00 0.00 37.43 3.43
1096 1128 2.099427 GCCTTCAGGGTAAGTCTCGTAG 59.901 54.545 0.00 0.00 37.43 3.51
1097 1129 2.099427 CCTTCAGGGTAAGTCTCGTAGC 59.901 54.545 0.00 0.00 0.00 3.58
1098 1130 1.376543 TCAGGGTAAGTCTCGTAGCG 58.623 55.000 0.00 0.00 0.00 4.26
1099 1131 0.248539 CAGGGTAAGTCTCGTAGCGC 60.249 60.000 0.00 0.00 0.00 5.92
1100 1132 1.065436 GGGTAAGTCTCGTAGCGCC 59.935 63.158 2.29 0.00 0.00 6.53
1101 1133 1.660560 GGGTAAGTCTCGTAGCGCCA 61.661 60.000 2.29 0.00 0.00 5.69
1102 1134 0.525029 GGTAAGTCTCGTAGCGCCAC 60.525 60.000 2.29 0.00 0.00 5.01
1103 1135 0.525029 GTAAGTCTCGTAGCGCCACC 60.525 60.000 2.29 0.00 0.00 4.61
1104 1136 1.985447 TAAGTCTCGTAGCGCCACCG 61.985 60.000 2.29 3.83 37.57 4.94
1232 1267 4.373116 GCCAGGACTCGCCGTTCA 62.373 66.667 0.00 0.00 43.43 3.18
1235 1270 1.300620 CAGGACTCGCCGTTCAACA 60.301 57.895 0.00 0.00 43.43 3.33
1246 1281 3.033764 TTCAACACGTCCGCGCTC 61.034 61.111 5.56 0.00 42.83 5.03
1247 1282 3.493830 TTCAACACGTCCGCGCTCT 62.494 57.895 5.56 0.00 42.83 4.09
1248 1283 2.964438 TTCAACACGTCCGCGCTCTT 62.964 55.000 5.56 0.00 42.83 2.85
1249 1284 2.279918 AACACGTCCGCGCTCTTT 60.280 55.556 5.56 0.00 42.83 2.52
1251 1286 4.430423 CACGTCCGCGCTCTTTGC 62.430 66.667 5.56 0.00 42.83 3.68
1282 1317 4.459089 GTCTCCGTCAGCCTGCCC 62.459 72.222 0.00 0.00 0.00 5.36
2320 2370 3.147595 CAGTGGATCTCCGGCGGA 61.148 66.667 29.14 29.14 39.43 5.54
2675 2725 1.766461 ACCTCGGTGGATCCCCATC 60.766 63.158 9.90 0.00 45.68 3.51
2698 2748 2.355126 CATGGCCGGTCTCGATCG 60.355 66.667 7.97 9.36 39.00 3.69
2700 2750 2.846652 ATGGCCGGTCTCGATCGAC 61.847 63.158 15.15 6.01 37.01 4.20
3059 3246 4.081030 CGAGCTGCACGCCAACAG 62.081 66.667 6.53 0.00 40.39 3.16
3105 3292 1.179814 ACCTCGAAGCCGCCTATAGG 61.180 60.000 15.01 15.01 38.53 2.57
3191 3407 3.330766 GACTGGTCGATCGTGGAAG 57.669 57.895 15.94 11.01 0.00 3.46
3192 3408 0.809385 GACTGGTCGATCGTGGAAGA 59.191 55.000 15.94 0.00 0.00 2.87
3193 3409 0.526662 ACTGGTCGATCGTGGAAGAC 59.473 55.000 15.94 4.33 0.00 3.01
3237 3453 1.336980 GGGACGTGTCTTGGAGAGTTC 60.337 57.143 0.00 0.00 0.00 3.01
3262 3478 3.555428 GTCGAGTTGACTGCTGCC 58.445 61.111 3.00 0.00 44.58 4.85
3348 3570 2.028484 CGCGTGGTGGTGTGTAGT 59.972 61.111 0.00 0.00 0.00 2.73
3349 3571 1.286570 CGCGTGGTGGTGTGTAGTA 59.713 57.895 0.00 0.00 0.00 1.82
3350 3572 1.005294 CGCGTGGTGGTGTGTAGTAC 61.005 60.000 0.00 0.00 0.00 2.73
3351 3573 0.316204 GCGTGGTGGTGTGTAGTACT 59.684 55.000 0.00 0.00 0.00 2.73
3352 3574 1.668047 GCGTGGTGGTGTGTAGTACTC 60.668 57.143 0.00 0.00 0.00 2.59
3353 3575 1.068055 CGTGGTGGTGTGTAGTACTCC 60.068 57.143 0.00 0.00 42.11 3.85
3356 3578 1.823610 GGTGGTGTGTAGTACTCCCTC 59.176 57.143 0.00 3.42 41.28 4.30
3357 3579 1.823610 GTGGTGTGTAGTACTCCCTCC 59.176 57.143 0.00 0.00 41.28 4.30
3359 3581 1.615384 GGTGTGTAGTACTCCCTCCGT 60.615 57.143 0.00 0.00 37.04 4.69
3360 3582 2.356125 GGTGTGTAGTACTCCCTCCGTA 60.356 54.545 0.00 0.00 37.04 4.02
3361 3583 2.941720 GTGTGTAGTACTCCCTCCGTAG 59.058 54.545 0.00 0.00 0.00 3.51
3362 3584 2.840038 TGTGTAGTACTCCCTCCGTAGA 59.160 50.000 0.00 0.00 0.00 2.59
3363 3585 3.202097 GTGTAGTACTCCCTCCGTAGAC 58.798 54.545 0.00 0.00 0.00 2.59
3364 3586 3.110705 TGTAGTACTCCCTCCGTAGACT 58.889 50.000 0.00 0.00 0.00 3.24
3365 3587 4.100189 GTGTAGTACTCCCTCCGTAGACTA 59.900 50.000 0.00 0.00 0.00 2.59
3366 3588 4.716784 TGTAGTACTCCCTCCGTAGACTAA 59.283 45.833 0.00 0.00 0.00 2.24
3367 3589 5.367937 TGTAGTACTCCCTCCGTAGACTAAT 59.632 44.000 0.00 0.00 0.00 1.73
3368 3590 6.554982 TGTAGTACTCCCTCCGTAGACTAATA 59.445 42.308 0.00 0.00 0.00 0.98
3369 3591 5.863965 AGTACTCCCTCCGTAGACTAATAC 58.136 45.833 0.00 0.00 0.00 1.89
3370 3592 5.606329 AGTACTCCCTCCGTAGACTAATACT 59.394 44.000 0.00 0.00 0.00 2.12
3371 3593 4.971939 ACTCCCTCCGTAGACTAATACTC 58.028 47.826 0.00 0.00 0.00 2.59
3372 3594 4.202451 ACTCCCTCCGTAGACTAATACTCC 60.202 50.000 0.00 0.00 0.00 3.85
3373 3595 3.718434 TCCCTCCGTAGACTAATACTCCA 59.282 47.826 0.00 0.00 0.00 3.86
3374 3596 4.353191 TCCCTCCGTAGACTAATACTCCAT 59.647 45.833 0.00 0.00 0.00 3.41
3375 3597 4.701171 CCCTCCGTAGACTAATACTCCATC 59.299 50.000 0.00 0.00 0.00 3.51
3376 3598 4.701171 CCTCCGTAGACTAATACTCCATCC 59.299 50.000 0.00 0.00 0.00 3.51
3377 3599 4.321718 TCCGTAGACTAATACTCCATCCG 58.678 47.826 0.00 0.00 0.00 4.18
3378 3600 4.070716 CCGTAGACTAATACTCCATCCGT 58.929 47.826 0.00 0.00 0.00 4.69
3379 3601 4.518211 CCGTAGACTAATACTCCATCCGTT 59.482 45.833 0.00 0.00 0.00 4.44
3380 3602 5.334724 CCGTAGACTAATACTCCATCCGTTC 60.335 48.000 0.00 0.00 0.00 3.95
3381 3603 5.334724 CGTAGACTAATACTCCATCCGTTCC 60.335 48.000 0.00 0.00 0.00 3.62
3382 3604 4.805744 AGACTAATACTCCATCCGTTCCT 58.194 43.478 0.00 0.00 0.00 3.36
3383 3605 5.950023 AGACTAATACTCCATCCGTTCCTA 58.050 41.667 0.00 0.00 0.00 2.94
3384 3606 6.371278 AGACTAATACTCCATCCGTTCCTAA 58.629 40.000 0.00 0.00 0.00 2.69
3385 3607 6.837568 AGACTAATACTCCATCCGTTCCTAAA 59.162 38.462 0.00 0.00 0.00 1.85
3386 3608 7.343833 AGACTAATACTCCATCCGTTCCTAAAA 59.656 37.037 0.00 0.00 0.00 1.52
3387 3609 7.498443 ACTAATACTCCATCCGTTCCTAAAAG 58.502 38.462 0.00 0.00 0.00 2.27
3388 3610 3.629142 ACTCCATCCGTTCCTAAAAGG 57.371 47.619 0.00 0.00 35.55 3.11
3389 3611 2.910977 ACTCCATCCGTTCCTAAAAGGT 59.089 45.455 0.00 0.00 36.53 3.50
3390 3612 3.329814 ACTCCATCCGTTCCTAAAAGGTT 59.670 43.478 0.00 0.00 36.53 3.50
3391 3613 4.202535 ACTCCATCCGTTCCTAAAAGGTTT 60.203 41.667 0.00 0.00 36.53 3.27
3392 3614 4.329392 TCCATCCGTTCCTAAAAGGTTTC 58.671 43.478 0.00 0.00 36.53 2.78
3393 3615 4.076394 CCATCCGTTCCTAAAAGGTTTCA 58.924 43.478 0.00 0.00 36.53 2.69
3394 3616 4.521256 CCATCCGTTCCTAAAAGGTTTCAA 59.479 41.667 0.00 0.00 36.53 2.69
3395 3617 5.010213 CCATCCGTTCCTAAAAGGTTTCAAA 59.990 40.000 0.00 0.00 36.53 2.69
3396 3618 6.295067 CCATCCGTTCCTAAAAGGTTTCAAAT 60.295 38.462 0.00 0.00 36.53 2.32
3397 3619 6.079424 TCCGTTCCTAAAAGGTTTCAAATG 57.921 37.500 0.00 0.00 36.53 2.32
3398 3620 5.828859 TCCGTTCCTAAAAGGTTTCAAATGA 59.171 36.000 0.00 0.00 36.53 2.57
3399 3621 6.492087 TCCGTTCCTAAAAGGTTTCAAATGAT 59.508 34.615 0.00 0.00 36.53 2.45
3400 3622 7.014808 TCCGTTCCTAAAAGGTTTCAAATGATT 59.985 33.333 0.00 0.00 36.53 2.57
3401 3623 8.301002 CCGTTCCTAAAAGGTTTCAAATGATTA 58.699 33.333 0.00 0.00 36.53 1.75
3402 3624 9.124807 CGTTCCTAAAAGGTTTCAAATGATTAC 57.875 33.333 0.00 0.00 36.53 1.89
3403 3625 9.419297 GTTCCTAAAAGGTTTCAAATGATTACC 57.581 33.333 6.98 6.98 36.53 2.85
3404 3626 8.713708 TCCTAAAAGGTTTCAAATGATTACCA 57.286 30.769 14.13 0.00 36.53 3.25
3405 3627 8.581578 TCCTAAAAGGTTTCAAATGATTACCAC 58.418 33.333 14.13 0.00 36.53 4.16
3406 3628 8.364142 CCTAAAAGGTTTCAAATGATTACCACA 58.636 33.333 14.13 0.00 33.85 4.17
3407 3629 9.927668 CTAAAAGGTTTCAAATGATTACCACAT 57.072 29.630 14.13 0.00 33.85 3.21
3409 3631 9.705290 AAAAGGTTTCAAATGATTACCACATAC 57.295 29.630 14.13 0.00 33.85 2.39
3410 3632 8.415950 AAGGTTTCAAATGATTACCACATACA 57.584 30.769 14.13 0.00 33.85 2.29
3411 3633 8.055279 AGGTTTCAAATGATTACCACATACAG 57.945 34.615 14.13 0.00 33.85 2.74
3412 3634 7.888021 AGGTTTCAAATGATTACCACATACAGA 59.112 33.333 14.13 0.00 33.85 3.41
3413 3635 8.686334 GGTTTCAAATGATTACCACATACAGAT 58.314 33.333 9.23 0.00 32.54 2.90
3414 3636 9.507280 GTTTCAAATGATTACCACATACAGATG 57.493 33.333 0.00 0.00 39.16 2.90
3416 3638 9.898152 TTCAAATGATTACCACATACAGATGTA 57.102 29.630 0.00 0.00 44.82 2.29
3457 3679 7.440523 AGTGTAGATTCACTCATTTTGTTCC 57.559 36.000 0.00 0.00 44.07 3.62
3458 3680 6.147821 AGTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 44.07 4.30
3459 3681 5.995282 TGTAGATTCACTCATTTTGTTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
3460 3682 7.117236 GTGTAGATTCACTCATTTTGTTCCGTA 59.883 37.037 0.00 0.00 35.68 4.02
3461 3683 7.822334 TGTAGATTCACTCATTTTGTTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
3462 3684 7.076842 AGATTCACTCATTTTGTTCCGTATG 57.923 36.000 0.00 0.00 0.00 2.39
3463 3685 6.655003 AGATTCACTCATTTTGTTCCGTATGT 59.345 34.615 0.00 0.00 0.00 2.29
3464 3686 7.822334 AGATTCACTCATTTTGTTCCGTATGTA 59.178 33.333 0.00 0.00 0.00 2.29
3465 3687 6.961359 TCACTCATTTTGTTCCGTATGTAG 57.039 37.500 0.00 0.00 0.00 2.74
3466 3688 6.460781 TCACTCATTTTGTTCCGTATGTAGT 58.539 36.000 0.00 0.00 0.00 2.73
3467 3689 6.588756 TCACTCATTTTGTTCCGTATGTAGTC 59.411 38.462 0.00 0.00 0.00 2.59
3468 3690 6.367695 CACTCATTTTGTTCCGTATGTAGTCA 59.632 38.462 0.00 0.00 0.00 3.41
3469 3691 6.367969 ACTCATTTTGTTCCGTATGTAGTCAC 59.632 38.462 0.00 0.00 0.00 3.67
3470 3692 6.460781 TCATTTTGTTCCGTATGTAGTCACT 58.539 36.000 0.00 0.00 0.00 3.41
3471 3693 6.932400 TCATTTTGTTCCGTATGTAGTCACTT 59.068 34.615 0.00 0.00 0.00 3.16
3472 3694 6.533819 TTTTGTTCCGTATGTAGTCACTTG 57.466 37.500 0.00 0.00 0.00 3.16
3473 3695 4.859304 TGTTCCGTATGTAGTCACTTGT 57.141 40.909 0.00 0.00 0.00 3.16
3474 3696 5.204409 TGTTCCGTATGTAGTCACTTGTT 57.796 39.130 0.00 0.00 0.00 2.83
3475 3697 4.986034 TGTTCCGTATGTAGTCACTTGTTG 59.014 41.667 0.00 0.00 0.00 3.33
3476 3698 5.221283 TGTTCCGTATGTAGTCACTTGTTGA 60.221 40.000 0.00 0.00 0.00 3.18
3477 3699 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3478 3700 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3479 3701 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3480 3702 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
3481 3703 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
3482 3704 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
3483 3705 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
3484 3706 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
3485 3707 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
3486 3708 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
3487 3709 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
3488 3710 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
3489 3711 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
3490 3712 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
3491 3713 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
3492 3714 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3493 3715 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3494 3716 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
3495 3717 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3507 3729 9.635520 TCTAGAAAGACAAGTATTTAGAAACGG 57.364 33.333 0.00 0.00 0.00 4.44
3508 3730 9.635520 CTAGAAAGACAAGTATTTAGAAACGGA 57.364 33.333 0.00 0.00 0.00 4.69
3509 3731 8.535690 AGAAAGACAAGTATTTAGAAACGGAG 57.464 34.615 0.00 0.00 0.00 4.63
3510 3732 7.603024 AGAAAGACAAGTATTTAGAAACGGAGG 59.397 37.037 0.00 0.00 0.00 4.30
3511 3733 5.731591 AGACAAGTATTTAGAAACGGAGGG 58.268 41.667 0.00 0.00 0.00 4.30
3512 3734 5.482878 AGACAAGTATTTAGAAACGGAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
3513 3735 5.731591 ACAAGTATTTAGAAACGGAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
3514 3736 5.247792 ACAAGTATTTAGAAACGGAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
3515 3737 6.438425 ACAAGTATTTAGAAACGGAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
3516 3738 7.125356 ACAAGTATTTAGAAACGGAGGGAGTAT 59.875 37.037 0.00 0.00 0.00 2.12
3517 3739 8.636213 CAAGTATTTAGAAACGGAGGGAGTATA 58.364 37.037 0.00 0.00 0.00 1.47
3518 3740 8.773033 AGTATTTAGAAACGGAGGGAGTATAA 57.227 34.615 0.00 0.00 0.00 0.98
3519 3741 8.858094 AGTATTTAGAAACGGAGGGAGTATAAG 58.142 37.037 0.00 0.00 0.00 1.73
3520 3742 7.909485 ATTTAGAAACGGAGGGAGTATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
3521 3743 6.956202 TTAGAAACGGAGGGAGTATAAGAG 57.044 41.667 0.00 0.00 0.00 2.85
3522 3744 4.869451 AGAAACGGAGGGAGTATAAGAGT 58.131 43.478 0.00 0.00 0.00 3.24
3523 3745 4.645588 AGAAACGGAGGGAGTATAAGAGTG 59.354 45.833 0.00 0.00 0.00 3.51
3524 3746 3.666345 ACGGAGGGAGTATAAGAGTGT 57.334 47.619 0.00 0.00 0.00 3.55
3525 3747 3.978610 ACGGAGGGAGTATAAGAGTGTT 58.021 45.455 0.00 0.00 0.00 3.32
3526 3748 4.351127 ACGGAGGGAGTATAAGAGTGTTT 58.649 43.478 0.00 0.00 0.00 2.83
3527 3749 5.513233 ACGGAGGGAGTATAAGAGTGTTTA 58.487 41.667 0.00 0.00 0.00 2.01
3528 3750 6.134754 ACGGAGGGAGTATAAGAGTGTTTAT 58.865 40.000 0.00 0.00 0.00 1.40
3529 3751 7.293073 ACGGAGGGAGTATAAGAGTGTTTATA 58.707 38.462 0.00 0.00 0.00 0.98
3530 3752 7.949006 ACGGAGGGAGTATAAGAGTGTTTATAT 59.051 37.037 0.00 0.00 30.55 0.86
3531 3753 8.460428 CGGAGGGAGTATAAGAGTGTTTATATC 58.540 40.741 0.00 0.00 30.55 1.63
3532 3754 9.310449 GGAGGGAGTATAAGAGTGTTTATATCA 57.690 37.037 0.00 0.00 30.55 2.15
3534 3756 9.884814 AGGGAGTATAAGAGTGTTTATATCACT 57.115 33.333 9.78 9.78 46.86 3.41
3586 3808 8.537728 TTAATTTACAGAGGGAATACGTAGGA 57.462 34.615 0.08 0.00 0.00 2.94
3587 3809 5.841957 TTTACAGAGGGAATACGTAGGAC 57.158 43.478 0.08 0.00 0.00 3.85
3588 3810 2.664015 ACAGAGGGAATACGTAGGACC 58.336 52.381 0.08 2.77 0.00 4.46
3616 3841 5.121811 AGAGATGCTGTTACTTATGGCTTG 58.878 41.667 0.00 0.00 0.00 4.01
3617 3842 3.629398 AGATGCTGTTACTTATGGCTTGC 59.371 43.478 0.00 0.00 0.00 4.01
3618 3843 3.071874 TGCTGTTACTTATGGCTTGCT 57.928 42.857 0.00 0.00 0.00 3.91
3619 3844 3.420893 TGCTGTTACTTATGGCTTGCTT 58.579 40.909 0.00 0.00 0.00 3.91
3660 3890 3.808174 GGCTGTACAATAAATCCGTCTCC 59.192 47.826 0.00 0.00 0.00 3.71
3666 3896 4.056050 ACAATAAATCCGTCTCCGTATGC 58.944 43.478 0.00 0.00 0.00 3.14
3667 3897 4.202223 ACAATAAATCCGTCTCCGTATGCT 60.202 41.667 0.00 0.00 0.00 3.79
3752 4088 3.853727 CGAAGCATGTCAATATGTCACG 58.146 45.455 0.00 0.00 0.00 4.35
3773 4109 0.981943 CCACCTTTTCCCCTACGAGT 59.018 55.000 0.00 0.00 0.00 4.18
3786 4122 7.385778 TCCCCTACGAGTTATTGAAAATTTG 57.614 36.000 0.00 0.00 0.00 2.32
3792 4128 9.393249 CTACGAGTTATTGAAAATTTGAGCAAA 57.607 29.630 0.00 0.00 34.46 3.68
3898 4234 7.612065 AGTAGTCATGCAATAGGGTACATAA 57.388 36.000 0.00 0.00 0.00 1.90
3917 4253 9.710900 GTACATAACAGATGAACATCATATGGA 57.289 33.333 22.85 17.91 46.97 3.41
3924 4260 8.093307 ACAGATGAACATCATATGGACATCTAC 58.907 37.037 16.59 8.25 46.97 2.59
3948 4284 4.753610 GGATAAAAATAGTAGACCGGGCAC 59.246 45.833 11.69 5.81 0.00 5.01
3949 4285 2.304751 AAAATAGTAGACCGGGCACG 57.695 50.000 11.69 0.00 40.55 5.34
3964 4300 0.320421 GCACGGTGCCTAACAGAAGA 60.320 55.000 22.19 0.00 37.42 2.87
3968 4304 1.546476 CGGTGCCTAACAGAAGAGAGT 59.454 52.381 0.00 0.00 0.00 3.24
3970 4306 3.427773 CGGTGCCTAACAGAAGAGAGTAC 60.428 52.174 0.00 0.00 0.00 2.73
3978 4314 7.148052 GCCTAACAGAAGAGAGTACAAGACATA 60.148 40.741 0.00 0.00 0.00 2.29
3981 4317 7.151999 ACAGAAGAGAGTACAAGACATACAG 57.848 40.000 0.00 0.00 0.00 2.74
3987 4323 2.561419 AGTACAAGACATACAGTGCGGT 59.439 45.455 0.00 0.00 0.00 5.68
4003 4339 1.537202 GCGGTGAAAGAAGATGCAAGT 59.463 47.619 0.00 0.00 0.00 3.16
4009 4345 4.972440 GTGAAAGAAGATGCAAGTGTTGTC 59.028 41.667 0.00 0.00 0.00 3.18
4047 4384 0.595310 TGCGTCGTTCGTCATGTCAA 60.595 50.000 0.00 0.00 42.13 3.18
4049 4386 0.708370 CGTCGTTCGTCATGTCAAGG 59.292 55.000 0.00 0.00 34.52 3.61
4051 4388 1.986378 GTCGTTCGTCATGTCAAGGAG 59.014 52.381 0.00 0.00 0.00 3.69
4064 4401 3.054875 TGTCAAGGAGGAGGTGATCAATG 60.055 47.826 0.00 0.00 0.00 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 3.507162 TCATTTTTCTCTGTCAGGGCA 57.493 42.857 0.00 0.00 0.00 5.36
74 75 7.040823 CCTTATATCATTTTTCTCTGTCAGGGC 60.041 40.741 0.00 0.00 0.00 5.19
95 96 6.153924 CCCTTATGATAGATAGGGGCCTTAT 58.846 44.000 8.06 8.06 43.04 1.73
96 97 5.538877 CCCTTATGATAGATAGGGGCCTTA 58.461 45.833 0.84 0.00 43.04 2.69
113 114 3.769300 GAGGATTGTGCCAAAACCCTTAT 59.231 43.478 0.00 0.00 0.00 1.73
114 115 3.161866 GAGGATTGTGCCAAAACCCTTA 58.838 45.455 0.00 0.00 0.00 2.69
128 129 0.804989 GCTTCGGTTGGTGAGGATTG 59.195 55.000 0.00 0.00 0.00 2.67
134 135 1.896660 GGCTTGCTTCGGTTGGTGA 60.897 57.895 0.00 0.00 0.00 4.02
137 138 1.243902 TTAAGGCTTGCTTCGGTTGG 58.756 50.000 10.69 0.00 0.00 3.77
143 144 5.835113 TGGTCATATTTAAGGCTTGCTTC 57.165 39.130 10.69 0.00 0.00 3.86
146 147 5.067674 TGTCATGGTCATATTTAAGGCTTGC 59.932 40.000 10.69 0.00 0.00 4.01
224 226 6.317140 CAGCAATAGAAATTAGCTCCAAGTCA 59.683 38.462 0.00 0.00 31.40 3.41
227 229 6.510799 CGTCAGCAATAGAAATTAGCTCCAAG 60.511 42.308 0.00 0.00 31.40 3.61
231 233 5.751028 AGACGTCAGCAATAGAAATTAGCTC 59.249 40.000 19.50 0.00 31.40 4.09
251 259 2.557056 TCTACCAGTTTCACCTCAGACG 59.443 50.000 0.00 0.00 0.00 4.18
337 348 4.672587 TGAGTAGGATGTAGGCAATCAC 57.327 45.455 0.00 0.00 0.00 3.06
338 349 5.509670 CGATTGAGTAGGATGTAGGCAATCA 60.510 44.000 0.00 0.00 39.80 2.57
339 350 4.926238 CGATTGAGTAGGATGTAGGCAATC 59.074 45.833 0.00 0.00 37.71 2.67
484 497 1.521681 CTGCTGGTAACCCTAGCGC 60.522 63.158 0.00 0.00 37.56 5.92
488 501 1.568504 CTGGTCTGCTGGTAACCCTA 58.431 55.000 0.00 0.00 31.78 3.53
521 534 2.102252 GCAGAGGATTCCAGAGACGAAT 59.898 50.000 5.29 0.00 32.62 3.34
546 559 2.542907 CCGACGGGTATGGCAATGC 61.543 63.158 5.81 0.00 0.00 3.56
558 571 1.878522 CTCAGGATTTCGCCGACGG 60.879 63.158 10.29 10.29 40.63 4.79
590 604 6.679884 GCAAGATGTCAAAGGAAATGGATCTC 60.680 42.308 0.00 0.00 0.00 2.75
654 668 1.939785 CAGCTCGACGCCGATGTAC 60.940 63.158 0.00 0.00 44.62 2.90
717 739 1.196808 ACAAAATGATCACGGCGTGTC 59.803 47.619 35.65 29.66 34.79 3.67
760 787 5.408604 CGCTGAACCACATAGGGTATTTATC 59.591 44.000 0.00 0.00 37.53 1.75
764 791 2.769663 TCGCTGAACCACATAGGGTATT 59.230 45.455 0.00 0.00 37.53 1.89
813 840 1.071699 TGGGTGCTACTGGAACTGAAC 59.928 52.381 0.00 0.00 0.00 3.18
834 861 5.662674 AGCTCGGTTACTTATTCTTCAGT 57.337 39.130 0.00 0.00 0.00 3.41
870 901 3.684103 CAAACTTTGCAACCTGACGTA 57.316 42.857 0.00 0.00 0.00 3.57
882 913 4.813296 AACCTTACGAGAGCAAACTTTG 57.187 40.909 0.00 0.00 0.00 2.77
883 914 8.611654 TTATTAACCTTACGAGAGCAAACTTT 57.388 30.769 0.00 0.00 0.00 2.66
884 915 8.788325 ATTATTAACCTTACGAGAGCAAACTT 57.212 30.769 0.00 0.00 0.00 2.66
885 916 8.788325 AATTATTAACCTTACGAGAGCAAACT 57.212 30.769 0.00 0.00 0.00 2.66
886 917 9.911980 GTAATTATTAACCTTACGAGAGCAAAC 57.088 33.333 0.00 0.00 0.00 2.93
887 918 8.810427 CGTAATTATTAACCTTACGAGAGCAAA 58.190 33.333 15.57 0.00 46.45 3.68
888 919 8.190122 TCGTAATTATTAACCTTACGAGAGCAA 58.810 33.333 17.75 3.44 46.78 3.91
889 920 7.706159 TCGTAATTATTAACCTTACGAGAGCA 58.294 34.615 17.75 3.92 46.78 4.26
895 926 6.974677 TCGCTCGTAATTATTAACCTTACG 57.025 37.500 14.92 14.92 45.47 3.18
896 927 8.152159 CGATTCGCTCGTAATTATTAACCTTAC 58.848 37.037 0.00 0.00 42.56 2.34
897 928 7.326789 CCGATTCGCTCGTAATTATTAACCTTA 59.673 37.037 0.00 0.00 46.18 2.69
898 929 6.145048 CCGATTCGCTCGTAATTATTAACCTT 59.855 38.462 0.00 0.00 46.18 3.50
899 930 5.632347 CCGATTCGCTCGTAATTATTAACCT 59.368 40.000 0.00 0.00 46.18 3.50
900 931 5.403466 ACCGATTCGCTCGTAATTATTAACC 59.597 40.000 0.00 0.00 46.18 2.85
901 932 6.286941 CACCGATTCGCTCGTAATTATTAAC 58.713 40.000 0.00 0.00 46.18 2.01
902 933 5.403166 CCACCGATTCGCTCGTAATTATTAA 59.597 40.000 0.00 0.00 46.18 1.40
903 934 4.919168 CCACCGATTCGCTCGTAATTATTA 59.081 41.667 0.00 0.00 46.18 0.98
904 935 3.739300 CCACCGATTCGCTCGTAATTATT 59.261 43.478 0.00 0.00 46.18 1.40
905 936 3.243636 ACCACCGATTCGCTCGTAATTAT 60.244 43.478 0.00 0.00 46.18 1.28
910 941 0.179156 GAACCACCGATTCGCTCGTA 60.179 55.000 0.00 0.00 46.18 3.43
914 945 2.125673 CCGAACCACCGATTCGCT 60.126 61.111 0.00 0.00 45.95 4.93
933 964 4.666176 CAGAAAAACGATCGAAACACAGTG 59.334 41.667 24.34 0.00 0.00 3.66
944 975 6.192863 GCACGTTATCAATCAGAAAAACGATC 59.807 38.462 17.21 8.55 45.21 3.69
964 995 2.024918 CAAGGCAAGTGAAGCACGT 58.975 52.632 0.00 0.00 39.64 4.49
965 996 1.370900 GCAAGGCAAGTGAAGCACG 60.371 57.895 0.00 0.00 39.64 5.34
966 997 0.318445 CTGCAAGGCAAGTGAAGCAC 60.318 55.000 0.00 0.00 38.41 4.40
1232 1267 2.279918 AAAGAGCGCGGACGTGTT 60.280 55.556 8.83 0.18 42.83 3.32
1282 1317 3.358076 GAACCTGGACGGAGAGGCG 62.358 68.421 0.00 0.00 36.31 5.52
1495 1530 3.170672 TGCAGCACCTGGGACTGT 61.171 61.111 16.52 0.00 33.87 3.55
1557 1601 1.002990 TCGTAGCTCGTGTCCCTGA 60.003 57.895 0.00 0.00 40.80 3.86
1696 1743 4.815973 ATGGAGTAGGGGCGGCCA 62.816 66.667 30.95 7.24 0.00 5.36
2020 2067 1.364626 GGAGCGTGATGTGCAGGAAG 61.365 60.000 0.00 0.00 34.35 3.46
2512 2562 4.265507 ACCGGGTGGAGGTCCCTT 62.266 66.667 6.32 0.00 42.56 3.95
2700 2750 3.961480 TCAGATCAGTTACCACACTGG 57.039 47.619 0.00 0.00 43.92 4.00
2702 2752 3.429547 GCGATCAGATCAGTTACCACACT 60.430 47.826 11.12 0.00 0.00 3.55
2704 2754 2.760650 AGCGATCAGATCAGTTACCACA 59.239 45.455 11.12 0.00 0.00 4.17
2705 2755 3.119291 CAGCGATCAGATCAGTTACCAC 58.881 50.000 11.12 0.00 0.00 4.16
2709 2759 3.190079 GCAACAGCGATCAGATCAGTTA 58.810 45.455 11.12 0.00 0.00 2.24
2710 2760 2.005451 GCAACAGCGATCAGATCAGTT 58.995 47.619 11.12 8.72 0.00 3.16
2711 2761 1.649664 GCAACAGCGATCAGATCAGT 58.350 50.000 11.12 3.12 0.00 3.41
3019 3206 4.473520 CTCGGCGATGGGGCTGTT 62.474 66.667 11.27 0.00 40.26 3.16
3025 3212 2.237751 CGTTTAGCTCGGCGATGGG 61.238 63.158 11.27 0.00 0.00 4.00
3046 3233 2.050714 CTTGCTGTTGGCGTGCAG 60.051 61.111 0.00 0.00 45.43 4.41
3053 3240 3.726517 CGGCGTCCTTGCTGTTGG 61.727 66.667 0.00 0.00 36.47 3.77
3073 3260 2.894387 GAGGTCTCTGCATGCGGC 60.894 66.667 22.21 7.86 45.13 6.53
3080 3267 2.202676 CGGCTTCGAGGTCTCTGC 60.203 66.667 0.00 0.00 35.61 4.26
3105 3292 4.933064 CTCGGCGTCGATCAGGGC 62.933 72.222 14.65 0.00 45.04 5.19
3190 3406 1.480137 GTACATGCTCCTGCTCAGTCT 59.520 52.381 0.00 0.00 40.48 3.24
3191 3407 1.800655 CGTACATGCTCCTGCTCAGTC 60.801 57.143 0.00 0.00 40.48 3.51
3192 3408 0.174389 CGTACATGCTCCTGCTCAGT 59.826 55.000 0.00 0.00 40.48 3.41
3193 3409 0.174389 ACGTACATGCTCCTGCTCAG 59.826 55.000 0.00 0.00 40.48 3.35
3229 3445 0.528470 CGACCCACAGAGAACTCTCC 59.472 60.000 3.04 0.00 43.88 3.71
3237 3453 0.962489 AGTCAACTCGACCCACAGAG 59.038 55.000 0.00 0.00 46.69 3.35
3295 3513 1.656818 GCACATTCCCATCACCGTGG 61.657 60.000 0.00 0.00 39.05 4.94
3348 3570 5.012561 GGAGTATTAGTCTACGGAGGGAGTA 59.987 48.000 0.00 0.00 0.00 2.59
3349 3571 4.202451 GGAGTATTAGTCTACGGAGGGAGT 60.202 50.000 0.00 0.00 0.00 3.85
3350 3572 4.202440 TGGAGTATTAGTCTACGGAGGGAG 60.202 50.000 0.00 0.00 0.00 4.30
3351 3573 3.718434 TGGAGTATTAGTCTACGGAGGGA 59.282 47.826 0.00 0.00 0.00 4.20
3352 3574 4.096190 TGGAGTATTAGTCTACGGAGGG 57.904 50.000 0.00 0.00 0.00 4.30
3353 3575 4.701171 GGATGGAGTATTAGTCTACGGAGG 59.299 50.000 0.00 0.00 0.00 4.30
3356 3578 4.070716 ACGGATGGAGTATTAGTCTACGG 58.929 47.826 0.00 0.00 0.00 4.02
3357 3579 5.334724 GGAACGGATGGAGTATTAGTCTACG 60.335 48.000 0.00 0.00 0.00 3.51
3359 3581 5.950023 AGGAACGGATGGAGTATTAGTCTA 58.050 41.667 0.00 0.00 0.00 2.59
3360 3582 4.805744 AGGAACGGATGGAGTATTAGTCT 58.194 43.478 0.00 0.00 0.00 3.24
3361 3583 6.645790 TTAGGAACGGATGGAGTATTAGTC 57.354 41.667 0.00 0.00 0.00 2.59
3362 3584 7.418712 CCTTTTAGGAACGGATGGAGTATTAGT 60.419 40.741 0.00 0.00 37.67 2.24
3363 3585 6.929606 CCTTTTAGGAACGGATGGAGTATTAG 59.070 42.308 0.00 0.00 37.67 1.73
3364 3586 6.384886 ACCTTTTAGGAACGGATGGAGTATTA 59.615 38.462 0.00 0.00 37.67 0.98
3365 3587 5.191124 ACCTTTTAGGAACGGATGGAGTATT 59.809 40.000 0.00 0.00 37.67 1.89
3366 3588 4.720273 ACCTTTTAGGAACGGATGGAGTAT 59.280 41.667 0.00 0.00 37.67 2.12
3367 3589 4.098894 ACCTTTTAGGAACGGATGGAGTA 58.901 43.478 0.00 0.00 37.67 2.59
3368 3590 2.910977 ACCTTTTAGGAACGGATGGAGT 59.089 45.455 0.00 0.00 37.67 3.85
3369 3591 3.629142 ACCTTTTAGGAACGGATGGAG 57.371 47.619 0.00 0.00 37.67 3.86
3370 3592 4.202482 TGAAACCTTTTAGGAACGGATGGA 60.202 41.667 0.00 0.00 37.67 3.41
3371 3593 4.076394 TGAAACCTTTTAGGAACGGATGG 58.924 43.478 0.00 0.00 37.67 3.51
3372 3594 5.699097 TTGAAACCTTTTAGGAACGGATG 57.301 39.130 0.00 0.00 37.67 3.51
3373 3595 6.492087 TCATTTGAAACCTTTTAGGAACGGAT 59.508 34.615 0.00 0.00 37.67 4.18
3374 3596 5.828859 TCATTTGAAACCTTTTAGGAACGGA 59.171 36.000 0.00 0.00 37.67 4.69
3375 3597 6.079424 TCATTTGAAACCTTTTAGGAACGG 57.921 37.500 0.00 0.00 37.67 4.44
3376 3598 9.124807 GTAATCATTTGAAACCTTTTAGGAACG 57.875 33.333 0.00 0.00 37.67 3.95
3377 3599 9.419297 GGTAATCATTTGAAACCTTTTAGGAAC 57.581 33.333 0.00 0.00 37.67 3.62
3378 3600 9.148879 TGGTAATCATTTGAAACCTTTTAGGAA 57.851 29.630 13.49 0.00 37.67 3.36
3379 3601 8.581578 GTGGTAATCATTTGAAACCTTTTAGGA 58.418 33.333 13.49 0.00 37.67 2.94
3380 3602 8.364142 TGTGGTAATCATTTGAAACCTTTTAGG 58.636 33.333 13.49 0.00 42.49 2.69
3381 3603 9.927668 ATGTGGTAATCATTTGAAACCTTTTAG 57.072 29.630 13.49 0.00 36.02 1.85
3383 3605 9.705290 GTATGTGGTAATCATTTGAAACCTTTT 57.295 29.630 13.49 4.62 36.02 2.27
3384 3606 8.865090 TGTATGTGGTAATCATTTGAAACCTTT 58.135 29.630 13.49 4.86 36.02 3.11
3385 3607 8.415950 TGTATGTGGTAATCATTTGAAACCTT 57.584 30.769 13.49 5.10 36.02 3.50
3386 3608 7.888021 TCTGTATGTGGTAATCATTTGAAACCT 59.112 33.333 13.49 1.38 36.02 3.50
3387 3609 8.050778 TCTGTATGTGGTAATCATTTGAAACC 57.949 34.615 7.98 7.98 35.75 3.27
3388 3610 9.507280 CATCTGTATGTGGTAATCATTTGAAAC 57.493 33.333 0.00 0.00 0.00 2.78
3389 3611 9.241919 ACATCTGTATGTGGTAATCATTTGAAA 57.758 29.630 0.00 0.00 44.79 2.69
3390 3612 8.806429 ACATCTGTATGTGGTAATCATTTGAA 57.194 30.769 0.00 0.00 44.79 2.69
3434 3656 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
3435 3657 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
3436 3658 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
3437 3659 7.822334 ACATACGGAACAAAATGAGTGAATCTA 59.178 33.333 0.00 0.00 0.00 1.98
3438 3660 6.655003 ACATACGGAACAAAATGAGTGAATCT 59.345 34.615 0.00 0.00 0.00 2.40
3439 3661 6.842163 ACATACGGAACAAAATGAGTGAATC 58.158 36.000 0.00 0.00 0.00 2.52
3440 3662 6.817765 ACATACGGAACAAAATGAGTGAAT 57.182 33.333 0.00 0.00 0.00 2.57
3441 3663 6.932400 ACTACATACGGAACAAAATGAGTGAA 59.068 34.615 0.00 0.00 0.00 3.18
3442 3664 6.460781 ACTACATACGGAACAAAATGAGTGA 58.539 36.000 0.00 0.00 0.00 3.41
3443 3665 6.367695 TGACTACATACGGAACAAAATGAGTG 59.632 38.462 0.00 0.00 0.00 3.51
3444 3666 6.367969 GTGACTACATACGGAACAAAATGAGT 59.632 38.462 0.00 0.00 0.00 3.41
3445 3667 6.590292 AGTGACTACATACGGAACAAAATGAG 59.410 38.462 0.00 0.00 0.00 2.90
3446 3668 6.460781 AGTGACTACATACGGAACAAAATGA 58.539 36.000 0.00 0.00 0.00 2.57
3447 3669 6.721571 AGTGACTACATACGGAACAAAATG 57.278 37.500 0.00 0.00 0.00 2.32
3448 3670 6.708949 ACAAGTGACTACATACGGAACAAAAT 59.291 34.615 0.00 0.00 0.00 1.82
3449 3671 6.050432 ACAAGTGACTACATACGGAACAAAA 58.950 36.000 0.00 0.00 0.00 2.44
3450 3672 5.603596 ACAAGTGACTACATACGGAACAAA 58.396 37.500 0.00 0.00 0.00 2.83
3451 3673 5.204409 ACAAGTGACTACATACGGAACAA 57.796 39.130 0.00 0.00 0.00 2.83
3452 3674 4.859304 ACAAGTGACTACATACGGAACA 57.141 40.909 0.00 0.00 0.00 3.18
3453 3675 5.224888 TCAACAAGTGACTACATACGGAAC 58.775 41.667 0.00 0.00 0.00 3.62
3454 3676 5.456548 TCAACAAGTGACTACATACGGAA 57.543 39.130 0.00 0.00 0.00 4.30
3455 3677 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3456 3678 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
3457 3679 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
3458 3680 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
3460 3682 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
3461 3683 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
3462 3684 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
3463 3685 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
3464 3686 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
3465 3687 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
3466 3688 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3467 3689 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3468 3690 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3469 3691 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
3470 3692 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
3481 3703 9.635520 CCGTTTCTAAATACTTGTCTTTCTAGA 57.364 33.333 0.00 0.00 0.00 2.43
3482 3704 9.635520 TCCGTTTCTAAATACTTGTCTTTCTAG 57.364 33.333 0.00 0.00 0.00 2.43
3483 3705 9.635520 CTCCGTTTCTAAATACTTGTCTTTCTA 57.364 33.333 0.00 0.00 0.00 2.10
3484 3706 7.603024 CCTCCGTTTCTAAATACTTGTCTTTCT 59.397 37.037 0.00 0.00 0.00 2.52
3485 3707 7.148457 CCCTCCGTTTCTAAATACTTGTCTTTC 60.148 40.741 0.00 0.00 0.00 2.62
3486 3708 6.653740 CCCTCCGTTTCTAAATACTTGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
3487 3709 6.013984 TCCCTCCGTTTCTAAATACTTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
3488 3710 5.482878 TCCCTCCGTTTCTAAATACTTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
3489 3711 5.727434 TCCCTCCGTTTCTAAATACTTGTC 58.273 41.667 0.00 0.00 0.00 3.18
3490 3712 5.247792 ACTCCCTCCGTTTCTAAATACTTGT 59.752 40.000 0.00 0.00 0.00 3.16
3491 3713 5.731591 ACTCCCTCCGTTTCTAAATACTTG 58.268 41.667 0.00 0.00 0.00 3.16
3492 3714 7.672122 ATACTCCCTCCGTTTCTAAATACTT 57.328 36.000 0.00 0.00 0.00 2.24
3493 3715 8.773033 TTATACTCCCTCCGTTTCTAAATACT 57.227 34.615 0.00 0.00 0.00 2.12
3494 3716 8.854117 TCTTATACTCCCTCCGTTTCTAAATAC 58.146 37.037 0.00 0.00 0.00 1.89
3495 3717 9.075678 CTCTTATACTCCCTCCGTTTCTAAATA 57.924 37.037 0.00 0.00 0.00 1.40
3496 3718 7.564292 ACTCTTATACTCCCTCCGTTTCTAAAT 59.436 37.037 0.00 0.00 0.00 1.40
3497 3719 6.894103 ACTCTTATACTCCCTCCGTTTCTAAA 59.106 38.462 0.00 0.00 0.00 1.85
3498 3720 6.320672 CACTCTTATACTCCCTCCGTTTCTAA 59.679 42.308 0.00 0.00 0.00 2.10
3499 3721 5.826737 CACTCTTATACTCCCTCCGTTTCTA 59.173 44.000 0.00 0.00 0.00 2.10
3500 3722 4.645588 CACTCTTATACTCCCTCCGTTTCT 59.354 45.833 0.00 0.00 0.00 2.52
3501 3723 4.401837 ACACTCTTATACTCCCTCCGTTTC 59.598 45.833 0.00 0.00 0.00 2.78
3502 3724 4.351127 ACACTCTTATACTCCCTCCGTTT 58.649 43.478 0.00 0.00 0.00 3.60
3503 3725 3.978610 ACACTCTTATACTCCCTCCGTT 58.021 45.455 0.00 0.00 0.00 4.44
3504 3726 3.666345 ACACTCTTATACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
3505 3727 6.651975 ATAAACACTCTTATACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
3506 3728 9.310449 TGATATAAACACTCTTATACTCCCTCC 57.690 37.037 0.00 0.00 0.00 4.30
3508 3730 9.884814 AGTGATATAAACACTCTTATACTCCCT 57.115 33.333 9.25 0.00 43.84 4.20
3560 3782 9.151177 TCCTACGTATTCCCTCTGTAAATTAAT 57.849 33.333 0.00 0.00 0.00 1.40
3561 3783 8.416329 GTCCTACGTATTCCCTCTGTAAATTAA 58.584 37.037 0.00 0.00 0.00 1.40
3562 3784 7.014615 GGTCCTACGTATTCCCTCTGTAAATTA 59.985 40.741 0.00 0.00 0.00 1.40
3563 3785 6.183360 GGTCCTACGTATTCCCTCTGTAAATT 60.183 42.308 0.00 0.00 0.00 1.82
3564 3786 5.303845 GGTCCTACGTATTCCCTCTGTAAAT 59.696 44.000 0.00 0.00 0.00 1.40
3565 3787 4.646492 GGTCCTACGTATTCCCTCTGTAAA 59.354 45.833 0.00 0.00 0.00 2.01
3566 3788 4.079558 AGGTCCTACGTATTCCCTCTGTAA 60.080 45.833 0.00 0.00 0.00 2.41
3567 3789 3.461085 AGGTCCTACGTATTCCCTCTGTA 59.539 47.826 0.00 0.00 0.00 2.74
3568 3790 2.244252 AGGTCCTACGTATTCCCTCTGT 59.756 50.000 0.00 0.00 0.00 3.41
3569 3791 2.946785 AGGTCCTACGTATTCCCTCTG 58.053 52.381 0.00 0.00 0.00 3.35
3570 3792 3.074242 CCTAGGTCCTACGTATTCCCTCT 59.926 52.174 0.00 1.05 0.00 3.69
3571 3793 3.073650 TCCTAGGTCCTACGTATTCCCTC 59.926 52.174 9.08 0.00 0.00 4.30
3572 3794 3.059097 TCCTAGGTCCTACGTATTCCCT 58.941 50.000 9.08 4.09 0.00 4.20
3573 3795 3.073650 TCTCCTAGGTCCTACGTATTCCC 59.926 52.174 9.08 0.00 0.00 3.97
3574 3796 4.041444 TCTCTCCTAGGTCCTACGTATTCC 59.959 50.000 9.08 0.00 0.00 3.01
3575 3797 5.226194 TCTCTCCTAGGTCCTACGTATTC 57.774 47.826 9.08 0.00 0.00 1.75
3576 3798 5.562635 CATCTCTCCTAGGTCCTACGTATT 58.437 45.833 9.08 0.00 0.00 1.89
3577 3799 4.566070 GCATCTCTCCTAGGTCCTACGTAT 60.566 50.000 9.08 0.00 0.00 3.06
3578 3800 3.244491 GCATCTCTCCTAGGTCCTACGTA 60.244 52.174 9.08 0.00 0.00 3.57
3579 3801 2.487625 GCATCTCTCCTAGGTCCTACGT 60.488 54.545 9.08 0.00 0.00 3.57
3580 3802 2.156098 GCATCTCTCCTAGGTCCTACG 58.844 57.143 9.08 0.00 0.00 3.51
3581 3803 3.153919 CAGCATCTCTCCTAGGTCCTAC 58.846 54.545 9.08 0.00 0.00 3.18
3582 3804 2.786445 ACAGCATCTCTCCTAGGTCCTA 59.214 50.000 9.08 0.00 0.00 2.94
3583 3805 1.573376 ACAGCATCTCTCCTAGGTCCT 59.427 52.381 9.08 0.00 0.00 3.85
3584 3806 2.080654 ACAGCATCTCTCCTAGGTCC 57.919 55.000 9.08 0.00 0.00 4.46
3585 3807 4.211920 AGTAACAGCATCTCTCCTAGGTC 58.788 47.826 9.08 0.00 0.00 3.85
3586 3808 4.258457 AGTAACAGCATCTCTCCTAGGT 57.742 45.455 9.08 0.00 0.00 3.08
3587 3809 6.295011 CCATAAGTAACAGCATCTCTCCTAGG 60.295 46.154 0.82 0.82 0.00 3.02
3588 3810 6.686630 CCATAAGTAACAGCATCTCTCCTAG 58.313 44.000 0.00 0.00 0.00 3.02
3616 3841 3.486108 CGTATCACATCTCACGGTTAAGC 59.514 47.826 0.00 0.00 0.00 3.09
3617 3842 4.042398 CCGTATCACATCTCACGGTTAAG 58.958 47.826 3.92 0.00 46.81 1.85
3618 3843 4.036567 CCGTATCACATCTCACGGTTAA 57.963 45.455 3.92 0.00 46.81 2.01
3619 3844 3.703286 CCGTATCACATCTCACGGTTA 57.297 47.619 3.92 0.00 46.81 2.85
3712 4048 0.179070 GCAAAGGGTTCCCGCAAAAA 60.179 50.000 1.91 0.00 0.00 1.94
3713 4049 1.443828 GCAAAGGGTTCCCGCAAAA 59.556 52.632 1.91 0.00 0.00 2.44
3714 4050 2.851071 CGCAAAGGGTTCCCGCAAA 61.851 57.895 1.91 0.00 0.00 3.68
3715 4051 3.291383 CGCAAAGGGTTCCCGCAA 61.291 61.111 1.91 0.00 0.00 4.85
3716 4052 3.776347 TTCGCAAAGGGTTCCCGCA 62.776 57.895 1.91 0.00 0.00 5.69
3717 4053 2.978018 CTTCGCAAAGGGTTCCCGC 61.978 63.158 1.91 0.00 0.00 6.13
3718 4054 2.978018 GCTTCGCAAAGGGTTCCCG 61.978 63.158 1.91 0.00 32.79 5.14
3719 4055 1.250840 ATGCTTCGCAAAGGGTTCCC 61.251 55.000 0.00 0.00 43.62 3.97
3720 4056 0.109132 CATGCTTCGCAAAGGGTTCC 60.109 55.000 0.00 0.00 43.62 3.62
3721 4057 0.598065 ACATGCTTCGCAAAGGGTTC 59.402 50.000 0.00 0.00 43.62 3.62
3722 4058 0.598065 GACATGCTTCGCAAAGGGTT 59.402 50.000 0.00 0.00 43.62 4.11
3723 4059 0.537143 TGACATGCTTCGCAAAGGGT 60.537 50.000 0.00 0.00 43.62 4.34
3724 4060 0.597568 TTGACATGCTTCGCAAAGGG 59.402 50.000 0.00 0.00 43.62 3.95
3725 4061 2.642139 ATTGACATGCTTCGCAAAGG 57.358 45.000 0.00 0.00 43.62 3.11
3726 4062 4.665212 ACATATTGACATGCTTCGCAAAG 58.335 39.130 0.00 0.00 43.62 2.77
3727 4063 4.155644 TGACATATTGACATGCTTCGCAAA 59.844 37.500 0.00 0.00 43.62 3.68
3728 4064 3.688673 TGACATATTGACATGCTTCGCAA 59.311 39.130 0.00 0.00 43.62 4.85
3729 4065 3.063861 GTGACATATTGACATGCTTCGCA 59.936 43.478 0.00 0.00 44.86 5.10
3730 4066 3.611517 GTGACATATTGACATGCTTCGC 58.388 45.455 0.00 0.00 0.00 4.70
3731 4067 3.842439 GCGTGACATATTGACATGCTTCG 60.842 47.826 14.09 1.39 46.28 3.79
3732 4068 3.611517 GCGTGACATATTGACATGCTTC 58.388 45.455 14.09 0.00 46.28 3.86
3733 4069 3.680642 GCGTGACATATTGACATGCTT 57.319 42.857 14.09 0.00 46.28 3.91
3736 4072 2.032054 GTGGGCGTGACATATTGACATG 59.968 50.000 0.00 0.00 33.37 3.21
3737 4073 2.288666 GTGGGCGTGACATATTGACAT 58.711 47.619 0.00 0.00 0.00 3.06
3738 4074 1.677518 GGTGGGCGTGACATATTGACA 60.678 52.381 0.00 0.00 0.00 3.58
3739 4075 1.014352 GGTGGGCGTGACATATTGAC 58.986 55.000 0.00 0.00 0.00 3.18
3740 4076 0.908910 AGGTGGGCGTGACATATTGA 59.091 50.000 0.00 0.00 0.00 2.57
3741 4077 1.750193 AAGGTGGGCGTGACATATTG 58.250 50.000 0.00 0.00 0.00 1.90
3742 4078 2.507407 AAAGGTGGGCGTGACATATT 57.493 45.000 0.00 0.00 0.00 1.28
3743 4079 2.365582 GAAAAGGTGGGCGTGACATAT 58.634 47.619 0.00 0.00 0.00 1.78
3752 4088 1.378119 CGTAGGGGAAAAGGTGGGC 60.378 63.158 0.00 0.00 0.00 5.36
3796 4132 9.974980 ATTGTGTTTCCAGATTAAATTTAACGT 57.025 25.926 12.74 0.00 0.00 3.99
3859 4195 7.706607 TGCATGACTACTTACATCACATACTTC 59.293 37.037 0.00 0.00 0.00 3.01
3898 4234 7.075851 AGATGTCCATATGATGTTCATCTGT 57.924 36.000 17.93 5.71 41.97 3.41
3917 4253 8.295288 CGGTCTACTATTTTTATCCGTAGATGT 58.705 37.037 0.00 0.00 38.84 3.06
3924 4260 3.992427 GCCCGGTCTACTATTTTTATCCG 59.008 47.826 0.00 0.00 37.04 4.18
3948 4284 1.546476 ACTCTCTTCTGTTAGGCACCG 59.454 52.381 0.00 0.00 0.00 4.94
3949 4285 3.510360 TGTACTCTCTTCTGTTAGGCACC 59.490 47.826 0.00 0.00 0.00 5.01
3959 4295 6.349777 GCACTGTATGTCTTGTACTCTCTTCT 60.350 42.308 0.00 0.00 0.00 2.85
3964 4300 3.119459 CCGCACTGTATGTCTTGTACTCT 60.119 47.826 0.00 0.00 0.00 3.24
3968 4304 2.559231 TCACCGCACTGTATGTCTTGTA 59.441 45.455 0.00 0.00 0.00 2.41
3970 4306 2.078849 TCACCGCACTGTATGTCTTG 57.921 50.000 0.00 0.00 0.00 3.02
3978 4314 2.146342 CATCTTCTTTCACCGCACTGT 58.854 47.619 0.00 0.00 0.00 3.55
3981 4317 0.874390 TGCATCTTCTTTCACCGCAC 59.126 50.000 0.00 0.00 0.00 5.34
3987 4323 4.036734 GGACAACACTTGCATCTTCTTTCA 59.963 41.667 0.00 0.00 0.00 2.69
4033 4370 1.067846 TCCTCCTTGACATGACGAACG 60.068 52.381 0.00 0.00 0.00 3.95
4047 4384 2.240667 CCAACATTGATCACCTCCTCCT 59.759 50.000 0.00 0.00 0.00 3.69
4049 4386 2.648059 CCCAACATTGATCACCTCCTC 58.352 52.381 0.00 0.00 0.00 3.71
4051 4388 1.284785 TCCCCAACATTGATCACCTCC 59.715 52.381 0.00 0.00 0.00 4.30
4064 4401 0.033090 ACGACGACTTCTTCCCCAAC 59.967 55.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.