Multiple sequence alignment - TraesCS3D01G159000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G159000 chr3D 100.000 8143 0 0 1 8143 128438504 128446646 0.000000e+00 15038.0
1 TraesCS3D01G159000 chr3D 92.086 1112 64 17 1677 2766 138897526 138898635 0.000000e+00 1544.0
2 TraesCS3D01G159000 chr3D 86.846 745 74 9 2057 2782 611104536 611105275 0.000000e+00 811.0
3 TraesCS3D01G159000 chr3D 95.068 365 14 3 1 362 584060295 584059932 9.170000e-159 571.0
4 TraesCS3D01G159000 chr3D 92.208 154 9 2 646 799 584059794 584059644 1.780000e-51 215.0
5 TraesCS3D01G159000 chr3D 83.796 216 30 4 11 225 566545652 566545863 4.980000e-47 200.0
6 TraesCS3D01G159000 chr3B 96.267 3482 83 17 2766 6207 182321707 182325181 0.000000e+00 5666.0
7 TraesCS3D01G159000 chr3B 92.287 752 34 6 7183 7919 182350233 182350975 0.000000e+00 1046.0
8 TraesCS3D01G159000 chr3B 89.000 500 22 7 1203 1674 182321218 182321712 9.100000e-164 588.0
9 TraesCS3D01G159000 chr3B 93.909 394 8 3 6728 7110 182343434 182343822 1.520000e-161 580.0
10 TraesCS3D01G159000 chr3B 94.415 376 17 4 830 1201 182320758 182321133 7.090000e-160 575.0
11 TraesCS3D01G159000 chr3B 95.703 256 8 1 6202 6457 182337085 182337337 7.610000e-110 409.0
12 TraesCS3D01G159000 chr3B 92.576 229 16 1 107 334 762118876 762119104 2.190000e-85 327.0
13 TraesCS3D01G159000 chr3B 87.413 286 20 12 6455 6729 182342755 182343035 1.710000e-81 315.0
14 TraesCS3D01G159000 chr3B 86.164 159 14 6 643 798 762119464 762119617 1.820000e-36 165.0
15 TraesCS3D01G159000 chr3B 100.000 43 0 0 7110 7152 182350191 182350233 6.770000e-11 80.5
16 TraesCS3D01G159000 chr3B 94.231 52 2 1 7900 7950 182359191 182359242 2.440000e-10 78.7
17 TraesCS3D01G159000 chr3A 94.538 1776 76 14 4424 6183 140007300 140009070 0.000000e+00 2723.0
18 TraesCS3D01G159000 chr3A 93.085 940 62 3 1678 2614 7574420 7573481 0.000000e+00 1373.0
19 TraesCS3D01G159000 chr3A 95.194 749 28 3 3247 3995 140005829 140006569 0.000000e+00 1177.0
20 TraesCS3D01G159000 chr3A 92.888 703 20 6 6728 7416 140013418 140014104 0.000000e+00 994.0
21 TraesCS3D01G159000 chr3A 97.118 451 11 2 1 450 476401479 476401030 0.000000e+00 760.0
22 TraesCS3D01G159000 chr3A 96.419 391 14 0 6211 6601 140009249 140009639 0.000000e+00 645.0
23 TraesCS3D01G159000 chr3A 95.122 410 15 3 792 1198 140003580 140003987 6.890000e-180 641.0
24 TraesCS3D01G159000 chr3A 93.862 391 20 3 4031 4420 140006650 140007037 3.270000e-163 586.0
25 TraesCS3D01G159000 chr3A 94.769 325 13 2 2766 3087 140005507 140005830 3.390000e-138 503.0
26 TraesCS3D01G159000 chr3A 87.228 368 22 5 1326 1674 140005151 140005512 5.920000e-106 396.0
27 TraesCS3D01G159000 chr3A 92.276 246 16 3 4419 4661 66003681 66003436 6.050000e-91 346.0
28 TraesCS3D01G159000 chr3A 93.043 230 14 2 1 230 1570461 1570234 1.310000e-87 335.0
29 TraesCS3D01G159000 chr3A 86.986 292 24 4 7420 7697 140014187 140014478 4.740000e-82 316.0
30 TraesCS3D01G159000 chr3A 89.683 252 16 5 7705 7951 140014537 140014783 6.140000e-81 313.0
31 TraesCS3D01G159000 chr3A 91.981 212 17 0 440 651 249083964 249083753 1.720000e-76 298.0
32 TraesCS3D01G159000 chr3A 91.558 154 11 1 646 799 476401037 476400886 2.300000e-50 211.0
33 TraesCS3D01G159000 chr3A 98.000 100 2 0 6630 6729 140012896 140012995 3.020000e-39 174.0
34 TraesCS3D01G159000 chr3A 89.888 89 3 2 1203 1291 140004074 140004156 8.640000e-20 110.0
35 TraesCS3D01G159000 chr3A 100.000 40 0 0 3992 4031 140006582 140006621 3.150000e-09 75.0
36 TraesCS3D01G159000 chr2D 92.799 1111 62 10 1677 2769 155469668 155468558 0.000000e+00 1592.0
37 TraesCS3D01G159000 chr2D 95.602 773 14 2 1 773 642822327 642821575 0.000000e+00 1221.0
38 TraesCS3D01G159000 chr2D 86.629 531 48 9 2262 2772 642039389 642039916 4.270000e-157 566.0
39 TraesCS3D01G159000 chr4D 92.857 1106 61 2 1677 2764 52760707 52759602 0.000000e+00 1589.0
40 TraesCS3D01G159000 chr4D 87.075 441 41 2 2340 2765 462815733 462815294 1.230000e-132 484.0
41 TraesCS3D01G159000 chr4D 81.579 114 18 3 6210 6322 474702594 474702705 3.130000e-14 91.6
42 TraesCS3D01G159000 chr1D 91.081 1110 76 8 1677 2765 427323888 427324995 0.000000e+00 1480.0
43 TraesCS3D01G159000 chr1D 88.713 443 34 2 2340 2767 319517276 319517717 2.010000e-145 527.0
44 TraesCS3D01G159000 chr1D 86.486 444 44 2 2340 2768 9219412 9219854 2.660000e-129 473.0
45 TraesCS3D01G159000 chr1D 91.870 246 17 3 4419 4661 254527058 254527303 2.810000e-89 340.0
46 TraesCS3D01G159000 chr1D 91.870 246 17 3 4419 4661 459903265 459903020 2.810000e-89 340.0
47 TraesCS3D01G159000 chr1D 95.897 195 8 0 451 645 371983177 371983371 4.740000e-82 316.0
48 TraesCS3D01G159000 chr6A 90.605 1107 83 8 1676 2763 51371849 51372953 0.000000e+00 1448.0
49 TraesCS3D01G159000 chr6A 92.093 215 16 1 437 651 570546319 570546106 1.330000e-77 302.0
50 TraesCS3D01G159000 chr1A 90.605 1107 83 5 1678 2765 581738012 581736908 0.000000e+00 1448.0
51 TraesCS3D01G159000 chr1A 92.276 246 16 3 4419 4661 532075143 532075388 6.050000e-91 346.0
52 TraesCS3D01G159000 chr6D 90.270 1110 87 7 1677 2766 411551879 411552987 0.000000e+00 1432.0
53 TraesCS3D01G159000 chr6D 90.253 1067 84 4 1677 2725 20341057 20339993 0.000000e+00 1376.0
54 TraesCS3D01G159000 chr6D 93.023 215 14 1 438 652 328147551 328147764 6.140000e-81 313.0
55 TraesCS3D01G159000 chr2A 83.394 1108 123 30 1698 2767 469224328 469225412 0.000000e+00 970.0
56 TraesCS3D01G159000 chr2A 89.177 231 21 4 444 673 433182016 433182243 1.340000e-72 285.0
57 TraesCS3D01G159000 chr2A 100.000 29 0 0 4392 4420 335821662 335821634 4.000000e-03 54.7
58 TraesCS3D01G159000 chr7A 96.222 450 17 0 1 450 503854875 503854426 0.000000e+00 737.0
59 TraesCS3D01G159000 chr7A 94.118 153 6 2 646 798 503854433 503854284 6.360000e-56 230.0
60 TraesCS3D01G159000 chrUn 88.063 444 35 3 2340 2768 132112939 132113379 2.030000e-140 510.0
61 TraesCS3D01G159000 chr5D 87.955 440 37 8 2340 2764 389374569 389374131 9.430000e-139 505.0
62 TraesCS3D01G159000 chr5D 92.920 339 23 1 1 338 491266735 491266397 7.340000e-135 492.0
63 TraesCS3D01G159000 chr5D 92.276 246 16 3 4419 4661 503246724 503246969 6.050000e-91 346.0
64 TraesCS3D01G159000 chr7B 92.276 246 16 3 4419 4661 662727856 662728101 6.050000e-91 346.0
65 TraesCS3D01G159000 chr7B 92.276 246 16 3 4419 4661 662728365 662728610 6.050000e-91 346.0
66 TraesCS3D01G159000 chr7B 92.788 208 15 0 445 652 354396248 354396455 1.330000e-77 302.0
67 TraesCS3D01G159000 chr7B 81.928 83 12 2 6182 6264 613586722 613586801 5.270000e-07 67.6
68 TraesCS3D01G159000 chr6B 92.704 233 16 1 107 338 4260957 4260725 1.310000e-87 335.0
69 TraesCS3D01G159000 chr6B 91.525 118 8 1 1 118 4261311 4261196 2.350000e-35 161.0
70 TraesCS3D01G159000 chr6B 86.184 152 11 6 649 796 4260364 4260219 1.090000e-33 156.0
71 TraesCS3D01G159000 chr6B 84.259 108 12 4 1560 1663 482880 482774 5.200000e-17 100.0
72 TraesCS3D01G159000 chr5B 91.403 221 18 1 450 670 497782036 497781817 1.330000e-77 302.0
73 TraesCS3D01G159000 chr5B 86.667 75 10 0 6247 6321 19554297 19554371 5.240000e-12 84.2
74 TraesCS3D01G159000 chr2B 91.403 221 17 2 441 661 303910850 303910632 1.330000e-77 302.0
75 TraesCS3D01G159000 chr7D 83.654 104 11 6 1555 1654 568617099 568616998 8.700000e-15 93.5
76 TraesCS3D01G159000 chr1B 83.333 102 14 3 1565 1663 635151572 635151673 3.130000e-14 91.6
77 TraesCS3D01G159000 chr1B 94.872 39 0 2 4384 4420 638729769 638729807 8.830000e-05 60.2
78 TraesCS3D01G159000 chr4A 93.878 49 3 0 795 843 685849256 685849304 3.150000e-09 75.0
79 TraesCS3D01G159000 chr4A 100.000 33 0 0 766 798 657095480 657095512 2.450000e-05 62.1
80 TraesCS3D01G159000 chr4B 84.000 75 12 0 6247 6321 650959174 650959100 1.130000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G159000 chr3D 128438504 128446646 8142 False 15038.000000 15038 100.000000 1 8143 1 chr3D.!!$F1 8142
1 TraesCS3D01G159000 chr3D 138897526 138898635 1109 False 1544.000000 1544 92.086000 1677 2766 1 chr3D.!!$F2 1089
2 TraesCS3D01G159000 chr3D 611104536 611105275 739 False 811.000000 811 86.846000 2057 2782 1 chr3D.!!$F4 725
3 TraesCS3D01G159000 chr3D 584059644 584060295 651 True 393.000000 571 93.638000 1 799 2 chr3D.!!$R1 798
4 TraesCS3D01G159000 chr3B 182320758 182325181 4423 False 2276.333333 5666 93.227333 830 6207 3 chr3B.!!$F3 5377
5 TraesCS3D01G159000 chr3B 182350191 182350975 784 False 563.250000 1046 96.143500 7110 7919 2 chr3B.!!$F5 809
6 TraesCS3D01G159000 chr3B 182342755 182343822 1067 False 447.500000 580 90.661000 6455 7110 2 chr3B.!!$F4 655
7 TraesCS3D01G159000 chr3B 762118876 762119617 741 False 246.000000 327 89.370000 107 798 2 chr3B.!!$F6 691
8 TraesCS3D01G159000 chr3A 7573481 7574420 939 True 1373.000000 1373 93.085000 1678 2614 1 chr3A.!!$R2 936
9 TraesCS3D01G159000 chr3A 140003580 140014783 11203 False 665.615385 2723 93.429000 792 7951 13 chr3A.!!$F1 7159
10 TraesCS3D01G159000 chr3A 476400886 476401479 593 True 485.500000 760 94.338000 1 799 2 chr3A.!!$R5 798
11 TraesCS3D01G159000 chr2D 155468558 155469668 1110 True 1592.000000 1592 92.799000 1677 2769 1 chr2D.!!$R1 1092
12 TraesCS3D01G159000 chr2D 642821575 642822327 752 True 1221.000000 1221 95.602000 1 773 1 chr2D.!!$R2 772
13 TraesCS3D01G159000 chr2D 642039389 642039916 527 False 566.000000 566 86.629000 2262 2772 1 chr2D.!!$F1 510
14 TraesCS3D01G159000 chr4D 52759602 52760707 1105 True 1589.000000 1589 92.857000 1677 2764 1 chr4D.!!$R1 1087
15 TraesCS3D01G159000 chr1D 427323888 427324995 1107 False 1480.000000 1480 91.081000 1677 2765 1 chr1D.!!$F5 1088
16 TraesCS3D01G159000 chr6A 51371849 51372953 1104 False 1448.000000 1448 90.605000 1676 2763 1 chr6A.!!$F1 1087
17 TraesCS3D01G159000 chr1A 581736908 581738012 1104 True 1448.000000 1448 90.605000 1678 2765 1 chr1A.!!$R1 1087
18 TraesCS3D01G159000 chr6D 411551879 411552987 1108 False 1432.000000 1432 90.270000 1677 2766 1 chr6D.!!$F2 1089
19 TraesCS3D01G159000 chr6D 20339993 20341057 1064 True 1376.000000 1376 90.253000 1677 2725 1 chr6D.!!$R1 1048
20 TraesCS3D01G159000 chr2A 469224328 469225412 1084 False 970.000000 970 83.394000 1698 2767 1 chr2A.!!$F2 1069
21 TraesCS3D01G159000 chr7A 503854284 503854875 591 True 483.500000 737 95.170000 1 798 2 chr7A.!!$R1 797
22 TraesCS3D01G159000 chr7B 662727856 662728610 754 False 346.000000 346 92.276000 4419 4661 2 chr7B.!!$F3 242
23 TraesCS3D01G159000 chr6B 4260219 4261311 1092 True 217.333333 335 90.137667 1 796 3 chr6B.!!$R2 795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 1460 0.102481 TGAAATAGGCGTCCGCTCTC 59.898 55.000 11.82 2.59 41.60 3.20 F
1563 3231 0.033504 CCCAATGGTCCGGATAGTCG 59.966 60.000 7.81 0.00 0.00 4.18 F
1985 3661 0.326618 ATTCTCCATCCAGTCCCCGT 60.327 55.000 0.00 0.00 0.00 5.28 F
2840 4569 0.390603 CCGCGGACATTTGAGGTGTA 60.391 55.000 24.07 0.00 0.00 2.90 F
3180 4912 1.805945 CGAGCGGGCACAGTAGTTC 60.806 63.158 0.00 0.00 0.00 3.01 F
4040 5818 0.872388 GTACTTTTCAGCACCACCCG 59.128 55.000 0.00 0.00 0.00 5.28 F
5007 7060 2.040278 AGTTCTGGGAAGCACTGCAATA 59.960 45.455 3.30 0.00 0.00 1.90 F
5505 7559 0.244721 GCCCTGACACAAATGGAAGC 59.755 55.000 0.00 0.00 0.00 3.86 F
6741 12624 3.321497 GCCTATGGCTTATTCTGACTCG 58.679 50.000 0.73 0.00 46.69 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2769 4498 1.153349 GGAGCCGGTCATCCAACTC 60.153 63.158 15.18 5.46 35.54 3.01 R
2771 4500 1.745489 GTGGAGCCGGTCATCCAAC 60.745 63.158 21.86 14.31 46.87 3.77 R
3637 5370 0.323629 TAACCTTTGTCTCCTGCCCG 59.676 55.000 0.00 0.00 0.00 6.13 R
3837 5570 0.604578 ATGCTGCACAAACACCATCC 59.395 50.000 3.57 0.00 0.00 3.51 R
4689 6731 4.971924 AGGTGAGGAGTAGCAATAGGAAAT 59.028 41.667 0.00 0.00 0.00 2.17 R
5481 7535 1.153524 ATTTGTGTCAGGGCCAGCA 59.846 52.632 6.18 0.00 0.00 4.41 R
6492 8723 4.341235 TGTGATGAACGGGAGAACCTATAG 59.659 45.833 0.00 0.00 36.97 1.31 R
7083 12977 2.959507 ACTGTTTTCCCTGCAACAAC 57.040 45.000 0.00 0.00 32.53 3.32 R
7961 14151 0.035036 TGTGTTCATCCGGCCGTAAA 59.965 50.000 26.12 9.71 0.00 2.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 410 6.658391 GCCCAGATAGCAGAGATCATAAAAAT 59.342 38.462 0.00 0.00 0.00 1.82
452 1041 3.608316 TTTTATGATTGTTGCAGGCCC 57.392 42.857 0.00 0.00 0.00 5.80
457 1046 0.681175 GATTGTTGCAGGCCCTGTTT 59.319 50.000 13.35 0.00 33.43 2.83
466 1055 2.825532 GCAGGCCCTGTTTAAGAATTCA 59.174 45.455 13.35 0.00 33.43 2.57
473 1062 5.506317 GCCCTGTTTAAGAATTCATCCGATG 60.506 44.000 8.44 1.55 0.00 3.84
489 1078 4.331968 TCCGATGAACCAGTTAATTTGCT 58.668 39.130 0.00 0.00 0.00 3.91
492 1081 5.163622 CCGATGAACCAGTTAATTTGCTGAT 60.164 40.000 9.62 0.75 34.87 2.90
609 1198 2.797278 CCCTTACTCGCCAGCCGAT 61.797 63.158 0.00 0.00 46.31 4.18
865 1460 0.102481 TGAAATAGGCGTCCGCTCTC 59.898 55.000 11.82 2.59 41.60 3.20
945 1541 7.148507 CGATTTCTATCTGATAATCCAAGTGCC 60.149 40.741 0.00 0.00 0.00 5.01
953 1549 2.134789 AATCCAAGTGCCCTCATCAC 57.865 50.000 0.00 0.00 34.80 3.06
987 1585 8.594881 AAAATCTGATAATCCAAGTACTAGCG 57.405 34.615 0.00 0.00 0.00 4.26
1421 3069 4.680237 CCCGAGAACCGCTGCACA 62.680 66.667 0.00 0.00 36.84 4.57
1422 3070 2.664851 CCGAGAACCGCTGCACAA 60.665 61.111 0.00 0.00 36.84 3.33
1423 3071 2.034879 CCGAGAACCGCTGCACAAT 61.035 57.895 0.00 0.00 36.84 2.71
1426 3074 1.726853 GAGAACCGCTGCACAATACT 58.273 50.000 0.00 0.00 0.00 2.12
1504 3154 1.682740 TTTTTCCCTCCAACACCGAC 58.317 50.000 0.00 0.00 0.00 4.79
1549 3199 4.489306 TTTTCAAAAACCCGAACCCAAT 57.511 36.364 0.00 0.00 0.00 3.16
1550 3200 3.460857 TTCAAAAACCCGAACCCAATG 57.539 42.857 0.00 0.00 0.00 2.82
1563 3231 0.033504 CCCAATGGTCCGGATAGTCG 59.966 60.000 7.81 0.00 0.00 4.18
1674 3343 5.049474 GTGATGCCTATTTGATGCATACGAA 60.049 40.000 0.00 0.08 45.20 3.85
1985 3661 0.326618 ATTCTCCATCCAGTCCCCGT 60.327 55.000 0.00 0.00 0.00 5.28
2094 3782 2.255252 GCTGTGATGCGGCGTTTT 59.745 55.556 9.37 0.00 39.99 2.43
2378 4069 2.333417 GGAGGACGACGCTGTCTGA 61.333 63.158 7.46 0.00 38.91 3.27
2521 4217 3.379445 CGCCGGACTGGTAGGTGT 61.379 66.667 5.05 0.00 41.21 4.16
2533 4229 0.688749 GTAGGTGTCCCATACCCGGT 60.689 60.000 0.00 0.00 39.05 5.28
2557 4253 1.551875 TCCTGGTTGGGACCTCAGA 59.448 57.895 0.00 0.00 46.66 3.27
2672 4401 7.381678 CGGTGGCTTTAGTCTTACTATTGTATC 59.618 40.741 0.00 0.00 29.64 2.24
2840 4569 0.390603 CCGCGGACATTTGAGGTGTA 60.391 55.000 24.07 0.00 0.00 2.90
3180 4912 1.805945 CGAGCGGGCACAGTAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
3192 4924 2.233922 ACAGTAGTTCGGTTGCTAGCAT 59.766 45.455 20.13 3.87 0.00 3.79
3221 4953 7.220875 GCGGAGATCTTACAAAATTTTCCATTC 59.779 37.037 0.00 0.00 0.00 2.67
3546 5278 4.607239 TCCTCGGTCCTCACTATTTAACT 58.393 43.478 0.00 0.00 0.00 2.24
3837 5570 3.367607 TCAAATTGCGAGGTTTGTTTCG 58.632 40.909 0.00 0.00 36.83 3.46
3886 5619 3.169908 TCACTTACAGGGTGCACTGATA 58.830 45.455 17.98 1.76 40.97 2.15
3932 5665 2.496070 TCAGGTCTACAGAAATGTCCCG 59.504 50.000 0.00 0.00 0.00 5.14
3945 5678 6.039717 CAGAAATGTCCCGTTGGAATTATGAT 59.960 38.462 0.00 0.00 44.07 2.45
4040 5818 0.872388 GTACTTTTCAGCACCACCCG 59.128 55.000 0.00 0.00 0.00 5.28
4214 5992 4.406003 GGGATCATGTAGTACCACTTCAGT 59.594 45.833 0.00 0.00 29.13 3.41
4689 6731 4.883585 CAGCCTTTCCTAATGCAACTCATA 59.116 41.667 0.00 0.00 34.33 2.15
4775 6817 7.011950 TGACAAATCTACCACACAACAGTTTAG 59.988 37.037 0.00 0.00 0.00 1.85
5007 7060 2.040278 AGTTCTGGGAAGCACTGCAATA 59.960 45.455 3.30 0.00 0.00 1.90
5101 7154 6.357367 TCCTAATCTAGGTTTGGAATTCAGC 58.643 40.000 15.50 0.00 46.32 4.26
5344 7398 6.500684 TTTATGGACTGAAGCTTCATTGAC 57.499 37.500 28.57 17.49 36.46 3.18
5481 7535 2.025416 TGGTGTACTAAGCATGGCCAAT 60.025 45.455 10.96 0.00 0.00 3.16
5505 7559 0.244721 GCCCTGACACAAATGGAAGC 59.755 55.000 0.00 0.00 0.00 3.86
5564 7618 9.875691 TCCTTAATATTCAATATGACAGGATCG 57.124 33.333 7.82 0.00 0.00 3.69
5822 7876 5.357878 TCAGTGTAGTAATACCCCACTAACG 59.642 44.000 10.83 2.54 34.77 3.18
5894 7948 4.510167 AGGATGTGGTTTAGATTCCTGG 57.490 45.455 0.00 0.00 0.00 4.45
5992 8046 7.286775 ACACTTACACCCAAAGTAACAATTGAT 59.713 33.333 13.59 2.25 35.44 2.57
6105 8161 8.032451 GGCATGTACAATGGTTAATAAACAGTT 58.968 33.333 0.00 0.00 37.34 3.16
6355 8586 8.587952 TGTACACGTCCTAATATTTCATCATG 57.412 34.615 0.00 0.00 0.00 3.07
6426 8657 4.273480 GCTGTTAGAGCTGTTGAAAAGTGA 59.727 41.667 0.00 0.00 45.21 3.41
6443 8674 5.774498 AAGTGAACCTTCCACATTTCTTC 57.226 39.130 0.00 0.00 37.01 2.87
6492 8723 5.954296 ATGCACATTCCATATTACAGCTC 57.046 39.130 0.00 0.00 0.00 4.09
6641 8903 9.746457 AAGAAGAGAATGGAAAATTAAGCTAGT 57.254 29.630 0.00 0.00 0.00 2.57
6741 12624 3.321497 GCCTATGGCTTATTCTGACTCG 58.679 50.000 0.73 0.00 46.69 4.18
7171 13065 4.637534 TGATTTACTCTTTCTCTGCCATGC 59.362 41.667 0.00 0.00 0.00 4.06
7187 13081 3.194861 CCATGCGAATCGGAAGTCTTTA 58.805 45.455 0.00 0.00 0.00 1.85
7243 13137 4.261994 GGTGGCAAAATATGTGTTGACAGT 60.262 41.667 0.23 0.00 43.33 3.55
7244 13138 5.288804 GTGGCAAAATATGTGTTGACAGTT 58.711 37.500 0.23 0.00 43.33 3.16
7582 13570 4.488126 TCAGTTTTCAAAGAATCCGCAG 57.512 40.909 0.00 0.00 0.00 5.18
7640 13631 1.716028 ATTAATGGGGAGGGGCGGTC 61.716 60.000 0.00 0.00 0.00 4.79
7648 13711 0.826256 GGAGGGGCGGTCAAAAGTTT 60.826 55.000 0.00 0.00 0.00 2.66
7649 13712 1.037493 GAGGGGCGGTCAAAAGTTTT 58.963 50.000 0.00 0.00 0.00 2.43
7709 13894 2.859526 TGCAAAATGTTTGTCTCGCA 57.140 40.000 2.92 0.00 0.00 5.10
7722 13907 1.009675 CTCGCAGTGGTGTTTGTGC 60.010 57.895 0.00 0.00 0.00 4.57
7828 14015 0.250295 TTATATGGGCTGCCTGCGTC 60.250 55.000 19.68 1.35 44.05 5.19
7889 14076 3.375610 TGCTTTTTCTGCAACGAAGTGTA 59.624 39.130 0.00 0.00 45.00 2.90
7951 14141 3.160269 CCTCCCAGCTGTGAATTCTTTT 58.840 45.455 13.81 0.00 0.00 2.27
7952 14142 3.192212 CCTCCCAGCTGTGAATTCTTTTC 59.808 47.826 13.81 0.00 0.00 2.29
7953 14143 3.822735 CTCCCAGCTGTGAATTCTTTTCA 59.177 43.478 13.81 0.79 0.00 2.69
7954 14144 4.214310 TCCCAGCTGTGAATTCTTTTCAA 58.786 39.130 13.81 0.00 0.00 2.69
7955 14145 4.037923 TCCCAGCTGTGAATTCTTTTCAAC 59.962 41.667 13.81 0.00 0.00 3.18
7956 14146 3.976942 CCAGCTGTGAATTCTTTTCAACG 59.023 43.478 13.81 0.00 0.00 4.10
7957 14147 4.261155 CCAGCTGTGAATTCTTTTCAACGA 60.261 41.667 13.81 0.00 0.00 3.85
7958 14148 5.273170 CAGCTGTGAATTCTTTTCAACGAA 58.727 37.500 5.25 0.00 0.00 3.85
7959 14149 5.397534 CAGCTGTGAATTCTTTTCAACGAAG 59.602 40.000 5.25 0.00 0.00 3.79
7971 14161 3.955775 ACGAAGTTTTACGGCCGG 58.044 55.556 31.76 11.88 37.78 6.13
7972 14162 1.367102 ACGAAGTTTTACGGCCGGA 59.633 52.632 31.76 21.43 37.78 5.14
7973 14163 0.037046 ACGAAGTTTTACGGCCGGAT 60.037 50.000 31.76 12.49 37.78 4.18
7974 14164 0.372334 CGAAGTTTTACGGCCGGATG 59.628 55.000 31.76 0.90 0.00 3.51
7975 14165 1.729284 GAAGTTTTACGGCCGGATGA 58.271 50.000 31.76 10.39 0.00 2.92
7976 14166 2.078392 GAAGTTTTACGGCCGGATGAA 58.922 47.619 31.76 16.47 0.00 2.57
7977 14167 1.445871 AGTTTTACGGCCGGATGAAC 58.554 50.000 31.76 26.45 0.00 3.18
7978 14168 1.158434 GTTTTACGGCCGGATGAACA 58.842 50.000 31.76 1.00 0.00 3.18
7979 14169 1.135888 GTTTTACGGCCGGATGAACAC 60.136 52.381 31.76 16.11 0.00 3.32
7980 14170 0.035036 TTTACGGCCGGATGAACACA 59.965 50.000 31.76 0.00 0.00 3.72
7981 14171 0.250793 TTACGGCCGGATGAACACAT 59.749 50.000 31.76 6.43 0.00 3.21
7982 14172 0.461163 TACGGCCGGATGAACACATG 60.461 55.000 31.76 0.00 0.00 3.21
7983 14173 2.472059 CGGCCGGATGAACACATGG 61.472 63.158 20.10 0.00 0.00 3.66
7984 14174 2.120909 GGCCGGATGAACACATGGG 61.121 63.158 5.05 0.00 0.00 4.00
7985 14175 1.077787 GCCGGATGAACACATGGGA 60.078 57.895 5.05 0.00 0.00 4.37
7986 14176 1.097547 GCCGGATGAACACATGGGAG 61.098 60.000 5.05 0.00 0.00 4.30
7987 14177 0.253044 CCGGATGAACACATGGGAGT 59.747 55.000 0.00 0.00 0.00 3.85
7988 14178 1.340017 CCGGATGAACACATGGGAGTT 60.340 52.381 0.00 0.29 0.00 3.01
7989 14179 1.739466 CGGATGAACACATGGGAGTTG 59.261 52.381 0.00 0.00 0.00 3.16
7990 14180 2.094675 GGATGAACACATGGGAGTTGG 58.905 52.381 0.00 0.00 0.00 3.77
7991 14181 2.555227 GGATGAACACATGGGAGTTGGT 60.555 50.000 0.00 0.00 0.00 3.67
7992 14182 2.270352 TGAACACATGGGAGTTGGTC 57.730 50.000 0.00 0.00 0.00 4.02
7993 14183 1.492599 TGAACACATGGGAGTTGGTCA 59.507 47.619 0.00 0.00 0.00 4.02
7994 14184 2.092158 TGAACACATGGGAGTTGGTCAA 60.092 45.455 0.00 0.00 0.00 3.18
7995 14185 1.981256 ACACATGGGAGTTGGTCAAC 58.019 50.000 0.00 5.76 41.45 3.18
7996 14186 0.874390 CACATGGGAGTTGGTCAACG 59.126 55.000 8.02 0.00 45.50 4.10
7997 14187 0.889186 ACATGGGAGTTGGTCAACGC 60.889 55.000 8.68 8.68 45.50 4.84
7998 14188 1.671054 ATGGGAGTTGGTCAACGCG 60.671 57.895 3.53 3.53 45.50 6.01
7999 14189 3.047877 GGGAGTTGGTCAACGCGG 61.048 66.667 12.47 0.00 45.50 6.46
8000 14190 2.280592 GGAGTTGGTCAACGCGGT 60.281 61.111 12.47 0.00 45.50 5.68
8001 14191 1.005867 GGAGTTGGTCAACGCGGTA 60.006 57.895 12.47 0.00 45.50 4.02
8002 14192 0.600782 GGAGTTGGTCAACGCGGTAA 60.601 55.000 12.47 0.00 45.50 2.85
8003 14193 1.435577 GAGTTGGTCAACGCGGTAAT 58.564 50.000 12.47 0.00 45.50 1.89
8004 14194 1.127951 GAGTTGGTCAACGCGGTAATG 59.872 52.381 12.47 3.92 45.50 1.90
8005 14195 0.453782 GTTGGTCAACGCGGTAATGC 60.454 55.000 12.47 0.00 0.00 3.56
8006 14196 1.579084 TTGGTCAACGCGGTAATGCC 61.579 55.000 12.47 4.69 0.00 4.40
8007 14197 2.757056 GGTCAACGCGGTAATGCCC 61.757 63.158 12.47 0.00 0.00 5.36
8008 14198 2.036006 GTCAACGCGGTAATGCCCA 61.036 57.895 12.47 0.00 0.00 5.36
8009 14199 1.302591 TCAACGCGGTAATGCCCAA 60.303 52.632 12.47 0.00 0.00 4.12
8010 14200 0.889638 TCAACGCGGTAATGCCCAAA 60.890 50.000 12.47 0.00 0.00 3.28
8011 14201 0.172352 CAACGCGGTAATGCCCAAAT 59.828 50.000 12.47 0.00 0.00 2.32
8012 14202 0.454196 AACGCGGTAATGCCCAAATC 59.546 50.000 12.47 0.00 0.00 2.17
8013 14203 1.358759 CGCGGTAATGCCCAAATCC 59.641 57.895 0.00 0.00 0.00 3.01
8014 14204 1.380403 CGCGGTAATGCCCAAATCCA 61.380 55.000 0.00 0.00 0.00 3.41
8015 14205 0.385390 GCGGTAATGCCCAAATCCAG 59.615 55.000 0.00 0.00 0.00 3.86
8016 14206 1.032014 CGGTAATGCCCAAATCCAGG 58.968 55.000 0.00 0.00 0.00 4.45
8017 14207 1.409521 CGGTAATGCCCAAATCCAGGA 60.410 52.381 0.00 0.00 0.00 3.86
8018 14208 2.752829 CGGTAATGCCCAAATCCAGGAT 60.753 50.000 0.00 0.00 0.00 3.24
8019 14209 3.308401 GGTAATGCCCAAATCCAGGATT 58.692 45.455 9.12 9.12 33.25 3.01
8020 14210 3.711190 GGTAATGCCCAAATCCAGGATTT 59.289 43.478 20.35 20.35 42.14 2.17
8021 14211 4.202253 GGTAATGCCCAAATCCAGGATTTC 60.202 45.833 22.79 13.43 39.82 2.17
8022 14212 1.864669 TGCCCAAATCCAGGATTTCC 58.135 50.000 22.79 14.73 39.82 3.13
8023 14213 0.746659 GCCCAAATCCAGGATTTCCG 59.253 55.000 22.79 16.35 39.82 4.30
8024 14214 1.684869 GCCCAAATCCAGGATTTCCGA 60.685 52.381 22.79 0.00 39.82 4.55
8025 14215 2.301346 CCCAAATCCAGGATTTCCGAG 58.699 52.381 22.79 12.55 39.82 4.63
8026 14216 2.092429 CCCAAATCCAGGATTTCCGAGA 60.092 50.000 22.79 0.00 39.82 4.04
8027 14217 2.945668 CCAAATCCAGGATTTCCGAGAC 59.054 50.000 22.79 0.00 39.82 3.36
8028 14218 3.609853 CAAATCCAGGATTTCCGAGACA 58.390 45.455 22.79 0.00 39.82 3.41
8029 14219 2.990066 ATCCAGGATTTCCGAGACAC 57.010 50.000 0.00 0.00 42.08 3.67
8030 14220 1.639722 TCCAGGATTTCCGAGACACA 58.360 50.000 0.00 0.00 42.08 3.72
8031 14221 1.974957 TCCAGGATTTCCGAGACACAA 59.025 47.619 0.00 0.00 42.08 3.33
8032 14222 2.571653 TCCAGGATTTCCGAGACACAAT 59.428 45.455 0.00 0.00 42.08 2.71
8033 14223 3.009033 TCCAGGATTTCCGAGACACAATT 59.991 43.478 0.00 0.00 42.08 2.32
8034 14224 3.127548 CCAGGATTTCCGAGACACAATTG 59.872 47.826 3.24 3.24 42.08 2.32
8035 14225 4.002982 CAGGATTTCCGAGACACAATTGA 58.997 43.478 13.59 0.00 42.08 2.57
8036 14226 4.637534 CAGGATTTCCGAGACACAATTGAT 59.362 41.667 13.59 0.00 42.08 2.57
8037 14227 4.637534 AGGATTTCCGAGACACAATTGATG 59.362 41.667 13.59 9.27 42.08 3.07
8038 14228 4.396166 GGATTTCCGAGACACAATTGATGT 59.604 41.667 13.59 12.48 45.34 3.06
8039 14229 5.106157 GGATTTCCGAGACACAATTGATGTT 60.106 40.000 13.59 4.48 41.46 2.71
8040 14230 5.766150 TTTCCGAGACACAATTGATGTTT 57.234 34.783 13.59 8.04 41.46 2.83
8041 14231 4.747540 TCCGAGACACAATTGATGTTTG 57.252 40.909 13.59 1.64 41.46 2.93
8042 14232 3.058293 TCCGAGACACAATTGATGTTTGC 60.058 43.478 13.59 2.05 41.46 3.68
8043 14233 3.304592 CCGAGACACAATTGATGTTTGCA 60.305 43.478 13.59 0.00 41.46 4.08
8044 14234 4.478699 CGAGACACAATTGATGTTTGCAT 58.521 39.130 13.59 0.00 41.46 3.96
8045 14235 4.322539 CGAGACACAATTGATGTTTGCATG 59.677 41.667 13.59 0.00 41.46 4.06
8046 14236 3.991773 AGACACAATTGATGTTTGCATGC 59.008 39.130 13.59 11.82 41.46 4.06
8047 14237 3.991773 GACACAATTGATGTTTGCATGCT 59.008 39.130 20.33 0.00 41.46 3.79
8048 14238 3.743911 ACACAATTGATGTTTGCATGCTG 59.256 39.130 20.33 6.97 41.46 4.41
8049 14239 3.743911 CACAATTGATGTTTGCATGCTGT 59.256 39.130 20.33 7.66 41.46 4.40
8050 14240 4.212425 CACAATTGATGTTTGCATGCTGTT 59.788 37.500 20.33 0.00 41.46 3.16
8051 14241 4.212425 ACAATTGATGTTTGCATGCTGTTG 59.788 37.500 20.33 11.70 40.06 3.33
8052 14242 2.442212 TGATGTTTGCATGCTGTTGG 57.558 45.000 20.33 0.00 35.07 3.77
8053 14243 1.962100 TGATGTTTGCATGCTGTTGGA 59.038 42.857 20.33 0.00 35.07 3.53
8054 14244 2.288334 TGATGTTTGCATGCTGTTGGAC 60.288 45.455 20.33 8.67 35.07 4.02
8055 14245 1.401761 TGTTTGCATGCTGTTGGACT 58.598 45.000 20.33 0.00 0.00 3.85
8056 14246 1.755959 TGTTTGCATGCTGTTGGACTT 59.244 42.857 20.33 0.00 0.00 3.01
8057 14247 2.954989 TGTTTGCATGCTGTTGGACTTA 59.045 40.909 20.33 0.00 0.00 2.24
8058 14248 3.004629 TGTTTGCATGCTGTTGGACTTAG 59.995 43.478 20.33 0.00 0.00 2.18
8059 14249 1.825090 TGCATGCTGTTGGACTTAGG 58.175 50.000 20.33 0.00 0.00 2.69
8060 14250 0.453390 GCATGCTGTTGGACTTAGGC 59.547 55.000 11.37 0.00 0.00 3.93
8061 14251 1.952367 GCATGCTGTTGGACTTAGGCT 60.952 52.381 11.37 0.00 0.00 4.58
8062 14252 2.680805 GCATGCTGTTGGACTTAGGCTA 60.681 50.000 11.37 0.00 0.00 3.93
8063 14253 3.813443 CATGCTGTTGGACTTAGGCTAT 58.187 45.455 0.00 0.00 0.00 2.97
8064 14254 4.743651 GCATGCTGTTGGACTTAGGCTATA 60.744 45.833 11.37 0.00 0.00 1.31
8065 14255 5.368145 CATGCTGTTGGACTTAGGCTATAA 58.632 41.667 0.00 0.00 0.00 0.98
8066 14256 5.023533 TGCTGTTGGACTTAGGCTATAAG 57.976 43.478 0.00 0.00 0.00 1.73
8067 14257 4.141711 TGCTGTTGGACTTAGGCTATAAGG 60.142 45.833 12.04 0.00 0.00 2.69
8068 14258 4.743955 GCTGTTGGACTTAGGCTATAAGGG 60.744 50.000 12.04 0.00 0.00 3.95
8069 14259 3.135895 TGTTGGACTTAGGCTATAAGGGC 59.864 47.826 12.04 5.52 0.00 5.19
8077 14267 2.863401 GGCTATAAGGGCCGTTTTTG 57.137 50.000 17.16 10.58 40.19 2.44
8078 14268 1.407618 GGCTATAAGGGCCGTTTTTGG 59.592 52.381 17.16 7.79 40.19 3.28
8079 14269 2.371306 GCTATAAGGGCCGTTTTTGGA 58.629 47.619 17.16 0.00 0.00 3.53
8080 14270 2.098607 GCTATAAGGGCCGTTTTTGGAC 59.901 50.000 17.16 0.00 35.71 4.02
8081 14271 2.597578 ATAAGGGCCGTTTTTGGACT 57.402 45.000 17.16 0.00 37.14 3.85
8082 14272 2.368311 TAAGGGCCGTTTTTGGACTT 57.632 45.000 17.16 3.09 37.14 3.01
8083 14273 1.491668 AAGGGCCGTTTTTGGACTTT 58.508 45.000 4.45 0.00 37.14 2.66
8084 14274 1.491668 AGGGCCGTTTTTGGACTTTT 58.508 45.000 0.00 0.00 37.14 2.27
8085 14275 2.668625 AGGGCCGTTTTTGGACTTTTA 58.331 42.857 0.00 0.00 37.14 1.52
8086 14276 3.032459 AGGGCCGTTTTTGGACTTTTAA 58.968 40.909 0.00 0.00 37.14 1.52
8087 14277 3.069016 AGGGCCGTTTTTGGACTTTTAAG 59.931 43.478 0.00 0.00 37.14 1.85
8088 14278 3.068448 GGGCCGTTTTTGGACTTTTAAGA 59.932 43.478 0.00 0.00 37.14 2.10
8089 14279 4.441773 GGGCCGTTTTTGGACTTTTAAGAA 60.442 41.667 0.00 0.00 37.14 2.52
8090 14280 4.743151 GGCCGTTTTTGGACTTTTAAGAAG 59.257 41.667 0.00 0.00 32.64 2.85
8091 14281 5.450826 GGCCGTTTTTGGACTTTTAAGAAGA 60.451 40.000 0.00 0.00 32.64 2.87
8092 14282 6.037726 GCCGTTTTTGGACTTTTAAGAAGAA 58.962 36.000 0.00 0.00 0.00 2.52
8093 14283 6.198403 GCCGTTTTTGGACTTTTAAGAAGAAG 59.802 38.462 0.00 0.00 0.00 2.85
8094 14284 6.695713 CCGTTTTTGGACTTTTAAGAAGAAGG 59.304 38.462 0.00 0.00 0.00 3.46
8095 14285 7.255569 CGTTTTTGGACTTTTAAGAAGAAGGT 58.744 34.615 0.00 0.00 0.00 3.50
8096 14286 8.400186 CGTTTTTGGACTTTTAAGAAGAAGGTA 58.600 33.333 0.00 0.00 0.00 3.08
8097 14287 9.731819 GTTTTTGGACTTTTAAGAAGAAGGTAG 57.268 33.333 0.00 0.00 0.00 3.18
8098 14288 7.506328 TTTGGACTTTTAAGAAGAAGGTAGC 57.494 36.000 0.00 0.00 0.00 3.58
8099 14289 6.182507 TGGACTTTTAAGAAGAAGGTAGCA 57.817 37.500 0.00 0.00 0.00 3.49
8100 14290 6.231211 TGGACTTTTAAGAAGAAGGTAGCAG 58.769 40.000 0.00 0.00 0.00 4.24
8101 14291 5.644206 GGACTTTTAAGAAGAAGGTAGCAGG 59.356 44.000 0.00 0.00 0.00 4.85
8102 14292 5.561679 ACTTTTAAGAAGAAGGTAGCAGGG 58.438 41.667 0.00 0.00 0.00 4.45
8103 14293 4.569719 TTTAAGAAGAAGGTAGCAGGGG 57.430 45.455 0.00 0.00 0.00 4.79
8104 14294 1.290134 AAGAAGAAGGTAGCAGGGGG 58.710 55.000 0.00 0.00 0.00 5.40
8105 14295 0.417841 AGAAGAAGGTAGCAGGGGGA 59.582 55.000 0.00 0.00 0.00 4.81
8106 14296 1.203440 AGAAGAAGGTAGCAGGGGGAA 60.203 52.381 0.00 0.00 0.00 3.97
8107 14297 0.992695 AAGAAGGTAGCAGGGGGAAC 59.007 55.000 0.00 0.00 0.00 3.62
8108 14298 0.119358 AGAAGGTAGCAGGGGGAACT 59.881 55.000 0.00 0.00 0.00 3.01
8109 14299 0.992695 GAAGGTAGCAGGGGGAACTT 59.007 55.000 0.00 0.00 0.00 2.66
8110 14300 1.354705 GAAGGTAGCAGGGGGAACTTT 59.645 52.381 0.00 0.00 0.00 2.66
8111 14301 0.992695 AGGTAGCAGGGGGAACTTTC 59.007 55.000 0.00 0.00 0.00 2.62
8112 14302 0.696501 GGTAGCAGGGGGAACTTTCA 59.303 55.000 0.00 0.00 0.00 2.69
8113 14303 1.613520 GGTAGCAGGGGGAACTTTCAC 60.614 57.143 0.00 0.00 0.00 3.18
8114 14304 1.351350 GTAGCAGGGGGAACTTTCACT 59.649 52.381 0.00 0.00 0.00 3.41
8115 14305 1.742308 AGCAGGGGGAACTTTCACTA 58.258 50.000 0.00 0.00 0.00 2.74
8116 14306 2.062636 AGCAGGGGGAACTTTCACTAA 58.937 47.619 0.00 0.00 0.00 2.24
8117 14307 2.040412 AGCAGGGGGAACTTTCACTAAG 59.960 50.000 0.00 0.00 39.87 2.18
8118 14308 2.039879 GCAGGGGGAACTTTCACTAAGA 59.960 50.000 0.00 0.00 37.30 2.10
8119 14309 3.870299 GCAGGGGGAACTTTCACTAAGAG 60.870 52.174 0.00 0.00 37.30 2.85
8120 14310 3.328050 CAGGGGGAACTTTCACTAAGAGT 59.672 47.826 0.00 0.00 37.30 3.24
8121 14311 4.530946 CAGGGGGAACTTTCACTAAGAGTA 59.469 45.833 0.00 0.00 37.30 2.59
8122 14312 5.012768 CAGGGGGAACTTTCACTAAGAGTAA 59.987 44.000 0.00 0.00 37.30 2.24
8123 14313 5.248705 AGGGGGAACTTTCACTAAGAGTAAG 59.751 44.000 0.00 0.00 37.30 2.34
8124 14314 5.489249 GGGGAACTTTCACTAAGAGTAAGG 58.511 45.833 0.00 0.00 37.30 2.69
8125 14315 5.012871 GGGGAACTTTCACTAAGAGTAAGGT 59.987 44.000 0.00 0.00 37.30 3.50
8126 14316 6.465464 GGGGAACTTTCACTAAGAGTAAGGTT 60.465 42.308 0.00 0.00 37.30 3.50
8127 14317 6.427242 GGGAACTTTCACTAAGAGTAAGGTTG 59.573 42.308 0.00 0.00 37.30 3.77
8128 14318 6.427242 GGAACTTTCACTAAGAGTAAGGTTGG 59.573 42.308 0.00 0.00 37.30 3.77
8129 14319 6.742559 ACTTTCACTAAGAGTAAGGTTGGA 57.257 37.500 0.00 0.00 37.30 3.53
8130 14320 7.317722 ACTTTCACTAAGAGTAAGGTTGGAT 57.682 36.000 0.00 0.00 37.30 3.41
8131 14321 8.431910 ACTTTCACTAAGAGTAAGGTTGGATA 57.568 34.615 0.00 0.00 37.30 2.59
8132 14322 8.532819 ACTTTCACTAAGAGTAAGGTTGGATAG 58.467 37.037 0.00 0.00 37.30 2.08
8133 14323 7.419711 TTCACTAAGAGTAAGGTTGGATAGG 57.580 40.000 0.00 0.00 0.00 2.57
8134 14324 5.897824 TCACTAAGAGTAAGGTTGGATAGGG 59.102 44.000 0.00 0.00 0.00 3.53
8135 14325 4.654724 ACTAAGAGTAAGGTTGGATAGGGC 59.345 45.833 0.00 0.00 0.00 5.19
8136 14326 3.130734 AGAGTAAGGTTGGATAGGGCA 57.869 47.619 0.00 0.00 0.00 5.36
8137 14327 2.772515 AGAGTAAGGTTGGATAGGGCAC 59.227 50.000 0.00 0.00 0.00 5.01
8138 14328 2.772515 GAGTAAGGTTGGATAGGGCACT 59.227 50.000 0.00 0.00 0.00 4.40
8139 14329 3.965347 GAGTAAGGTTGGATAGGGCACTA 59.035 47.826 0.00 0.00 0.00 2.74
8140 14330 3.967987 AGTAAGGTTGGATAGGGCACTAG 59.032 47.826 0.40 0.00 31.54 2.57
8141 14331 1.807814 AGGTTGGATAGGGCACTAGG 58.192 55.000 0.40 0.00 31.54 3.02
8142 14332 1.294068 AGGTTGGATAGGGCACTAGGA 59.706 52.381 0.40 0.00 31.54 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 410 5.130477 GGACACCTTACCCATGATTCTTCTA 59.870 44.000 0.00 0.00 0.00 2.10
160 413 3.053619 GGGACACCTTACCCATGATTCTT 60.054 47.826 0.00 0.00 44.96 2.52
466 1055 4.949856 AGCAAATTAACTGGTTCATCGGAT 59.050 37.500 0.00 0.00 0.00 4.18
473 1062 7.706607 GGGATTAATCAGCAAATTAACTGGTTC 59.293 37.037 17.07 0.00 38.22 3.62
484 1073 5.353394 ACGAGTAGGGATTAATCAGCAAA 57.647 39.130 17.07 0.00 0.00 3.68
515 1104 5.518848 TTTATCGGTTTATCGGCTACTCA 57.481 39.130 0.00 0.00 0.00 3.41
609 1198 1.135489 CGTTAACTGGTAGCTGCTCGA 60.135 52.381 4.91 0.00 0.00 4.04
865 1460 1.659954 GCGCACTAGAGGCATCTCG 60.660 63.158 3.06 3.12 44.47 4.04
945 1541 8.783833 TCAGATTTTCTTTCTTAGTGATGAGG 57.216 34.615 0.00 0.00 0.00 3.86
977 1575 1.549170 CAGGGTTGGTCGCTAGTACTT 59.451 52.381 0.00 0.00 37.57 2.24
987 1585 2.040544 CGCCATGTCAGGGTTGGTC 61.041 63.158 5.25 0.00 32.90 4.02
1201 1799 6.915300 CGAGAATGGATATATTAAGCTCTCGG 59.085 42.308 18.11 7.80 38.61 4.63
1246 1927 5.105797 GCCAAGAATGTCAACCATGTAATCA 60.106 40.000 0.00 0.00 32.82 2.57
1406 3054 0.370273 GTATTGTGCAGCGGTTCTCG 59.630 55.000 0.00 0.00 42.76 4.04
1415 3063 3.780902 TCGGACATACAGTATTGTGCAG 58.219 45.455 0.34 0.00 38.23 4.41
1416 3064 3.878160 TCGGACATACAGTATTGTGCA 57.122 42.857 0.34 0.00 38.23 4.57
1419 3067 4.039245 CCCTGATCGGACATACAGTATTGT 59.961 45.833 2.08 0.00 36.71 2.71
1420 3068 4.560128 CCCTGATCGGACATACAGTATTG 58.440 47.826 2.08 0.00 33.16 1.90
1421 3069 3.006967 GCCCTGATCGGACATACAGTATT 59.993 47.826 2.08 0.00 33.16 1.89
1422 3070 2.563179 GCCCTGATCGGACATACAGTAT 59.437 50.000 2.08 0.00 33.16 2.12
1423 3071 1.961394 GCCCTGATCGGACATACAGTA 59.039 52.381 2.08 0.00 33.16 2.74
1426 3074 1.134521 GTTGCCCTGATCGGACATACA 60.135 52.381 2.08 0.00 33.16 2.29
1455 3103 2.664436 CGCTTGGTCCGGACGTTTC 61.664 63.158 27.68 14.63 0.00 2.78
1499 3149 0.392461 CCGGATGTTTGATGGTCGGT 60.392 55.000 0.00 0.00 0.00 4.69
1503 3153 0.323629 ACGTCCGGATGTTTGATGGT 59.676 50.000 23.91 0.00 0.00 3.55
1504 3154 1.006832 GACGTCCGGATGTTTGATGG 58.993 55.000 29.43 3.22 0.00 3.51
1530 3180 2.103263 CCATTGGGTTCGGGTTTTTGAA 59.897 45.455 0.00 0.00 0.00 2.69
1563 3231 0.037975 CAACTGACAATGGGCAAGCC 60.038 55.000 1.52 1.52 0.00 4.35
1674 3343 1.672356 GAAGACGCAGCCACCACAT 60.672 57.895 0.00 0.00 0.00 3.21
1796 3468 2.227036 CCACAGGGGCTCCTCTGTT 61.227 63.158 18.33 2.24 42.67 3.16
2094 3782 3.159298 GGCGATGCCTTCAAGAAGA 57.841 52.632 11.25 0.00 46.69 2.87
2328 4019 2.969238 CTCGCACATCGGATGCCC 60.969 66.667 17.61 7.97 40.09 5.36
2521 4217 1.381599 ACGCTTACCGGGTATGGGA 60.382 57.895 30.92 9.51 42.52 4.37
2533 4229 1.675219 GTCCCAACCAGGACGCTTA 59.325 57.895 0.00 0.00 46.57 3.09
2557 4253 5.358160 GCAGCCAAACCTAAACATCTAAGAT 59.642 40.000 0.00 0.00 0.00 2.40
2672 4401 5.811399 TTCACACAAGACCTTACAAAGTG 57.189 39.130 0.00 0.00 0.00 3.16
2769 4498 1.153349 GGAGCCGGTCATCCAACTC 60.153 63.158 15.18 5.46 35.54 3.01
2770 4499 1.918293 TGGAGCCGGTCATCCAACT 60.918 57.895 19.07 0.00 42.61 3.16
2771 4500 1.745489 GTGGAGCCGGTCATCCAAC 60.745 63.158 21.86 14.31 46.87 3.77
2824 4553 5.049060 TCAAAACATACACCTCAAATGTCCG 60.049 40.000 0.00 0.00 32.80 4.79
2840 4569 6.206634 ACTCCAATCGTTGTACATCAAAACAT 59.793 34.615 0.00 0.00 37.81 2.71
3180 4912 1.956170 CCGCCTATGCTAGCAACCG 60.956 63.158 23.54 19.60 34.43 4.44
3192 4924 6.317893 GGAAAATTTTGTAAGATCTCCGCCTA 59.682 38.462 8.47 0.00 0.00 3.93
3206 4938 5.176407 TCGTGTCGAATGGAAAATTTTGT 57.824 34.783 8.47 0.00 31.06 2.83
3221 4953 4.272748 TGTCTAAGACCTATGATCGTGTCG 59.727 45.833 0.00 0.00 33.04 4.35
3546 5278 6.491394 CAACTCCTACAAATTTGTTGTCGAA 58.509 36.000 27.66 8.91 42.35 3.71
3560 5292 3.497332 ACTGACACTAGCAACTCCTACA 58.503 45.455 0.00 0.00 0.00 2.74
3603 5336 4.125703 GAGCAACAATATCTGAGTCCAGG 58.874 47.826 0.00 0.00 40.76 4.45
3636 5369 2.045926 CCTTTGTCTCCTGCCCGG 60.046 66.667 0.00 0.00 0.00 5.73
3637 5370 0.323629 TAACCTTTGTCTCCTGCCCG 59.676 55.000 0.00 0.00 0.00 6.13
3837 5570 0.604578 ATGCTGCACAAACACCATCC 59.395 50.000 3.57 0.00 0.00 3.51
3919 5652 2.649531 TTCCAACGGGACATTTCTGT 57.350 45.000 0.00 0.00 44.89 3.41
3932 5665 4.402155 TGCACCCAGAATCATAATTCCAAC 59.598 41.667 0.00 0.00 41.97 3.77
3945 5678 7.833682 TGAAATAGAAATAGAATGCACCCAGAA 59.166 33.333 0.00 0.00 0.00 3.02
4305 6084 6.269769 TGGATGAGCCATACAGTCATAATACA 59.730 38.462 0.00 0.00 43.33 2.29
4689 6731 4.971924 AGGTGAGGAGTAGCAATAGGAAAT 59.028 41.667 0.00 0.00 0.00 2.17
5101 7154 8.728088 AAACAAGTTTGCTGATAAATAAGTCG 57.272 30.769 0.00 0.00 0.00 4.18
5344 7398 9.630098 AAAATTCAATACACAACTCTATGCAAG 57.370 29.630 0.00 0.00 0.00 4.01
5481 7535 1.153524 ATTTGTGTCAGGGCCAGCA 59.846 52.632 6.18 0.00 0.00 4.41
5505 7559 4.431809 TCACAGTGCAAATGAAAAACTGG 58.568 39.130 7.15 0.00 42.00 4.00
5556 7610 4.618920 AGTGACCTAAAAACGATCCTGT 57.381 40.909 0.00 0.00 0.00 4.00
5564 7618 7.207383 AGTTTGGCAAATAGTGACCTAAAAAC 58.793 34.615 16.74 0.00 32.17 2.43
5822 7876 9.129209 GAGTAATGGTTTTTGTGAAGCTAATTC 57.871 33.333 0.00 0.00 38.50 2.17
5894 7948 7.228706 TGAAGGATTAAAGTTTTCTGTCAGGAC 59.771 37.037 0.00 0.00 0.00 3.85
6110 8166 8.958119 TTTCTAGATTACGTGGCAGATTTAAT 57.042 30.769 0.00 0.00 0.00 1.40
6207 8438 6.606796 ACAATATCCCTCACAACATATTTGCA 59.393 34.615 0.00 0.00 0.00 4.08
6208 8439 7.042797 ACAATATCCCTCACAACATATTTGC 57.957 36.000 0.00 0.00 0.00 3.68
6209 8440 8.137437 GGAACAATATCCCTCACAACATATTTG 58.863 37.037 0.00 0.00 33.05 2.32
6210 8441 8.061304 AGGAACAATATCCCTCACAACATATTT 58.939 33.333 0.00 0.00 40.59 1.40
6211 8442 7.586349 AGGAACAATATCCCTCACAACATATT 58.414 34.615 0.00 0.00 40.59 1.28
6212 8443 7.154191 AGGAACAATATCCCTCACAACATAT 57.846 36.000 0.00 0.00 40.59 1.78
6213 8444 6.575244 AGGAACAATATCCCTCACAACATA 57.425 37.500 0.00 0.00 40.59 2.29
6214 8445 5.456921 AGGAACAATATCCCTCACAACAT 57.543 39.130 0.00 0.00 40.59 2.71
6215 8446 4.927267 AGGAACAATATCCCTCACAACA 57.073 40.909 0.00 0.00 40.59 3.33
6216 8447 6.650120 TCTTAGGAACAATATCCCTCACAAC 58.350 40.000 0.00 0.00 40.59 3.32
6217 8448 6.672218 TCTCTTAGGAACAATATCCCTCACAA 59.328 38.462 0.00 0.00 40.59 3.33
6218 8449 6.202331 TCTCTTAGGAACAATATCCCTCACA 58.798 40.000 0.00 0.00 40.59 3.58
6219 8450 6.732896 TCTCTTAGGAACAATATCCCTCAC 57.267 41.667 0.00 0.00 40.59 3.51
6220 8451 9.621239 ATTATCTCTTAGGAACAATATCCCTCA 57.379 33.333 0.00 0.00 40.59 3.86
6222 8453 9.851267 AGATTATCTCTTAGGAACAATATCCCT 57.149 33.333 0.00 0.00 40.59 4.20
6292 8523 7.666804 CCACATATGATAAATGATGAGGTGGAA 59.333 37.037 10.38 0.00 42.55 3.53
6426 8657 6.406961 GGAAACTTGAAGAAATGTGGAAGGTT 60.407 38.462 0.00 0.00 0.00 3.50
6492 8723 4.341235 TGTGATGAACGGGAGAACCTATAG 59.659 45.833 0.00 0.00 36.97 1.31
6641 8903 4.744795 TTTTGGCAGTTTTTAGGCTTCA 57.255 36.364 0.00 0.00 0.00 3.02
6741 12624 8.246180 TGTCTGAGAAAAGCATTCCATTATTTC 58.754 33.333 0.00 0.00 0.00 2.17
7052 12946 4.095610 CGTGAAACAAAACAAGGTCTCAC 58.904 43.478 0.00 0.00 35.74 3.51
7080 12974 3.181476 ACTGTTTTCCCTGCAACAACATC 60.181 43.478 0.00 0.00 32.53 3.06
7083 12977 2.959507 ACTGTTTTCCCTGCAACAAC 57.040 45.000 0.00 0.00 32.53 3.32
7171 13065 4.235360 ACACAGTAAAGACTTCCGATTCG 58.765 43.478 0.00 0.00 31.73 3.34
7187 13081 3.895232 ATGCTCTAAATCCGACACAGT 57.105 42.857 0.00 0.00 0.00 3.55
7243 13137 6.015688 ACACTCTAAGAATACCTTCGTGTCAA 60.016 38.462 0.00 0.00 36.79 3.18
7244 13138 5.475909 ACACTCTAAGAATACCTTCGTGTCA 59.524 40.000 0.00 0.00 36.79 3.58
7675 13760 5.359009 ACATTTTGCAAGTATCTAGCAGCAT 59.641 36.000 0.00 0.00 39.72 3.79
7709 13894 0.817013 CAACAGGCACAAACACCACT 59.183 50.000 0.00 0.00 0.00 4.00
7722 13907 1.523711 ACACACGCCAGACAACAGG 60.524 57.895 0.00 0.00 0.00 4.00
7828 14015 1.230635 CCACAACAACAGGAGGAGCG 61.231 60.000 0.00 0.00 0.00 5.03
7868 14055 2.797491 ACACTTCGTTGCAGAAAAAGC 58.203 42.857 0.00 0.00 0.00 3.51
7889 14076 2.357517 CAGTTCTTCCGCCGTGCT 60.358 61.111 0.00 0.00 0.00 4.40
7951 14141 0.860533 CGGCCGTAAAACTTCGTTGA 59.139 50.000 19.50 0.00 0.00 3.18
7952 14142 0.110554 CCGGCCGTAAAACTTCGTTG 60.111 55.000 26.12 0.00 0.00 4.10
7953 14143 0.249826 TCCGGCCGTAAAACTTCGTT 60.250 50.000 26.12 0.00 0.00 3.85
7954 14144 0.037046 ATCCGGCCGTAAAACTTCGT 60.037 50.000 26.12 0.00 0.00 3.85
7955 14145 0.372334 CATCCGGCCGTAAAACTTCG 59.628 55.000 26.12 5.01 0.00 3.79
7956 14146 1.729284 TCATCCGGCCGTAAAACTTC 58.271 50.000 26.12 0.00 0.00 3.01
7957 14147 1.808343 GTTCATCCGGCCGTAAAACTT 59.192 47.619 26.12 0.00 0.00 2.66
7958 14148 1.270947 TGTTCATCCGGCCGTAAAACT 60.271 47.619 26.12 0.00 0.00 2.66
7959 14149 1.135888 GTGTTCATCCGGCCGTAAAAC 60.136 52.381 26.12 20.98 0.00 2.43
7960 14150 1.158434 GTGTTCATCCGGCCGTAAAA 58.842 50.000 26.12 9.89 0.00 1.52
7961 14151 0.035036 TGTGTTCATCCGGCCGTAAA 59.965 50.000 26.12 9.71 0.00 2.01
7962 14152 0.250793 ATGTGTTCATCCGGCCGTAA 59.749 50.000 26.12 12.65 0.00 3.18
7963 14153 0.461163 CATGTGTTCATCCGGCCGTA 60.461 55.000 26.12 9.32 31.15 4.02
7964 14154 1.745115 CATGTGTTCATCCGGCCGT 60.745 57.895 26.12 2.55 31.15 5.68
7965 14155 2.472059 CCATGTGTTCATCCGGCCG 61.472 63.158 21.04 21.04 31.15 6.13
7966 14156 2.120909 CCCATGTGTTCATCCGGCC 61.121 63.158 0.00 0.00 31.15 6.13
7967 14157 1.077787 TCCCATGTGTTCATCCGGC 60.078 57.895 0.00 0.00 31.15 6.13
7968 14158 0.253044 ACTCCCATGTGTTCATCCGG 59.747 55.000 0.00 0.00 31.15 5.14
7969 14159 1.739466 CAACTCCCATGTGTTCATCCG 59.261 52.381 0.00 0.00 31.15 4.18
7970 14160 2.094675 CCAACTCCCATGTGTTCATCC 58.905 52.381 0.00 0.00 31.15 3.51
7971 14161 2.749621 GACCAACTCCCATGTGTTCATC 59.250 50.000 0.00 0.00 31.15 2.92
7972 14162 2.108075 TGACCAACTCCCATGTGTTCAT 59.892 45.455 0.00 0.00 34.21 2.57
7973 14163 1.492599 TGACCAACTCCCATGTGTTCA 59.507 47.619 0.00 0.00 0.00 3.18
7974 14164 2.270352 TGACCAACTCCCATGTGTTC 57.730 50.000 0.00 0.00 0.00 3.18
7975 14165 2.306847 GTTGACCAACTCCCATGTGTT 58.693 47.619 5.69 0.00 38.25 3.32
7976 14166 1.813862 CGTTGACCAACTCCCATGTGT 60.814 52.381 10.67 0.00 39.08 3.72
7977 14167 0.874390 CGTTGACCAACTCCCATGTG 59.126 55.000 10.67 0.00 39.08 3.21
7978 14168 0.889186 GCGTTGACCAACTCCCATGT 60.889 55.000 10.67 0.00 39.08 3.21
7979 14169 1.875963 GCGTTGACCAACTCCCATG 59.124 57.895 10.67 0.00 39.08 3.66
7980 14170 1.671054 CGCGTTGACCAACTCCCAT 60.671 57.895 10.67 0.00 39.08 4.00
7981 14171 2.280524 CGCGTTGACCAACTCCCA 60.281 61.111 10.67 0.00 39.08 4.37
7982 14172 2.438951 TACCGCGTTGACCAACTCCC 62.439 60.000 4.92 0.00 39.08 4.30
7983 14173 0.600782 TTACCGCGTTGACCAACTCC 60.601 55.000 4.92 1.94 39.08 3.85
7984 14174 1.127951 CATTACCGCGTTGACCAACTC 59.872 52.381 4.92 2.49 39.08 3.01
7985 14175 1.153353 CATTACCGCGTTGACCAACT 58.847 50.000 4.92 0.00 39.08 3.16
7986 14176 0.453782 GCATTACCGCGTTGACCAAC 60.454 55.000 4.92 2.94 37.92 3.77
7987 14177 1.579084 GGCATTACCGCGTTGACCAA 61.579 55.000 4.92 0.00 0.00 3.67
7988 14178 2.036006 GGCATTACCGCGTTGACCA 61.036 57.895 4.92 0.00 0.00 4.02
7989 14179 2.757056 GGGCATTACCGCGTTGACC 61.757 63.158 4.92 4.94 40.62 4.02
7990 14180 1.579084 TTGGGCATTACCGCGTTGAC 61.579 55.000 4.92 0.00 40.62 3.18
7991 14181 0.889638 TTTGGGCATTACCGCGTTGA 60.890 50.000 4.92 0.00 40.62 3.18
7992 14182 0.172352 ATTTGGGCATTACCGCGTTG 59.828 50.000 4.92 0.00 40.62 4.10
7993 14183 0.454196 GATTTGGGCATTACCGCGTT 59.546 50.000 4.92 0.00 40.62 4.84
7994 14184 1.381165 GGATTTGGGCATTACCGCGT 61.381 55.000 4.92 0.00 40.62 6.01
7995 14185 1.358759 GGATTTGGGCATTACCGCG 59.641 57.895 0.00 0.00 40.62 6.46
7996 14186 0.385390 CTGGATTTGGGCATTACCGC 59.615 55.000 0.00 0.00 40.62 5.68
7997 14187 1.032014 CCTGGATTTGGGCATTACCG 58.968 55.000 0.00 0.00 40.62 4.02
7998 14188 2.452600 TCCTGGATTTGGGCATTACC 57.547 50.000 0.00 0.00 37.93 2.85
7999 14189 4.202253 GGAAATCCTGGATTTGGGCATTAC 60.202 45.833 33.19 18.35 41.56 1.89
8000 14190 3.966665 GGAAATCCTGGATTTGGGCATTA 59.033 43.478 33.19 0.00 41.56 1.90
8001 14191 2.773661 GGAAATCCTGGATTTGGGCATT 59.226 45.455 33.19 12.61 41.56 3.56
8002 14192 2.401568 GGAAATCCTGGATTTGGGCAT 58.598 47.619 33.19 13.31 41.56 4.40
8003 14193 1.864669 GGAAATCCTGGATTTGGGCA 58.135 50.000 33.19 0.00 41.56 5.36
8004 14194 0.746659 CGGAAATCCTGGATTTGGGC 59.253 55.000 33.19 20.80 41.56 5.36
8005 14195 2.092429 TCTCGGAAATCCTGGATTTGGG 60.092 50.000 33.19 24.18 41.56 4.12
8006 14196 2.945668 GTCTCGGAAATCCTGGATTTGG 59.054 50.000 33.19 24.48 41.56 3.28
8007 14197 3.375299 GTGTCTCGGAAATCCTGGATTTG 59.625 47.826 33.19 21.73 41.56 2.32
8008 14198 3.009033 TGTGTCTCGGAAATCCTGGATTT 59.991 43.478 29.68 29.68 43.77 2.17
8009 14199 2.571653 TGTGTCTCGGAAATCCTGGATT 59.428 45.455 16.15 16.15 33.25 3.01
8010 14200 2.187958 TGTGTCTCGGAAATCCTGGAT 58.812 47.619 2.57 2.57 0.00 3.41
8011 14201 1.639722 TGTGTCTCGGAAATCCTGGA 58.360 50.000 0.00 0.00 0.00 3.86
8012 14202 2.472695 TTGTGTCTCGGAAATCCTGG 57.527 50.000 0.00 0.00 0.00 4.45
8013 14203 4.002982 TCAATTGTGTCTCGGAAATCCTG 58.997 43.478 5.13 0.00 0.00 3.86
8014 14204 4.286297 TCAATTGTGTCTCGGAAATCCT 57.714 40.909 5.13 0.00 0.00 3.24
8015 14205 4.396166 ACATCAATTGTGTCTCGGAAATCC 59.604 41.667 5.13 0.00 37.11 3.01
8016 14206 5.551760 ACATCAATTGTGTCTCGGAAATC 57.448 39.130 5.13 0.00 37.11 2.17
8017 14207 5.964958 AACATCAATTGTGTCTCGGAAAT 57.035 34.783 5.13 0.00 38.99 2.17
8018 14208 5.518812 CAAACATCAATTGTGTCTCGGAAA 58.481 37.500 5.13 0.00 38.99 3.13
8019 14209 4.556501 GCAAACATCAATTGTGTCTCGGAA 60.557 41.667 5.13 0.00 38.99 4.30
8020 14210 3.058293 GCAAACATCAATTGTGTCTCGGA 60.058 43.478 5.13 0.00 38.99 4.55
8021 14211 3.236816 GCAAACATCAATTGTGTCTCGG 58.763 45.455 5.13 2.44 38.99 4.63
8022 14212 3.887741 TGCAAACATCAATTGTGTCTCG 58.112 40.909 5.13 3.56 38.99 4.04
8023 14213 4.090930 GCATGCAAACATCAATTGTGTCTC 59.909 41.667 14.21 3.73 38.99 3.36
8024 14214 3.991773 GCATGCAAACATCAATTGTGTCT 59.008 39.130 14.21 0.00 38.99 3.41
8025 14215 3.991773 AGCATGCAAACATCAATTGTGTC 59.008 39.130 21.98 0.00 38.99 3.67
8026 14216 3.743911 CAGCATGCAAACATCAATTGTGT 59.256 39.130 21.98 6.59 38.99 3.72
8027 14217 3.743911 ACAGCATGCAAACATCAATTGTG 59.256 39.130 21.98 6.82 42.53 3.33
8028 14218 3.997762 ACAGCATGCAAACATCAATTGT 58.002 36.364 21.98 8.28 42.53 2.71
8029 14219 4.377943 CCAACAGCATGCAAACATCAATTG 60.378 41.667 21.98 7.59 42.53 2.32
8030 14220 3.749088 CCAACAGCATGCAAACATCAATT 59.251 39.130 21.98 0.00 42.53 2.32
8031 14221 3.007074 TCCAACAGCATGCAAACATCAAT 59.993 39.130 21.98 0.00 42.53 2.57
8032 14222 2.364647 TCCAACAGCATGCAAACATCAA 59.635 40.909 21.98 0.00 42.53 2.57
8033 14223 1.962100 TCCAACAGCATGCAAACATCA 59.038 42.857 21.98 0.00 42.53 3.07
8034 14224 2.029649 AGTCCAACAGCATGCAAACATC 60.030 45.455 21.98 4.61 42.53 3.06
8035 14225 1.965643 AGTCCAACAGCATGCAAACAT 59.034 42.857 21.98 0.00 42.53 2.71
8036 14226 1.401761 AGTCCAACAGCATGCAAACA 58.598 45.000 21.98 0.00 42.53 2.83
8037 14227 2.514205 AAGTCCAACAGCATGCAAAC 57.486 45.000 21.98 8.11 42.53 2.93
8038 14228 2.557924 CCTAAGTCCAACAGCATGCAAA 59.442 45.455 21.98 0.00 42.53 3.68
8039 14229 2.161855 CCTAAGTCCAACAGCATGCAA 58.838 47.619 21.98 0.00 42.53 4.08
8040 14230 1.825090 CCTAAGTCCAACAGCATGCA 58.175 50.000 21.98 0.00 42.53 3.96
8041 14231 0.453390 GCCTAAGTCCAACAGCATGC 59.547 55.000 10.51 10.51 42.53 4.06
8042 14232 2.119801 AGCCTAAGTCCAACAGCATG 57.880 50.000 0.00 0.00 46.00 4.06
8043 14233 5.455326 CCTTATAGCCTAAGTCCAACAGCAT 60.455 44.000 3.69 0.00 0.00 3.79
8044 14234 4.141711 CCTTATAGCCTAAGTCCAACAGCA 60.142 45.833 3.69 0.00 0.00 4.41
8045 14235 4.381411 CCTTATAGCCTAAGTCCAACAGC 58.619 47.826 3.69 0.00 0.00 4.40
8046 14236 4.743955 GCCCTTATAGCCTAAGTCCAACAG 60.744 50.000 3.69 0.00 0.00 3.16
8047 14237 3.135895 GCCCTTATAGCCTAAGTCCAACA 59.864 47.826 3.69 0.00 0.00 3.33
8048 14238 3.741249 GCCCTTATAGCCTAAGTCCAAC 58.259 50.000 3.69 0.00 0.00 3.77
8059 14249 2.098607 GTCCAAAAACGGCCCTTATAGC 59.901 50.000 0.00 0.00 0.00 2.97
8060 14250 3.617284 AGTCCAAAAACGGCCCTTATAG 58.383 45.455 0.00 0.00 0.00 1.31
8061 14251 3.724732 AGTCCAAAAACGGCCCTTATA 57.275 42.857 0.00 0.00 0.00 0.98
8062 14252 2.597578 AGTCCAAAAACGGCCCTTAT 57.402 45.000 0.00 0.00 0.00 1.73
8063 14253 2.368311 AAGTCCAAAAACGGCCCTTA 57.632 45.000 0.00 0.00 0.00 2.69
8064 14254 1.491668 AAAGTCCAAAAACGGCCCTT 58.508 45.000 0.00 0.00 0.00 3.95
8065 14255 1.491668 AAAAGTCCAAAAACGGCCCT 58.508 45.000 0.00 0.00 0.00 5.19
8066 14256 3.068448 TCTTAAAAGTCCAAAAACGGCCC 59.932 43.478 0.00 0.00 0.00 5.80
8067 14257 4.310357 TCTTAAAAGTCCAAAAACGGCC 57.690 40.909 0.00 0.00 0.00 6.13
8068 14258 5.584442 TCTTCTTAAAAGTCCAAAAACGGC 58.416 37.500 0.00 0.00 0.00 5.68
8069 14259 6.695713 CCTTCTTCTTAAAAGTCCAAAAACGG 59.304 38.462 0.00 0.00 0.00 4.44
8070 14260 7.255569 ACCTTCTTCTTAAAAGTCCAAAAACG 58.744 34.615 0.00 0.00 0.00 3.60
8071 14261 9.731819 CTACCTTCTTCTTAAAAGTCCAAAAAC 57.268 33.333 0.00 0.00 0.00 2.43
8072 14262 8.410912 GCTACCTTCTTCTTAAAAGTCCAAAAA 58.589 33.333 0.00 0.00 0.00 1.94
8073 14263 7.558444 TGCTACCTTCTTCTTAAAAGTCCAAAA 59.442 33.333 0.00 0.00 0.00 2.44
8074 14264 7.057894 TGCTACCTTCTTCTTAAAAGTCCAAA 58.942 34.615 0.00 0.00 0.00 3.28
8075 14265 6.597562 TGCTACCTTCTTCTTAAAAGTCCAA 58.402 36.000 0.00 0.00 0.00 3.53
8076 14266 6.182507 TGCTACCTTCTTCTTAAAAGTCCA 57.817 37.500 0.00 0.00 0.00 4.02
8077 14267 5.644206 CCTGCTACCTTCTTCTTAAAAGTCC 59.356 44.000 0.00 0.00 0.00 3.85
8078 14268 5.644206 CCCTGCTACCTTCTTCTTAAAAGTC 59.356 44.000 0.00 0.00 0.00 3.01
8079 14269 5.515008 CCCCTGCTACCTTCTTCTTAAAAGT 60.515 44.000 0.00 0.00 0.00 2.66
8080 14270 4.944317 CCCCTGCTACCTTCTTCTTAAAAG 59.056 45.833 0.00 0.00 0.00 2.27
8081 14271 4.263771 CCCCCTGCTACCTTCTTCTTAAAA 60.264 45.833 0.00 0.00 0.00 1.52
8082 14272 3.265995 CCCCCTGCTACCTTCTTCTTAAA 59.734 47.826 0.00 0.00 0.00 1.52
8083 14273 2.844348 CCCCCTGCTACCTTCTTCTTAA 59.156 50.000 0.00 0.00 0.00 1.85
8084 14274 2.045326 TCCCCCTGCTACCTTCTTCTTA 59.955 50.000 0.00 0.00 0.00 2.10
8085 14275 1.203440 TCCCCCTGCTACCTTCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
8086 14276 0.417841 TCCCCCTGCTACCTTCTTCT 59.582 55.000 0.00 0.00 0.00 2.85
8087 14277 1.065345 GTTCCCCCTGCTACCTTCTTC 60.065 57.143 0.00 0.00 0.00 2.87
8088 14278 0.992695 GTTCCCCCTGCTACCTTCTT 59.007 55.000 0.00 0.00 0.00 2.52
8089 14279 0.119358 AGTTCCCCCTGCTACCTTCT 59.881 55.000 0.00 0.00 0.00 2.85
8090 14280 0.992695 AAGTTCCCCCTGCTACCTTC 59.007 55.000 0.00 0.00 0.00 3.46
8091 14281 1.354705 GAAAGTTCCCCCTGCTACCTT 59.645 52.381 0.00 0.00 0.00 3.50
8092 14282 0.992695 GAAAGTTCCCCCTGCTACCT 59.007 55.000 0.00 0.00 0.00 3.08
8093 14283 0.696501 TGAAAGTTCCCCCTGCTACC 59.303 55.000 0.00 0.00 0.00 3.18
8094 14284 1.351350 AGTGAAAGTTCCCCCTGCTAC 59.649 52.381 0.00 0.00 0.00 3.58
8095 14285 1.742308 AGTGAAAGTTCCCCCTGCTA 58.258 50.000 0.00 0.00 0.00 3.49
8096 14286 1.742308 TAGTGAAAGTTCCCCCTGCT 58.258 50.000 0.00 0.00 0.00 4.24
8097 14287 2.039879 TCTTAGTGAAAGTTCCCCCTGC 59.960 50.000 0.00 0.00 36.51 4.85
8098 14288 3.328050 ACTCTTAGTGAAAGTTCCCCCTG 59.672 47.826 0.00 0.00 36.51 4.45
8099 14289 3.599348 ACTCTTAGTGAAAGTTCCCCCT 58.401 45.455 0.00 0.00 36.51 4.79
8100 14290 5.489249 CTTACTCTTAGTGAAAGTTCCCCC 58.511 45.833 0.00 0.00 36.51 5.40
8101 14291 5.012871 ACCTTACTCTTAGTGAAAGTTCCCC 59.987 44.000 0.00 0.00 36.51 4.81
8102 14292 6.111669 ACCTTACTCTTAGTGAAAGTTCCC 57.888 41.667 0.00 0.00 36.51 3.97
8103 14293 6.427242 CCAACCTTACTCTTAGTGAAAGTTCC 59.573 42.308 0.00 0.00 36.51 3.62
8104 14294 7.215085 TCCAACCTTACTCTTAGTGAAAGTTC 58.785 38.462 0.00 0.00 36.51 3.01
8105 14295 7.133133 TCCAACCTTACTCTTAGTGAAAGTT 57.867 36.000 0.00 0.00 36.51 2.66
8106 14296 6.742559 TCCAACCTTACTCTTAGTGAAAGT 57.257 37.500 0.00 0.00 36.51 2.66
8107 14297 7.982354 CCTATCCAACCTTACTCTTAGTGAAAG 59.018 40.741 0.00 0.00 36.45 2.62
8108 14298 7.093024 CCCTATCCAACCTTACTCTTAGTGAAA 60.093 40.741 0.00 0.00 0.00 2.69
8109 14299 6.383147 CCCTATCCAACCTTACTCTTAGTGAA 59.617 42.308 0.00 0.00 0.00 3.18
8110 14300 5.897824 CCCTATCCAACCTTACTCTTAGTGA 59.102 44.000 0.00 0.00 0.00 3.41
8111 14301 5.453480 GCCCTATCCAACCTTACTCTTAGTG 60.453 48.000 0.00 0.00 0.00 2.74
8112 14302 4.654724 GCCCTATCCAACCTTACTCTTAGT 59.345 45.833 0.00 0.00 0.00 2.24
8113 14303 4.654262 TGCCCTATCCAACCTTACTCTTAG 59.346 45.833 0.00 0.00 0.00 2.18
8114 14304 4.407945 GTGCCCTATCCAACCTTACTCTTA 59.592 45.833 0.00 0.00 0.00 2.10
8115 14305 3.200165 GTGCCCTATCCAACCTTACTCTT 59.800 47.826 0.00 0.00 0.00 2.85
8116 14306 2.772515 GTGCCCTATCCAACCTTACTCT 59.227 50.000 0.00 0.00 0.00 3.24
8117 14307 2.772515 AGTGCCCTATCCAACCTTACTC 59.227 50.000 0.00 0.00 0.00 2.59
8118 14308 2.846950 AGTGCCCTATCCAACCTTACT 58.153 47.619 0.00 0.00 0.00 2.24
8119 14309 3.071167 CCTAGTGCCCTATCCAACCTTAC 59.929 52.174 0.00 0.00 0.00 2.34
8120 14310 3.051650 TCCTAGTGCCCTATCCAACCTTA 60.052 47.826 0.00 0.00 0.00 2.69
8121 14311 2.127708 CCTAGTGCCCTATCCAACCTT 58.872 52.381 0.00 0.00 0.00 3.50
8122 14312 1.294068 TCCTAGTGCCCTATCCAACCT 59.706 52.381 0.00 0.00 0.00 3.50
8123 14313 1.802553 TCCTAGTGCCCTATCCAACC 58.197 55.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.