Multiple sequence alignment - TraesCS3D01G159100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G159100 chr3D 100.000 4322 0 0 1 4322 128540158 128544479 0.000000e+00 7982
1 TraesCS3D01G159100 chr3D 84.375 160 25 0 3730 3889 7327632 7327791 1.610000e-34 158
2 TraesCS3D01G159100 chr3A 93.556 3026 129 25 691 3686 140040686 140043675 0.000000e+00 4447
3 TraesCS3D01G159100 chr3A 91.496 341 15 7 3987 4322 140049993 140050324 1.420000e-124 457
4 TraesCS3D01G159100 chr3A 79.381 291 57 3 3 291 566334826 566334537 7.330000e-48 202
5 TraesCS3D01G159100 chr3B 95.344 2019 71 13 1663 3677 182380447 182382446 0.000000e+00 3186
6 TraesCS3D01G159100 chr3B 94.130 988 52 4 679 1663 182379425 182380409 0.000000e+00 1498
7 TraesCS3D01G159100 chr3B 88.261 690 58 12 1 686 182378636 182379306 0.000000e+00 804
8 TraesCS3D01G159100 chr3B 86.792 318 16 11 4007 4322 182382577 182382870 8.960000e-87 331
9 TraesCS3D01G159100 chr3B 79.675 246 46 4 10 254 766610611 766610853 1.600000e-39 174
10 TraesCS3D01G159100 chr3B 87.903 124 5 3 3901 4024 182382448 182382561 2.100000e-28 137
11 TraesCS3D01G159100 chr5B 93.458 214 13 1 3685 3897 639783390 639783603 2.510000e-82 316
12 TraesCS3D01G159100 chr5B 85.185 108 16 0 205 312 123024573 123024466 1.270000e-20 111
13 TraesCS3D01G159100 chr2A 93.056 216 15 0 3685 3900 695339063 695338848 2.510000e-82 316
14 TraesCS3D01G159100 chr2A 75.073 341 59 11 210 548 449227627 449227943 7.540000e-28 135
15 TraesCS3D01G159100 chr1B 75.523 621 105 26 8 611 111921925 111922515 1.190000e-65 261
16 TraesCS3D01G159100 chr1B 77.740 292 60 4 27 317 619664947 619664660 1.600000e-39 174
17 TraesCS3D01G159100 chr1B 79.661 177 35 1 3717 3893 416639497 416639672 4.540000e-25 126
18 TraesCS3D01G159100 chr2B 81.467 259 39 9 1 255 425145176 425145429 2.040000e-48 204
19 TraesCS3D01G159100 chr5D 80.567 247 39 6 11 255 318867360 318867599 9.550000e-42 182
20 TraesCS3D01G159100 chr6B 79.920 249 38 10 1 247 66795226 66794988 5.750000e-39 172
21 TraesCS3D01G159100 chr7D 76.842 285 60 3 22 305 171643010 171642731 5.790000e-34 156
22 TraesCS3D01G159100 chr4B 82.927 164 28 0 3732 3895 587006999 587007162 9.680000e-32 148
23 TraesCS3D01G159100 chr1A 80.541 185 36 0 3711 3895 392458818 392459002 4.510000e-30 143
24 TraesCS3D01G159100 chr2D 80.000 170 30 4 3735 3902 111164839 111164672 5.870000e-24 122
25 TraesCS3D01G159100 chr6D 79.006 181 34 4 3717 3895 266395923 266396101 2.110000e-23 121
26 TraesCS3D01G159100 chr4D 72.748 444 85 26 112 549 4034354 4033941 2.730000e-22 117
27 TraesCS3D01G159100 chr1D 78.142 183 39 1 3711 3893 312658616 312658797 9.820000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G159100 chr3D 128540158 128544479 4321 False 7982.0 7982 100.000 1 4322 1 chr3D.!!$F2 4321
1 TraesCS3D01G159100 chr3A 140040686 140043675 2989 False 4447.0 4447 93.556 691 3686 1 chr3A.!!$F1 2995
2 TraesCS3D01G159100 chr3B 182378636 182382870 4234 False 1191.2 3186 90.486 1 4322 5 chr3B.!!$F2 4321
3 TraesCS3D01G159100 chr1B 111921925 111922515 590 False 261.0 261 75.523 8 611 1 chr1B.!!$F1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 290 0.596600 TCGACACTTGTCTTCGGTGC 60.597 55.0 7.74 0.00 42.66 5.01 F
1377 1536 0.110147 GCGTAGATCGGATCGGAGTG 60.110 60.0 12.08 3.91 40.26 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2246 1.269621 ACGACTAATGGCGCATAGGTC 60.270 52.381 10.83 9.53 0.0 3.85 R
3344 3551 1.044611 TCGCCATCATTCCATACCGA 58.955 50.000 0.00 0.00 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.596934 GTGGATCTCGGTCCTTGCA 59.403 57.895 0.00 0.00 39.12 4.08
99 101 7.093771 GGAAGGGCTTCATTTTCTTTTCAGATA 60.094 37.037 0.00 0.00 41.20 1.98
132 134 4.202111 GCTTGTTTAGGGTTTGTGTCATGT 60.202 41.667 0.00 0.00 0.00 3.21
185 187 2.174639 AGATGGAATAATGTTCGCCCCA 59.825 45.455 0.00 0.00 0.00 4.96
274 277 1.070175 CACGTGGGATTTTGTCGACAC 60.070 52.381 19.90 6.54 34.16 3.67
287 290 0.596600 TCGACACTTGTCTTCGGTGC 60.597 55.000 7.74 0.00 42.66 5.01
291 294 1.070758 ACACTTGTCTTCGGTGCATCT 59.929 47.619 0.00 0.00 34.70 2.90
301 304 1.442526 CGGTGCATCTGCTTGGATCC 61.443 60.000 4.20 4.20 42.66 3.36
303 306 1.022735 GTGCATCTGCTTGGATCCAG 58.977 55.000 15.53 10.43 42.66 3.86
304 307 0.622136 TGCATCTGCTTGGATCCAGT 59.378 50.000 15.53 0.00 42.66 4.00
305 308 1.307097 GCATCTGCTTGGATCCAGTC 58.693 55.000 15.53 11.16 38.21 3.51
307 310 2.683152 GCATCTGCTTGGATCCAGTCTT 60.683 50.000 15.53 0.00 38.21 3.01
308 311 3.618351 CATCTGCTTGGATCCAGTCTTT 58.382 45.455 15.53 0.00 0.00 2.52
309 312 3.063510 TCTGCTTGGATCCAGTCTTTG 57.936 47.619 15.53 5.02 0.00 2.77
311 314 3.152341 CTGCTTGGATCCAGTCTTTGTT 58.848 45.455 15.53 0.00 0.00 2.83
312 315 3.149196 TGCTTGGATCCAGTCTTTGTTC 58.851 45.455 15.53 0.00 0.00 3.18
313 316 2.160417 GCTTGGATCCAGTCTTTGTTCG 59.840 50.000 15.53 0.00 0.00 3.95
314 317 1.808411 TGGATCCAGTCTTTGTTCGC 58.192 50.000 11.44 0.00 0.00 4.70
315 318 1.087501 GGATCCAGTCTTTGTTCGCC 58.912 55.000 6.95 0.00 0.00 5.54
316 319 1.339151 GGATCCAGTCTTTGTTCGCCT 60.339 52.381 6.95 0.00 0.00 5.52
317 320 1.734465 GATCCAGTCTTTGTTCGCCTG 59.266 52.381 0.00 0.00 0.00 4.85
332 335 1.576421 CCTGCAGTCTTTGTTCGCC 59.424 57.895 13.81 0.00 0.00 5.54
393 396 4.336889 ACTTCTCTTCATCAACGGACAA 57.663 40.909 0.00 0.00 0.00 3.18
394 397 4.899502 ACTTCTCTTCATCAACGGACAAT 58.100 39.130 0.00 0.00 0.00 2.71
431 434 2.263741 GCATTGGCCCTATGGAGCG 61.264 63.158 14.71 0.00 0.00 5.03
458 461 2.800544 ACAACGACTTTCGGATTGTCTG 59.199 45.455 0.03 4.84 45.59 3.51
480 486 3.366374 GCTACAACAAGATTTGCACCTCC 60.366 47.826 0.00 0.00 0.00 4.30
551 559 5.353400 TGATTGTAGTCGTCACTAGGTGTAG 59.647 44.000 0.00 0.00 35.67 2.74
568 577 7.268199 AGGTGTAGTTTTTACTTTTAGTGCC 57.732 36.000 0.00 0.00 0.00 5.01
585 594 3.702045 AGTGCCCTCTGTACTATCTTGAC 59.298 47.826 0.00 0.00 38.23 3.18
586 595 3.447586 GTGCCCTCTGTACTATCTTGACA 59.552 47.826 0.00 0.00 0.00 3.58
620 629 7.875316 TGATCGAAAGTTTTCAAGAGTAGAG 57.125 36.000 5.55 0.00 37.01 2.43
661 670 1.832883 TCCCAAAATCCATGTCCACG 58.167 50.000 0.00 0.00 0.00 4.94
686 695 4.228824 TCACCAAACCTACTGGAGTACTT 58.771 43.478 0.00 0.00 37.40 2.24
687 696 4.039973 TCACCAAACCTACTGGAGTACTTG 59.960 45.833 0.00 0.00 37.40 3.16
803 946 2.283676 GTCCACCCCGAGTCCTCA 60.284 66.667 0.00 0.00 0.00 3.86
867 1010 4.291783 CGATCTTCCGATCAGACCTAAAC 58.708 47.826 0.00 0.00 45.11 2.01
897 1041 1.910671 TCTATAAAACCCCACCACGCT 59.089 47.619 0.00 0.00 0.00 5.07
999 1146 1.351350 AGGGTTTCGGAAAGCTAAGCT 59.649 47.619 26.16 15.16 42.56 3.74
1375 1534 1.132844 CGCGTAGATCGGATCGGAG 59.867 63.158 12.08 8.42 40.26 4.63
1377 1536 0.110147 GCGTAGATCGGATCGGAGTG 60.110 60.000 12.08 3.91 40.26 3.51
1378 1537 0.517755 CGTAGATCGGATCGGAGTGG 59.482 60.000 12.08 0.00 35.71 4.00
1394 1553 4.176752 GGGTGGATCTGGACGGGC 62.177 72.222 0.00 0.00 0.00 6.13
1399 1558 2.367202 GGATCTGGACGGGCTTGGA 61.367 63.158 0.00 0.00 0.00 3.53
1400 1559 1.153349 GATCTGGACGGGCTTGGAC 60.153 63.158 0.00 0.00 0.00 4.02
1442 1601 2.230660 GGTATAAGGCACTGATTGGGC 58.769 52.381 0.00 0.00 46.31 5.36
1467 1626 2.437413 CAGGTGAGGTTTAAGCCTTCC 58.563 52.381 12.62 16.43 39.34 3.46
1503 1664 2.162681 GTTTGTTCAGATCCACAGGGG 58.837 52.381 0.00 0.00 38.37 4.79
1571 1732 2.621055 TGGTGGTTTCGAATTTGGTCAG 59.379 45.455 0.00 0.00 0.00 3.51
1584 1745 0.250038 TGGTCAGTGCAAGCTGTCTC 60.250 55.000 4.42 0.00 37.70 3.36
1586 1747 0.250038 GTCAGTGCAAGCTGTCTCCA 60.250 55.000 4.42 0.00 37.70 3.86
1658 1822 7.920682 CCTTGTATTTATGGTGCTAAAATGGAC 59.079 37.037 0.00 0.00 0.00 4.02
1692 1894 4.079787 TGTCTGGGCTGCTAAAATAGGATT 60.080 41.667 0.00 0.00 0.00 3.01
1716 1918 4.408904 AATATTCCATATGGCTGGGCTT 57.591 40.909 17.58 2.97 36.89 4.35
1771 1973 2.210116 AGTATTACCCGCGCTTGAATG 58.790 47.619 5.56 0.00 0.00 2.67
1837 2039 0.250467 TTCTCTGCTGTGTCCTTGCC 60.250 55.000 0.00 0.00 0.00 4.52
1962 2164 5.185056 ACCTTGTGGTGTTATTGCTATTTCC 59.815 40.000 0.00 0.00 46.51 3.13
1982 2184 5.228945 TCCTCCCTTTCTCAAACTTACAG 57.771 43.478 0.00 0.00 0.00 2.74
1994 2196 8.463930 TCTCAAACTTACAGACATTTTGGAAT 57.536 30.769 0.00 0.00 0.00 3.01
2114 2316 9.239002 CTCATGGACTAAAGAAATAGAACTACG 57.761 37.037 0.00 0.00 0.00 3.51
2397 2601 8.501580 CCGTCTTGTATTATATCGTGACTAAGA 58.498 37.037 0.00 0.00 0.00 2.10
2430 2634 7.304735 TGTGAGCACATGTTATGTAATTTCAC 58.695 34.615 0.00 13.95 42.70 3.18
2676 2880 9.547753 TCATTAACAAGTAAGCTATCTTCATCC 57.452 33.333 0.00 0.00 33.85 3.51
2699 2903 4.209911 CCAGTATCACAGATTACATGTGCG 59.790 45.833 9.11 0.00 46.11 5.34
2726 2930 3.868757 TGCACGTTCAAGAGCTAGTAT 57.131 42.857 0.00 0.00 0.00 2.12
2773 2978 1.077005 CCATTTCAGGTCTCCCCCAAA 59.923 52.381 0.00 0.00 0.00 3.28
2828 3033 2.857748 TGTCAACATTGCGCTATCTACG 59.142 45.455 9.73 0.00 0.00 3.51
2960 3165 6.484288 TGTTCCTACATCAATCTGGATTTGT 58.516 36.000 6.10 6.10 0.00 2.83
2964 3169 5.464722 CCTACATCAATCTGGATTTGTCTCG 59.535 44.000 4.54 0.00 0.00 4.04
3080 3285 2.501723 TGGTAAGGGATCTCAACTGAGC 59.498 50.000 0.00 0.00 41.80 4.26
3180 3387 0.465460 TGGTTCTGCACACAGTTCCC 60.465 55.000 0.00 0.00 44.77 3.97
3189 3396 3.196901 TGCACACAGTTCCCGTAATCTAT 59.803 43.478 0.00 0.00 0.00 1.98
3331 3538 6.039493 AGACAAGAAGAACTAGAAACGAGTGA 59.961 38.462 0.00 0.00 0.00 3.41
3341 3548 1.389106 GAAACGAGTGATACCGTGTGC 59.611 52.381 0.00 0.00 39.14 4.57
3342 3549 0.389426 AACGAGTGATACCGTGTGCC 60.389 55.000 0.00 0.00 39.14 5.01
3343 3550 1.214325 CGAGTGATACCGTGTGCCA 59.786 57.895 0.00 0.00 0.00 4.92
3344 3551 0.179111 CGAGTGATACCGTGTGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
3345 3552 1.571919 GAGTGATACCGTGTGCCATC 58.428 55.000 0.00 0.00 0.00 3.51
3346 3553 0.179111 AGTGATACCGTGTGCCATCG 60.179 55.000 0.00 0.00 0.00 3.84
3427 3634 4.574421 TCACCAGTTGTCTTGTGTTATGTG 59.426 41.667 0.00 0.00 38.16 3.21
3428 3635 4.335315 CACCAGTTGTCTTGTGTTATGTGT 59.665 41.667 0.00 0.00 34.11 3.72
3432 3639 6.481976 CCAGTTGTCTTGTGTTATGTGTAAGA 59.518 38.462 0.00 0.00 0.00 2.10
3586 3794 4.398247 GTTTCTAGACGCTGATTTTGCTG 58.602 43.478 0.00 0.00 0.00 4.41
3623 3831 7.092716 GCAGTTTGGAGTATTGATGATGTTTT 58.907 34.615 0.00 0.00 0.00 2.43
3652 3860 2.223340 CGTTGGGCTTTAGATGTCATGC 60.223 50.000 0.00 0.00 0.00 4.06
3653 3861 2.754552 GTTGGGCTTTAGATGTCATGCA 59.245 45.455 0.00 0.00 0.00 3.96
3654 3862 2.368439 TGGGCTTTAGATGTCATGCAC 58.632 47.619 0.00 0.00 0.00 4.57
3673 3881 5.404946 TGCACTACTCGTTTCTATTGTACC 58.595 41.667 0.00 0.00 0.00 3.34
3686 3894 9.865321 GTTTCTATTGTACCACTATCACTGTTA 57.135 33.333 0.00 0.00 0.00 2.41
3692 3900 9.817809 ATTGTACCACTATCACTGTTATTACTG 57.182 33.333 0.00 0.00 0.00 2.74
3693 3901 8.584063 TGTACCACTATCACTGTTATTACTGA 57.416 34.615 0.00 0.00 0.00 3.41
3694 3902 9.027202 TGTACCACTATCACTGTTATTACTGAA 57.973 33.333 0.00 0.00 0.00 3.02
3695 3903 9.865321 GTACCACTATCACTGTTATTACTGAAA 57.135 33.333 0.00 0.00 0.00 2.69
3697 3905 9.601217 ACCACTATCACTGTTATTACTGAAATC 57.399 33.333 0.00 0.00 0.00 2.17
3698 3906 9.599866 CCACTATCACTGTTATTACTGAAATCA 57.400 33.333 0.00 0.00 0.00 2.57
3706 3914 9.445786 ACTGTTATTACTGAAATCAAACAAACG 57.554 29.630 0.00 0.00 29.72 3.60
3707 3915 9.658475 CTGTTATTACTGAAATCAAACAAACGA 57.342 29.630 0.00 0.00 29.72 3.85
3724 3932 7.276953 ACAAACGATGTTAGCATTTAATTGC 57.723 32.000 13.25 13.25 40.06 3.56
3725 3933 7.090173 ACAAACGATGTTAGCATTTAATTGCT 58.910 30.769 23.90 23.90 43.39 3.91
3726 3934 7.598493 ACAAACGATGTTAGCATTTAATTGCTT 59.402 29.630 25.16 11.07 44.89 3.91
3737 3945 7.998081 GCATTTAATTGCTTGCTTACTTTTG 57.002 32.000 13.73 0.00 39.57 2.44
3738 3946 7.795859 GCATTTAATTGCTTGCTTACTTTTGA 58.204 30.769 13.73 0.00 39.57 2.69
3739 3947 8.281893 GCATTTAATTGCTTGCTTACTTTTGAA 58.718 29.630 13.73 0.00 39.57 2.69
3740 3948 9.801714 CATTTAATTGCTTGCTTACTTTTGAAG 57.198 29.630 0.00 0.00 0.00 3.02
3741 3949 7.945033 TTAATTGCTTGCTTACTTTTGAAGG 57.055 32.000 0.00 0.00 0.00 3.46
3742 3950 3.369546 TGCTTGCTTACTTTTGAAGGC 57.630 42.857 0.00 0.00 0.00 4.35
3743 3951 2.692557 TGCTTGCTTACTTTTGAAGGCA 59.307 40.909 0.00 0.00 0.00 4.75
3744 3952 3.243501 TGCTTGCTTACTTTTGAAGGCAG 60.244 43.478 0.00 0.00 0.00 4.85
3745 3953 3.004734 GCTTGCTTACTTTTGAAGGCAGA 59.995 43.478 0.00 0.00 0.00 4.26
3746 3954 4.791974 CTTGCTTACTTTTGAAGGCAGAG 58.208 43.478 0.00 0.00 0.00 3.35
3747 3955 2.554032 TGCTTACTTTTGAAGGCAGAGC 59.446 45.455 0.00 0.00 0.00 4.09
3748 3956 2.816672 GCTTACTTTTGAAGGCAGAGCT 59.183 45.455 0.00 0.00 0.00 4.09
3749 3957 4.003648 GCTTACTTTTGAAGGCAGAGCTA 58.996 43.478 0.00 0.00 0.00 3.32
3750 3958 4.142795 GCTTACTTTTGAAGGCAGAGCTAC 60.143 45.833 0.00 0.00 0.00 3.58
3751 3959 3.778954 ACTTTTGAAGGCAGAGCTACT 57.221 42.857 0.00 0.00 0.00 2.57
3752 3960 4.891992 ACTTTTGAAGGCAGAGCTACTA 57.108 40.909 0.00 0.00 0.00 1.82
3753 3961 5.228945 ACTTTTGAAGGCAGAGCTACTAA 57.771 39.130 0.00 0.00 0.00 2.24
3754 3962 5.810095 ACTTTTGAAGGCAGAGCTACTAAT 58.190 37.500 0.00 0.00 0.00 1.73
3755 3963 6.947464 ACTTTTGAAGGCAGAGCTACTAATA 58.053 36.000 0.00 0.00 0.00 0.98
3756 3964 7.044798 ACTTTTGAAGGCAGAGCTACTAATAG 58.955 38.462 0.00 0.00 0.00 1.73
3767 3975 4.143194 GCTACTAATAGCGATGTCGACA 57.857 45.455 22.48 22.48 44.36 4.35
3768 3976 4.152526 GCTACTAATAGCGATGTCGACAG 58.847 47.826 24.41 12.34 44.36 3.51
3769 3977 3.627732 ACTAATAGCGATGTCGACAGG 57.372 47.619 24.41 18.35 43.02 4.00
3770 3978 2.950309 ACTAATAGCGATGTCGACAGGT 59.050 45.455 24.41 18.18 43.02 4.00
3771 3979 2.961526 AATAGCGATGTCGACAGGTT 57.038 45.000 24.41 17.42 43.02 3.50
3772 3980 4.577693 ACTAATAGCGATGTCGACAGGTTA 59.422 41.667 24.41 18.90 43.02 2.85
3773 3981 3.627732 ATAGCGATGTCGACAGGTTAG 57.372 47.619 24.41 13.17 43.02 2.34
3774 3982 0.179134 AGCGATGTCGACAGGTTAGC 60.179 55.000 24.41 21.14 43.02 3.09
3775 3983 1.146358 GCGATGTCGACAGGTTAGCC 61.146 60.000 24.41 4.13 43.02 3.93
3776 3984 0.172578 CGATGTCGACAGGTTAGCCA 59.827 55.000 24.41 0.00 43.02 4.75
3777 3985 1.403647 CGATGTCGACAGGTTAGCCAA 60.404 52.381 24.41 0.00 43.02 4.52
3778 3986 2.271800 GATGTCGACAGGTTAGCCAAG 58.728 52.381 24.41 0.00 37.19 3.61
3779 3987 1.045407 TGTCGACAGGTTAGCCAAGT 58.955 50.000 15.76 0.00 37.19 3.16
3780 3988 1.414919 TGTCGACAGGTTAGCCAAGTT 59.585 47.619 15.76 0.00 37.19 2.66
3781 3989 2.158871 TGTCGACAGGTTAGCCAAGTTT 60.159 45.455 15.76 0.00 37.19 2.66
3782 3990 2.223377 GTCGACAGGTTAGCCAAGTTTG 59.777 50.000 11.55 0.00 37.19 2.93
3783 3991 1.069227 CGACAGGTTAGCCAAGTTTGC 60.069 52.381 0.00 0.00 37.19 3.68
3784 3992 2.230660 GACAGGTTAGCCAAGTTTGCT 58.769 47.619 6.69 6.69 42.81 3.91
3785 3993 2.226674 GACAGGTTAGCCAAGTTTGCTC 59.773 50.000 4.45 0.00 40.23 4.26
3786 3994 2.229792 CAGGTTAGCCAAGTTTGCTCA 58.770 47.619 4.45 0.00 40.23 4.26
3787 3995 2.821969 CAGGTTAGCCAAGTTTGCTCAT 59.178 45.455 4.45 0.00 40.23 2.90
3788 3996 3.256631 CAGGTTAGCCAAGTTTGCTCATT 59.743 43.478 4.45 0.00 40.23 2.57
3789 3997 3.507622 AGGTTAGCCAAGTTTGCTCATTC 59.492 43.478 4.45 0.00 40.23 2.67
3790 3998 3.255642 GGTTAGCCAAGTTTGCTCATTCA 59.744 43.478 4.45 0.00 40.23 2.57
3791 3999 4.229876 GTTAGCCAAGTTTGCTCATTCAC 58.770 43.478 4.45 0.00 40.23 3.18
3792 4000 2.590821 AGCCAAGTTTGCTCATTCACT 58.409 42.857 0.00 0.00 32.41 3.41
3793 4001 3.754965 AGCCAAGTTTGCTCATTCACTA 58.245 40.909 0.00 0.00 32.41 2.74
3794 4002 3.755378 AGCCAAGTTTGCTCATTCACTAG 59.245 43.478 0.00 0.00 32.41 2.57
3795 4003 3.753272 GCCAAGTTTGCTCATTCACTAGA 59.247 43.478 0.00 0.00 0.00 2.43
3796 4004 4.397417 GCCAAGTTTGCTCATTCACTAGAT 59.603 41.667 0.00 0.00 0.00 1.98
3797 4005 5.448360 GCCAAGTTTGCTCATTCACTAGATC 60.448 44.000 0.00 0.00 0.00 2.75
3798 4006 5.645067 CCAAGTTTGCTCATTCACTAGATCA 59.355 40.000 0.00 0.00 0.00 2.92
3799 4007 6.183360 CCAAGTTTGCTCATTCACTAGATCAG 60.183 42.308 0.00 0.00 0.00 2.90
3800 4008 5.426504 AGTTTGCTCATTCACTAGATCAGG 58.573 41.667 0.00 0.00 0.00 3.86
3801 4009 4.412796 TTGCTCATTCACTAGATCAGGG 57.587 45.455 0.00 0.00 0.00 4.45
3802 4010 3.378512 TGCTCATTCACTAGATCAGGGT 58.621 45.455 0.00 0.00 0.00 4.34
3803 4011 3.386078 TGCTCATTCACTAGATCAGGGTC 59.614 47.826 0.00 0.00 0.00 4.46
3804 4012 3.551863 GCTCATTCACTAGATCAGGGTCG 60.552 52.174 0.00 0.00 0.00 4.79
3805 4013 2.362397 TCATTCACTAGATCAGGGTCGC 59.638 50.000 0.00 0.00 0.00 5.19
3806 4014 1.112113 TTCACTAGATCAGGGTCGCC 58.888 55.000 0.00 0.00 0.00 5.54
3807 4015 0.033503 TCACTAGATCAGGGTCGCCA 60.034 55.000 0.00 0.00 0.00 5.69
3808 4016 0.103208 CACTAGATCAGGGTCGCCAC 59.897 60.000 0.00 0.00 0.00 5.01
3809 4017 0.324368 ACTAGATCAGGGTCGCCACA 60.324 55.000 0.00 0.00 0.00 4.17
3810 4018 1.043816 CTAGATCAGGGTCGCCACAT 58.956 55.000 0.00 0.00 0.00 3.21
3811 4019 0.752658 TAGATCAGGGTCGCCACATG 59.247 55.000 0.00 0.00 0.00 3.21
3812 4020 1.221840 GATCAGGGTCGCCACATGT 59.778 57.895 0.00 0.00 0.00 3.21
3813 4021 1.078214 ATCAGGGTCGCCACATGTG 60.078 57.895 19.31 19.31 0.00 3.21
3823 4031 2.575108 CCACATGTGGCTTGATGCT 58.425 52.632 31.13 0.00 44.73 3.79
3824 4032 0.454600 CCACATGTGGCTTGATGCTC 59.545 55.000 31.13 0.00 44.73 4.26
3825 4033 0.454600 CACATGTGGCTTGATGCTCC 59.545 55.000 18.51 0.00 42.39 4.70
3826 4034 0.682209 ACATGTGGCTTGATGCTCCC 60.682 55.000 0.00 0.00 42.39 4.30
3827 4035 1.076485 ATGTGGCTTGATGCTCCCC 60.076 57.895 0.00 0.00 42.39 4.81
3828 4036 1.866483 ATGTGGCTTGATGCTCCCCA 61.866 55.000 0.00 0.00 42.39 4.96
3829 4037 1.076485 GTGGCTTGATGCTCCCCAT 60.076 57.895 0.00 0.00 42.39 4.00
3830 4038 1.076559 TGGCTTGATGCTCCCCATG 60.077 57.895 0.00 0.00 42.39 3.66
3831 4039 1.228228 GGCTTGATGCTCCCCATGA 59.772 57.895 0.00 0.00 42.39 3.07
3832 4040 1.105759 GGCTTGATGCTCCCCATGAC 61.106 60.000 0.00 0.00 42.39 3.06
3833 4041 1.105759 GCTTGATGCTCCCCATGACC 61.106 60.000 0.00 0.00 38.95 4.02
3834 4042 0.466922 CTTGATGCTCCCCATGACCC 60.467 60.000 0.00 0.00 33.29 4.46
3835 4043 0.920763 TTGATGCTCCCCATGACCCT 60.921 55.000 0.00 0.00 33.29 4.34
3836 4044 0.920763 TGATGCTCCCCATGACCCTT 60.921 55.000 0.00 0.00 33.29 3.95
3837 4045 0.259938 GATGCTCCCCATGACCCTTT 59.740 55.000 0.00 0.00 33.29 3.11
3838 4046 0.712380 ATGCTCCCCATGACCCTTTT 59.288 50.000 0.00 0.00 31.48 2.27
3839 4047 0.486879 TGCTCCCCATGACCCTTTTT 59.513 50.000 0.00 0.00 0.00 1.94
3840 4048 0.897621 GCTCCCCATGACCCTTTTTG 59.102 55.000 0.00 0.00 0.00 2.44
3841 4049 1.827245 GCTCCCCATGACCCTTTTTGT 60.827 52.381 0.00 0.00 0.00 2.83
3842 4050 2.556559 GCTCCCCATGACCCTTTTTGTA 60.557 50.000 0.00 0.00 0.00 2.41
3843 4051 3.881713 GCTCCCCATGACCCTTTTTGTAT 60.882 47.826 0.00 0.00 0.00 2.29
3844 4052 3.954258 CTCCCCATGACCCTTTTTGTATC 59.046 47.826 0.00 0.00 0.00 2.24
3845 4053 3.031013 CCCCATGACCCTTTTTGTATCC 58.969 50.000 0.00 0.00 0.00 2.59
3846 4054 3.031013 CCCATGACCCTTTTTGTATCCC 58.969 50.000 0.00 0.00 0.00 3.85
3847 4055 3.565449 CCCATGACCCTTTTTGTATCCCA 60.565 47.826 0.00 0.00 0.00 4.37
3848 4056 3.447229 CCATGACCCTTTTTGTATCCCAC 59.553 47.826 0.00 0.00 0.00 4.61
3849 4057 4.344104 CATGACCCTTTTTGTATCCCACT 58.656 43.478 0.00 0.00 0.00 4.00
3850 4058 5.505780 CATGACCCTTTTTGTATCCCACTA 58.494 41.667 0.00 0.00 0.00 2.74
3851 4059 4.913784 TGACCCTTTTTGTATCCCACTAC 58.086 43.478 0.00 0.00 0.00 2.73
3852 4060 4.351407 TGACCCTTTTTGTATCCCACTACA 59.649 41.667 0.00 0.00 0.00 2.74
3853 4061 5.014755 TGACCCTTTTTGTATCCCACTACAT 59.985 40.000 0.00 0.00 31.94 2.29
3854 4062 5.261216 ACCCTTTTTGTATCCCACTACATG 58.739 41.667 0.00 0.00 31.94 3.21
3855 4063 5.222254 ACCCTTTTTGTATCCCACTACATGT 60.222 40.000 2.69 2.69 31.94 3.21
3856 4064 5.125417 CCCTTTTTGTATCCCACTACATGTG 59.875 44.000 9.11 0.93 45.80 3.21
3874 4082 9.722056 CTACATGTGGAATTTGAGTAATAAAGC 57.278 33.333 9.11 0.00 0.00 3.51
3875 4083 8.353423 ACATGTGGAATTTGAGTAATAAAGCT 57.647 30.769 0.00 0.00 0.00 3.74
3876 4084 8.806146 ACATGTGGAATTTGAGTAATAAAGCTT 58.194 29.630 0.00 0.00 0.00 3.74
3877 4085 9.079833 CATGTGGAATTTGAGTAATAAAGCTTG 57.920 33.333 0.00 0.00 0.00 4.01
3878 4086 7.601856 TGTGGAATTTGAGTAATAAAGCTTGG 58.398 34.615 0.00 0.00 0.00 3.61
3879 4087 7.232534 TGTGGAATTTGAGTAATAAAGCTTGGT 59.767 33.333 0.00 0.00 0.00 3.67
3880 4088 8.088365 GTGGAATTTGAGTAATAAAGCTTGGTT 58.912 33.333 0.00 0.30 0.00 3.67
3881 4089 8.646900 TGGAATTTGAGTAATAAAGCTTGGTTT 58.353 29.630 0.00 3.33 0.00 3.27
3885 4093 9.923143 ATTTGAGTAATAAAGCTTGGTTTAACC 57.077 29.630 7.27 7.27 39.22 2.85
3886 4094 7.457024 TGAGTAATAAAGCTTGGTTTAACCC 57.543 36.000 12.02 0.00 37.50 4.11
3887 4095 6.434965 TGAGTAATAAAGCTTGGTTTAACCCC 59.565 38.462 12.02 0.23 37.50 4.95
3888 4096 6.558498 AGTAATAAAGCTTGGTTTAACCCCT 58.442 36.000 12.02 2.64 37.50 4.79
3889 4097 7.701815 AGTAATAAAGCTTGGTTTAACCCCTA 58.298 34.615 12.02 0.00 37.50 3.53
3890 4098 8.172070 AGTAATAAAGCTTGGTTTAACCCCTAA 58.828 33.333 12.02 0.00 37.50 2.69
3891 4099 7.859026 AATAAAGCTTGGTTTAACCCCTAAA 57.141 32.000 12.02 0.00 37.50 1.85
3892 4100 7.859026 ATAAAGCTTGGTTTAACCCCTAAAA 57.141 32.000 12.02 0.00 37.50 1.52
3893 4101 6.563037 AAAGCTTGGTTTAACCCCTAAAAA 57.437 33.333 12.02 0.00 37.50 1.94
3950 4158 3.740141 GCTATTAAAGCCCAGTCTGCGTA 60.740 47.826 0.00 0.00 46.25 4.42
3953 4161 0.324943 AAAGCCCAGTCTGCGTATGT 59.675 50.000 0.00 0.00 0.00 2.29
3954 4162 0.391661 AAGCCCAGTCTGCGTATGTG 60.392 55.000 0.00 0.00 0.00 3.21
3955 4163 2.464459 GCCCAGTCTGCGTATGTGC 61.464 63.158 0.00 0.00 0.00 4.57
3956 4164 1.219124 CCCAGTCTGCGTATGTGCT 59.781 57.895 0.00 0.00 35.36 4.40
3957 4165 0.459899 CCCAGTCTGCGTATGTGCTA 59.540 55.000 0.00 0.00 35.36 3.49
3958 4166 1.069204 CCCAGTCTGCGTATGTGCTAT 59.931 52.381 0.00 0.00 35.36 2.97
3959 4167 2.296190 CCCAGTCTGCGTATGTGCTATA 59.704 50.000 0.00 0.00 35.36 1.31
3960 4168 3.056536 CCCAGTCTGCGTATGTGCTATAT 60.057 47.826 0.00 0.00 35.36 0.86
3961 4169 4.157840 CCCAGTCTGCGTATGTGCTATATA 59.842 45.833 0.00 0.00 35.36 0.86
4010 4218 3.526534 GCTGGAGTTTCTCTACCACATC 58.473 50.000 0.00 0.00 0.00 3.06
4046 4285 5.619625 AACTTACCGACTAGTGTCAGTAC 57.380 43.478 0.00 0.00 43.06 2.73
4049 4288 3.413846 ACCGACTAGTGTCAGTACTCA 57.586 47.619 0.00 0.00 43.06 3.41
4055 4294 6.150318 CGACTAGTGTCAGTACTCACAAATT 58.850 40.000 0.00 0.00 43.06 1.82
4056 4295 6.088217 CGACTAGTGTCAGTACTCACAAATTG 59.912 42.308 0.00 0.00 43.06 2.32
4057 4296 6.817184 ACTAGTGTCAGTACTCACAAATTGT 58.183 36.000 0.00 0.00 37.07 2.71
4058 4297 7.948357 ACTAGTGTCAGTACTCACAAATTGTA 58.052 34.615 0.00 0.00 37.07 2.41
4059 4298 7.866393 ACTAGTGTCAGTACTCACAAATTGTAC 59.134 37.037 0.00 0.00 37.07 2.90
4067 4306 7.948357 AGTACTCACAAATTGTACTGTAGTGA 58.052 34.615 0.00 5.55 43.32 3.41
4075 4314 7.985184 ACAAATTGTACTGTAGTGAACTTCAGA 59.015 33.333 19.99 5.12 41.93 3.27
4079 4318 6.678878 TGTACTGTAGTGAACTTCAGACATC 58.321 40.000 19.99 9.71 41.93 3.06
4081 4320 6.161855 ACTGTAGTGAACTTCAGACATCAA 57.838 37.500 19.99 0.00 41.93 2.57
4082 4321 6.582636 ACTGTAGTGAACTTCAGACATCAAA 58.417 36.000 19.99 0.00 41.93 2.69
4083 4322 6.703607 ACTGTAGTGAACTTCAGACATCAAAG 59.296 38.462 19.99 0.00 41.93 2.77
4084 4323 5.991606 TGTAGTGAACTTCAGACATCAAAGG 59.008 40.000 0.00 0.00 0.00 3.11
4096 4335 1.672881 CATCAAAGGGACCGCTCATTC 59.327 52.381 0.00 0.00 0.00 2.67
4100 4339 0.620556 AAGGGACCGCTCATTCACAT 59.379 50.000 0.00 0.00 0.00 3.21
4114 4353 7.201644 CGCTCATTCACATTACAAGGATTAACT 60.202 37.037 0.00 0.00 0.00 2.24
4115 4354 9.109393 GCTCATTCACATTACAAGGATTAACTA 57.891 33.333 0.00 0.00 0.00 2.24
4229 4468 7.487822 AAGGAGTTTCACTAGATTCATGAGA 57.512 36.000 0.00 0.00 0.00 3.27
4278 4519 2.625790 TGATACTGTTTTGTGGCCAACC 59.374 45.455 7.24 0.00 0.00 3.77
4292 4533 1.752788 GCCAACCACAACCTACCAAGT 60.753 52.381 0.00 0.00 0.00 3.16
4295 4536 3.181448 CCAACCACAACCTACCAAGTAGT 60.181 47.826 1.40 0.00 34.62 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 0.108138 CAAGGACCGAGATCCACCAC 60.108 60.000 3.58 0.00 41.73 4.16
69 70 0.251787 AAAATGAAGCCCTTCCGCCT 60.252 50.000 5.64 0.00 38.77 5.52
99 101 7.015195 ACAAACCCTAAACAAGCACATAAAGAT 59.985 33.333 0.00 0.00 0.00 2.40
105 107 3.704061 ACACAAACCCTAAACAAGCACAT 59.296 39.130 0.00 0.00 0.00 3.21
111 113 5.419155 TGAACATGACACAAACCCTAAACAA 59.581 36.000 0.00 0.00 0.00 2.83
132 134 2.163509 CTGTCGTCTCTCCTTCCTGAA 58.836 52.381 0.00 0.00 0.00 3.02
185 187 4.342086 TTGGGACGGGGGCTAGGT 62.342 66.667 0.00 0.00 0.00 3.08
201 204 1.374252 CAAGGCTAGACGCACCGTT 60.374 57.895 0.00 0.00 41.37 4.44
274 277 0.445436 GCAGATGCACCGAAGACAAG 59.555 55.000 0.00 0.00 41.59 3.16
287 290 3.278668 AAGACTGGATCCAAGCAGATG 57.721 47.619 17.00 4.55 0.00 2.90
291 294 2.957402 ACAAAGACTGGATCCAAGCA 57.043 45.000 17.00 0.00 0.00 3.91
303 306 0.235926 GACTGCAGGCGAACAAAGAC 59.764 55.000 19.93 0.00 0.00 3.01
304 307 0.106708 AGACTGCAGGCGAACAAAGA 59.893 50.000 19.93 0.00 0.00 2.52
305 308 0.947244 AAGACTGCAGGCGAACAAAG 59.053 50.000 19.93 0.00 0.00 2.77
307 310 0.662619 CAAAGACTGCAGGCGAACAA 59.337 50.000 19.93 0.00 0.00 2.83
308 311 0.463654 ACAAAGACTGCAGGCGAACA 60.464 50.000 19.93 0.00 0.00 3.18
309 312 0.663153 AACAAAGACTGCAGGCGAAC 59.337 50.000 19.93 3.97 0.00 3.95
311 314 1.221466 CGAACAAAGACTGCAGGCGA 61.221 55.000 19.93 0.00 0.00 5.54
312 315 1.205064 CGAACAAAGACTGCAGGCG 59.795 57.895 19.93 4.85 0.00 5.52
313 316 1.081840 GCGAACAAAGACTGCAGGC 60.082 57.895 19.93 16.91 0.00 4.85
314 317 0.886490 AGGCGAACAAAGACTGCAGG 60.886 55.000 19.93 1.54 0.00 4.85
315 318 0.236711 CAGGCGAACAAAGACTGCAG 59.763 55.000 13.48 13.48 37.99 4.41
316 319 2.320215 CAGGCGAACAAAGACTGCA 58.680 52.632 0.00 0.00 37.99 4.41
332 335 2.425773 GCAGACACGCAAACGCAG 60.426 61.111 0.00 0.00 45.53 5.18
386 389 1.028905 CAACAACCACCATTGTCCGT 58.971 50.000 0.00 0.00 42.01 4.69
393 396 2.298729 GCACCATAACAACAACCACCAT 59.701 45.455 0.00 0.00 0.00 3.55
394 397 1.683917 GCACCATAACAACAACCACCA 59.316 47.619 0.00 0.00 0.00 4.17
431 434 2.129607 TCCGAAAGTCGTTGTGCTAAC 58.870 47.619 0.00 0.00 38.40 2.34
439 442 1.798813 GCAGACAATCCGAAAGTCGTT 59.201 47.619 0.00 0.00 38.40 3.85
458 461 3.366374 GGAGGTGCAAATCTTGTTGTAGC 60.366 47.826 0.00 0.00 40.54 3.58
480 486 0.174845 TCATTACGCCTTCCTCACCG 59.825 55.000 0.00 0.00 0.00 4.94
488 496 2.112815 GCCGCCTTCATTACGCCTT 61.113 57.895 0.00 0.00 0.00 4.35
551 559 6.387041 ACAGAGGGCACTAAAAGTAAAAAC 57.613 37.500 0.00 0.00 0.00 2.43
568 577 6.516739 TCAACTGTCAAGATAGTACAGAGG 57.483 41.667 8.57 1.05 42.59 3.69
585 594 7.804600 TGAAAACTTTCGATCATTCATCAACTG 59.195 33.333 0.00 0.00 40.01 3.16
586 595 7.874940 TGAAAACTTTCGATCATTCATCAACT 58.125 30.769 0.00 0.00 40.01 3.16
628 637 6.671779 TGGATTTTGGGAAGTTATTATTGCCT 59.328 34.615 0.00 0.00 38.82 4.75
629 638 6.883744 TGGATTTTGGGAAGTTATTATTGCC 58.116 36.000 0.00 0.00 38.54 4.52
637 646 4.770010 GTGGACATGGATTTTGGGAAGTTA 59.230 41.667 0.00 0.00 0.00 2.24
643 652 0.817013 CCGTGGACATGGATTTTGGG 59.183 55.000 4.52 0.00 39.90 4.12
644 653 1.544724 ACCGTGGACATGGATTTTGG 58.455 50.000 17.03 0.00 39.90 3.28
676 685 2.839486 TCCACAAGCAAGTACTCCAG 57.161 50.000 0.00 0.00 0.00 3.86
686 695 3.454082 AGGAAAACCAAAATCCACAAGCA 59.546 39.130 0.00 0.00 35.62 3.91
687 696 4.071961 AGGAAAACCAAAATCCACAAGC 57.928 40.909 0.00 0.00 35.62 4.01
818 961 1.832883 TGGATTTGGATTGGACGGTG 58.167 50.000 0.00 0.00 0.00 4.94
819 962 2.167662 GTTGGATTTGGATTGGACGGT 58.832 47.619 0.00 0.00 0.00 4.83
867 1010 3.081804 GGGTTTTATAGATGCGATGGGG 58.918 50.000 0.00 0.00 0.00 4.96
897 1041 0.763223 GCGGGGGAGGAGGATTTCTA 60.763 60.000 0.00 0.00 0.00 2.10
1345 1504 3.663233 CGATCTACGCGTTTCAAGCAAAA 60.663 43.478 20.78 0.00 34.51 2.44
1375 1534 2.584608 CCGTCCAGATCCACCCAC 59.415 66.667 0.00 0.00 0.00 4.61
1377 1536 4.176752 GCCCGTCCAGATCCACCC 62.177 72.222 0.00 0.00 0.00 4.61
1378 1537 2.670148 AAGCCCGTCCAGATCCACC 61.670 63.158 0.00 0.00 0.00 4.61
1394 1553 2.148768 GTACGAAACCCAAGGTCCAAG 58.851 52.381 0.00 0.00 33.12 3.61
1399 1558 4.159879 CAGATCTAGTACGAAACCCAAGGT 59.840 45.833 0.00 0.00 37.65 3.50
1400 1559 4.441634 CCAGATCTAGTACGAAACCCAAGG 60.442 50.000 0.00 0.00 0.00 3.61
1442 1601 1.537202 GCTTAAACCTCACCTGCACTG 59.463 52.381 0.00 0.00 0.00 3.66
1467 1626 2.038814 AAACCCAGCCGCCCAAAAAG 62.039 55.000 0.00 0.00 0.00 2.27
1528 1689 2.460918 CGTAAATCAGGTCGCTACTGG 58.539 52.381 0.00 0.00 36.62 4.00
1530 1691 2.205307 GCGTAAATCAGGTCGCTACT 57.795 50.000 0.00 0.00 44.28 2.57
1584 1745 2.091541 ACCACGGCAAAACTCATATGG 58.908 47.619 2.13 0.00 0.00 2.74
1586 1747 3.057596 CACAACCACGGCAAAACTCATAT 60.058 43.478 0.00 0.00 0.00 1.78
1658 1822 1.487976 AGCCCAGACATATGGACAGTG 59.512 52.381 7.80 0.00 43.57 3.66
1671 1873 4.796110 AATCCTATTTTAGCAGCCCAGA 57.204 40.909 0.00 0.00 0.00 3.86
1692 1894 5.902760 AGCCCAGCCATATGGAATATTAAA 58.097 37.500 26.47 0.00 43.57 1.52
1747 1949 2.159014 TCAAGCGCGGGTAATACTCAAT 60.159 45.455 8.83 0.00 0.00 2.57
1753 1955 2.319136 ACATTCAAGCGCGGGTAATA 57.681 45.000 8.83 0.00 0.00 0.98
1760 1962 2.840176 GACAAACATACATTCAAGCGCG 59.160 45.455 0.00 0.00 0.00 6.86
1771 1973 4.036262 TCTGCCACAAACTGACAAACATAC 59.964 41.667 0.00 0.00 0.00 2.39
1837 2039 7.275779 ACAATGTTTCTATACACTAGCGACTTG 59.724 37.037 0.00 0.00 0.00 3.16
1893 2095 8.980481 AATTCAGAGAAAACAAACCTAAGAGA 57.020 30.769 0.00 0.00 0.00 3.10
1958 2160 6.008696 TGTAAGTTTGAGAAAGGGAGGAAA 57.991 37.500 0.00 0.00 0.00 3.13
1962 2164 5.611374 TGTCTGTAAGTTTGAGAAAGGGAG 58.389 41.667 0.00 0.00 33.76 4.30
1982 2184 8.650714 GCTGAACTTCAATAATTCCAAAATGTC 58.349 33.333 0.00 0.00 0.00 3.06
2044 2246 1.269621 ACGACTAATGGCGCATAGGTC 60.270 52.381 10.83 9.53 0.00 3.85
2114 2316 5.242434 TGTACCATACACAGAAACCACATC 58.758 41.667 0.00 0.00 32.89 3.06
2268 2472 2.238521 GGAGTGACAATGGAAGGCAAA 58.761 47.619 0.00 0.00 0.00 3.68
2337 2541 3.685272 GGCAGTGCTTAAGGAGTAGAAAC 59.315 47.826 16.11 0.00 0.00 2.78
2352 2556 3.119495 ACGGAGATAAAATTTGGCAGTGC 60.119 43.478 6.55 6.55 0.00 4.40
2397 2601 4.859304 AACATGTGCTCACAAATGACAT 57.141 36.364 6.81 0.00 43.28 3.06
2430 2634 1.376543 ACAGCAAGATTGGCAGATCG 58.623 50.000 0.00 0.00 0.00 3.69
2676 2880 4.209911 CGCACATGTAATCTGTGATACTGG 59.790 45.833 0.00 0.00 45.44 4.00
2699 2903 1.798813 CTCTTGAACGTGCAAGGGTAC 59.201 52.381 31.37 0.00 44.14 3.34
2773 2978 2.370189 GGAATGATCACCTCGGGAATCT 59.630 50.000 0.00 0.00 0.00 2.40
2828 3033 1.592081 GCTCTGTTGATCTCATGACGC 59.408 52.381 0.00 0.00 0.00 5.19
2985 3190 4.375272 CATAGACCAGCAATCACCTACAG 58.625 47.826 0.00 0.00 0.00 2.74
3080 3285 7.396540 AAGAAGAGGTGCTAAAAATGGTATG 57.603 36.000 0.00 0.00 0.00 2.39
3342 3549 1.733912 CGCCATCATTCCATACCGATG 59.266 52.381 0.00 0.00 35.97 3.84
3343 3550 1.623311 TCGCCATCATTCCATACCGAT 59.377 47.619 0.00 0.00 0.00 4.18
3344 3551 1.044611 TCGCCATCATTCCATACCGA 58.955 50.000 0.00 0.00 0.00 4.69
3345 3552 1.148310 GTCGCCATCATTCCATACCG 58.852 55.000 0.00 0.00 0.00 4.02
3346 3553 2.146342 CAGTCGCCATCATTCCATACC 58.854 52.381 0.00 0.00 0.00 2.73
3347 3554 2.146342 CCAGTCGCCATCATTCCATAC 58.854 52.381 0.00 0.00 0.00 2.39
3348 3555 1.768275 ACCAGTCGCCATCATTCCATA 59.232 47.619 0.00 0.00 0.00 2.74
3427 3634 4.201558 CGCAAACAACGAAAACAGTCTTAC 59.798 41.667 0.00 0.00 0.00 2.34
3428 3635 4.093115 TCGCAAACAACGAAAACAGTCTTA 59.907 37.500 0.00 0.00 36.44 2.10
3432 3639 2.160813 AGTCGCAAACAACGAAAACAGT 59.839 40.909 0.00 0.00 41.93 3.55
3586 3794 0.511221 CAAACTGCAGCAATGCAAGC 59.489 50.000 15.27 11.90 44.88 4.01
3623 3831 4.811969 TCTAAAGCCCAACGAGTTGATA 57.188 40.909 16.66 2.61 42.93 2.15
3652 3860 6.618811 AGTGGTACAATAGAAACGAGTAGTG 58.381 40.000 0.00 0.00 44.16 2.74
3653 3861 6.830873 AGTGGTACAATAGAAACGAGTAGT 57.169 37.500 0.00 0.00 44.16 2.73
3654 3862 8.618677 TGATAGTGGTACAATAGAAACGAGTAG 58.381 37.037 0.00 0.00 43.88 2.57
3687 3895 9.658475 CTAACATCGTTTGTTTGATTTCAGTAA 57.342 29.630 10.80 0.00 46.51 2.24
3688 3896 7.801315 GCTAACATCGTTTGTTTGATTTCAGTA 59.199 33.333 15.16 0.00 46.51 2.74
3689 3897 6.636850 GCTAACATCGTTTGTTTGATTTCAGT 59.363 34.615 15.16 0.00 46.51 3.41
3690 3898 6.636447 TGCTAACATCGTTTGTTTGATTTCAG 59.364 34.615 15.16 6.52 46.51 3.02
3691 3899 6.499172 TGCTAACATCGTTTGTTTGATTTCA 58.501 32.000 15.16 5.26 46.51 2.69
3692 3900 6.984740 TGCTAACATCGTTTGTTTGATTTC 57.015 33.333 15.16 3.46 46.51 2.17
3693 3901 7.945033 AATGCTAACATCGTTTGTTTGATTT 57.055 28.000 15.16 7.79 46.51 2.17
3694 3902 7.945033 AAATGCTAACATCGTTTGTTTGATT 57.055 28.000 15.16 10.51 46.51 2.57
3695 3903 9.638239 ATTAAATGCTAACATCGTTTGTTTGAT 57.362 25.926 15.16 6.90 46.51 2.57
3696 3904 9.469807 AATTAAATGCTAACATCGTTTGTTTGA 57.530 25.926 15.16 5.50 46.51 2.69
3697 3905 9.514822 CAATTAAATGCTAACATCGTTTGTTTG 57.485 29.630 10.80 10.15 46.51 2.93
3698 3906 8.220434 GCAATTAAATGCTAACATCGTTTGTTT 58.780 29.630 8.29 0.00 43.24 2.83
3699 3907 7.728895 GCAATTAAATGCTAACATCGTTTGTT 58.271 30.769 8.29 10.46 42.87 2.83
3700 3908 7.276953 GCAATTAAATGCTAACATCGTTTGT 57.723 32.000 8.29 0.00 43.06 2.83
3713 3921 7.795859 TCAAAAGTAAGCAAGCAATTAAATGC 58.204 30.769 7.45 7.45 46.78 3.56
3714 3922 9.801714 CTTCAAAAGTAAGCAAGCAATTAAATG 57.198 29.630 0.00 0.00 0.00 2.32
3715 3923 8.992073 CCTTCAAAAGTAAGCAAGCAATTAAAT 58.008 29.630 0.00 0.00 0.00 1.40
3716 3924 7.042119 GCCTTCAAAAGTAAGCAAGCAATTAAA 60.042 33.333 0.00 0.00 0.00 1.52
3717 3925 6.423604 GCCTTCAAAAGTAAGCAAGCAATTAA 59.576 34.615 0.00 0.00 0.00 1.40
3718 3926 5.925969 GCCTTCAAAAGTAAGCAAGCAATTA 59.074 36.000 0.00 0.00 0.00 1.40
3719 3927 4.751600 GCCTTCAAAAGTAAGCAAGCAATT 59.248 37.500 0.00 0.00 0.00 2.32
3720 3928 4.202243 TGCCTTCAAAAGTAAGCAAGCAAT 60.202 37.500 0.00 0.00 0.00 3.56
3721 3929 3.131933 TGCCTTCAAAAGTAAGCAAGCAA 59.868 39.130 0.00 0.00 0.00 3.91
3722 3930 2.692557 TGCCTTCAAAAGTAAGCAAGCA 59.307 40.909 0.00 0.00 0.00 3.91
3723 3931 3.004734 TCTGCCTTCAAAAGTAAGCAAGC 59.995 43.478 0.00 0.00 0.00 4.01
3724 3932 4.791974 CTCTGCCTTCAAAAGTAAGCAAG 58.208 43.478 0.00 0.00 0.00 4.01
3725 3933 3.004734 GCTCTGCCTTCAAAAGTAAGCAA 59.995 43.478 0.00 0.00 0.00 3.91
3726 3934 2.554032 GCTCTGCCTTCAAAAGTAAGCA 59.446 45.455 0.00 0.00 0.00 3.91
3727 3935 2.816672 AGCTCTGCCTTCAAAAGTAAGC 59.183 45.455 0.00 0.00 0.00 3.09
3728 3936 5.241662 AGTAGCTCTGCCTTCAAAAGTAAG 58.758 41.667 0.00 0.00 0.00 2.34
3729 3937 5.228945 AGTAGCTCTGCCTTCAAAAGTAA 57.771 39.130 0.00 0.00 0.00 2.24
3730 3938 4.891992 AGTAGCTCTGCCTTCAAAAGTA 57.108 40.909 0.00 0.00 0.00 2.24
3731 3939 3.778954 AGTAGCTCTGCCTTCAAAAGT 57.221 42.857 0.00 0.00 0.00 2.66
3732 3940 7.475771 CTATTAGTAGCTCTGCCTTCAAAAG 57.524 40.000 0.00 0.00 0.00 2.27
3747 3955 4.213694 ACCTGTCGACATCGCTATTAGTAG 59.786 45.833 20.40 2.02 39.60 2.57
3748 3956 4.132336 ACCTGTCGACATCGCTATTAGTA 58.868 43.478 20.40 0.00 39.60 1.82
3749 3957 2.950309 ACCTGTCGACATCGCTATTAGT 59.050 45.455 20.40 2.98 39.60 2.24
3750 3958 3.627732 ACCTGTCGACATCGCTATTAG 57.372 47.619 20.40 3.58 39.60 1.73
3751 3959 4.556104 GCTAACCTGTCGACATCGCTATTA 60.556 45.833 20.40 10.13 39.60 0.98
3752 3960 2.961526 AACCTGTCGACATCGCTATT 57.038 45.000 20.40 4.64 39.60 1.73
3753 3961 2.287668 GCTAACCTGTCGACATCGCTAT 60.288 50.000 20.40 5.28 39.60 2.97
3754 3962 1.065102 GCTAACCTGTCGACATCGCTA 59.935 52.381 20.40 7.16 39.60 4.26
3755 3963 0.179134 GCTAACCTGTCGACATCGCT 60.179 55.000 20.40 6.32 39.60 4.93
3756 3964 1.146358 GGCTAACCTGTCGACATCGC 61.146 60.000 20.40 15.75 39.60 4.58
3757 3965 0.172578 TGGCTAACCTGTCGACATCG 59.827 55.000 20.40 14.56 37.53 3.84
3758 3966 2.271800 CTTGGCTAACCTGTCGACATC 58.728 52.381 20.40 4.33 36.63 3.06
3759 3967 1.623811 ACTTGGCTAACCTGTCGACAT 59.376 47.619 20.40 7.08 36.63 3.06
3760 3968 1.045407 ACTTGGCTAACCTGTCGACA 58.955 50.000 18.88 18.88 36.63 4.35
3761 3969 2.165319 AACTTGGCTAACCTGTCGAC 57.835 50.000 9.11 9.11 36.63 4.20
3762 3970 2.489971 CAAACTTGGCTAACCTGTCGA 58.510 47.619 0.00 0.00 36.63 4.20
3763 3971 1.069227 GCAAACTTGGCTAACCTGTCG 60.069 52.381 0.00 0.00 36.63 4.35
3764 3972 2.226674 GAGCAAACTTGGCTAACCTGTC 59.773 50.000 0.00 0.00 42.78 3.51
3765 3973 2.230660 GAGCAAACTTGGCTAACCTGT 58.769 47.619 0.00 0.00 42.78 4.00
3766 3974 2.229792 TGAGCAAACTTGGCTAACCTG 58.770 47.619 0.00 0.00 42.78 4.00
3767 3975 2.656947 TGAGCAAACTTGGCTAACCT 57.343 45.000 0.00 0.00 42.78 3.50
3768 3976 3.255642 TGAATGAGCAAACTTGGCTAACC 59.744 43.478 0.00 0.00 42.78 2.85
3769 3977 4.022849 AGTGAATGAGCAAACTTGGCTAAC 60.023 41.667 0.00 0.00 42.78 2.34
3770 3978 4.144297 AGTGAATGAGCAAACTTGGCTAA 58.856 39.130 0.00 0.00 42.78 3.09
3771 3979 3.754965 AGTGAATGAGCAAACTTGGCTA 58.245 40.909 0.00 0.00 42.78 3.93
3772 3980 2.590821 AGTGAATGAGCAAACTTGGCT 58.409 42.857 0.00 0.00 46.07 4.75
3773 3981 3.753272 TCTAGTGAATGAGCAAACTTGGC 59.247 43.478 0.00 0.00 0.00 4.52
3774 3982 5.645067 TGATCTAGTGAATGAGCAAACTTGG 59.355 40.000 0.00 0.00 0.00 3.61
3775 3983 6.183360 CCTGATCTAGTGAATGAGCAAACTTG 60.183 42.308 0.00 0.00 0.00 3.16
3776 3984 5.879223 CCTGATCTAGTGAATGAGCAAACTT 59.121 40.000 0.00 0.00 0.00 2.66
3777 3985 5.426504 CCTGATCTAGTGAATGAGCAAACT 58.573 41.667 0.00 0.00 0.00 2.66
3778 3986 4.574013 CCCTGATCTAGTGAATGAGCAAAC 59.426 45.833 0.00 0.00 0.00 2.93
3779 3987 4.225942 ACCCTGATCTAGTGAATGAGCAAA 59.774 41.667 0.00 0.00 0.00 3.68
3780 3988 3.776969 ACCCTGATCTAGTGAATGAGCAA 59.223 43.478 0.00 0.00 0.00 3.91
3781 3989 3.378512 ACCCTGATCTAGTGAATGAGCA 58.621 45.455 0.00 0.00 0.00 4.26
3782 3990 3.551863 CGACCCTGATCTAGTGAATGAGC 60.552 52.174 0.00 0.00 0.00 4.26
3783 3991 3.551863 GCGACCCTGATCTAGTGAATGAG 60.552 52.174 0.00 0.00 0.00 2.90
3784 3992 2.362397 GCGACCCTGATCTAGTGAATGA 59.638 50.000 0.00 0.00 0.00 2.57
3785 3993 2.546795 GGCGACCCTGATCTAGTGAATG 60.547 54.545 0.00 0.00 0.00 2.67
3786 3994 1.689273 GGCGACCCTGATCTAGTGAAT 59.311 52.381 0.00 0.00 0.00 2.57
3787 3995 1.112113 GGCGACCCTGATCTAGTGAA 58.888 55.000 0.00 0.00 0.00 3.18
3788 3996 0.033503 TGGCGACCCTGATCTAGTGA 60.034 55.000 0.00 0.00 0.00 3.41
3789 3997 0.103208 GTGGCGACCCTGATCTAGTG 59.897 60.000 0.00 0.00 0.00 2.74
3790 3998 0.324368 TGTGGCGACCCTGATCTAGT 60.324 55.000 0.00 0.00 0.00 2.57
3791 3999 1.043816 ATGTGGCGACCCTGATCTAG 58.956 55.000 0.00 0.00 0.00 2.43
3792 4000 0.752658 CATGTGGCGACCCTGATCTA 59.247 55.000 0.00 0.00 0.00 1.98
3793 4001 1.267574 ACATGTGGCGACCCTGATCT 61.268 55.000 0.00 0.00 0.00 2.75
3794 4002 1.091771 CACATGTGGCGACCCTGATC 61.092 60.000 18.51 0.00 0.00 2.92
3795 4003 1.078214 CACATGTGGCGACCCTGAT 60.078 57.895 18.51 0.00 0.00 2.90
3796 4004 2.347114 CACATGTGGCGACCCTGA 59.653 61.111 18.51 0.00 0.00 3.86
3797 4005 2.747460 CCACATGTGGCGACCCTG 60.747 66.667 31.13 6.01 44.73 4.45
3814 4022 1.105759 GGTCATGGGGAGCATCAAGC 61.106 60.000 0.00 0.00 43.54 4.01
3815 4023 0.466922 GGGTCATGGGGAGCATCAAG 60.467 60.000 0.00 0.00 45.90 3.02
3816 4024 0.920763 AGGGTCATGGGGAGCATCAA 60.921 55.000 0.00 0.00 45.90 2.57
3817 4025 0.920763 AAGGGTCATGGGGAGCATCA 60.921 55.000 0.00 0.00 45.90 3.07
3818 4026 0.259938 AAAGGGTCATGGGGAGCATC 59.740 55.000 0.00 0.00 45.90 3.91
3819 4027 0.712380 AAAAGGGTCATGGGGAGCAT 59.288 50.000 0.00 0.00 45.90 3.79
3820 4028 0.486879 AAAAAGGGTCATGGGGAGCA 59.513 50.000 0.00 0.00 45.90 4.26
3821 4029 0.897621 CAAAAAGGGTCATGGGGAGC 59.102 55.000 0.00 0.00 43.35 4.70
3822 4030 2.309136 ACAAAAAGGGTCATGGGGAG 57.691 50.000 0.00 0.00 0.00 4.30
3823 4031 3.309556 GGATACAAAAAGGGTCATGGGGA 60.310 47.826 0.00 0.00 0.00 4.81
3824 4032 3.031013 GGATACAAAAAGGGTCATGGGG 58.969 50.000 0.00 0.00 0.00 4.96
3825 4033 3.031013 GGGATACAAAAAGGGTCATGGG 58.969 50.000 0.00 0.00 39.74 4.00
3826 4034 3.447229 GTGGGATACAAAAAGGGTCATGG 59.553 47.826 0.00 0.00 39.74 3.66
3827 4035 4.344104 AGTGGGATACAAAAAGGGTCATG 58.656 43.478 0.00 0.00 39.74 3.07
3828 4036 4.675063 AGTGGGATACAAAAAGGGTCAT 57.325 40.909 0.00 0.00 39.74 3.06
3829 4037 4.351407 TGTAGTGGGATACAAAAAGGGTCA 59.649 41.667 0.00 0.00 32.80 4.02
3830 4038 4.913784 TGTAGTGGGATACAAAAAGGGTC 58.086 43.478 0.00 0.00 32.80 4.46
3831 4039 5.222254 ACATGTAGTGGGATACAAAAAGGGT 60.222 40.000 0.00 0.00 39.04 4.34
3832 4040 5.125417 CACATGTAGTGGGATACAAAAAGGG 59.875 44.000 0.00 0.00 44.69 3.95
3833 4041 6.194796 CACATGTAGTGGGATACAAAAAGG 57.805 41.667 0.00 0.00 44.69 3.11
3848 4056 9.722056 GCTTTATTACTCAAATTCCACATGTAG 57.278 33.333 0.00 0.00 0.00 2.74
3849 4057 9.461312 AGCTTTATTACTCAAATTCCACATGTA 57.539 29.630 0.00 0.00 0.00 2.29
3850 4058 8.353423 AGCTTTATTACTCAAATTCCACATGT 57.647 30.769 0.00 0.00 0.00 3.21
3851 4059 9.079833 CAAGCTTTATTACTCAAATTCCACATG 57.920 33.333 0.00 0.00 0.00 3.21
3852 4060 8.253113 CCAAGCTTTATTACTCAAATTCCACAT 58.747 33.333 0.00 0.00 0.00 3.21
3853 4061 7.232534 ACCAAGCTTTATTACTCAAATTCCACA 59.767 33.333 0.00 0.00 0.00 4.17
3854 4062 7.602753 ACCAAGCTTTATTACTCAAATTCCAC 58.397 34.615 0.00 0.00 0.00 4.02
3855 4063 7.775053 ACCAAGCTTTATTACTCAAATTCCA 57.225 32.000 0.00 0.00 0.00 3.53
3859 4067 9.923143 GGTTAAACCAAGCTTTATTACTCAAAT 57.077 29.630 0.00 0.00 38.42 2.32
3860 4068 8.361889 GGGTTAAACCAAGCTTTATTACTCAAA 58.638 33.333 4.11 0.00 41.02 2.69
3861 4069 7.039574 GGGGTTAAACCAAGCTTTATTACTCAA 60.040 37.037 12.67 0.00 41.02 3.02
3862 4070 6.434965 GGGGTTAAACCAAGCTTTATTACTCA 59.565 38.462 12.67 0.00 41.02 3.41
3863 4071 6.662234 AGGGGTTAAACCAAGCTTTATTACTC 59.338 38.462 12.67 0.00 41.02 2.59
3864 4072 6.558498 AGGGGTTAAACCAAGCTTTATTACT 58.442 36.000 12.67 0.00 41.02 2.24
3865 4073 6.845758 AGGGGTTAAACCAAGCTTTATTAC 57.154 37.500 12.67 0.00 41.02 1.89
3866 4074 8.953223 TTTAGGGGTTAAACCAAGCTTTATTA 57.047 30.769 12.67 0.00 41.02 0.98
3867 4075 7.859026 TTTAGGGGTTAAACCAAGCTTTATT 57.141 32.000 12.67 0.00 41.02 1.40
3868 4076 7.859026 TTTTAGGGGTTAAACCAAGCTTTAT 57.141 32.000 12.67 0.00 41.02 1.40
3869 4077 7.672122 TTTTTAGGGGTTAAACCAAGCTTTA 57.328 32.000 12.67 0.00 41.02 1.85
3870 4078 6.563037 TTTTTAGGGGTTAAACCAAGCTTT 57.437 33.333 12.67 0.00 41.02 3.51
3892 4100 8.091449 TGTTTTTCAACAGTGATAGTGGTTTTT 58.909 29.630 0.00 0.00 38.03 1.94
3893 4101 7.607250 TGTTTTTCAACAGTGATAGTGGTTTT 58.393 30.769 0.00 0.00 38.03 2.43
3894 4102 7.164230 TGTTTTTCAACAGTGATAGTGGTTT 57.836 32.000 0.00 0.00 38.03 3.27
3895 4103 6.767524 TGTTTTTCAACAGTGATAGTGGTT 57.232 33.333 0.00 0.00 38.03 3.67
3896 4104 6.767524 TTGTTTTTCAACAGTGATAGTGGT 57.232 33.333 0.00 0.00 43.92 4.16
3912 4120 9.767684 GCTTTAATAGCACAAAAAGTTGTTTTT 57.232 25.926 0.00 0.00 46.47 1.94
3943 4151 7.121315 ACTCTGAATATATAGCACATACGCAGA 59.879 37.037 0.00 0.00 0.00 4.26
3950 4158 6.755607 CGATGCACTCTGAATATATAGCACAT 59.244 38.462 0.00 0.00 33.18 3.21
3953 4161 6.272822 ACGATGCACTCTGAATATATAGCA 57.727 37.500 0.00 0.00 35.03 3.49
3954 4162 6.035435 CCAACGATGCACTCTGAATATATAGC 59.965 42.308 0.00 0.00 0.00 2.97
3955 4163 6.035435 GCCAACGATGCACTCTGAATATATAG 59.965 42.308 0.00 0.00 0.00 1.31
3956 4164 5.869344 GCCAACGATGCACTCTGAATATATA 59.131 40.000 0.00 0.00 0.00 0.86
3957 4165 4.692625 GCCAACGATGCACTCTGAATATAT 59.307 41.667 0.00 0.00 0.00 0.86
3958 4166 4.058124 GCCAACGATGCACTCTGAATATA 58.942 43.478 0.00 0.00 0.00 0.86
3959 4167 2.874701 GCCAACGATGCACTCTGAATAT 59.125 45.455 0.00 0.00 0.00 1.28
3960 4168 2.279741 GCCAACGATGCACTCTGAATA 58.720 47.619 0.00 0.00 0.00 1.75
3961 4169 1.089920 GCCAACGATGCACTCTGAAT 58.910 50.000 0.00 0.00 0.00 2.57
3984 4192 4.021229 TGGTAGAGAAACTCCAGCGATTA 58.979 43.478 0.00 0.00 0.00 1.75
3988 4196 1.272490 TGTGGTAGAGAAACTCCAGCG 59.728 52.381 0.00 0.00 30.65 5.18
4010 4218 4.021719 TCGGTAAGTTTCCACTCCTACTTG 60.022 45.833 0.00 0.00 33.28 3.16
4046 4285 7.715265 AGTTCACTACAGTACAATTTGTGAG 57.285 36.000 12.30 4.54 34.99 3.51
4049 4288 7.985184 TCTGAAGTTCACTACAGTACAATTTGT 59.015 33.333 7.30 7.30 0.00 2.83
4055 4294 6.264518 TGATGTCTGAAGTTCACTACAGTACA 59.735 38.462 17.06 14.24 0.00 2.90
4056 4295 6.678878 TGATGTCTGAAGTTCACTACAGTAC 58.321 40.000 17.06 12.66 0.00 2.73
4057 4296 6.894339 TGATGTCTGAAGTTCACTACAGTA 57.106 37.500 17.06 9.10 0.00 2.74
4058 4297 5.791336 TGATGTCTGAAGTTCACTACAGT 57.209 39.130 17.06 8.98 0.00 3.55
4059 4298 6.146837 CCTTTGATGTCTGAAGTTCACTACAG 59.853 42.308 17.06 3.38 0.00 2.74
4067 4306 3.756117 GGTCCCTTTGATGTCTGAAGTT 58.244 45.455 0.00 0.00 0.00 2.66
4075 4314 0.620556 ATGAGCGGTCCCTTTGATGT 59.379 50.000 12.85 0.00 0.00 3.06
4079 4318 0.804989 GTGAATGAGCGGTCCCTTTG 59.195 55.000 12.85 0.00 0.00 2.77
4081 4320 0.620556 ATGTGAATGAGCGGTCCCTT 59.379 50.000 12.85 5.68 0.00 3.95
4082 4321 0.620556 AATGTGAATGAGCGGTCCCT 59.379 50.000 12.85 0.00 0.00 4.20
4083 4322 1.940613 GTAATGTGAATGAGCGGTCCC 59.059 52.381 12.85 2.03 0.00 4.46
4084 4323 2.627945 TGTAATGTGAATGAGCGGTCC 58.372 47.619 12.85 0.00 0.00 4.46
4134 4373 9.832445 AGGATTTCATCGTGTACTGTAAATAAT 57.168 29.630 0.00 0.00 0.00 1.28
4150 4389 9.558396 AATGTCAGAGATTTCTAGGATTTCATC 57.442 33.333 0.00 0.00 30.73 2.92
4229 4468 4.202202 GCCAGTCTGTATCAGTATGCTTCT 60.202 45.833 0.00 0.00 34.76 2.85
4278 4519 6.698380 AGTTCATACTACTTGGTAGGTTGTG 58.302 40.000 9.14 3.37 40.13 3.33
4292 4533 9.910267 TGTCTTGTGTATAGGTAGTTCATACTA 57.090 33.333 0.00 0.00 35.78 1.82
4295 4536 8.638873 CCATGTCTTGTGTATAGGTAGTTCATA 58.361 37.037 0.00 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.