AutoCloner

Multiple sequence alignment - TraesCS3D01G156300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G156300	chr3D	100.000	4216	0	0	1	4216	123691319	123687104	0.000000e+00	7786
1	TraesCS3D01G156300	chr3D	90.294	2277	206	10	983	3249	123780203	123777932	0.000000e+00	2966
2	TraesCS3D01G156300	chr3D	96.384	885	11	6	1	876	586894846	586893974	0.000000e+00	1437
3	TraesCS3D01G156300	chr3A	96.853	2383	68	4	873	3249	131343104	131345485	0.000000e+00	3978
4	TraesCS3D01G156300	chr3A	89.342	2280	226	10	983	3249	131426041	131423766	0.000000e+00	2848
5	TraesCS3D01G156300	chr3A	91.228	513	31	7	3713	4216	131346603	131347110	0.000000e+00	686
6	TraesCS3D01G156300	chr3A	89.189	481	37	10	3248	3715	131345518	131345996	1.690000e-163	586
7	TraesCS3D01G156300	chr3A	79.789	475	54	15	3713	4172	131347665	131348112	1.470000e-79	307
8	TraesCS3D01G156300	chr3B	95.755	2332	90	4	927	3249	177089049	177086718	0.000000e+00	3749
9	TraesCS3D01G156300	chr3B	89.196	2277	219	10	983	3249	177918350	177916091	0.000000e+00	2817
10	TraesCS3D01G156300	chr3B	93.119	872	56	4	1	871	820053128	820052260	0.000000e+00	1275
11	TraesCS3D01G156300	chr3B	82.627	472	54	17	3715	4170	177080274	177079815	3.950000e-105	392
12	TraesCS3D01G156300	chr3B	90.640	203	17	2	3397	3597	177086361	177086159	6.950000e-68	268
13	TraesCS3D01G156300	chr3B	94.340	159	8	1	3248	3405	177086685	177086527	4.210000e-60	243
14	TraesCS3D01G156300	chr3B	95.775	71	3	0	3645	3715	177086153	177086083	9.580000e-22	115
15	TraesCS3D01G156300	chr2D	96.368	881	21	3	1	871	79535891	79535012	0.000000e+00	1439
16	TraesCS3D01G156300	chr2D	96.254	881	23	2	4	874	12804547	12803667	0.000000e+00	1435
17	TraesCS3D01G156300	chr2D	95.914	881	16	7	1	871	484075122	484075992	0.000000e+00	1410
18	TraesCS3D01G156300	chr5D	95.805	882	26	3	1	871	427150607	427149726	0.000000e+00	1413
19	TraesCS3D01G156300	chr6D	95.413	872	38	2	1	871	387057551	387056681	0.000000e+00	1387
20	TraesCS3D01G156300	chr7A	94.151	872	49	2	1	871	113258012	113257142	0.000000e+00	1327
21	TraesCS3D01G156300	chr7A	93.311	882	46	5	1	871	720911166	720910287	0.000000e+00	1290
22	TraesCS3D01G156300	chr7A	92.963	881	49	5	1	871	134726864	134727741	0.000000e+00	1271
23	TraesCS3D01G156300	chrUn	93.922	872	49	4	1	871	15953792	15954660	0.000000e+00	1314
24	TraesCS3D01G156300	chr7D	94.949	198	8	2	1	197	123312799	123312603	4.090000e-80	309

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G156300	chr3D	123687104	123691319	4215	True	7786.00	7786	100.00000	1	4216	1	chr3D.!!$R1	4215
1	TraesCS3D01G156300	chr3D	123777932	123780203	2271	True	2966.00	2966	90.29400	983	3249	1	chr3D.!!$R2	2266
2	TraesCS3D01G156300	chr3D	586893974	586894846	872	True	1437.00	1437	96.38400	1	876	1	chr3D.!!$R3	875
3	TraesCS3D01G156300	chr3A	131423766	131426041	2275	True	2848.00	2848	89.34200	983	3249	1	chr3A.!!$R1	2266
4	TraesCS3D01G156300	chr3A	131343104	131348112	5008	False	1389.25	3978	89.26475	873	4216	4	chr3A.!!$F1	3343
5	TraesCS3D01G156300	chr3B	177916091	177918350	2259	True	2817.00	2817	89.19600	983	3249	1	chr3B.!!$R2	2266
6	TraesCS3D01G156300	chr3B	820052260	820053128	868	True	1275.00	1275	93.11900	1	871	1	chr3B.!!$R3	870
7	TraesCS3D01G156300	chr3B	177086083	177089049	2966	True	1093.75	3749	94.12750	927	3715	4	chr3B.!!$R4	2788
8	TraesCS3D01G156300	chr2D	79535012	79535891	879	True	1439.00	1439	96.36800	1	871	1	chr2D.!!$R2	870
9	TraesCS3D01G156300	chr2D	12803667	12804547	880	True	1435.00	1435	96.25400	4	874	1	chr2D.!!$R1	870
10	TraesCS3D01G156300	chr2D	484075122	484075992	870	False	1410.00	1410	95.91400	1	871	1	chr2D.!!$F1	870
11	TraesCS3D01G156300	chr5D	427149726	427150607	881	True	1413.00	1413	95.80500	1	871	1	chr5D.!!$R1	870
12	TraesCS3D01G156300	chr6D	387056681	387057551	870	True	1387.00	1387	95.41300	1	871	1	chr6D.!!$R1	870
13	TraesCS3D01G156300	chr7A	113257142	113258012	870	True	1327.00	1327	94.15100	1	871	1	chr7A.!!$R1	870
14	TraesCS3D01G156300	chr7A	720910287	720911166	879	True	1290.00	1290	93.31100	1	871	1	chr7A.!!$R2	870
15	TraesCS3D01G156300	chr7A	134726864	134727741	877	False	1271.00	1271	92.96300	1	871	1	chr7A.!!$F1	870
16	TraesCS3D01G156300	chrUn	15953792	15954660	868	False	1314.00	1314	93.92200	1	871	1	chrUn.!!$F1	870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
655	687	2.301296	TCTGCTGCTCTGCTTTACTTCT	59.699	45.455	0.00	0.0	0.00	2.85	F
1767	1814	0.609957	TGCAGTTCAATCTGGGGCAG	60.610	55.000	0.00	0.0	36.12	4.85	F
2151	2198	0.389391	AATGCTACTGCGTCGCCTAT	59.611	50.000	15.88	2.3	43.34	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2151	2198	0.182299	TGCATCCATGGCCATACGAA	59.818	50.0	20.3	4.36	0.00	3.85	R
3189	3239	0.321564	CCTCGTCCTGAATGCACCAA	60.322	55.0	0.0	0.00	0.00	3.67	R
3484	3755	0.449388	GCACGGAAGAATCTGCAAGG	59.551	55.0	0.0	0.00	35.16	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
504	536	3.131400	GTGAGCTTCTCTAAATCCCGACT	59.869	47.826	0.00	0.00	0.00	4.18
655	687	2.301296	TCTGCTGCTCTGCTTTACTTCT	59.699	45.455	0.00	0.00	0.00	2.85
690	722	2.437359	GTGCTCGGCCTCTGCAAT	60.437	61.111	14.21	0.00	40.13	3.56
810	842	4.590918	TGGTTGTTTGTTGTAACTCCTGA	58.409	39.130	0.00	0.00	0.00	3.86
921	954	4.285863	TCCCACATTTTTCTTGGAACTGT	58.714	39.130	0.00	0.00	31.39	3.55
926	959	7.360361	CCACATTTTTCTTGGAACTGTAGTAC	58.640	38.462	0.00	0.00	31.39	2.73
927	960	7.012894	CCACATTTTTCTTGGAACTGTAGTACA	59.987	37.037	2.36	2.36	31.39	2.90
928	961	8.567948	CACATTTTTCTTGGAACTGTAGTACAT	58.432	33.333	2.82	0.00	0.00	2.29
929	962	9.131791	ACATTTTTCTTGGAACTGTAGTACATT	57.868	29.630	2.82	0.00	0.00	2.71
1100	1147	2.046892	CCTCCACTGTTCCCTGCG	60.047	66.667	0.00	0.00	0.00	5.18
1379	1426	3.699894	CAGCCTCTGGTGGTCGCT	61.700	66.667	0.00	0.00	36.33	4.93
1383	1430	2.574018	CCTCTGGTGGTCGCTGTCA	61.574	63.158	0.00	0.00	0.00	3.58
1538	1585	4.200283	GAGGCTCGGGCTCGACAG	62.200	72.222	3.45	0.00	44.75	3.51
1718	1765	3.004283	CTCGCTGCTGCTGAATCG	58.996	61.111	14.03	4.85	36.97	3.34
1737	1784	3.505184	CCGGAAACCGCGAATGGG	61.505	66.667	8.23	0.00	46.86	4.00
1767	1814	0.609957	TGCAGTTCAATCTGGGGCAG	60.610	55.000	0.00	0.00	36.12	4.85
1864	1911	0.962855	TTCCGATTGCAAATCCGGCA	60.963	50.000	24.44	16.19	41.55	5.69
2151	2198	0.389391	AATGCTACTGCGTCGCCTAT	59.611	50.000	15.88	2.30	43.34	2.57
2202	2252	3.391296	ACCACAACCTGTACAATCTGAGT	59.609	43.478	0.00	0.00	0.00	3.41
2344	2394	5.661458	CTTCTTTGGTACTGATATCGGTGT	58.339	41.667	24.70	12.87	36.70	4.16
2354	2404	4.100963	ACTGATATCGGTGTTGCTATGGAA	59.899	41.667	16.56	0.00	33.47	3.53
2505	2555	1.691434	GTTTTCAGGGGAACAATGCCA	59.309	47.619	0.00	0.00	39.19	4.92
2538	2588	2.662006	TCGCTGTGAAGGATCTCAAG	57.338	50.000	0.00	0.00	0.00	3.02
2666	2716	4.511527	AGAAGATTGCTGGTGTATGAGTG	58.488	43.478	0.00	0.00	0.00	3.51
2738	2788	2.616376	TGTTGAGTTGGAATGTTCGGTG	59.384	45.455	0.00	0.00	0.00	4.94
2961	3011	2.430921	GCGCCGGAGTGGATATCG	60.431	66.667	5.05	0.00	42.00	2.92
3198	3248	2.268076	GGTCGCCTGTTGGTGCATT	61.268	57.895	0.00	0.00	43.26	3.56
3266	3350	3.476552	TGTTCCAGCTTCGTTTCAGAAT	58.523	40.909	0.00	0.00	0.00	2.40
3282	3366	5.557576	TCAGAATCTTATGGAGGGTGATG	57.442	43.478	0.00	0.00	0.00	3.07
3318	3402	6.749923	ATTCTGATTTCTGAAGTAGGTTGC	57.250	37.500	6.15	0.00	37.26	4.17
3320	3404	6.605471	TCTGATTTCTGAAGTAGGTTGCTA	57.395	37.500	0.00	0.00	0.00	3.49
3364	3453	5.303333	TGAGTTGTGGTCAGTATCTGTGTTA	59.697	40.000	0.00	0.00	32.61	2.41
3382	3472	7.502226	TCTGTGTTATGATTTGTTTCCAGTTCT	59.498	33.333	0.00	0.00	0.00	3.01
3457	3724	2.354821	GCGGATTGTTGTAGGGATTCAC	59.645	50.000	0.00	0.00	0.00	3.18
3458	3725	3.605634	CGGATTGTTGTAGGGATTCACA	58.394	45.455	0.00	0.00	0.00	3.58
3499	3770	3.416156	ACACTTCCTTGCAGATTCTTCC	58.584	45.455	0.00	0.00	0.00	3.46
3500	3771	2.417933	CACTTCCTTGCAGATTCTTCCG	59.582	50.000	0.00	0.00	0.00	4.30
3557	3828	1.537202	CAGTTACACCTTTCAGCAGGC	59.463	52.381	0.00	0.00	37.47	4.85
3581	3852	2.364324	TGAATCTATACAGGGGTGTCGC	59.636	50.000	0.00	0.00	0.00	5.19
3582	3853	1.339097	ATCTATACAGGGGTGTCGCC	58.661	55.000	0.00	0.00	36.67	5.54
3600	3871	2.288458	CGCCGTGAAGAAGTTGGTAAAA	59.712	45.455	0.00	0.00	0.00	1.52
3608	3879	3.487372	AGAAGTTGGTAAAAGGAGGCAC	58.513	45.455	0.00	0.00	0.00	5.01
3711	3982	6.381420	ACCTACTACAGATATGGTATGGATGC	59.619	42.308	0.00	0.00	0.00	3.91
3715	3986	4.330250	ACAGATATGGTATGGATGCTTGC	58.670	43.478	0.00	0.00	0.00	4.01
3717	3988	4.395231	CAGATATGGTATGGATGCTTGCAG	59.605	45.833	0.87	0.00	0.00	4.41
3787	4667	2.505819	ACTTTGTCACTGGTCTTGTCCT	59.494	45.455	0.00	0.00	0.00	3.85
3807	4687	6.660521	TGTCCTTGCATGAAAGAAGATTGTAT	59.339	34.615	15.61	0.00	0.00	2.29
3824	4704	4.698201	TGTATTTTGACCAGGACAGTGA	57.302	40.909	0.00	0.00	0.00	3.41
3838	4718	1.276138	ACAGTGATGCGATCTGGTGAA	59.724	47.619	0.00	0.00	34.02	3.18
3845	4725	5.928839	GTGATGCGATCTGGTGAATAATACT	59.071	40.000	0.00	0.00	0.00	2.12
3866	4746	3.567478	ATGTTTATGCCCTGAGGAGAC	57.433	47.619	0.00	0.00	33.47	3.36
3872	4752	2.205022	TGCCCTGAGGAGACAATTTG	57.795	50.000	0.00	0.00	33.47	2.32
3875	4755	3.010420	GCCCTGAGGAGACAATTTGTAC	58.990	50.000	0.00	0.23	33.47	2.90
3891	4771	2.729194	TGTACTTCTCTCTGAGGCTCC	58.271	52.381	12.86	0.00	0.00	4.70
3898	4778	0.038310	TCTCTGAGGCTCCGACTTCA	59.962	55.000	12.86	0.00	0.00	3.02
3913	4793	4.503123	CCGACTTCATGCCCATCAACTATA	60.503	45.833	0.00	0.00	0.00	1.31
3914	4794	5.240891	CGACTTCATGCCCATCAACTATAT	58.759	41.667	0.00	0.00	0.00	0.86
3915	4795	6.398095	CGACTTCATGCCCATCAACTATATA	58.602	40.000	0.00	0.00	0.00	0.86
3916	4796	6.311445	CGACTTCATGCCCATCAACTATATAC	59.689	42.308	0.00	0.00	0.00	1.47
3957	4838	8.596271	AGAAACAAAAGAACGGAAAAAGAAAA	57.404	26.923	0.00	0.00	0.00	2.29
3959	4840	9.313323	GAAACAAAAGAACGGAAAAAGAAAAAG	57.687	29.630	0.00	0.00	0.00	2.27
3963	4844	8.664798	CAAAAGAACGGAAAAAGAAAAAGGAAT	58.335	29.630	0.00	0.00	0.00	3.01
4006	4895	1.489481	TGTATGGAGCAGACTGGAGG	58.511	55.000	4.26	0.00	0.00	4.30
4049	4938	4.724399	TGAAAGCCTTGTTGAGTGGAATA	58.276	39.130	0.00	0.00	0.00	1.75
4061	4950	6.481644	TGTTGAGTGGAATATTTGGCAAAAAC	59.518	34.615	17.70	12.38	0.00	2.43
4076	4965	4.318475	GGCAAAAACCATTAGCGAAAACAC	60.318	41.667	0.00	0.00	0.00	3.32
4086	4975	3.328237	AGCGAAAACACTTTGTTACCG	57.672	42.857	0.00	7.98	40.14	4.02
4110	4999	6.345723	CGTTTGTCAAAATATGTTGCTTGACC	60.346	38.462	13.84	2.74	44.52	4.02
4111	5000	5.781210	TGTCAAAATATGTTGCTTGACCA	57.219	34.783	13.84	3.93	44.52	4.02
4176	5065	4.225042	ACCAACATGTTGCTCTCCTGTATA	59.775	41.667	29.42	0.00	39.16	1.47

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	3.030291	CAGAGAGGAATCACTAGCCACT	58.970	50.000	0.00	0.00	0.00	4.00
79	81	2.436646	CCTAGCTGGCCACCAACG	60.437	66.667	0.00	0.00	30.80	4.10
655	687	4.290093	AGCACTCCACACTAGGATCATAA	58.710	43.478	0.00	0.00	36.99	1.90
810	842	2.279935	TAACAAAGCCATCAACCGGT	57.720	45.000	0.00	0.00	0.00	5.28
981	1019	3.308323	GCATAACTTTCAGAGGAGCGAAG	59.692	47.826	0.00	0.00	0.00	3.79
1538	1585	2.047560	CGTTCTTCCCGGTGTCCC	60.048	66.667	0.00	0.00	0.00	4.46
1737	1784	1.865865	TGAACTGCAAGAACTCGGTC	58.134	50.000	0.00	0.00	37.43	4.79
1767	1814	0.835941	ACCACCTCATCAGGCTGATC	59.164	55.000	26.62	0.00	45.05	2.92
1864	1911	2.048127	GTCGCCGCAGAAGAACCT	60.048	61.111	0.00	0.00	0.00	3.50
2151	2198	0.182299	TGCATCCATGGCCATACGAA	59.818	50.000	20.30	4.36	0.00	3.85
2344	2394	3.527253	TCCCTCCTGAATTTCCATAGCAA	59.473	43.478	0.00	0.00	0.00	3.91
2354	2404	3.708121	GCCAAATGAATCCCTCCTGAATT	59.292	43.478	0.00	0.00	0.00	2.17
2505	2555	0.463295	CAGCGATGGCAGTTGATCCT	60.463	55.000	1.50	0.00	43.41	3.24
2538	2588	3.672295	CTCTGCTTGCCCGAGGACC	62.672	68.421	0.00	0.00	0.00	4.46
2769	2819	6.239543	CCTCACATTCTTCATGTAGATAGGCT	60.240	42.308	2.58	0.00	45.06	4.58
2880	2930	2.191128	ATTCTCGTCCAAGCAGCTTT	57.809	45.000	4.38	0.00	0.00	3.51
2961	3011	1.227674	CTTAGTGATCGGCAGCCCC	60.228	63.158	5.63	0.00	0.00	5.80
3189	3239	0.321564	CCTCGTCCTGAATGCACCAA	60.322	55.000	0.00	0.00	0.00	3.67
3198	3248	2.095461	CTGTCATTCTCCTCGTCCTGA	58.905	52.381	0.00	0.00	0.00	3.86
3266	3350	3.452264	CACTGTCATCACCCTCCATAAGA	59.548	47.826	0.00	0.00	0.00	2.10
3313	3397	5.246307	ACAAGTGACTAATTCCTAGCAACC	58.754	41.667	0.00	0.00	0.00	3.77
3316	3400	4.695455	GCAACAAGTGACTAATTCCTAGCA	59.305	41.667	0.00	0.00	0.00	3.49
3318	3402	6.166279	TCAGCAACAAGTGACTAATTCCTAG	58.834	40.000	0.00	0.00	0.00	3.02
3320	3404	4.973168	TCAGCAACAAGTGACTAATTCCT	58.027	39.130	0.00	0.00	0.00	3.36
3390	3480	7.808856	ACAAAACGAGTTATTCAGTAGAGAGTC	59.191	37.037	0.00	0.00	0.00	3.36
3457	3724	8.159344	AGTGTATCTTCTTTTTCCAACTTCTG	57.841	34.615	0.00	0.00	0.00	3.02
3458	3725	8.753497	AAGTGTATCTTCTTTTTCCAACTTCT	57.247	30.769	0.00	0.00	0.00	2.85
3484	3755	0.449388	GCACGGAAGAATCTGCAAGG	59.551	55.000	0.00	0.00	35.16	3.61
3499	3770	2.983136	GTCGATAGGAGATGAATGCACG	59.017	50.000	0.00	0.00	0.00	5.34
3500	3771	4.250116	AGTCGATAGGAGATGAATGCAC	57.750	45.455	0.00	0.00	0.00	4.57
3557	3828	2.698797	ACACCCCTGTATAGATTCACCG	59.301	50.000	0.00	0.00	0.00	4.94
3581	3852	4.131596	TCCTTTTACCAACTTCTTCACGG	58.868	43.478	0.00	0.00	0.00	4.94
3582	3853	4.213482	CCTCCTTTTACCAACTTCTTCACG	59.787	45.833	0.00	0.00	0.00	4.35
3620	3891	1.264672	AAAGACGCGTGTTGCAAAAC	58.735	45.000	23.14	9.90	46.97	2.43
3632	3903	2.669364	TCCGACTTACTGAAAAGACGC	58.331	47.619	11.29	0.00	41.26	5.19
3715	3986	3.259064	CATGAAAAAGCAAGCATCCCTG	58.741	45.455	0.00	0.00	0.00	4.45
3717	3988	2.004733	GCATGAAAAAGCAAGCATCCC	58.995	47.619	0.00	0.00	33.08	3.85
3761	4641	5.360591	ACAAGACCAGTGACAAAGTTAGAG	58.639	41.667	0.00	0.00	0.00	2.43
3763	4643	4.511826	GGACAAGACCAGTGACAAAGTTAG	59.488	45.833	0.00	0.00	0.00	2.34
3787	4667	9.195411	GTCAAAATACAATCTTCTTTCATGCAA	57.805	29.630	0.00	0.00	0.00	4.08
3807	4687	2.229792	GCATCACTGTCCTGGTCAAAA	58.770	47.619	0.00	0.00	0.00	2.44
3824	4704	7.615403	ACATAGTATTATTCACCAGATCGCAT	58.385	34.615	0.00	0.00	0.00	4.73
3838	4718	8.449423	TCCTCAGGGCATAAACATAGTATTAT	57.551	34.615	0.00	0.00	0.00	1.28
3845	4725	4.037222	TGTCTCCTCAGGGCATAAACATA	58.963	43.478	0.00	0.00	0.00	2.29
3866	4746	5.486526	AGCCTCAGAGAGAAGTACAAATTG	58.513	41.667	0.00	0.00	0.00	2.32
3872	4752	1.673920	CGGAGCCTCAGAGAGAAGTAC	59.326	57.143	0.00	0.00	0.00	2.73
3875	4755	0.738389	GTCGGAGCCTCAGAGAGAAG	59.262	60.000	0.00	0.00	0.00	2.85
3891	4771	1.742761	AGTTGATGGGCATGAAGTCG	58.257	50.000	0.00	0.00	0.00	4.18
3937	4817	7.589574	TCCTTTTTCTTTTTCCGTTCTTTTG	57.410	32.000	0.00	0.00	0.00	2.44
3957	4838	4.103311	GCTCCTGTGGGTCTATTATTCCTT	59.897	45.833	0.00	0.00	0.00	3.36
3959	4840	3.391296	TGCTCCTGTGGGTCTATTATTCC	59.609	47.826	0.00	0.00	0.00	3.01
3963	4844	3.031736	GTCTGCTCCTGTGGGTCTATTA	58.968	50.000	0.00	0.00	0.00	0.98
3974	4863	2.251409	CCATACATGGTCTGCTCCTG	57.749	55.000	0.00	0.00	43.05	3.86
4004	4893	1.708993	TTGTGCCTTGCTCCAGACCT	61.709	55.000	0.00	0.00	0.00	3.85
4006	4895	1.200948	GATTTGTGCCTTGCTCCAGAC	59.799	52.381	0.00	0.00	0.00	3.51
4049	4938	4.264460	TCGCTAATGGTTTTTGCCAAAT	57.736	36.364	0.00	0.00	42.48	2.32
4061	4950	5.627780	GGTAACAAAGTGTTTTCGCTAATGG	59.372	40.000	0.00	0.00	41.45	3.16
4076	4965	8.568732	ACATATTTTGACAAACGGTAACAAAG	57.431	30.769	0.00	0.00	33.23	2.77
4086	4975	6.478344	TGGTCAAGCAACATATTTTGACAAAC	59.522	34.615	15.46	0.00	46.90	2.93

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.