Multiple sequence alignment - TraesCS3D01G156900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G156900 chr3D 100.000 2597 0 0 1 2597 124497384 124494788 0.000000e+00 4796.0
1 TraesCS3D01G156900 chr3D 84.000 125 18 2 719 841 16431778 16431902 4.540000e-23 119.0
2 TraesCS3D01G156900 chr3D 89.583 96 2 4 1546 1633 348484997 348485092 5.870000e-22 115.0
3 TraesCS3D01G156900 chr2B 94.178 1838 81 15 492 2323 488700731 488702548 0.000000e+00 2778.0
4 TraesCS3D01G156900 chr2B 96.122 980 34 4 1342 2320 631590 632566 0.000000e+00 1596.0
5 TraesCS3D01G156900 chr2B 95.652 230 10 0 2368 2597 632565 632794 1.140000e-98 370.0
6 TraesCS3D01G156900 chr2B 91.304 230 6 1 2368 2597 488702544 488702759 4.200000e-78 302.0
7 TraesCS3D01G156900 chr2B 90.043 231 23 0 495 725 631324 631554 1.510000e-77 300.0
8 TraesCS3D01G156900 chr2B 95.122 82 3 1 62 142 179115510 179115429 7.540000e-26 128.0
9 TraesCS3D01G156900 chr1A 93.519 1836 105 11 497 2323 143380063 143378233 0.000000e+00 2719.0
10 TraesCS3D01G156900 chr1A 93.613 1143 52 9 1182 2323 480976394 480975272 0.000000e+00 1687.0
11 TraesCS3D01G156900 chr1A 90.909 671 58 3 518 1187 480984171 480983503 0.000000e+00 898.0
12 TraesCS3D01G156900 chr1A 97.797 227 5 0 2371 2597 480975273 480975047 2.420000e-105 392.0
13 TraesCS3D01G156900 chr1A 97.321 224 6 0 2374 2597 143378231 143378008 5.240000e-102 381.0
14 TraesCS3D01G156900 chr1A 100.000 47 0 0 2324 2370 238128647 238128601 1.280000e-13 87.9
15 TraesCS3D01G156900 chr1A 98.000 50 1 0 2321 2370 416424446 416424495 1.280000e-13 87.9
16 TraesCS3D01G156900 chr7A 92.970 1835 107 13 496 2323 346770679 346768860 0.000000e+00 2654.0
17 TraesCS3D01G156900 chr7A 95.575 226 9 1 2371 2595 346768861 346768636 6.830000e-96 361.0
18 TraesCS3D01G156900 chr7A 92.913 127 8 1 138 264 352132200 352132325 1.590000e-42 183.0
19 TraesCS3D01G156900 chr7B 96.019 1256 42 8 923 2176 511464566 511463317 0.000000e+00 2036.0
20 TraesCS3D01G156900 chr7B 89.250 400 32 5 511 900 511464954 511464556 8.350000e-135 490.0
21 TraesCS3D01G156900 chr7B 91.398 93 3 3 1546 1633 27648178 27648270 3.510000e-24 122.0
22 TraesCS3D01G156900 chr4A 95.969 1042 33 5 1282 2320 622161061 622162096 0.000000e+00 1683.0
23 TraesCS3D01G156900 chr4A 91.842 809 55 8 487 1286 622133982 622134788 0.000000e+00 1118.0
24 TraesCS3D01G156900 chr4A 85.088 456 32 21 1 423 74587465 74587013 1.430000e-117 433.0
25 TraesCS3D01G156900 chr4A 96.522 230 8 0 2368 2597 622162095 622162324 5.240000e-102 381.0
26 TraesCS3D01G156900 chr4A 76.628 261 39 12 719 958 729649122 729648863 9.760000e-25 124.0
27 TraesCS3D01G156900 chr1B 90.765 379 30 5 1635 2013 200035722 200035349 3.860000e-138 501.0
28 TraesCS3D01G156900 chr1B 87.010 408 31 10 1227 1633 648255050 648255436 8.530000e-120 440.0
29 TraesCS3D01G156900 chr1B 98.000 50 1 0 2321 2370 135111075 135111124 1.280000e-13 87.9
30 TraesCS3D01G156900 chr1B 98.000 50 1 0 2321 2370 638758338 638758387 1.280000e-13 87.9
31 TraesCS3D01G156900 chr6A 85.333 450 54 8 1635 2084 239316431 239316868 3.050000e-124 455.0
32 TraesCS3D01G156900 chr6A 87.255 408 30 10 1227 1633 52902693 52903079 1.830000e-121 446.0
33 TraesCS3D01G156900 chr6A 78.800 750 92 35 494 1232 52901901 52902594 2.370000e-120 442.0
34 TraesCS3D01G156900 chr5A 87.407 405 29 10 1230 1633 42136866 42136483 1.830000e-121 446.0
35 TraesCS3D01G156900 chr5A 92.969 128 6 3 138 264 688917019 688917144 1.590000e-42 183.0
36 TraesCS3D01G156900 chr3B 87.255 408 30 10 1227 1633 51764697 51765083 1.830000e-121 446.0
37 TraesCS3D01G156900 chrUn 78.215 762 96 38 482 1232 122292476 122293178 8.590000e-115 424.0
38 TraesCS3D01G156900 chrUn 83.284 335 28 15 902 1232 386628939 386629249 1.520000e-72 283.0
39 TraesCS3D01G156900 chrUn 92.126 127 9 1 138 264 397078424 397078549 7.390000e-41 178.0
40 TraesCS3D01G156900 chrUn 92.126 127 9 1 138 264 455551772 455551647 7.390000e-41 178.0
41 TraesCS3D01G156900 chrUn 93.902 82 4 1 62 142 216510131 216510212 3.510000e-24 122.0
42 TraesCS3D01G156900 chrUn 93.902 82 4 1 62 142 397078317 397078398 3.510000e-24 122.0
43 TraesCS3D01G156900 chrUn 93.902 82 4 1 62 142 424751168 424751249 3.510000e-24 122.0
44 TraesCS3D01G156900 chrUn 93.902 82 4 1 62 142 455551879 455551798 3.510000e-24 122.0
45 TraesCS3D01G156900 chrUn 100.000 47 0 0 2324 2370 86462355 86462309 1.280000e-13 87.9
46 TraesCS3D01G156900 chrUn 98.000 50 1 0 2321 2370 222672916 222672965 1.280000e-13 87.9
47 TraesCS3D01G156900 chrUn 98.000 50 1 0 2321 2370 229496244 229496293 1.280000e-13 87.9
48 TraesCS3D01G156900 chr4D 90.064 312 11 4 138 446 393153575 393153281 1.130000e-103 387.0
49 TraesCS3D01G156900 chr4D 95.070 142 6 1 2 142 393153742 393153601 3.360000e-54 222.0
50 TraesCS3D01G156900 chr4D 100.000 47 0 0 2324 2370 123438155 123438109 1.280000e-13 87.9
51 TraesCS3D01G156900 chr2A 92.913 127 8 1 138 264 335843193 335843068 1.590000e-42 183.0
52 TraesCS3D01G156900 chr6D 92.126 127 9 1 138 264 389248255 389248130 7.390000e-41 178.0
53 TraesCS3D01G156900 chr6D 92.126 127 9 1 138 264 389253050 389252925 7.390000e-41 178.0
54 TraesCS3D01G156900 chr6D 93.902 82 4 1 62 142 389248362 389248281 3.510000e-24 122.0
55 TraesCS3D01G156900 chr6D 93.902 82 4 1 62 142 389253157 389253076 3.510000e-24 122.0
56 TraesCS3D01G156900 chr6B 85.600 125 16 2 719 841 247038908 247038784 2.100000e-26 130.0
57 TraesCS3D01G156900 chr5D 100.000 47 0 0 2324 2370 324464433 324464387 1.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G156900 chr3D 124494788 124497384 2596 True 4796.000000 4796 100.0000 1 2597 1 chr3D.!!$R1 2596
1 TraesCS3D01G156900 chr2B 488700731 488702759 2028 False 1540.000000 2778 92.7410 492 2597 2 chr2B.!!$F2 2105
2 TraesCS3D01G156900 chr2B 631324 632794 1470 False 755.333333 1596 93.9390 495 2597 3 chr2B.!!$F1 2102
3 TraesCS3D01G156900 chr1A 143378008 143380063 2055 True 1550.000000 2719 95.4200 497 2597 2 chr1A.!!$R3 2100
4 TraesCS3D01G156900 chr1A 480975047 480976394 1347 True 1039.500000 1687 95.7050 1182 2597 2 chr1A.!!$R4 1415
5 TraesCS3D01G156900 chr1A 480983503 480984171 668 True 898.000000 898 90.9090 518 1187 1 chr1A.!!$R2 669
6 TraesCS3D01G156900 chr7A 346768636 346770679 2043 True 1507.500000 2654 94.2725 496 2595 2 chr7A.!!$R1 2099
7 TraesCS3D01G156900 chr7B 511463317 511464954 1637 True 1263.000000 2036 92.6345 511 2176 2 chr7B.!!$R1 1665
8 TraesCS3D01G156900 chr4A 622133982 622134788 806 False 1118.000000 1118 91.8420 487 1286 1 chr4A.!!$F1 799
9 TraesCS3D01G156900 chr4A 622161061 622162324 1263 False 1032.000000 1683 96.2455 1282 2597 2 chr4A.!!$F2 1315
10 TraesCS3D01G156900 chr6A 52901901 52903079 1178 False 444.000000 446 83.0275 494 1633 2 chr6A.!!$F2 1139
11 TraesCS3D01G156900 chrUn 122292476 122293178 702 False 424.000000 424 78.2150 482 1232 1 chrUn.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
309 310 0.038166 TGGTCACCTCTCATTTGGCC 59.962 55.0 0.0 0.0 35.43 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1901 2048 0.681243 AATTTCCCGAGGGCAAGAGC 60.681 55.0 2.58 0.0 41.1 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.810545 ATTTTTACTAGACTACTTGAGAGCATC 57.189 33.333 0.00 0.00 0.00 3.91
37 38 4.806571 GAGCATCTACAACCGCGA 57.193 55.556 8.23 0.00 0.00 5.87
38 39 3.274393 GAGCATCTACAACCGCGAT 57.726 52.632 8.23 0.00 0.00 4.58
39 40 0.855349 GAGCATCTACAACCGCGATG 59.145 55.000 8.23 9.26 38.02 3.84
40 41 0.175760 AGCATCTACAACCGCGATGT 59.824 50.000 18.94 18.94 37.46 3.06
41 42 0.577269 GCATCTACAACCGCGATGTC 59.423 55.000 18.60 3.49 37.46 3.06
42 43 1.209128 CATCTACAACCGCGATGTCC 58.791 55.000 18.60 0.00 32.07 4.02
43 44 1.112113 ATCTACAACCGCGATGTCCT 58.888 50.000 18.60 4.89 32.27 3.85
44 45 1.753930 TCTACAACCGCGATGTCCTA 58.246 50.000 18.60 3.84 32.27 2.94
45 46 2.093890 TCTACAACCGCGATGTCCTAA 58.906 47.619 18.60 3.53 32.27 2.69
46 47 2.691526 TCTACAACCGCGATGTCCTAAT 59.308 45.455 18.60 0.00 32.27 1.73
47 48 2.396590 ACAACCGCGATGTCCTAATT 57.603 45.000 8.23 0.00 0.00 1.40
48 49 2.706890 ACAACCGCGATGTCCTAATTT 58.293 42.857 8.23 0.00 0.00 1.82
49 50 2.418628 ACAACCGCGATGTCCTAATTTG 59.581 45.455 8.23 0.00 0.00 2.32
50 51 2.675844 CAACCGCGATGTCCTAATTTGA 59.324 45.455 8.23 0.00 0.00 2.69
51 52 2.277084 ACCGCGATGTCCTAATTTGAC 58.723 47.619 8.23 1.86 0.00 3.18
52 53 1.597663 CCGCGATGTCCTAATTTGACC 59.402 52.381 8.23 0.00 31.60 4.02
53 54 1.597663 CGCGATGTCCTAATTTGACCC 59.402 52.381 0.00 0.00 31.60 4.46
54 55 2.741878 CGCGATGTCCTAATTTGACCCT 60.742 50.000 0.00 0.00 31.60 4.34
55 56 2.872858 GCGATGTCCTAATTTGACCCTC 59.127 50.000 5.62 2.98 31.60 4.30
56 57 3.432326 GCGATGTCCTAATTTGACCCTCT 60.432 47.826 5.62 0.00 31.60 3.69
57 58 4.122776 CGATGTCCTAATTTGACCCTCTG 58.877 47.826 5.62 0.00 31.60 3.35
58 59 4.383118 CGATGTCCTAATTTGACCCTCTGT 60.383 45.833 5.62 0.00 31.60 3.41
59 60 5.163447 CGATGTCCTAATTTGACCCTCTGTA 60.163 44.000 5.62 0.00 31.60 2.74
60 61 6.463049 CGATGTCCTAATTTGACCCTCTGTAT 60.463 42.308 5.62 0.00 31.60 2.29
61 62 7.255836 CGATGTCCTAATTTGACCCTCTGTATA 60.256 40.741 5.62 0.00 31.60 1.47
62 63 7.931015 TGTCCTAATTTGACCCTCTGTATAT 57.069 36.000 5.62 0.00 31.60 0.86
63 64 9.615660 ATGTCCTAATTTGACCCTCTGTATATA 57.384 33.333 5.62 0.00 31.60 0.86
64 65 9.442062 TGTCCTAATTTGACCCTCTGTATATAA 57.558 33.333 5.62 0.00 31.60 0.98
67 68 9.220767 CCTAATTTGACCCTCTGTATATAAAGC 57.779 37.037 0.00 0.00 0.00 3.51
68 69 9.778741 CTAATTTGACCCTCTGTATATAAAGCA 57.221 33.333 0.00 0.00 0.00 3.91
70 71 8.682936 ATTTGACCCTCTGTATATAAAGCAAG 57.317 34.615 0.00 0.00 0.00 4.01
71 72 7.432148 TTGACCCTCTGTATATAAAGCAAGA 57.568 36.000 0.00 0.00 0.00 3.02
72 73 7.432148 TGACCCTCTGTATATAAAGCAAGAA 57.568 36.000 0.00 0.00 0.00 2.52
73 74 7.857456 TGACCCTCTGTATATAAAGCAAGAAA 58.143 34.615 0.00 0.00 0.00 2.52
74 75 8.325787 TGACCCTCTGTATATAAAGCAAGAAAA 58.674 33.333 0.00 0.00 0.00 2.29
75 76 9.343539 GACCCTCTGTATATAAAGCAAGAAAAT 57.656 33.333 0.00 0.00 0.00 1.82
89 90 9.436957 AAAGCAAGAAAATAAGTCGAAGATAGA 57.563 29.630 0.00 0.00 40.67 1.98
90 91 9.436957 AAGCAAGAAAATAAGTCGAAGATAGAA 57.563 29.630 0.00 0.00 40.67 2.10
91 92 9.092876 AGCAAGAAAATAAGTCGAAGATAGAAG 57.907 33.333 0.00 0.00 40.67 2.85
92 93 9.088512 GCAAGAAAATAAGTCGAAGATAGAAGA 57.911 33.333 0.00 0.00 40.67 2.87
95 96 9.589111 AGAAAATAAGTCGAAGATAGAAGAACC 57.411 33.333 0.00 0.00 40.67 3.62
96 97 8.719560 AAAATAAGTCGAAGATAGAAGAACCC 57.280 34.615 0.00 0.00 40.67 4.11
97 98 7.419711 AATAAGTCGAAGATAGAAGAACCCA 57.580 36.000 0.00 0.00 40.67 4.51
98 99 4.993029 AGTCGAAGATAGAAGAACCCAG 57.007 45.455 0.00 0.00 40.67 4.45
99 100 4.601084 AGTCGAAGATAGAAGAACCCAGA 58.399 43.478 0.00 0.00 40.67 3.86
100 101 5.205056 AGTCGAAGATAGAAGAACCCAGAT 58.795 41.667 0.00 0.00 40.67 2.90
101 102 5.659079 AGTCGAAGATAGAAGAACCCAGATT 59.341 40.000 0.00 0.00 40.67 2.40
102 103 5.980715 GTCGAAGATAGAAGAACCCAGATTC 59.019 44.000 0.00 0.00 40.67 2.52
103 104 5.069251 TCGAAGATAGAAGAACCCAGATTCC 59.931 44.000 0.00 0.00 0.00 3.01
104 105 5.163405 CGAAGATAGAAGAACCCAGATTCCA 60.163 44.000 0.00 0.00 0.00 3.53
105 106 6.630413 CGAAGATAGAAGAACCCAGATTCCAA 60.630 42.308 0.00 0.00 0.00 3.53
106 107 6.642733 AGATAGAAGAACCCAGATTCCAAA 57.357 37.500 0.00 0.00 0.00 3.28
107 108 7.218314 AGATAGAAGAACCCAGATTCCAAAT 57.782 36.000 0.00 0.00 0.00 2.32
108 109 7.059156 AGATAGAAGAACCCAGATTCCAAATG 58.941 38.462 0.00 0.00 0.00 2.32
109 110 5.261040 AGAAGAACCCAGATTCCAAATGA 57.739 39.130 0.00 0.00 0.00 2.57
110 111 5.644188 AGAAGAACCCAGATTCCAAATGAA 58.356 37.500 0.00 0.00 37.38 2.57
111 112 5.713861 AGAAGAACCCAGATTCCAAATGAAG 59.286 40.000 0.00 0.00 36.14 3.02
112 113 5.261040 AGAACCCAGATTCCAAATGAAGA 57.739 39.130 0.00 0.00 36.14 2.87
113 114 5.644188 AGAACCCAGATTCCAAATGAAGAA 58.356 37.500 0.00 0.00 36.14 2.52
114 115 6.077322 AGAACCCAGATTCCAAATGAAGAAA 58.923 36.000 0.00 0.00 36.14 2.52
115 116 6.727697 AGAACCCAGATTCCAAATGAAGAAAT 59.272 34.615 0.00 0.00 36.14 2.17
116 117 6.290294 ACCCAGATTCCAAATGAAGAAATG 57.710 37.500 0.00 0.00 36.14 2.32
117 118 5.188359 ACCCAGATTCCAAATGAAGAAATGG 59.812 40.000 0.00 0.00 36.14 3.16
118 119 5.422970 CCCAGATTCCAAATGAAGAAATGGA 59.577 40.000 8.24 0.00 40.10 3.41
124 125 6.012658 TCCAAATGAAGAAATGGAAACTCG 57.987 37.500 0.00 0.00 38.95 4.18
125 126 5.767665 TCCAAATGAAGAAATGGAAACTCGA 59.232 36.000 0.00 0.00 38.95 4.04
126 127 6.264292 TCCAAATGAAGAAATGGAAACTCGAA 59.736 34.615 0.00 0.00 38.95 3.71
127 128 6.922957 CCAAATGAAGAAATGGAAACTCGAAA 59.077 34.615 0.00 0.00 34.82 3.46
128 129 7.437862 CCAAATGAAGAAATGGAAACTCGAAAA 59.562 33.333 0.00 0.00 34.82 2.29
129 130 8.482429 CAAATGAAGAAATGGAAACTCGAAAAG 58.518 33.333 0.00 0.00 0.00 2.27
130 131 6.072112 TGAAGAAATGGAAACTCGAAAAGG 57.928 37.500 0.00 0.00 0.00 3.11
131 132 5.825679 TGAAGAAATGGAAACTCGAAAAGGA 59.174 36.000 0.00 0.00 0.00 3.36
132 133 6.490040 TGAAGAAATGGAAACTCGAAAAGGAT 59.510 34.615 0.00 0.00 0.00 3.24
133 134 6.502136 AGAAATGGAAACTCGAAAAGGATC 57.498 37.500 0.00 0.00 0.00 3.36
134 135 5.416013 AGAAATGGAAACTCGAAAAGGATCC 59.584 40.000 2.48 2.48 35.48 3.36
135 136 2.695359 TGGAAACTCGAAAAGGATCCG 58.305 47.619 5.98 0.00 36.91 4.18
136 137 2.038033 TGGAAACTCGAAAAGGATCCGT 59.962 45.455 5.98 0.00 36.91 4.69
137 138 3.072211 GGAAACTCGAAAAGGATCCGTT 58.928 45.455 7.15 7.15 0.00 4.44
138 139 3.501062 GGAAACTCGAAAAGGATCCGTTT 59.499 43.478 23.45 23.45 0.00 3.60
139 140 4.464112 GAAACTCGAAAAGGATCCGTTTG 58.536 43.478 27.39 18.40 0.00 2.93
140 141 3.396260 ACTCGAAAAGGATCCGTTTGA 57.604 42.857 27.39 21.07 0.00 2.69
141 142 3.939066 ACTCGAAAAGGATCCGTTTGAT 58.061 40.909 27.39 6.60 36.01 2.57
142 143 5.080969 ACTCGAAAAGGATCCGTTTGATA 57.919 39.130 27.39 12.75 32.41 2.15
143 144 5.671493 ACTCGAAAAGGATCCGTTTGATAT 58.329 37.500 27.39 12.77 32.41 1.63
144 145 5.523916 ACTCGAAAAGGATCCGTTTGATATG 59.476 40.000 27.39 15.23 32.41 1.78
145 146 4.814234 TCGAAAAGGATCCGTTTGATATGG 59.186 41.667 27.39 7.44 32.41 2.74
146 147 4.814234 CGAAAAGGATCCGTTTGATATGGA 59.186 41.667 27.39 0.00 45.96 3.41
147 148 5.050091 CGAAAAGGATCCGTTTGATATGGAG 60.050 44.000 27.39 7.08 45.11 3.86
148 149 5.630415 AAAGGATCCGTTTGATATGGAGA 57.370 39.130 7.15 0.00 45.11 3.71
149 150 5.630415 AAGGATCCGTTTGATATGGAGAA 57.370 39.130 5.98 0.00 45.11 2.87
150 151 5.630415 AGGATCCGTTTGATATGGAGAAA 57.370 39.130 5.98 0.00 45.11 2.52
151 152 5.615289 AGGATCCGTTTGATATGGAGAAAG 58.385 41.667 5.98 0.00 45.11 2.62
152 153 5.366768 AGGATCCGTTTGATATGGAGAAAGA 59.633 40.000 5.98 0.00 45.11 2.52
153 154 6.043706 AGGATCCGTTTGATATGGAGAAAGAT 59.956 38.462 5.98 0.00 45.11 2.40
154 155 6.712547 GGATCCGTTTGATATGGAGAAAGATT 59.287 38.462 0.00 0.00 45.11 2.40
155 156 7.229506 GGATCCGTTTGATATGGAGAAAGATTT 59.770 37.037 0.00 0.00 45.11 2.17
156 157 7.553881 TCCGTTTGATATGGAGAAAGATTTC 57.446 36.000 0.00 0.00 37.00 2.17
158 159 7.829211 TCCGTTTGATATGGAGAAAGATTTCTT 59.171 33.333 9.11 0.00 46.84 2.52
159 160 8.125448 CCGTTTGATATGGAGAAAGATTTCTTC 58.875 37.037 9.11 7.85 46.84 2.87
160 161 8.887717 CGTTTGATATGGAGAAAGATTTCTTCT 58.112 33.333 13.45 3.88 46.84 2.85
187 188 7.841915 TTATAAGACGTGATTTTGATCTGCA 57.158 32.000 0.00 0.00 0.00 4.41
188 189 6.932356 ATAAGACGTGATTTTGATCTGCAT 57.068 33.333 0.00 0.00 0.00 3.96
189 190 9.541143 TTATAAGACGTGATTTTGATCTGCATA 57.459 29.630 0.00 0.00 0.00 3.14
190 191 6.932356 AAGACGTGATTTTGATCTGCATAT 57.068 33.333 0.00 0.00 0.00 1.78
191 192 6.296365 AGACGTGATTTTGATCTGCATATG 57.704 37.500 0.00 0.00 0.00 1.78
192 193 5.819379 AGACGTGATTTTGATCTGCATATGT 59.181 36.000 4.29 0.00 0.00 2.29
193 194 6.317140 AGACGTGATTTTGATCTGCATATGTT 59.683 34.615 4.29 0.00 0.00 2.71
194 195 6.855836 ACGTGATTTTGATCTGCATATGTTT 58.144 32.000 4.29 0.00 0.00 2.83
195 196 6.748658 ACGTGATTTTGATCTGCATATGTTTG 59.251 34.615 4.29 0.00 0.00 2.93
196 197 6.197655 CGTGATTTTGATCTGCATATGTTTGG 59.802 38.462 4.29 0.00 0.00 3.28
197 198 7.037438 GTGATTTTGATCTGCATATGTTTGGT 58.963 34.615 4.29 0.00 0.00 3.67
198 199 8.190122 GTGATTTTGATCTGCATATGTTTGGTA 58.810 33.333 4.29 0.00 0.00 3.25
199 200 8.747471 TGATTTTGATCTGCATATGTTTGGTAA 58.253 29.630 4.29 0.00 0.00 2.85
200 201 9.585099 GATTTTGATCTGCATATGTTTGGTAAA 57.415 29.630 4.29 0.00 0.00 2.01
205 206 8.352201 TGATCTGCATATGTTTGGTAAATAAGC 58.648 33.333 4.29 0.00 0.00 3.09
206 207 7.637631 TCTGCATATGTTTGGTAAATAAGCA 57.362 32.000 4.29 0.00 0.00 3.91
207 208 8.060931 TCTGCATATGTTTGGTAAATAAGCAA 57.939 30.769 4.29 0.00 43.65 3.91
208 209 8.694540 TCTGCATATGTTTGGTAAATAAGCAAT 58.305 29.630 4.29 0.00 44.64 3.56
209 210 8.870160 TGCATATGTTTGGTAAATAAGCAATC 57.130 30.769 4.29 0.00 44.64 2.67
210 211 8.694540 TGCATATGTTTGGTAAATAAGCAATCT 58.305 29.630 4.29 0.00 44.64 2.40
211 212 9.533253 GCATATGTTTGGTAAATAAGCAATCTT 57.467 29.630 4.29 0.00 44.64 2.40
215 216 7.526608 TGTTTGGTAAATAAGCAATCTTCTCG 58.473 34.615 0.00 0.00 44.64 4.04
216 217 7.174253 TGTTTGGTAAATAAGCAATCTTCTCGT 59.826 33.333 0.00 0.00 44.64 4.18
217 218 7.681939 TTGGTAAATAAGCAATCTTCTCGTT 57.318 32.000 0.00 0.00 40.58 3.85
218 219 7.681939 TGGTAAATAAGCAATCTTCTCGTTT 57.318 32.000 0.00 0.00 33.85 3.60
219 220 8.780846 TGGTAAATAAGCAATCTTCTCGTTTA 57.219 30.769 0.00 0.00 33.85 2.01
220 221 9.221933 TGGTAAATAAGCAATCTTCTCGTTTAA 57.778 29.630 0.00 0.00 33.85 1.52
228 229 8.893219 AGCAATCTTCTCGTTTAATCATATCA 57.107 30.769 0.00 0.00 0.00 2.15
229 230 9.499479 AGCAATCTTCTCGTTTAATCATATCAT 57.501 29.630 0.00 0.00 0.00 2.45
257 258 9.829507 AATTGGAAGTGTTCAATTAAAACATGA 57.170 25.926 0.00 0.00 40.50 3.07
258 259 9.829507 ATTGGAAGTGTTCAATTAAAACATGAA 57.170 25.926 0.00 0.00 38.75 2.57
259 260 9.658799 TTGGAAGTGTTCAATTAAAACATGAAA 57.341 25.926 0.00 0.00 38.75 2.69
260 261 9.658799 TGGAAGTGTTCAATTAAAACATGAAAA 57.341 25.926 0.00 0.00 38.75 2.29
261 262 9.914923 GGAAGTGTTCAATTAAAACATGAAAAC 57.085 29.630 0.00 0.00 40.18 2.43
262 263 9.618410 GAAGTGTTCAATTAAAACATGAAAACG 57.382 29.630 0.00 0.00 43.11 3.60
263 264 8.696410 AGTGTTCAATTAAAACATGAAAACGT 57.304 26.923 0.00 0.00 43.11 3.99
264 265 8.803799 AGTGTTCAATTAAAACATGAAAACGTC 58.196 29.630 0.00 0.00 43.11 4.34
265 266 8.053653 GTGTTCAATTAAAACATGAAAACGTCC 58.946 33.333 0.00 0.00 38.75 4.79
266 267 7.759886 TGTTCAATTAAAACATGAAAACGTCCA 59.240 29.630 0.00 0.00 35.07 4.02
267 268 8.760569 GTTCAATTAAAACATGAAAACGTCCAT 58.239 29.630 0.00 0.00 35.07 3.41
268 269 8.291888 TCAATTAAAACATGAAAACGTCCATG 57.708 30.769 18.14 18.14 44.12 3.66
269 270 7.383572 TCAATTAAAACATGAAAACGTCCATGG 59.616 33.333 21.52 4.97 43.16 3.66
270 271 4.927978 AAAACATGAAAACGTCCATGGA 57.072 36.364 11.44 11.44 43.16 3.41
271 272 3.915437 AACATGAAAACGTCCATGGAC 57.085 42.857 31.59 31.59 43.16 4.02
272 273 2.857483 ACATGAAAACGTCCATGGACA 58.143 42.857 37.42 21.69 44.77 4.02
273 274 2.552315 ACATGAAAACGTCCATGGACAC 59.448 45.455 37.42 23.87 44.77 3.67
274 275 1.222300 TGAAAACGTCCATGGACACG 58.778 50.000 37.42 29.28 44.77 4.49
277 278 2.654877 ACGTCCATGGACACGTCC 59.345 61.111 37.42 15.60 46.04 4.79
278 279 2.939261 ACGTCCATGGACACGTCCC 61.939 63.158 37.42 14.91 46.04 4.46
280 281 3.953826 ACGTCCATGGACACGTCCCTA 62.954 57.143 37.42 1.81 46.04 3.53
286 287 2.958513 GGACACGTCCCTAGACAGT 58.041 57.895 4.78 0.00 43.73 3.55
287 288 0.526662 GGACACGTCCCTAGACAGTG 59.473 60.000 4.78 13.00 45.13 3.66
288 289 0.109226 GACACGTCCCTAGACAGTGC 60.109 60.000 13.93 7.13 44.31 4.40
289 290 1.215647 CACGTCCCTAGACAGTGCC 59.784 63.158 0.00 0.00 43.73 5.01
290 291 1.076906 ACGTCCCTAGACAGTGCCT 59.923 57.895 0.00 0.00 43.73 4.75
291 292 1.251527 ACGTCCCTAGACAGTGCCTG 61.252 60.000 0.00 1.16 43.73 4.85
292 293 1.901085 GTCCCTAGACAGTGCCTGG 59.099 63.158 7.06 0.00 42.99 4.45
293 294 0.905337 GTCCCTAGACAGTGCCTGGT 60.905 60.000 7.06 0.00 42.99 4.00
294 295 0.614979 TCCCTAGACAGTGCCTGGTC 60.615 60.000 7.06 0.00 35.51 4.02
295 296 0.904865 CCCTAGACAGTGCCTGGTCA 60.905 60.000 7.06 0.00 35.51 4.02
296 297 0.247736 CCTAGACAGTGCCTGGTCAC 59.752 60.000 11.69 11.69 35.51 3.67
297 298 0.247736 CTAGACAGTGCCTGGTCACC 59.752 60.000 14.77 0.00 37.68 4.02
298 299 0.178932 TAGACAGTGCCTGGTCACCT 60.179 55.000 14.77 9.39 37.68 4.00
299 300 1.004440 GACAGTGCCTGGTCACCTC 60.004 63.158 14.77 8.40 37.68 3.85
300 301 1.460305 ACAGTGCCTGGTCACCTCT 60.460 57.895 14.77 0.00 37.68 3.69
301 302 1.294780 CAGTGCCTGGTCACCTCTC 59.705 63.158 14.77 0.00 37.68 3.20
302 303 1.152247 AGTGCCTGGTCACCTCTCA 60.152 57.895 14.77 0.00 37.68 3.27
303 304 0.546267 AGTGCCTGGTCACCTCTCAT 60.546 55.000 14.77 0.00 37.68 2.90
304 305 0.326264 GTGCCTGGTCACCTCTCATT 59.674 55.000 0.00 0.00 0.00 2.57
305 306 1.067295 TGCCTGGTCACCTCTCATTT 58.933 50.000 0.00 0.00 0.00 2.32
306 307 1.271543 TGCCTGGTCACCTCTCATTTG 60.272 52.381 0.00 0.00 0.00 2.32
307 308 1.952367 GCCTGGTCACCTCTCATTTGG 60.952 57.143 0.00 0.00 0.00 3.28
308 309 1.457346 CTGGTCACCTCTCATTTGGC 58.543 55.000 0.00 0.00 0.00 4.52
309 310 0.038166 TGGTCACCTCTCATTTGGCC 59.962 55.000 0.00 0.00 35.43 5.36
310 311 1.026718 GGTCACCTCTCATTTGGCCG 61.027 60.000 0.00 0.00 0.00 6.13
311 312 1.377202 TCACCTCTCATTTGGCCGC 60.377 57.895 0.00 0.00 0.00 6.53
312 313 2.436646 ACCTCTCATTTGGCCGCG 60.437 61.111 0.00 0.00 0.00 6.46
313 314 2.436646 CCTCTCATTTGGCCGCGT 60.437 61.111 4.92 0.00 0.00 6.01
314 315 2.464459 CCTCTCATTTGGCCGCGTC 61.464 63.158 4.92 0.00 0.00 5.19
315 316 1.741401 CTCTCATTTGGCCGCGTCA 60.741 57.895 4.92 0.00 0.00 4.35
316 317 1.699656 CTCTCATTTGGCCGCGTCAG 61.700 60.000 4.92 0.00 0.00 3.51
317 318 1.741401 CTCATTTGGCCGCGTCAGA 60.741 57.895 4.92 0.00 0.00 3.27
318 319 1.699656 CTCATTTGGCCGCGTCAGAG 61.700 60.000 4.92 3.00 0.00 3.35
319 320 3.127533 ATTTGGCCGCGTCAGAGC 61.128 61.111 4.92 0.00 0.00 4.09
342 343 2.873094 CCCCCTAATATCCGAAACCC 57.127 55.000 0.00 0.00 0.00 4.11
343 344 1.353358 CCCCCTAATATCCGAAACCCC 59.647 57.143 0.00 0.00 0.00 4.95
344 345 2.059490 CCCCTAATATCCGAAACCCCA 58.941 52.381 0.00 0.00 0.00 4.96
345 346 2.444010 CCCCTAATATCCGAAACCCCAA 59.556 50.000 0.00 0.00 0.00 4.12
346 347 3.117436 CCCCTAATATCCGAAACCCCAAA 60.117 47.826 0.00 0.00 0.00 3.28
347 348 4.448640 CCCCTAATATCCGAAACCCCAAAT 60.449 45.833 0.00 0.00 0.00 2.32
348 349 4.765339 CCCTAATATCCGAAACCCCAAATC 59.235 45.833 0.00 0.00 0.00 2.17
349 350 4.765339 CCTAATATCCGAAACCCCAAATCC 59.235 45.833 0.00 0.00 0.00 3.01
350 351 3.963476 ATATCCGAAACCCCAAATCCA 57.037 42.857 0.00 0.00 0.00 3.41
351 352 2.846665 ATCCGAAACCCCAAATCCAT 57.153 45.000 0.00 0.00 0.00 3.41
352 353 1.846007 TCCGAAACCCCAAATCCATG 58.154 50.000 0.00 0.00 0.00 3.66
353 354 0.175531 CCGAAACCCCAAATCCATGC 59.824 55.000 0.00 0.00 0.00 4.06
354 355 0.894141 CGAAACCCCAAATCCATGCA 59.106 50.000 0.00 0.00 0.00 3.96
355 356 1.274728 CGAAACCCCAAATCCATGCAA 59.725 47.619 0.00 0.00 0.00 4.08
356 357 2.698803 GAAACCCCAAATCCATGCAAC 58.301 47.619 0.00 0.00 0.00 4.17
357 358 0.983467 AACCCCAAATCCATGCAACC 59.017 50.000 0.00 0.00 0.00 3.77
358 359 0.116940 ACCCCAAATCCATGCAACCT 59.883 50.000 0.00 0.00 0.00 3.50
359 360 1.278537 CCCCAAATCCATGCAACCTT 58.721 50.000 0.00 0.00 0.00 3.50
360 361 1.065998 CCCCAAATCCATGCAACCTTG 60.066 52.381 0.00 0.00 0.00 3.61
377 378 7.264448 CAACCTTGCAACGTGATTAAAATAG 57.736 36.000 0.00 0.00 0.00 1.73
378 379 5.399013 ACCTTGCAACGTGATTAAAATAGC 58.601 37.500 0.00 0.00 0.00 2.97
379 380 5.048364 ACCTTGCAACGTGATTAAAATAGCA 60.048 36.000 0.00 0.00 0.00 3.49
380 381 5.286082 CCTTGCAACGTGATTAAAATAGCAC 59.714 40.000 0.00 0.00 0.00 4.40
381 382 5.363979 TGCAACGTGATTAAAATAGCACA 57.636 34.783 0.00 0.00 0.00 4.57
382 383 5.948588 TGCAACGTGATTAAAATAGCACAT 58.051 33.333 0.00 0.00 0.00 3.21
383 384 7.078011 TGCAACGTGATTAAAATAGCACATA 57.922 32.000 0.00 0.00 0.00 2.29
384 385 7.702386 TGCAACGTGATTAAAATAGCACATAT 58.298 30.769 0.00 0.00 0.00 1.78
385 386 8.831550 TGCAACGTGATTAAAATAGCACATATA 58.168 29.630 0.00 0.00 0.00 0.86
386 387 9.825972 GCAACGTGATTAAAATAGCACATATAT 57.174 29.630 0.00 0.00 0.00 0.86
437 438 8.716646 ATTGCAAGTTTAATTTATAACCAGCC 57.283 30.769 4.94 0.00 0.00 4.85
438 439 7.233389 TGCAAGTTTAATTTATAACCAGCCA 57.767 32.000 0.00 0.00 0.00 4.75
439 440 7.846066 TGCAAGTTTAATTTATAACCAGCCAT 58.154 30.769 0.00 0.00 0.00 4.40
440 441 8.972127 TGCAAGTTTAATTTATAACCAGCCATA 58.028 29.630 0.00 0.00 0.00 2.74
441 442 9.463443 GCAAGTTTAATTTATAACCAGCCATAG 57.537 33.333 0.00 0.00 0.00 2.23
442 443 9.463443 CAAGTTTAATTTATAACCAGCCATAGC 57.537 33.333 0.00 0.00 40.32 2.97
443 444 8.760980 AGTTTAATTTATAACCAGCCATAGCA 57.239 30.769 0.00 0.00 43.56 3.49
444 445 9.367160 AGTTTAATTTATAACCAGCCATAGCAT 57.633 29.630 0.00 0.00 43.56 3.79
447 448 9.800572 TTAATTTATAACCAGCCATAGCATACA 57.199 29.630 0.00 0.00 43.56 2.29
448 449 7.928307 ATTTATAACCAGCCATAGCATACAG 57.072 36.000 0.00 0.00 43.56 2.74
449 450 2.645838 AACCAGCCATAGCATACAGG 57.354 50.000 0.00 0.00 43.56 4.00
450 451 1.806496 ACCAGCCATAGCATACAGGA 58.194 50.000 0.00 0.00 43.56 3.86
451 452 1.417890 ACCAGCCATAGCATACAGGAC 59.582 52.381 0.00 0.00 43.56 3.85
452 453 1.417517 CCAGCCATAGCATACAGGACA 59.582 52.381 0.00 0.00 43.56 4.02
453 454 2.487934 CAGCCATAGCATACAGGACAC 58.512 52.381 0.00 0.00 43.56 3.67
454 455 1.069204 AGCCATAGCATACAGGACACG 59.931 52.381 0.00 0.00 43.56 4.49
455 456 1.068588 GCCATAGCATACAGGACACGA 59.931 52.381 0.00 0.00 39.53 4.35
456 457 2.743938 CCATAGCATACAGGACACGAC 58.256 52.381 0.00 0.00 0.00 4.34
457 458 2.100749 CCATAGCATACAGGACACGACA 59.899 50.000 0.00 0.00 0.00 4.35
458 459 3.243873 CCATAGCATACAGGACACGACAT 60.244 47.826 0.00 0.00 0.00 3.06
459 460 4.022329 CCATAGCATACAGGACACGACATA 60.022 45.833 0.00 0.00 0.00 2.29
460 461 3.717400 AGCATACAGGACACGACATAG 57.283 47.619 0.00 0.00 0.00 2.23
461 462 2.128035 GCATACAGGACACGACATAGC 58.872 52.381 0.00 0.00 0.00 2.97
462 463 2.481276 GCATACAGGACACGACATAGCA 60.481 50.000 0.00 0.00 0.00 3.49
463 464 3.780902 CATACAGGACACGACATAGCAA 58.219 45.455 0.00 0.00 0.00 3.91
464 465 2.831685 ACAGGACACGACATAGCAAA 57.168 45.000 0.00 0.00 0.00 3.68
465 466 3.334583 ACAGGACACGACATAGCAAAT 57.665 42.857 0.00 0.00 0.00 2.32
466 467 3.674997 ACAGGACACGACATAGCAAATT 58.325 40.909 0.00 0.00 0.00 1.82
467 468 3.684788 ACAGGACACGACATAGCAAATTC 59.315 43.478 0.00 0.00 0.00 2.17
468 469 3.684305 CAGGACACGACATAGCAAATTCA 59.316 43.478 0.00 0.00 0.00 2.57
469 470 4.333649 CAGGACACGACATAGCAAATTCAT 59.666 41.667 0.00 0.00 0.00 2.57
470 471 5.523552 CAGGACACGACATAGCAAATTCATA 59.476 40.000 0.00 0.00 0.00 2.15
471 472 6.037062 CAGGACACGACATAGCAAATTCATAA 59.963 38.462 0.00 0.00 0.00 1.90
472 473 6.597672 AGGACACGACATAGCAAATTCATAAA 59.402 34.615 0.00 0.00 0.00 1.40
473 474 7.120579 AGGACACGACATAGCAAATTCATAAAA 59.879 33.333 0.00 0.00 0.00 1.52
474 475 7.429340 GGACACGACATAGCAAATTCATAAAAG 59.571 37.037 0.00 0.00 0.00 2.27
475 476 6.747280 ACACGACATAGCAAATTCATAAAAGC 59.253 34.615 0.00 0.00 0.00 3.51
476 477 6.968904 CACGACATAGCAAATTCATAAAAGCT 59.031 34.615 0.00 0.00 36.20 3.74
477 478 7.164826 CACGACATAGCAAATTCATAAAAGCTC 59.835 37.037 0.00 0.00 33.83 4.09
478 479 7.148255 ACGACATAGCAAATTCATAAAAGCTCA 60.148 33.333 0.00 0.00 33.83 4.26
479 480 7.859377 CGACATAGCAAATTCATAAAAGCTCAT 59.141 33.333 0.00 0.00 33.83 2.90
480 481 9.178427 GACATAGCAAATTCATAAAAGCTCATC 57.822 33.333 0.00 0.00 33.83 2.92
520 526 6.576185 TCTTTACCTACTAATAAACCGGCTG 58.424 40.000 0.00 0.00 0.00 4.85
559 571 4.316377 CGTCGTCATCAGTTTTGCAAAAAC 60.316 41.667 25.40 17.12 0.00 2.43
560 572 4.560819 GTCGTCATCAGTTTTGCAAAAACA 59.439 37.500 25.40 12.80 32.81 2.83
627 639 2.804697 AATTTGGGGAAACGTTTCGG 57.195 45.000 29.23 0.00 38.06 4.30
634 646 2.618241 GGGGAAACGTTTCGGTTTTACT 59.382 45.455 29.23 0.00 36.71 2.24
670 682 5.168647 AGTTTGGTATATTCAACCCGTGA 57.831 39.130 0.00 0.00 36.06 4.35
672 684 6.891388 AGTTTGGTATATTCAACCCGTGATA 58.109 36.000 0.00 0.00 35.70 2.15
814 837 2.427245 CGATGAGGAAGGCCGGAGT 61.427 63.158 5.05 0.00 39.96 3.85
867 890 1.056660 GACAGGGTGGTGAGGAAGAA 58.943 55.000 0.00 0.00 0.00 2.52
914 939 4.479993 GACCCAGGCATGCTCGCT 62.480 66.667 18.92 3.01 0.00 4.93
1735 1879 3.494626 ACTATGACATTCCTAAATGCGCG 59.505 43.478 0.00 0.00 45.16 6.86
1758 1903 6.376978 CGAGTAAATACTACTGGGATTACGG 58.623 44.000 0.00 0.00 36.50 4.02
1762 1907 6.736110 AAATACTACTGGGATTACGGCTAA 57.264 37.500 0.00 0.00 0.00 3.09
1763 1908 5.718724 ATACTACTGGGATTACGGCTAAC 57.281 43.478 0.00 0.00 0.00 2.34
1808 1955 5.880341 AGCAATTCTCGGTTTAAATACTGC 58.120 37.500 0.00 0.00 0.00 4.40
1901 2048 6.319658 ACTGCACATTCTGAAAGTATATTGGG 59.680 38.462 0.00 0.00 33.76 4.12
2200 2348 3.755378 AGCTCCATTTTGTCTTGCTACAG 59.245 43.478 0.00 0.00 0.00 2.74
2330 2479 8.801715 TCTTCATTTCTACAACTTCATTTTGC 57.198 30.769 0.00 0.00 0.00 3.68
2331 2480 8.412456 TCTTCATTTCTACAACTTCATTTTGCA 58.588 29.630 0.00 0.00 0.00 4.08
2332 2481 8.939201 TTCATTTCTACAACTTCATTTTGCAA 57.061 26.923 0.00 0.00 0.00 4.08
2333 2482 9.545105 TTCATTTCTACAACTTCATTTTGCAAT 57.455 25.926 0.00 0.00 0.00 3.56
2336 2485 9.979578 ATTTCTACAACTTCATTTTGCAATACA 57.020 25.926 0.00 0.00 0.00 2.29
2337 2486 9.809096 TTTCTACAACTTCATTTTGCAATACAA 57.191 25.926 0.00 0.00 36.13 2.41
2338 2487 9.809096 TTCTACAACTTCATTTTGCAATACAAA 57.191 25.926 0.00 0.00 46.51 2.83
2367 2516 7.818997 AGATCACTATTATTACGAGTGGTGA 57.181 36.000 0.00 0.00 40.81 4.02
2368 2517 8.234136 AGATCACTATTATTACGAGTGGTGAA 57.766 34.615 0.00 0.00 40.81 3.18
2369 2518 8.692710 AGATCACTATTATTACGAGTGGTGAAA 58.307 33.333 0.00 0.00 40.81 2.69
2574 2724 6.124088 AGTTTGATATTTTTCTAGGCGCAG 57.876 37.500 10.83 0.00 0.00 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.810545 GATGCTCTCAAGTAGTCTAGTAAAAAT 57.189 33.333 0.00 0.00 0.00 1.82
4 5 8.265764 TGTAGATGCTCTCAAGTAGTCTAGTAA 58.734 37.037 0.00 0.00 0.00 2.24
5 6 7.793036 TGTAGATGCTCTCAAGTAGTCTAGTA 58.207 38.462 0.00 0.00 0.00 1.82
6 7 6.654959 TGTAGATGCTCTCAAGTAGTCTAGT 58.345 40.000 0.00 0.00 0.00 2.57
7 8 7.414436 GTTGTAGATGCTCTCAAGTAGTCTAG 58.586 42.308 0.00 0.00 0.00 2.43
8 9 6.319152 GGTTGTAGATGCTCTCAAGTAGTCTA 59.681 42.308 0.00 0.00 0.00 2.59
9 10 5.126384 GGTTGTAGATGCTCTCAAGTAGTCT 59.874 44.000 0.00 0.00 0.00 3.24
10 11 5.344884 GGTTGTAGATGCTCTCAAGTAGTC 58.655 45.833 0.00 0.00 0.00 2.59
11 12 4.142359 CGGTTGTAGATGCTCTCAAGTAGT 60.142 45.833 0.00 0.00 0.00 2.73
12 13 4.355437 CGGTTGTAGATGCTCTCAAGTAG 58.645 47.826 0.00 0.00 0.00 2.57
13 14 3.428999 GCGGTTGTAGATGCTCTCAAGTA 60.429 47.826 0.00 0.00 0.00 2.24
14 15 2.675317 GCGGTTGTAGATGCTCTCAAGT 60.675 50.000 0.00 0.00 0.00 3.16
15 16 1.929836 GCGGTTGTAGATGCTCTCAAG 59.070 52.381 0.00 0.00 0.00 3.02
16 17 1.735700 CGCGGTTGTAGATGCTCTCAA 60.736 52.381 0.00 0.00 0.00 3.02
17 18 0.179137 CGCGGTTGTAGATGCTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
18 19 0.100682 TCGCGGTTGTAGATGCTCTC 59.899 55.000 6.13 0.00 0.00 3.20
19 20 0.747255 ATCGCGGTTGTAGATGCTCT 59.253 50.000 6.13 0.00 0.00 4.09
20 21 0.855349 CATCGCGGTTGTAGATGCTC 59.145 55.000 6.13 0.00 35.89 4.26
21 22 0.175760 ACATCGCGGTTGTAGATGCT 59.824 50.000 6.13 0.00 43.91 3.79
22 23 0.577269 GACATCGCGGTTGTAGATGC 59.423 55.000 14.19 0.58 43.91 3.91
23 24 1.202417 AGGACATCGCGGTTGTAGATG 60.202 52.381 14.19 7.72 45.14 2.90
24 25 1.112113 AGGACATCGCGGTTGTAGAT 58.888 50.000 14.19 2.97 0.00 1.98
25 26 1.753930 TAGGACATCGCGGTTGTAGA 58.246 50.000 14.19 2.41 0.00 2.59
26 27 2.572191 TTAGGACATCGCGGTTGTAG 57.428 50.000 14.19 0.00 0.00 2.74
27 28 3.530265 AATTAGGACATCGCGGTTGTA 57.470 42.857 14.19 1.61 0.00 2.41
28 29 2.396590 AATTAGGACATCGCGGTTGT 57.603 45.000 14.12 14.12 0.00 3.32
29 30 2.675844 TCAAATTAGGACATCGCGGTTG 59.324 45.455 6.13 7.40 0.00 3.77
30 31 2.676342 GTCAAATTAGGACATCGCGGTT 59.324 45.455 6.13 0.00 35.36 4.44
31 32 2.277084 GTCAAATTAGGACATCGCGGT 58.723 47.619 6.13 0.00 35.36 5.68
32 33 1.597663 GGTCAAATTAGGACATCGCGG 59.402 52.381 6.13 0.00 37.00 6.46
33 34 1.597663 GGGTCAAATTAGGACATCGCG 59.402 52.381 0.00 0.00 37.00 5.87
34 35 2.872858 GAGGGTCAAATTAGGACATCGC 59.127 50.000 11.09 3.11 37.00 4.58
35 36 4.122776 CAGAGGGTCAAATTAGGACATCG 58.877 47.826 11.09 0.00 37.00 3.84
36 37 5.104259 ACAGAGGGTCAAATTAGGACATC 57.896 43.478 11.09 8.60 37.00 3.06
37 38 6.831664 ATACAGAGGGTCAAATTAGGACAT 57.168 37.500 11.09 1.26 37.00 3.06
38 39 7.931015 ATATACAGAGGGTCAAATTAGGACA 57.069 36.000 11.09 0.00 37.00 4.02
41 42 9.220767 GCTTTATATACAGAGGGTCAAATTAGG 57.779 37.037 0.00 0.00 0.00 2.69
42 43 9.778741 TGCTTTATATACAGAGGGTCAAATTAG 57.221 33.333 0.00 0.00 0.00 1.73
44 45 9.125026 CTTGCTTTATATACAGAGGGTCAAATT 57.875 33.333 0.00 0.00 0.00 1.82
45 46 8.494433 TCTTGCTTTATATACAGAGGGTCAAAT 58.506 33.333 0.00 0.00 0.00 2.32
46 47 7.857456 TCTTGCTTTATATACAGAGGGTCAAA 58.143 34.615 0.00 0.00 0.00 2.69
47 48 7.432148 TCTTGCTTTATATACAGAGGGTCAA 57.568 36.000 0.00 0.00 0.00 3.18
48 49 7.432148 TTCTTGCTTTATATACAGAGGGTCA 57.568 36.000 0.00 0.00 0.00 4.02
49 50 8.732746 TTTTCTTGCTTTATATACAGAGGGTC 57.267 34.615 0.00 0.00 0.00 4.46
63 64 9.436957 TCTATCTTCGACTTATTTTCTTGCTTT 57.563 29.630 0.00 0.00 0.00 3.51
64 65 9.436957 TTCTATCTTCGACTTATTTTCTTGCTT 57.563 29.630 0.00 0.00 0.00 3.91
65 66 9.092876 CTTCTATCTTCGACTTATTTTCTTGCT 57.907 33.333 0.00 0.00 0.00 3.91
66 67 9.088512 TCTTCTATCTTCGACTTATTTTCTTGC 57.911 33.333 0.00 0.00 0.00 4.01
69 70 9.589111 GGTTCTTCTATCTTCGACTTATTTTCT 57.411 33.333 0.00 0.00 0.00 2.52
70 71 8.819015 GGGTTCTTCTATCTTCGACTTATTTTC 58.181 37.037 0.00 0.00 0.00 2.29
71 72 8.319146 TGGGTTCTTCTATCTTCGACTTATTTT 58.681 33.333 0.00 0.00 0.00 1.82
72 73 7.848128 TGGGTTCTTCTATCTTCGACTTATTT 58.152 34.615 0.00 0.00 0.00 1.40
73 74 7.342284 TCTGGGTTCTTCTATCTTCGACTTATT 59.658 37.037 0.00 0.00 0.00 1.40
74 75 6.834451 TCTGGGTTCTTCTATCTTCGACTTAT 59.166 38.462 0.00 0.00 0.00 1.73
75 76 6.185511 TCTGGGTTCTTCTATCTTCGACTTA 58.814 40.000 0.00 0.00 0.00 2.24
76 77 5.017490 TCTGGGTTCTTCTATCTTCGACTT 58.983 41.667 0.00 0.00 0.00 3.01
77 78 4.601084 TCTGGGTTCTTCTATCTTCGACT 58.399 43.478 0.00 0.00 0.00 4.18
78 79 4.985538 TCTGGGTTCTTCTATCTTCGAC 57.014 45.455 0.00 0.00 0.00 4.20
79 80 5.069251 GGAATCTGGGTTCTTCTATCTTCGA 59.931 44.000 0.00 0.00 0.00 3.71
80 81 5.163405 TGGAATCTGGGTTCTTCTATCTTCG 60.163 44.000 0.00 0.00 0.00 3.79
81 82 6.240549 TGGAATCTGGGTTCTTCTATCTTC 57.759 41.667 0.00 0.00 0.00 2.87
82 83 6.642733 TTGGAATCTGGGTTCTTCTATCTT 57.357 37.500 0.00 0.00 0.00 2.40
83 84 6.642733 TTTGGAATCTGGGTTCTTCTATCT 57.357 37.500 0.00 0.00 0.00 1.98
84 85 7.056635 TCATTTGGAATCTGGGTTCTTCTATC 58.943 38.462 0.00 0.00 0.00 2.08
85 86 6.973642 TCATTTGGAATCTGGGTTCTTCTAT 58.026 36.000 0.00 0.00 0.00 1.98
86 87 6.387192 TCATTTGGAATCTGGGTTCTTCTA 57.613 37.500 0.00 0.00 0.00 2.10
87 88 5.261040 TCATTTGGAATCTGGGTTCTTCT 57.739 39.130 0.00 0.00 0.00 2.85
88 89 5.711976 TCTTCATTTGGAATCTGGGTTCTTC 59.288 40.000 0.00 0.00 34.32 2.87
89 90 5.644188 TCTTCATTTGGAATCTGGGTTCTT 58.356 37.500 0.00 0.00 34.32 2.52
90 91 5.261040 TCTTCATTTGGAATCTGGGTTCT 57.739 39.130 0.00 0.00 34.32 3.01
91 92 5.982890 TTCTTCATTTGGAATCTGGGTTC 57.017 39.130 0.00 0.00 34.32 3.62
92 93 6.296030 CCATTTCTTCATTTGGAATCTGGGTT 60.296 38.462 0.00 0.00 34.32 4.11
93 94 5.188359 CCATTTCTTCATTTGGAATCTGGGT 59.812 40.000 0.00 0.00 34.32 4.51
94 95 5.422970 TCCATTTCTTCATTTGGAATCTGGG 59.577 40.000 0.00 0.00 35.38 4.45
95 96 6.534475 TCCATTTCTTCATTTGGAATCTGG 57.466 37.500 0.00 0.00 35.38 3.86
96 97 8.092687 AGTTTCCATTTCTTCATTTGGAATCTG 58.907 33.333 11.41 0.00 45.14 2.90
97 98 8.198807 AGTTTCCATTTCTTCATTTGGAATCT 57.801 30.769 4.24 6.26 45.14 2.40
98 99 7.274250 CGAGTTTCCATTTCTTCATTTGGAATC 59.726 37.037 4.24 4.26 45.14 2.52
99 100 7.039784 TCGAGTTTCCATTTCTTCATTTGGAAT 60.040 33.333 4.24 0.00 45.14 3.01
100 101 6.264292 TCGAGTTTCCATTTCTTCATTTGGAA 59.736 34.615 0.00 0.00 44.38 3.53
101 102 5.767665 TCGAGTTTCCATTTCTTCATTTGGA 59.232 36.000 0.00 0.00 36.49 3.53
102 103 6.012658 TCGAGTTTCCATTTCTTCATTTGG 57.987 37.500 0.00 0.00 0.00 3.28
103 104 7.928908 TTTCGAGTTTCCATTTCTTCATTTG 57.071 32.000 0.00 0.00 0.00 2.32
104 105 7.653311 CCTTTTCGAGTTTCCATTTCTTCATTT 59.347 33.333 0.00 0.00 0.00 2.32
105 106 7.014230 TCCTTTTCGAGTTTCCATTTCTTCATT 59.986 33.333 0.00 0.00 0.00 2.57
106 107 6.490040 TCCTTTTCGAGTTTCCATTTCTTCAT 59.510 34.615 0.00 0.00 0.00 2.57
107 108 5.825679 TCCTTTTCGAGTTTCCATTTCTTCA 59.174 36.000 0.00 0.00 0.00 3.02
108 109 6.313744 TCCTTTTCGAGTTTCCATTTCTTC 57.686 37.500 0.00 0.00 0.00 2.87
109 110 6.071896 GGATCCTTTTCGAGTTTCCATTTCTT 60.072 38.462 3.84 0.00 0.00 2.52
110 111 5.416013 GGATCCTTTTCGAGTTTCCATTTCT 59.584 40.000 3.84 0.00 0.00 2.52
111 112 5.641709 GGATCCTTTTCGAGTTTCCATTTC 58.358 41.667 3.84 0.00 0.00 2.17
112 113 4.156008 CGGATCCTTTTCGAGTTTCCATTT 59.844 41.667 10.75 0.00 0.00 2.32
113 114 3.689649 CGGATCCTTTTCGAGTTTCCATT 59.310 43.478 10.75 0.00 0.00 3.16
114 115 3.270877 CGGATCCTTTTCGAGTTTCCAT 58.729 45.455 10.75 0.00 0.00 3.41
115 116 2.038033 ACGGATCCTTTTCGAGTTTCCA 59.962 45.455 10.75 0.00 0.00 3.53
116 117 2.696506 ACGGATCCTTTTCGAGTTTCC 58.303 47.619 10.75 0.00 0.00 3.13
117 118 4.212636 TCAAACGGATCCTTTTCGAGTTTC 59.787 41.667 13.05 0.00 30.20 2.78
118 119 4.131596 TCAAACGGATCCTTTTCGAGTTT 58.868 39.130 13.05 9.17 31.67 2.66
119 120 3.735591 TCAAACGGATCCTTTTCGAGTT 58.264 40.909 13.05 3.35 0.00 3.01
120 121 3.396260 TCAAACGGATCCTTTTCGAGT 57.604 42.857 13.05 0.00 0.00 4.18
121 122 5.050091 CCATATCAAACGGATCCTTTTCGAG 60.050 44.000 13.05 3.57 37.44 4.04
122 123 4.814234 CCATATCAAACGGATCCTTTTCGA 59.186 41.667 13.05 13.62 37.44 3.71
123 124 4.814234 TCCATATCAAACGGATCCTTTTCG 59.186 41.667 13.05 9.34 37.44 3.46
124 125 6.055588 TCTCCATATCAAACGGATCCTTTTC 58.944 40.000 13.05 0.00 37.44 2.29
125 126 6.001449 TCTCCATATCAAACGGATCCTTTT 57.999 37.500 10.33 10.33 37.44 2.27
126 127 5.630415 TCTCCATATCAAACGGATCCTTT 57.370 39.130 10.75 3.43 37.44 3.11
127 128 5.630415 TTCTCCATATCAAACGGATCCTT 57.370 39.130 10.75 0.00 37.44 3.36
128 129 5.366768 TCTTTCTCCATATCAAACGGATCCT 59.633 40.000 10.75 0.00 37.44 3.24
129 130 5.611374 TCTTTCTCCATATCAAACGGATCC 58.389 41.667 0.00 0.00 37.44 3.36
130 131 7.736447 AATCTTTCTCCATATCAAACGGATC 57.264 36.000 0.00 0.00 37.44 3.36
131 132 7.995488 AGAAATCTTTCTCCATATCAAACGGAT 59.005 33.333 0.00 0.00 43.72 4.18
132 133 7.338710 AGAAATCTTTCTCCATATCAAACGGA 58.661 34.615 0.00 0.00 43.72 4.69
133 134 7.559590 AGAAATCTTTCTCCATATCAAACGG 57.440 36.000 0.00 0.00 43.72 4.44
134 135 8.887717 AGAAGAAATCTTTCTCCATATCAAACG 58.112 33.333 5.69 0.00 46.22 3.60
161 162 9.541143 TGCAGATCAAAATCACGTCTTATAATA 57.459 29.630 0.00 0.00 34.07 0.98
162 163 8.437360 TGCAGATCAAAATCACGTCTTATAAT 57.563 30.769 0.00 0.00 34.07 1.28
163 164 7.841915 TGCAGATCAAAATCACGTCTTATAA 57.158 32.000 0.00 0.00 34.07 0.98
164 165 9.710900 ATATGCAGATCAAAATCACGTCTTATA 57.289 29.630 0.00 0.00 34.07 0.98
165 166 6.932356 ATGCAGATCAAAATCACGTCTTAT 57.068 33.333 0.00 0.00 34.07 1.73
166 167 7.495606 ACATATGCAGATCAAAATCACGTCTTA 59.504 33.333 1.58 0.00 34.07 2.10
167 168 6.317140 ACATATGCAGATCAAAATCACGTCTT 59.683 34.615 1.58 0.00 34.07 3.01
168 169 5.819379 ACATATGCAGATCAAAATCACGTCT 59.181 36.000 1.58 0.00 34.07 4.18
169 170 6.052840 ACATATGCAGATCAAAATCACGTC 57.947 37.500 1.58 0.00 34.07 4.34
170 171 6.441093 AACATATGCAGATCAAAATCACGT 57.559 33.333 1.58 0.00 34.07 4.49
171 172 6.197655 CCAAACATATGCAGATCAAAATCACG 59.802 38.462 1.58 0.00 34.07 4.35
172 173 7.037438 ACCAAACATATGCAGATCAAAATCAC 58.963 34.615 1.58 0.00 34.07 3.06
173 174 7.172868 ACCAAACATATGCAGATCAAAATCA 57.827 32.000 1.58 0.00 34.07 2.57
174 175 9.585099 TTTACCAAACATATGCAGATCAAAATC 57.415 29.630 1.58 0.00 0.00 2.17
179 180 8.352201 GCTTATTTACCAAACATATGCAGATCA 58.648 33.333 1.58 0.00 0.00 2.92
180 181 8.352201 TGCTTATTTACCAAACATATGCAGATC 58.648 33.333 1.58 0.00 31.88 2.75
181 182 8.236585 TGCTTATTTACCAAACATATGCAGAT 57.763 30.769 1.58 0.00 31.88 2.90
182 183 7.637631 TGCTTATTTACCAAACATATGCAGA 57.362 32.000 1.58 0.00 31.88 4.26
183 184 8.876275 ATTGCTTATTTACCAAACATATGCAG 57.124 30.769 1.58 0.00 35.89 4.41
184 185 8.694540 AGATTGCTTATTTACCAAACATATGCA 58.305 29.630 1.58 0.00 33.85 3.96
185 186 9.533253 AAGATTGCTTATTTACCAAACATATGC 57.467 29.630 1.58 0.00 31.07 3.14
189 190 8.184192 CGAGAAGATTGCTTATTTACCAAACAT 58.816 33.333 0.00 0.00 33.61 2.71
190 191 7.174253 ACGAGAAGATTGCTTATTTACCAAACA 59.826 33.333 0.00 0.00 33.61 2.83
191 192 7.527457 ACGAGAAGATTGCTTATTTACCAAAC 58.473 34.615 0.00 0.00 33.61 2.93
192 193 7.681939 ACGAGAAGATTGCTTATTTACCAAA 57.318 32.000 0.00 0.00 33.61 3.28
193 194 7.681939 AACGAGAAGATTGCTTATTTACCAA 57.318 32.000 0.00 0.00 33.61 3.67
194 195 7.681939 AAACGAGAAGATTGCTTATTTACCA 57.318 32.000 0.00 0.00 33.61 3.25
202 203 9.330063 TGATATGATTAAACGAGAAGATTGCTT 57.670 29.630 0.00 0.00 36.96 3.91
203 204 8.893219 TGATATGATTAAACGAGAAGATTGCT 57.107 30.769 0.00 0.00 0.00 3.91
231 232 9.829507 TCATGTTTTAATTGAACACTTCCAATT 57.170 25.926 10.28 0.00 43.15 2.32
232 233 9.829507 TTCATGTTTTAATTGAACACTTCCAAT 57.170 25.926 10.28 0.00 39.57 3.16
233 234 9.658799 TTTCATGTTTTAATTGAACACTTCCAA 57.341 25.926 10.28 0.00 39.57 3.53
234 235 9.658799 TTTTCATGTTTTAATTGAACACTTCCA 57.341 25.926 10.28 0.00 39.57 3.53
235 236 9.914923 GTTTTCATGTTTTAATTGAACACTTCC 57.085 29.630 10.28 0.00 39.57 3.46
236 237 9.618410 CGTTTTCATGTTTTAATTGAACACTTC 57.382 29.630 10.28 0.00 39.57 3.01
237 238 9.145865 ACGTTTTCATGTTTTAATTGAACACTT 57.854 25.926 10.28 0.00 39.57 3.16
238 239 8.696410 ACGTTTTCATGTTTTAATTGAACACT 57.304 26.923 10.28 0.91 39.57 3.55
239 240 8.053653 GGACGTTTTCATGTTTTAATTGAACAC 58.946 33.333 10.28 0.00 39.57 3.32
240 241 7.759886 TGGACGTTTTCATGTTTTAATTGAACA 59.240 29.630 10.43 10.43 40.86 3.18
241 242 8.121167 TGGACGTTTTCATGTTTTAATTGAAC 57.879 30.769 0.00 0.00 0.00 3.18
242 243 8.759641 CATGGACGTTTTCATGTTTTAATTGAA 58.240 29.630 15.00 0.00 36.82 2.69
243 244 7.383572 CCATGGACGTTTTCATGTTTTAATTGA 59.616 33.333 5.56 0.00 39.12 2.57
244 245 7.383572 TCCATGGACGTTTTCATGTTTTAATTG 59.616 33.333 11.44 7.62 39.12 2.32
245 246 7.383843 GTCCATGGACGTTTTCATGTTTTAATT 59.616 33.333 28.52 0.00 39.12 1.40
246 247 6.866248 GTCCATGGACGTTTTCATGTTTTAAT 59.134 34.615 28.52 0.00 39.12 1.40
247 248 6.210078 GTCCATGGACGTTTTCATGTTTTAA 58.790 36.000 28.52 0.00 39.12 1.52
248 249 5.764131 GTCCATGGACGTTTTCATGTTTTA 58.236 37.500 28.52 0.00 39.12 1.52
249 250 4.616953 GTCCATGGACGTTTTCATGTTTT 58.383 39.130 28.52 0.00 39.12 2.43
250 251 4.237349 GTCCATGGACGTTTTCATGTTT 57.763 40.909 28.52 0.00 39.12 2.83
251 252 3.915437 GTCCATGGACGTTTTCATGTT 57.085 42.857 28.52 0.00 39.12 2.71
253 254 4.899709 ACGTGTCCATGGACGTTTTCATG 61.900 47.826 34.01 23.98 46.27 3.07
254 255 2.808933 ACGTGTCCATGGACGTTTTCAT 60.809 45.455 34.01 15.85 46.27 2.57
255 256 1.473610 ACGTGTCCATGGACGTTTTCA 60.474 47.619 34.01 17.09 46.27 2.69
256 257 1.223187 ACGTGTCCATGGACGTTTTC 58.777 50.000 34.01 21.36 46.27 2.29
257 258 3.390003 ACGTGTCCATGGACGTTTT 57.610 47.368 34.01 18.72 46.27 2.43
269 270 0.109226 GCACTGTCTAGGGACGTGTC 60.109 60.000 0.00 0.00 44.83 3.67
270 271 1.533469 GGCACTGTCTAGGGACGTGT 61.533 60.000 0.00 6.13 44.83 4.49
271 272 1.215647 GGCACTGTCTAGGGACGTG 59.784 63.158 0.00 12.76 44.83 4.49
272 273 1.076906 AGGCACTGTCTAGGGACGT 59.923 57.895 0.00 0.00 41.66 4.34
273 274 4.019983 AGGCACTGTCTAGGGACG 57.980 61.111 0.00 0.00 41.66 4.79
284 285 0.546267 ATGAGAGGTGACCAGGCACT 60.546 55.000 3.63 0.00 43.88 4.40
285 286 0.326264 AATGAGAGGTGACCAGGCAC 59.674 55.000 3.63 0.00 38.05 5.01
286 287 1.067295 AAATGAGAGGTGACCAGGCA 58.933 50.000 3.63 0.00 0.00 4.75
287 288 1.457346 CAAATGAGAGGTGACCAGGC 58.543 55.000 3.63 0.00 0.00 4.85
288 289 1.952367 GCCAAATGAGAGGTGACCAGG 60.952 57.143 3.63 0.00 0.00 4.45
289 290 1.457346 GCCAAATGAGAGGTGACCAG 58.543 55.000 3.63 0.00 0.00 4.00
290 291 0.038166 GGCCAAATGAGAGGTGACCA 59.962 55.000 3.63 0.00 0.00 4.02
291 292 1.026718 CGGCCAAATGAGAGGTGACC 61.027 60.000 2.24 0.00 0.00 4.02
292 293 1.648467 GCGGCCAAATGAGAGGTGAC 61.648 60.000 2.24 0.00 0.00 3.67
293 294 1.377202 GCGGCCAAATGAGAGGTGA 60.377 57.895 2.24 0.00 0.00 4.02
294 295 2.753966 CGCGGCCAAATGAGAGGTG 61.754 63.158 2.24 0.00 0.00 4.00
295 296 2.436646 CGCGGCCAAATGAGAGGT 60.437 61.111 2.24 0.00 0.00 3.85
296 297 2.436646 ACGCGGCCAAATGAGAGG 60.437 61.111 12.47 0.00 0.00 3.69
297 298 1.699656 CTGACGCGGCCAAATGAGAG 61.700 60.000 10.82 0.00 0.00 3.20
298 299 1.741401 CTGACGCGGCCAAATGAGA 60.741 57.895 10.82 0.00 0.00 3.27
299 300 1.699656 CTCTGACGCGGCCAAATGAG 61.700 60.000 10.82 5.53 0.00 2.90
300 301 1.741401 CTCTGACGCGGCCAAATGA 60.741 57.895 10.82 0.00 0.00 2.57
301 302 2.787249 CTCTGACGCGGCCAAATG 59.213 61.111 10.82 0.00 0.00 2.32
302 303 3.127533 GCTCTGACGCGGCCAAAT 61.128 61.111 10.82 0.00 0.00 2.32
323 324 1.353358 GGGGTTTCGGATATTAGGGGG 59.647 57.143 0.00 0.00 0.00 5.40
324 325 2.059490 TGGGGTTTCGGATATTAGGGG 58.941 52.381 0.00 0.00 0.00 4.79
325 326 3.868619 TTGGGGTTTCGGATATTAGGG 57.131 47.619 0.00 0.00 0.00 3.53
326 327 4.765339 GGATTTGGGGTTTCGGATATTAGG 59.235 45.833 0.00 0.00 0.00 2.69
327 328 5.381757 TGGATTTGGGGTTTCGGATATTAG 58.618 41.667 0.00 0.00 0.00 1.73
328 329 5.390087 TGGATTTGGGGTTTCGGATATTA 57.610 39.130 0.00 0.00 0.00 0.98
329 330 4.258457 TGGATTTGGGGTTTCGGATATT 57.742 40.909 0.00 0.00 0.00 1.28
330 331 3.963476 TGGATTTGGGGTTTCGGATAT 57.037 42.857 0.00 0.00 0.00 1.63
331 332 3.561143 CATGGATTTGGGGTTTCGGATA 58.439 45.455 0.00 0.00 0.00 2.59
332 333 2.387757 CATGGATTTGGGGTTTCGGAT 58.612 47.619 0.00 0.00 0.00 4.18
333 334 1.846007 CATGGATTTGGGGTTTCGGA 58.154 50.000 0.00 0.00 0.00 4.55
334 335 0.175531 GCATGGATTTGGGGTTTCGG 59.824 55.000 0.00 0.00 0.00 4.30
335 336 0.894141 TGCATGGATTTGGGGTTTCG 59.106 50.000 0.00 0.00 0.00 3.46
336 337 2.615240 GGTTGCATGGATTTGGGGTTTC 60.615 50.000 0.00 0.00 0.00 2.78
337 338 1.350684 GGTTGCATGGATTTGGGGTTT 59.649 47.619 0.00 0.00 0.00 3.27
338 339 0.983467 GGTTGCATGGATTTGGGGTT 59.017 50.000 0.00 0.00 0.00 4.11
339 340 0.116940 AGGTTGCATGGATTTGGGGT 59.883 50.000 0.00 0.00 0.00 4.95
340 341 1.065998 CAAGGTTGCATGGATTTGGGG 60.066 52.381 0.00 0.00 0.00 4.96
341 342 2.389962 CAAGGTTGCATGGATTTGGG 57.610 50.000 0.00 0.00 0.00 4.12
353 354 6.183359 GCTATTTTAATCACGTTGCAAGGTTG 60.183 38.462 21.48 16.20 0.00 3.77
354 355 5.861787 GCTATTTTAATCACGTTGCAAGGTT 59.138 36.000 21.48 10.69 0.00 3.50
355 356 5.048364 TGCTATTTTAATCACGTTGCAAGGT 60.048 36.000 18.62 18.62 0.00 3.50
356 357 5.286082 GTGCTATTTTAATCACGTTGCAAGG 59.714 40.000 17.21 17.21 0.00 3.61
357 358 5.855925 TGTGCTATTTTAATCACGTTGCAAG 59.144 36.000 0.00 0.00 32.48 4.01
358 359 5.763088 TGTGCTATTTTAATCACGTTGCAA 58.237 33.333 0.00 0.00 32.48 4.08
359 360 5.363979 TGTGCTATTTTAATCACGTTGCA 57.636 34.783 0.00 0.00 32.48 4.08
360 361 9.825972 ATATATGTGCTATTTTAATCACGTTGC 57.174 29.630 0.00 0.00 31.84 4.17
411 412 9.810545 GGCTGGTTATAAATTAAACTTGCAATA 57.189 29.630 0.00 0.00 0.00 1.90
412 413 8.317679 TGGCTGGTTATAAATTAAACTTGCAAT 58.682 29.630 0.00 0.00 0.00 3.56
413 414 7.671302 TGGCTGGTTATAAATTAAACTTGCAA 58.329 30.769 0.00 0.00 0.00 4.08
414 415 7.233389 TGGCTGGTTATAAATTAAACTTGCA 57.767 32.000 0.00 0.00 0.00 4.08
415 416 9.463443 CTATGGCTGGTTATAAATTAAACTTGC 57.537 33.333 0.00 0.00 0.00 4.01
416 417 9.463443 GCTATGGCTGGTTATAAATTAAACTTG 57.537 33.333 0.00 0.00 35.22 3.16
417 418 9.196139 TGCTATGGCTGGTTATAAATTAAACTT 57.804 29.630 1.68 0.00 39.59 2.66
418 419 8.760980 TGCTATGGCTGGTTATAAATTAAACT 57.239 30.769 1.68 0.00 39.59 2.66
421 422 9.800572 TGTATGCTATGGCTGGTTATAAATTAA 57.199 29.630 1.68 0.00 39.59 1.40
422 423 9.448438 CTGTATGCTATGGCTGGTTATAAATTA 57.552 33.333 1.68 0.00 39.59 1.40
423 424 7.394359 CCTGTATGCTATGGCTGGTTATAAATT 59.606 37.037 1.68 0.00 39.59 1.82
424 425 6.886459 CCTGTATGCTATGGCTGGTTATAAAT 59.114 38.462 1.68 0.00 39.59 1.40
425 426 6.043822 TCCTGTATGCTATGGCTGGTTATAAA 59.956 38.462 1.68 0.00 39.59 1.40
426 427 5.546110 TCCTGTATGCTATGGCTGGTTATAA 59.454 40.000 1.68 0.00 39.59 0.98
427 428 5.046591 GTCCTGTATGCTATGGCTGGTTATA 60.047 44.000 1.68 0.00 39.59 0.98
428 429 3.909995 TCCTGTATGCTATGGCTGGTTAT 59.090 43.478 1.68 0.00 39.59 1.89
429 430 3.071023 GTCCTGTATGCTATGGCTGGTTA 59.929 47.826 1.68 0.00 39.59 2.85
430 431 2.126882 TCCTGTATGCTATGGCTGGTT 58.873 47.619 1.68 0.00 39.59 3.67
431 432 1.417890 GTCCTGTATGCTATGGCTGGT 59.582 52.381 1.68 0.00 39.59 4.00
432 433 1.417517 TGTCCTGTATGCTATGGCTGG 59.582 52.381 1.68 0.00 39.59 4.85
433 434 2.487934 GTGTCCTGTATGCTATGGCTG 58.512 52.381 1.68 0.00 39.59 4.85
434 435 1.069204 CGTGTCCTGTATGCTATGGCT 59.931 52.381 1.68 0.00 39.59 4.75
435 436 1.068588 TCGTGTCCTGTATGCTATGGC 59.931 52.381 0.00 0.00 39.26 4.40
436 437 2.100749 TGTCGTGTCCTGTATGCTATGG 59.899 50.000 0.00 0.00 0.00 2.74
437 438 3.436700 TGTCGTGTCCTGTATGCTATG 57.563 47.619 0.00 0.00 0.00 2.23
438 439 4.321304 GCTATGTCGTGTCCTGTATGCTAT 60.321 45.833 0.00 0.00 0.00 2.97
439 440 3.004419 GCTATGTCGTGTCCTGTATGCTA 59.996 47.826 0.00 0.00 0.00 3.49
440 441 2.223829 GCTATGTCGTGTCCTGTATGCT 60.224 50.000 0.00 0.00 0.00 3.79
441 442 2.128035 GCTATGTCGTGTCCTGTATGC 58.872 52.381 0.00 0.00 0.00 3.14
442 443 3.436700 TGCTATGTCGTGTCCTGTATG 57.563 47.619 0.00 0.00 0.00 2.39
443 444 4.465632 TTTGCTATGTCGTGTCCTGTAT 57.534 40.909 0.00 0.00 0.00 2.29
444 445 3.945981 TTTGCTATGTCGTGTCCTGTA 57.054 42.857 0.00 0.00 0.00 2.74
445 446 2.831685 TTTGCTATGTCGTGTCCTGT 57.168 45.000 0.00 0.00 0.00 4.00
446 447 3.684305 TGAATTTGCTATGTCGTGTCCTG 59.316 43.478 0.00 0.00 0.00 3.86
447 448 3.937814 TGAATTTGCTATGTCGTGTCCT 58.062 40.909 0.00 0.00 0.00 3.85
448 449 4.882671 ATGAATTTGCTATGTCGTGTCC 57.117 40.909 0.00 0.00 0.00 4.02
449 450 7.044706 GCTTTTATGAATTTGCTATGTCGTGTC 60.045 37.037 0.00 0.00 0.00 3.67
450 451 6.747280 GCTTTTATGAATTTGCTATGTCGTGT 59.253 34.615 0.00 0.00 0.00 4.49
451 452 6.968904 AGCTTTTATGAATTTGCTATGTCGTG 59.031 34.615 0.00 0.00 0.00 4.35
452 453 7.088589 AGCTTTTATGAATTTGCTATGTCGT 57.911 32.000 0.00 0.00 0.00 4.34
453 454 7.188834 TGAGCTTTTATGAATTTGCTATGTCG 58.811 34.615 0.00 0.00 0.00 4.35
454 455 9.178427 GATGAGCTTTTATGAATTTGCTATGTC 57.822 33.333 0.00 0.00 0.00 3.06
455 456 8.139989 GGATGAGCTTTTATGAATTTGCTATGT 58.860 33.333 0.00 0.00 0.00 2.29
456 457 8.358148 AGGATGAGCTTTTATGAATTTGCTATG 58.642 33.333 0.00 0.00 0.00 2.23
457 458 8.474710 AGGATGAGCTTTTATGAATTTGCTAT 57.525 30.769 0.00 0.00 0.00 2.97
458 459 7.886629 AGGATGAGCTTTTATGAATTTGCTA 57.113 32.000 0.00 0.00 0.00 3.49
459 460 6.786967 AGGATGAGCTTTTATGAATTTGCT 57.213 33.333 0.00 0.00 0.00 3.91
460 461 8.574737 AGATAGGATGAGCTTTTATGAATTTGC 58.425 33.333 0.00 0.00 0.00 3.68
465 466 9.561069 GGTAAAGATAGGATGAGCTTTTATGAA 57.439 33.333 0.00 0.00 33.16 2.57
466 467 8.938883 AGGTAAAGATAGGATGAGCTTTTATGA 58.061 33.333 0.00 0.00 33.16 2.15
467 468 9.566432 AAGGTAAAGATAGGATGAGCTTTTATG 57.434 33.333 0.00 0.00 33.16 1.90
471 472 9.785982 GATAAAGGTAAAGATAGGATGAGCTTT 57.214 33.333 0.00 0.00 38.02 3.51
472 473 9.165057 AGATAAAGGTAAAGATAGGATGAGCTT 57.835 33.333 0.00 0.00 0.00 3.74
473 474 8.734593 AGATAAAGGTAAAGATAGGATGAGCT 57.265 34.615 0.00 0.00 0.00 4.09
474 475 9.785982 AAAGATAAAGGTAAAGATAGGATGAGC 57.214 33.333 0.00 0.00 0.00 4.26
520 526 1.282930 GACGTCCGACCAGAAGCAAC 61.283 60.000 3.51 0.00 0.00 4.17
559 571 4.706476 TGAATAAGCAAAACCTCAGGGATG 59.294 41.667 0.00 0.00 36.25 3.51
560 572 4.934356 TGAATAAGCAAAACCTCAGGGAT 58.066 39.130 0.00 0.00 36.25 3.85
627 639 8.347771 CAAACTACAGGGTCCTTTTAGTAAAAC 58.652 37.037 3.88 0.00 0.00 2.43
634 646 6.707273 ATACCAAACTACAGGGTCCTTTTA 57.293 37.500 0.00 0.00 36.14 1.52
827 850 1.281867 TCTTTTCTGCCATGGATCCGT 59.718 47.619 18.40 3.27 0.00 4.69
867 890 2.291865 GCCCCTCTTTTCTCCCATCTTT 60.292 50.000 0.00 0.00 0.00 2.52
1121 1154 2.588877 CCACCGTCATCATCGCCC 60.589 66.667 0.00 0.00 0.00 6.13
1720 1864 4.530094 TTTACTCGCGCATTTAGGAATG 57.470 40.909 8.75 0.00 44.42 2.67
1735 1879 6.015603 AGCCGTAATCCCAGTAGTATTTACTC 60.016 42.308 0.00 0.00 37.73 2.59
1771 1917 3.630769 AGAATTGCTCGCATGTCATGAAT 59.369 39.130 17.24 4.13 0.00 2.57
1772 1918 3.011818 AGAATTGCTCGCATGTCATGAA 58.988 40.909 17.24 1.77 0.00 2.57
1808 1955 6.535508 AGTTTAGCTCCTGTTATTTAAGCTCG 59.464 38.462 0.00 0.00 42.10 5.03
1901 2048 0.681243 AATTTCCCGAGGGCAAGAGC 60.681 55.000 2.58 0.00 41.10 4.09
2206 2354 2.938354 CTGAACCACTCAGGCAAGG 58.062 57.895 0.00 0.00 46.89 3.61
2214 2362 0.836400 TCCTGACCCCTGAACCACTC 60.836 60.000 0.00 0.00 0.00 3.51
2341 2490 9.346005 TCACCACTCGTAATAATAGTGATCTTA 57.654 33.333 3.37 0.00 42.59 2.10
2342 2491 8.234136 TCACCACTCGTAATAATAGTGATCTT 57.766 34.615 3.37 0.00 42.59 2.40
2343 2492 7.818997 TCACCACTCGTAATAATAGTGATCT 57.181 36.000 3.37 0.00 42.59 2.75
2344 2493 8.867112 TTTCACCACTCGTAATAATAGTGATC 57.133 34.615 3.37 0.00 42.59 2.92
2345 2494 9.832445 AATTTCACCACTCGTAATAATAGTGAT 57.168 29.630 3.37 0.00 42.59 3.06
2346 2495 9.661563 AAATTTCACCACTCGTAATAATAGTGA 57.338 29.630 3.37 0.00 42.59 3.41
2351 2500 9.840427 CAAGAAAATTTCACCACTCGTAATAAT 57.160 29.630 8.55 0.00 0.00 1.28
2352 2501 8.842280 ACAAGAAAATTTCACCACTCGTAATAA 58.158 29.630 8.55 0.00 0.00 1.40
2353 2502 8.385898 ACAAGAAAATTTCACCACTCGTAATA 57.614 30.769 8.55 0.00 0.00 0.98
2354 2503 7.012894 TGACAAGAAAATTTCACCACTCGTAAT 59.987 33.333 8.55 0.00 0.00 1.89
2355 2504 6.316640 TGACAAGAAAATTTCACCACTCGTAA 59.683 34.615 8.55 0.00 0.00 3.18
2356 2505 5.818336 TGACAAGAAAATTTCACCACTCGTA 59.182 36.000 8.55 0.00 0.00 3.43
2357 2506 4.638421 TGACAAGAAAATTTCACCACTCGT 59.362 37.500 8.55 0.00 0.00 4.18
2358 2507 5.168526 TGACAAGAAAATTTCACCACTCG 57.831 39.130 8.55 0.00 0.00 4.18
2359 2508 7.202526 TCATTGACAAGAAAATTTCACCACTC 58.797 34.615 8.55 0.00 0.00 3.51
2360 2509 7.111247 TCATTGACAAGAAAATTTCACCACT 57.889 32.000 8.55 0.00 0.00 4.00
2361 2510 7.492344 AGTTCATTGACAAGAAAATTTCACCAC 59.508 33.333 8.55 0.00 0.00 4.16
2362 2511 7.555087 AGTTCATTGACAAGAAAATTTCACCA 58.445 30.769 8.55 0.00 0.00 4.17
2363 2512 8.424274 AAGTTCATTGACAAGAAAATTTCACC 57.576 30.769 8.55 0.00 0.00 4.02
2367 2516 9.030301 CCGTAAAGTTCATTGACAAGAAAATTT 57.970 29.630 12.45 12.45 0.00 1.82
2368 2517 7.169140 GCCGTAAAGTTCATTGACAAGAAAATT 59.831 33.333 0.00 0.00 0.00 1.82
2369 2518 6.640907 GCCGTAAAGTTCATTGACAAGAAAAT 59.359 34.615 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.