Multiple sequence alignment - TraesCS3D01G155800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G155800 chr3D 100.000 5284 0 0 1 5284 123318913 123313630 0.000000e+00 9758
1 TraesCS3D01G155800 chr3D 80.444 225 35 7 1 218 283306745 283306967 4.230000e-36 163
2 TraesCS3D01G155800 chr3B 96.411 1978 52 5 2468 4428 175779103 175777128 0.000000e+00 3241
3 TraesCS3D01G155800 chr3B 95.842 914 35 3 1555 2466 175780045 175779133 0.000000e+00 1474
4 TraesCS3D01G155800 chr3B 90.110 1001 62 14 543 1515 175781038 175780047 0.000000e+00 1266
5 TraesCS3D01G155800 chr3B 90.126 476 26 7 4425 4882 175777093 175776621 2.720000e-167 599
6 TraesCS3D01G155800 chr3B 90.210 429 21 8 4870 5284 175776605 175776184 1.670000e-149 540
7 TraesCS3D01G155800 chr3B 78.049 205 36 6 1 198 818160495 818160293 2.580000e-23 121
8 TraesCS3D01G155800 chr3A 96.212 1980 54 5 2468 4428 130853535 130851558 0.000000e+00 3221
9 TraesCS3D01G155800 chr3A 91.378 1937 95 18 546 2466 130855445 130853565 0.000000e+00 2586
10 TraesCS3D01G155800 chr3A 91.350 474 25 5 4425 4882 130851523 130851050 7.470000e-178 634
11 TraesCS3D01G155800 chr3A 94.372 231 13 0 5054 5284 130849676 130849446 6.510000e-94 355
12 TraesCS3D01G155800 chr3A 96.970 165 4 1 4870 5034 130851035 130850872 5.210000e-70 276
13 TraesCS3D01G155800 chr5A 86.940 268 29 4 3271 3535 523765813 523765549 4.000000e-76 296
14 TraesCS3D01G155800 chr5A 78.049 246 45 6 1 238 663732927 663732683 4.260000e-31 147
15 TraesCS3D01G155800 chr1B 86.282 277 32 4 3265 3538 601141813 601141540 4.000000e-76 296
16 TraesCS3D01G155800 chr2B 86.282 277 31 5 3266 3538 564439237 564438964 1.440000e-75 294
17 TraesCS3D01G155800 chr2B 79.675 246 38 8 1 238 637873165 637872924 3.270000e-37 167
18 TraesCS3D01G155800 chr2A 86.397 272 31 4 3265 3533 117297765 117297497 5.180000e-75 292
19 TraesCS3D01G155800 chr7B 85.512 283 34 6 3260 3538 569563302 569563023 6.700000e-74 289
20 TraesCS3D01G155800 chr7B 81.395 215 34 2 1 209 533762754 533762968 2.530000e-38 171
21 TraesCS3D01G155800 chr7A 86.194 268 31 4 3271 3535 374538411 374538147 8.660000e-73 285
22 TraesCS3D01G155800 chr7A 79.500 200 32 6 1 194 330750886 330751082 3.320000e-27 134
23 TraesCS3D01G155800 chr7A 78.922 204 34 4 1 198 330796260 330796460 4.290000e-26 130
24 TraesCS3D01G155800 chr6D 85.053 281 36 4 3261 3538 176483167 176483444 1.120000e-71 281
25 TraesCS3D01G155800 chr1D 79.310 232 37 7 12 236 352942177 352941950 9.170000e-33 152
26 TraesCS3D01G155800 chr4D 78.995 219 40 2 1 213 509425250 509425468 1.530000e-30 145
27 TraesCS3D01G155800 chr2D 79.470 151 29 2 4 153 427440186 427440037 7.240000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G155800 chr3D 123313630 123318913 5283 True 9758.0 9758 100.0000 1 5284 1 chr3D.!!$R1 5283
1 TraesCS3D01G155800 chr3B 175776184 175781038 4854 True 1424.0 3241 92.5398 543 5284 5 chr3B.!!$R2 4741
2 TraesCS3D01G155800 chr3A 130849446 130855445 5999 True 1414.4 3221 94.0564 546 5284 5 chr3A.!!$R1 4738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 509 0.034477 CATGGTTTAGGTTCCGGGCT 60.034 55.0 0.00 0.00 0.0 5.19 F
932 956 0.040499 ACACACTCCTCTCCCTCTCC 59.960 60.0 0.00 0.00 0.0 3.71 F
933 957 0.334676 CACACTCCTCTCCCTCTCCT 59.665 60.0 0.00 0.00 0.0 3.69 F
934 958 0.629058 ACACTCCTCTCCCTCTCCTC 59.371 60.0 0.00 0.00 0.0 3.71 F
1284 1311 1.035932 GGGATGACGACGAGGAGGAA 61.036 60.0 0.00 0.00 0.0 3.36 F
1587 1614 1.549203 AATGGATTGGTCTGTGGCAC 58.451 50.0 11.55 11.55 0.0 5.01 F
3263 3330 0.784778 GCCTTCGAACGTTCACTGAG 59.215 55.0 26.71 16.80 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1597 0.537143 GTGTGCCACAGACCAATCCA 60.537 55.000 0.00 0.00 34.08 3.41 R
2300 2330 1.270550 CCATGCACCACTGGTTCTTTC 59.729 52.381 0.00 0.00 31.02 2.62 R
2380 2410 2.493675 CCATAGATCGATGATGACCGGT 59.506 50.000 6.92 6.92 0.00 5.28 R
2495 2553 4.271291 GGAGAACTGACTGTCTTTGTGTTC 59.729 45.833 9.51 13.57 34.39 3.18 R
3233 3293 2.159827 CGTTCGAAGGCAGCTTAAAGAC 60.160 50.000 4.73 0.00 0.00 3.01 R
3492 3569 0.325933 TAGCAATGCCACACTCTGCT 59.674 50.000 0.00 0.11 45.05 4.24 R
4900 5062 0.673333 CATGGTGTCACCGCTTAGCA 60.673 55.000 17.27 0.00 42.58 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.877378 CAAATCCATCCCCAACCATATG 57.123 45.455 0.00 0.00 0.00 1.78
22 23 3.548162 AATCCATCCCCAACCATATGG 57.452 47.619 20.68 20.68 40.25 2.74
23 24 0.482446 TCCATCCCCAACCATATGGC 59.518 55.000 22.18 0.00 39.01 4.40
24 25 0.542702 CCATCCCCAACCATATGGCC 60.543 60.000 22.18 0.00 39.26 5.36
25 26 0.895100 CATCCCCAACCATATGGCCG 60.895 60.000 22.18 12.52 39.26 6.13
26 27 1.065410 ATCCCCAACCATATGGCCGA 61.065 55.000 22.18 10.05 39.26 5.54
27 28 1.065410 TCCCCAACCATATGGCCGAT 61.065 55.000 22.18 2.88 39.26 4.18
28 29 0.609131 CCCCAACCATATGGCCGATC 60.609 60.000 22.18 0.00 39.26 3.69
29 30 0.955428 CCCAACCATATGGCCGATCG 60.955 60.000 22.18 8.51 39.26 3.69
30 31 1.577328 CCAACCATATGGCCGATCGC 61.577 60.000 22.18 5.23 39.32 4.58
31 32 0.603707 CAACCATATGGCCGATCGCT 60.604 55.000 22.18 0.00 39.32 4.93
32 33 0.108585 AACCATATGGCCGATCGCTT 59.891 50.000 22.18 2.86 39.32 4.68
33 34 0.320771 ACCATATGGCCGATCGCTTC 60.321 55.000 22.18 1.52 39.32 3.86
34 35 0.320683 CCATATGGCCGATCGCTTCA 60.321 55.000 9.29 7.63 37.74 3.02
35 36 1.676916 CCATATGGCCGATCGCTTCAT 60.677 52.381 9.29 14.18 37.74 2.57
36 37 1.662629 CATATGGCCGATCGCTTCATC 59.337 52.381 10.32 0.00 37.74 2.92
37 38 0.388520 TATGGCCGATCGCTTCATCG 60.389 55.000 10.32 0.00 44.45 3.84
41 42 2.728180 CGATCGCTTCATCGGGGA 59.272 61.111 0.26 0.00 41.71 4.81
42 43 1.067416 CGATCGCTTCATCGGGGAA 59.933 57.895 0.26 0.00 41.71 3.97
43 44 0.529773 CGATCGCTTCATCGGGGAAA 60.530 55.000 0.26 0.00 41.71 3.13
44 45 1.221414 GATCGCTTCATCGGGGAAAG 58.779 55.000 0.00 0.00 0.00 2.62
45 46 0.830648 ATCGCTTCATCGGGGAAAGA 59.169 50.000 0.00 0.00 0.00 2.52
46 47 0.830648 TCGCTTCATCGGGGAAAGAT 59.169 50.000 0.00 0.00 0.00 2.40
47 48 2.036387 TCGCTTCATCGGGGAAAGATA 58.964 47.619 0.00 0.00 0.00 1.98
48 49 2.632996 TCGCTTCATCGGGGAAAGATAT 59.367 45.455 0.00 0.00 0.00 1.63
49 50 2.738846 CGCTTCATCGGGGAAAGATATG 59.261 50.000 0.00 0.00 0.00 1.78
50 51 3.554960 CGCTTCATCGGGGAAAGATATGA 60.555 47.826 0.00 0.00 0.00 2.15
51 52 4.389374 GCTTCATCGGGGAAAGATATGAA 58.611 43.478 0.00 0.00 35.76 2.57
53 54 5.887214 TTCATCGGGGAAAGATATGAAGA 57.113 39.130 0.00 0.00 32.99 2.87
54 55 5.887214 TCATCGGGGAAAGATATGAAGAA 57.113 39.130 0.00 0.00 0.00 2.52
55 56 6.439636 TCATCGGGGAAAGATATGAAGAAT 57.560 37.500 0.00 0.00 0.00 2.40
56 57 6.467677 TCATCGGGGAAAGATATGAAGAATC 58.532 40.000 0.00 0.00 0.00 2.52
57 58 6.270927 TCATCGGGGAAAGATATGAAGAATCT 59.729 38.462 0.00 0.00 35.17 2.40
58 59 6.500589 TCGGGGAAAGATATGAAGAATCTT 57.499 37.500 0.00 0.00 43.80 2.40
68 69 8.027440 AGATATGAAGAATCTTTATTCAGCGC 57.973 34.615 5.58 0.00 43.44 5.92
69 70 4.882671 TGAAGAATCTTTATTCAGCGCC 57.117 40.909 2.29 0.00 43.44 6.53
70 71 4.260985 TGAAGAATCTTTATTCAGCGCCA 58.739 39.130 2.29 0.00 43.44 5.69
71 72 4.094887 TGAAGAATCTTTATTCAGCGCCAC 59.905 41.667 2.29 0.00 43.44 5.01
72 73 2.945668 AGAATCTTTATTCAGCGCCACC 59.054 45.455 2.29 0.00 43.44 4.61
73 74 2.418368 ATCTTTATTCAGCGCCACCA 57.582 45.000 2.29 0.00 0.00 4.17
74 75 1.448985 TCTTTATTCAGCGCCACCAC 58.551 50.000 2.29 0.00 0.00 4.16
75 76 0.451783 CTTTATTCAGCGCCACCACC 59.548 55.000 2.29 0.00 0.00 4.61
76 77 0.250945 TTTATTCAGCGCCACCACCA 60.251 50.000 2.29 0.00 0.00 4.17
77 78 0.958382 TTATTCAGCGCCACCACCAC 60.958 55.000 2.29 0.00 0.00 4.16
78 79 2.813226 TATTCAGCGCCACCACCACC 62.813 60.000 2.29 0.00 0.00 4.61
97 98 4.735132 CCGCCGAAGCCAAGACGA 62.735 66.667 0.00 0.00 34.57 4.20
98 99 2.509336 CGCCGAAGCCAAGACGAT 60.509 61.111 0.00 0.00 34.57 3.73
99 100 2.802667 CGCCGAAGCCAAGACGATG 61.803 63.158 0.00 0.00 34.57 3.84
100 101 1.447838 GCCGAAGCCAAGACGATGA 60.448 57.895 0.00 0.00 0.00 2.92
101 102 1.019278 GCCGAAGCCAAGACGATGAA 61.019 55.000 0.00 0.00 0.00 2.57
102 103 0.721718 CCGAAGCCAAGACGATGAAC 59.278 55.000 0.00 0.00 0.00 3.18
103 104 1.428448 CGAAGCCAAGACGATGAACA 58.572 50.000 0.00 0.00 0.00 3.18
104 105 1.798223 CGAAGCCAAGACGATGAACAA 59.202 47.619 0.00 0.00 0.00 2.83
105 106 2.416547 CGAAGCCAAGACGATGAACAAT 59.583 45.455 0.00 0.00 0.00 2.71
106 107 3.484229 CGAAGCCAAGACGATGAACAATC 60.484 47.826 0.00 0.00 0.00 2.67
107 108 3.340814 AGCCAAGACGATGAACAATCT 57.659 42.857 0.00 0.00 32.61 2.40
108 109 4.471904 AGCCAAGACGATGAACAATCTA 57.528 40.909 0.00 0.00 32.61 1.98
109 110 4.832248 AGCCAAGACGATGAACAATCTAA 58.168 39.130 0.00 0.00 32.61 2.10
110 111 4.872691 AGCCAAGACGATGAACAATCTAAG 59.127 41.667 0.00 0.00 32.61 2.18
111 112 4.870426 GCCAAGACGATGAACAATCTAAGA 59.130 41.667 0.00 0.00 32.61 2.10
112 113 5.351465 GCCAAGACGATGAACAATCTAAGAA 59.649 40.000 0.00 0.00 32.61 2.52
113 114 6.037610 GCCAAGACGATGAACAATCTAAGAAT 59.962 38.462 0.00 0.00 32.61 2.40
114 115 7.625553 CCAAGACGATGAACAATCTAAGAATC 58.374 38.462 0.00 0.00 32.61 2.52
115 116 7.493971 CCAAGACGATGAACAATCTAAGAATCT 59.506 37.037 0.00 0.00 32.61 2.40
116 117 9.521503 CAAGACGATGAACAATCTAAGAATCTA 57.478 33.333 0.00 0.00 32.61 1.98
117 118 9.743057 AAGACGATGAACAATCTAAGAATCTAG 57.257 33.333 0.00 0.00 32.61 2.43
118 119 9.126151 AGACGATGAACAATCTAAGAATCTAGA 57.874 33.333 0.00 0.00 32.61 2.43
119 120 9.176181 GACGATGAACAATCTAAGAATCTAGAC 57.824 37.037 0.00 0.00 30.76 2.59
120 121 8.908903 ACGATGAACAATCTAAGAATCTAGACT 58.091 33.333 0.00 0.00 30.76 3.24
128 129 9.255304 CAATCTAAGAATCTAGACTACAAAGGC 57.745 37.037 0.00 0.00 30.76 4.35
129 130 7.349412 TCTAAGAATCTAGACTACAAAGGCC 57.651 40.000 0.00 0.00 0.00 5.19
130 131 7.126733 TCTAAGAATCTAGACTACAAAGGCCT 58.873 38.462 0.00 0.00 0.00 5.19
131 132 8.280084 TCTAAGAATCTAGACTACAAAGGCCTA 58.720 37.037 5.16 0.00 0.00 3.93
132 133 7.735326 AAGAATCTAGACTACAAAGGCCTAA 57.265 36.000 5.16 0.00 0.00 2.69
133 134 7.735326 AGAATCTAGACTACAAAGGCCTAAA 57.265 36.000 5.16 0.00 0.00 1.85
134 135 8.147244 AGAATCTAGACTACAAAGGCCTAAAA 57.853 34.615 5.16 0.00 0.00 1.52
135 136 8.603304 AGAATCTAGACTACAAAGGCCTAAAAA 58.397 33.333 5.16 0.00 0.00 1.94
136 137 8.563123 AATCTAGACTACAAAGGCCTAAAAAC 57.437 34.615 5.16 0.00 0.00 2.43
137 138 6.161381 TCTAGACTACAAAGGCCTAAAAACG 58.839 40.000 5.16 0.00 0.00 3.60
138 139 4.964593 AGACTACAAAGGCCTAAAAACGA 58.035 39.130 5.16 0.00 0.00 3.85
139 140 5.557866 AGACTACAAAGGCCTAAAAACGAT 58.442 37.500 5.16 0.00 0.00 3.73
140 141 5.642491 AGACTACAAAGGCCTAAAAACGATC 59.358 40.000 5.16 0.00 0.00 3.69
141 142 5.310451 ACTACAAAGGCCTAAAAACGATCA 58.690 37.500 5.16 0.00 0.00 2.92
142 143 4.499037 ACAAAGGCCTAAAAACGATCAC 57.501 40.909 5.16 0.00 0.00 3.06
143 144 3.886505 ACAAAGGCCTAAAAACGATCACA 59.113 39.130 5.16 0.00 0.00 3.58
144 145 4.522789 ACAAAGGCCTAAAAACGATCACAT 59.477 37.500 5.16 0.00 0.00 3.21
145 146 4.701956 AAGGCCTAAAAACGATCACATG 57.298 40.909 5.16 0.00 0.00 3.21
146 147 2.423538 AGGCCTAAAAACGATCACATGC 59.576 45.455 1.29 0.00 0.00 4.06
147 148 2.440501 GCCTAAAAACGATCACATGCG 58.559 47.619 0.00 0.00 0.00 4.73
148 149 2.159572 GCCTAAAAACGATCACATGCGT 60.160 45.455 0.00 0.00 43.39 5.24
154 155 2.008752 ACGATCACATGCGTTGATGA 57.991 45.000 2.25 0.00 37.48 2.92
155 156 1.660607 ACGATCACATGCGTTGATGAC 59.339 47.619 2.25 0.00 37.48 3.06
156 157 1.004610 CGATCACATGCGTTGATGACC 60.005 52.381 2.25 0.00 0.00 4.02
157 158 2.283298 GATCACATGCGTTGATGACCT 58.717 47.619 2.25 0.00 0.00 3.85
158 159 1.725641 TCACATGCGTTGATGACCTC 58.274 50.000 0.00 0.00 0.00 3.85
159 160 0.729116 CACATGCGTTGATGACCTCC 59.271 55.000 0.00 0.00 0.00 4.30
160 161 0.392998 ACATGCGTTGATGACCTCCC 60.393 55.000 0.00 0.00 0.00 4.30
161 162 0.107508 CATGCGTTGATGACCTCCCT 60.108 55.000 0.00 0.00 0.00 4.20
162 163 0.179000 ATGCGTTGATGACCTCCCTC 59.821 55.000 0.00 0.00 0.00 4.30
163 164 1.191489 TGCGTTGATGACCTCCCTCA 61.191 55.000 0.00 0.00 0.00 3.86
164 165 0.741221 GCGTTGATGACCTCCCTCAC 60.741 60.000 0.00 0.00 0.00 3.51
165 166 0.108138 CGTTGATGACCTCCCTCACC 60.108 60.000 0.00 0.00 0.00 4.02
166 167 0.984230 GTTGATGACCTCCCTCACCA 59.016 55.000 0.00 0.00 0.00 4.17
167 168 0.984230 TTGATGACCTCCCTCACCAC 59.016 55.000 0.00 0.00 0.00 4.16
168 169 0.909610 TGATGACCTCCCTCACCACC 60.910 60.000 0.00 0.00 0.00 4.61
169 170 0.909610 GATGACCTCCCTCACCACCA 60.910 60.000 0.00 0.00 0.00 4.17
170 171 0.475632 ATGACCTCCCTCACCACCAA 60.476 55.000 0.00 0.00 0.00 3.67
171 172 1.375326 GACCTCCCTCACCACCAAC 59.625 63.158 0.00 0.00 0.00 3.77
172 173 2.347490 CCTCCCTCACCACCAACG 59.653 66.667 0.00 0.00 0.00 4.10
173 174 2.347490 CTCCCTCACCACCAACGG 59.653 66.667 0.00 0.00 0.00 4.44
174 175 3.901797 CTCCCTCACCACCAACGGC 62.902 68.421 0.00 0.00 0.00 5.68
177 178 4.308458 CTCACCACCAACGGCCGA 62.308 66.667 35.90 4.31 0.00 5.54
178 179 4.308458 TCACCACCAACGGCCGAG 62.308 66.667 35.90 23.30 0.00 4.63
223 224 4.736896 GACGGCGGCGGAAGAACT 62.737 66.667 35.05 12.66 0.00 3.01
224 225 4.736896 ACGGCGGCGGAAGAACTC 62.737 66.667 35.05 0.00 0.00 3.01
225 226 4.436998 CGGCGGCGGAAGAACTCT 62.437 66.667 25.36 0.00 0.00 3.24
226 227 2.509561 GGCGGCGGAAGAACTCTC 60.510 66.667 9.78 0.00 0.00 3.20
227 228 2.509561 GCGGCGGAAGAACTCTCC 60.510 66.667 9.78 0.00 0.00 3.71
228 229 3.007973 GCGGCGGAAGAACTCTCCT 62.008 63.158 9.78 0.00 0.00 3.69
229 230 1.153745 CGGCGGAAGAACTCTCCTG 60.154 63.158 0.00 0.00 0.00 3.86
230 231 1.219393 GGCGGAAGAACTCTCCTGG 59.781 63.158 0.00 0.00 0.00 4.45
231 232 1.448717 GCGGAAGAACTCTCCTGGC 60.449 63.158 0.00 0.00 0.00 4.85
232 233 1.153745 CGGAAGAACTCTCCTGGCG 60.154 63.158 0.00 0.00 0.00 5.69
233 234 1.219393 GGAAGAACTCTCCTGGCGG 59.781 63.158 0.00 0.00 0.00 6.13
234 235 1.448717 GAAGAACTCTCCTGGCGGC 60.449 63.158 0.00 0.00 0.00 6.53
235 236 3.302347 AAGAACTCTCCTGGCGGCG 62.302 63.158 0.51 0.51 0.00 6.46
236 237 4.821589 GAACTCTCCTGGCGGCGG 62.822 72.222 11.58 11.58 0.00 6.13
261 262 4.900154 CGAGCTCGCCTTCTTTCT 57.100 55.556 25.07 0.00 0.00 2.52
262 263 3.129792 CGAGCTCGCCTTCTTTCTT 57.870 52.632 25.07 0.00 0.00 2.52
263 264 0.995728 CGAGCTCGCCTTCTTTCTTC 59.004 55.000 25.07 0.00 0.00 2.87
264 265 0.995728 GAGCTCGCCTTCTTTCTTCG 59.004 55.000 0.00 0.00 0.00 3.79
265 266 0.390472 AGCTCGCCTTCTTTCTTCGG 60.390 55.000 0.00 0.00 0.00 4.30
266 267 1.362406 GCTCGCCTTCTTTCTTCGGG 61.362 60.000 0.00 0.00 0.00 5.14
267 268 0.037232 CTCGCCTTCTTTCTTCGGGT 60.037 55.000 0.00 0.00 0.00 5.28
268 269 0.320421 TCGCCTTCTTTCTTCGGGTG 60.320 55.000 0.00 0.00 0.00 4.61
269 270 0.320421 CGCCTTCTTTCTTCGGGTGA 60.320 55.000 0.00 0.00 0.00 4.02
270 271 1.876416 CGCCTTCTTTCTTCGGGTGAA 60.876 52.381 0.00 0.00 0.00 3.18
271 272 2.227194 GCCTTCTTTCTTCGGGTGAAA 58.773 47.619 0.00 0.00 32.66 2.69
272 273 2.226674 GCCTTCTTTCTTCGGGTGAAAG 59.773 50.000 14.82 14.82 46.85 2.62
280 281 6.518208 TTTCTTCGGGTGAAAGAAAGAAAA 57.482 33.333 6.88 0.00 32.50 2.29
281 282 5.494632 TCTTCGGGTGAAAGAAAGAAAAC 57.505 39.130 0.00 0.00 32.66 2.43
282 283 3.955771 TCGGGTGAAAGAAAGAAAACG 57.044 42.857 0.00 0.00 0.00 3.60
283 284 2.614983 TCGGGTGAAAGAAAGAAAACGG 59.385 45.455 0.00 0.00 0.00 4.44
284 285 2.739292 GGGTGAAAGAAAGAAAACGGC 58.261 47.619 0.00 0.00 0.00 5.68
285 286 2.361119 GGGTGAAAGAAAGAAAACGGCT 59.639 45.455 0.00 0.00 0.00 5.52
286 287 3.181479 GGGTGAAAGAAAGAAAACGGCTT 60.181 43.478 0.00 0.00 0.00 4.35
287 288 4.037089 GGGTGAAAGAAAGAAAACGGCTTA 59.963 41.667 0.00 0.00 0.00 3.09
288 289 5.450826 GGGTGAAAGAAAGAAAACGGCTTAA 60.451 40.000 0.00 0.00 0.00 1.85
289 290 6.037726 GGTGAAAGAAAGAAAACGGCTTAAA 58.962 36.000 0.00 0.00 0.00 1.52
290 291 6.700081 GGTGAAAGAAAGAAAACGGCTTAAAT 59.300 34.615 0.00 0.00 0.00 1.40
291 292 7.863877 GGTGAAAGAAAGAAAACGGCTTAAATA 59.136 33.333 0.00 0.00 0.00 1.40
292 293 8.902735 GTGAAAGAAAGAAAACGGCTTAAATAG 58.097 33.333 0.00 0.00 0.00 1.73
293 294 8.626526 TGAAAGAAAGAAAACGGCTTAAATAGT 58.373 29.630 0.00 0.00 0.00 2.12
295 296 9.888878 AAAGAAAGAAAACGGCTTAAATAGTAC 57.111 29.630 0.00 0.00 0.00 2.73
296 297 8.843885 AGAAAGAAAACGGCTTAAATAGTACT 57.156 30.769 0.00 0.00 0.00 2.73
297 298 9.281371 AGAAAGAAAACGGCTTAAATAGTACTT 57.719 29.630 0.00 0.00 0.00 2.24
298 299 9.888878 GAAAGAAAACGGCTTAAATAGTACTTT 57.111 29.630 0.00 0.00 0.00 2.66
305 306 9.550406 AACGGCTTAAATAGTACTTTATATGCA 57.450 29.630 0.00 0.00 0.00 3.96
306 307 9.550406 ACGGCTTAAATAGTACTTTATATGCAA 57.450 29.630 0.00 0.00 0.00 4.08
317 318 8.759782 AGTACTTTATATGCAAGTAGGACAAGT 58.240 33.333 8.78 0.00 37.39 3.16
318 319 9.032420 GTACTTTATATGCAAGTAGGACAAGTC 57.968 37.037 8.78 0.00 37.39 3.01
319 320 7.852263 ACTTTATATGCAAGTAGGACAAGTCT 58.148 34.615 0.00 0.00 32.48 3.24
320 321 7.982354 ACTTTATATGCAAGTAGGACAAGTCTC 59.018 37.037 0.00 0.00 32.48 3.36
321 322 5.939764 ATATGCAAGTAGGACAAGTCTCA 57.060 39.130 0.00 0.00 0.00 3.27
322 323 3.386768 TGCAAGTAGGACAAGTCTCAC 57.613 47.619 0.00 0.00 0.00 3.51
323 324 2.037251 TGCAAGTAGGACAAGTCTCACC 59.963 50.000 0.00 0.00 0.00 4.02
324 325 2.927014 GCAAGTAGGACAAGTCTCACCG 60.927 54.545 0.00 0.00 0.00 4.94
325 326 2.289592 AGTAGGACAAGTCTCACCGT 57.710 50.000 0.00 0.00 0.00 4.83
326 327 2.595238 AGTAGGACAAGTCTCACCGTT 58.405 47.619 0.00 0.00 0.00 4.44
327 328 2.963782 AGTAGGACAAGTCTCACCGTTT 59.036 45.455 0.00 0.00 0.00 3.60
328 329 4.147321 AGTAGGACAAGTCTCACCGTTTA 58.853 43.478 0.00 0.00 0.00 2.01
329 330 3.382048 AGGACAAGTCTCACCGTTTAC 57.618 47.619 0.00 0.00 0.00 2.01
330 331 2.696707 AGGACAAGTCTCACCGTTTACA 59.303 45.455 0.00 0.00 0.00 2.41
331 332 3.133362 AGGACAAGTCTCACCGTTTACAA 59.867 43.478 0.00 0.00 0.00 2.41
332 333 4.062991 GGACAAGTCTCACCGTTTACAAT 58.937 43.478 0.00 0.00 0.00 2.71
333 334 4.084013 GGACAAGTCTCACCGTTTACAATG 60.084 45.833 0.00 0.00 0.00 2.82
334 335 4.448210 ACAAGTCTCACCGTTTACAATGT 58.552 39.130 0.00 0.00 0.00 2.71
335 336 5.603596 ACAAGTCTCACCGTTTACAATGTA 58.396 37.500 0.00 0.00 0.00 2.29
336 337 6.050432 ACAAGTCTCACCGTTTACAATGTAA 58.950 36.000 1.08 1.08 0.00 2.41
337 338 6.539464 ACAAGTCTCACCGTTTACAATGTAAA 59.461 34.615 13.93 13.93 0.00 2.01
338 339 7.227910 ACAAGTCTCACCGTTTACAATGTAAAT 59.772 33.333 19.82 3.56 0.00 1.40
339 340 7.129109 AGTCTCACCGTTTACAATGTAAATG 57.871 36.000 23.93 23.93 0.00 2.32
340 341 6.932400 AGTCTCACCGTTTACAATGTAAATGA 59.068 34.615 29.44 22.27 0.00 2.57
341 342 7.442969 AGTCTCACCGTTTACAATGTAAATGAA 59.557 33.333 29.44 17.58 0.00 2.57
342 343 7.744715 GTCTCACCGTTTACAATGTAAATGAAG 59.255 37.037 29.44 23.20 0.00 3.02
343 344 7.442969 TCTCACCGTTTACAATGTAAATGAAGT 59.557 33.333 29.44 20.25 0.00 3.01
344 345 8.604640 TCACCGTTTACAATGTAAATGAAGTA 57.395 30.769 29.44 14.84 0.00 2.24
345 346 9.053840 TCACCGTTTACAATGTAAATGAAGTAA 57.946 29.630 29.44 11.23 0.00 2.24
346 347 9.666626 CACCGTTTACAATGTAAATGAAGTAAA 57.333 29.630 29.44 4.27 0.00 2.01
371 372 7.878547 AAAAACATGAAATTTGGAATGGTGT 57.121 28.000 0.00 0.00 0.00 4.16
372 373 7.495135 AAAACATGAAATTTGGAATGGTGTC 57.505 32.000 0.00 0.00 0.00 3.67
373 374 5.804944 ACATGAAATTTGGAATGGTGTCA 57.195 34.783 0.00 0.00 0.00 3.58
374 375 6.363167 ACATGAAATTTGGAATGGTGTCAT 57.637 33.333 0.00 0.00 34.56 3.06
375 376 6.167685 ACATGAAATTTGGAATGGTGTCATG 58.832 36.000 0.00 8.38 44.19 3.07
376 377 6.014413 ACATGAAATTTGGAATGGTGTCATGA 60.014 34.615 15.16 0.00 42.27 3.07
377 378 6.608539 TGAAATTTGGAATGGTGTCATGAT 57.391 33.333 0.00 0.00 33.18 2.45
378 379 7.715266 TGAAATTTGGAATGGTGTCATGATA 57.285 32.000 0.00 0.00 33.18 2.15
379 380 8.131847 TGAAATTTGGAATGGTGTCATGATAA 57.868 30.769 0.00 0.00 33.18 1.75
380 381 8.252417 TGAAATTTGGAATGGTGTCATGATAAG 58.748 33.333 0.00 0.00 33.18 1.73
381 382 7.959658 AATTTGGAATGGTGTCATGATAAGA 57.040 32.000 0.00 0.00 33.18 2.10
382 383 8.543293 AATTTGGAATGGTGTCATGATAAGAT 57.457 30.769 0.00 0.00 33.18 2.40
383 384 7.572523 TTTGGAATGGTGTCATGATAAGATC 57.427 36.000 0.00 0.00 33.18 2.75
384 385 6.505048 TGGAATGGTGTCATGATAAGATCT 57.495 37.500 0.00 0.00 33.18 2.75
385 386 6.528321 TGGAATGGTGTCATGATAAGATCTC 58.472 40.000 0.00 0.00 33.18 2.75
386 387 6.100134 TGGAATGGTGTCATGATAAGATCTCA 59.900 38.462 0.00 0.00 33.18 3.27
387 388 6.649973 GGAATGGTGTCATGATAAGATCTCAG 59.350 42.308 0.00 0.00 33.18 3.35
388 389 6.744175 ATGGTGTCATGATAAGATCTCAGT 57.256 37.500 0.00 0.00 31.34 3.41
389 390 7.846101 ATGGTGTCATGATAAGATCTCAGTA 57.154 36.000 0.00 0.00 31.34 2.74
390 391 7.846101 TGGTGTCATGATAAGATCTCAGTAT 57.154 36.000 0.00 0.00 0.00 2.12
391 392 8.255111 TGGTGTCATGATAAGATCTCAGTATT 57.745 34.615 0.00 0.00 0.00 1.89
392 393 8.363390 TGGTGTCATGATAAGATCTCAGTATTC 58.637 37.037 0.00 0.00 0.00 1.75
393 394 8.584157 GGTGTCATGATAAGATCTCAGTATTCT 58.416 37.037 0.00 0.00 0.00 2.40
396 397 9.767684 GTCATGATAAGATCTCAGTATTCTACG 57.232 37.037 0.00 0.00 0.00 3.51
397 398 9.508642 TCATGATAAGATCTCAGTATTCTACGT 57.491 33.333 0.00 0.00 0.00 3.57
410 411 9.529325 TCAGTATTCTACGTAAAAATGAGATGG 57.471 33.333 11.31 0.00 0.00 3.51
411 412 9.314321 CAGTATTCTACGTAAAAATGAGATGGT 57.686 33.333 11.31 0.00 0.00 3.55
412 413 9.886132 AGTATTCTACGTAAAAATGAGATGGTT 57.114 29.630 11.31 0.00 0.00 3.67
443 444 5.726980 AAAATTCATGTGCCTTGCTTAGA 57.273 34.783 0.00 0.00 0.00 2.10
444 445 5.726980 AAATTCATGTGCCTTGCTTAGAA 57.273 34.783 0.00 0.00 0.00 2.10
445 446 5.726980 AATTCATGTGCCTTGCTTAGAAA 57.273 34.783 0.00 0.00 0.00 2.52
446 447 5.927281 ATTCATGTGCCTTGCTTAGAAAT 57.073 34.783 0.00 0.00 0.00 2.17
447 448 4.970662 TCATGTGCCTTGCTTAGAAATC 57.029 40.909 0.00 0.00 0.00 2.17
448 449 4.334552 TCATGTGCCTTGCTTAGAAATCA 58.665 39.130 0.00 0.00 0.00 2.57
449 450 4.397103 TCATGTGCCTTGCTTAGAAATCAG 59.603 41.667 0.00 0.00 0.00 2.90
450 451 3.084039 TGTGCCTTGCTTAGAAATCAGG 58.916 45.455 0.00 0.00 0.00 3.86
451 452 2.094675 TGCCTTGCTTAGAAATCAGGC 58.905 47.619 0.83 0.83 41.18 4.85
452 453 1.406898 GCCTTGCTTAGAAATCAGGCC 59.593 52.381 0.00 0.00 35.36 5.19
453 454 1.672881 CCTTGCTTAGAAATCAGGCCG 59.327 52.381 0.00 0.00 0.00 6.13
454 455 2.359900 CTTGCTTAGAAATCAGGCCGT 58.640 47.619 0.00 0.00 0.00 5.68
455 456 2.489938 TGCTTAGAAATCAGGCCGTT 57.510 45.000 0.00 0.00 0.00 4.44
456 457 2.356135 TGCTTAGAAATCAGGCCGTTC 58.644 47.619 0.00 0.00 0.00 3.95
457 458 2.290008 TGCTTAGAAATCAGGCCGTTCA 60.290 45.455 0.00 0.00 0.00 3.18
458 459 2.945668 GCTTAGAAATCAGGCCGTTCAT 59.054 45.455 0.00 0.00 0.00 2.57
459 460 3.002759 GCTTAGAAATCAGGCCGTTCATC 59.997 47.826 0.00 0.00 0.00 2.92
460 461 2.044123 AGAAATCAGGCCGTTCATCC 57.956 50.000 0.00 0.00 0.00 3.51
461 462 1.281867 AGAAATCAGGCCGTTCATCCA 59.718 47.619 0.00 0.00 0.00 3.41
462 463 2.092212 AGAAATCAGGCCGTTCATCCAT 60.092 45.455 0.00 0.00 0.00 3.41
463 464 3.136443 AGAAATCAGGCCGTTCATCCATA 59.864 43.478 0.00 0.00 0.00 2.74
464 465 2.550830 ATCAGGCCGTTCATCCATAC 57.449 50.000 0.00 0.00 0.00 2.39
465 466 0.104120 TCAGGCCGTTCATCCATACG 59.896 55.000 0.00 0.00 37.50 3.06
466 467 0.179084 CAGGCCGTTCATCCATACGT 60.179 55.000 0.00 0.00 36.09 3.57
467 468 0.539986 AGGCCGTTCATCCATACGTT 59.460 50.000 0.00 0.00 36.09 3.99
468 469 1.065709 AGGCCGTTCATCCATACGTTT 60.066 47.619 0.00 0.00 36.09 3.60
469 470 1.063469 GGCCGTTCATCCATACGTTTG 59.937 52.381 0.00 0.00 36.09 2.93
470 471 1.063469 GCCGTTCATCCATACGTTTGG 59.937 52.381 17.96 17.96 36.09 3.28
471 472 1.063469 CCGTTCATCCATACGTTTGGC 59.937 52.381 19.07 5.05 36.66 4.52
472 473 1.735018 CGTTCATCCATACGTTTGGCA 59.265 47.619 19.07 9.39 36.66 4.92
473 474 2.354510 CGTTCATCCATACGTTTGGCAT 59.645 45.455 19.07 11.08 36.66 4.40
474 475 3.694734 GTTCATCCATACGTTTGGCATG 58.305 45.455 19.07 20.05 36.66 4.06
475 476 2.296792 TCATCCATACGTTTGGCATGG 58.703 47.619 19.07 13.38 40.55 3.66
476 477 2.023673 CATCCATACGTTTGGCATGGT 58.976 47.619 19.07 2.57 40.18 3.55
477 478 2.208132 TCCATACGTTTGGCATGGTT 57.792 45.000 19.07 0.00 40.18 3.67
478 479 2.520069 TCCATACGTTTGGCATGGTTT 58.480 42.857 19.07 0.00 40.18 3.27
479 480 3.687125 TCCATACGTTTGGCATGGTTTA 58.313 40.909 19.07 0.00 40.18 2.01
480 481 3.692101 TCCATACGTTTGGCATGGTTTAG 59.308 43.478 19.07 0.00 40.18 1.85
481 482 3.181491 CCATACGTTTGGCATGGTTTAGG 60.181 47.826 12.25 0.00 35.49 2.69
482 483 1.989706 ACGTTTGGCATGGTTTAGGT 58.010 45.000 0.00 0.00 0.00 3.08
483 484 2.312390 ACGTTTGGCATGGTTTAGGTT 58.688 42.857 0.00 0.00 0.00 3.50
484 485 2.295070 ACGTTTGGCATGGTTTAGGTTC 59.705 45.455 0.00 0.00 0.00 3.62
485 486 2.352323 CGTTTGGCATGGTTTAGGTTCC 60.352 50.000 0.00 0.00 0.00 3.62
486 487 2.897326 GTTTGGCATGGTTTAGGTTCCT 59.103 45.455 0.00 0.00 0.00 3.36
487 488 2.214376 TGGCATGGTTTAGGTTCCTG 57.786 50.000 1.12 0.00 0.00 3.86
488 489 1.272425 TGGCATGGTTTAGGTTCCTGG 60.272 52.381 1.12 0.00 0.00 4.45
489 490 0.817654 GCATGGTTTAGGTTCCTGGC 59.182 55.000 1.12 0.00 0.00 4.85
490 491 1.890573 GCATGGTTTAGGTTCCTGGCA 60.891 52.381 1.12 0.00 0.00 4.92
491 492 2.738743 CATGGTTTAGGTTCCTGGCAT 58.261 47.619 1.12 0.00 0.00 4.40
492 493 2.214376 TGGTTTAGGTTCCTGGCATG 57.786 50.000 1.12 0.00 0.00 4.06
493 494 1.272425 TGGTTTAGGTTCCTGGCATGG 60.272 52.381 1.12 0.00 0.00 3.66
494 495 1.272480 GGTTTAGGTTCCTGGCATGGT 60.272 52.381 1.12 0.00 0.00 3.55
495 496 2.525368 GTTTAGGTTCCTGGCATGGTT 58.475 47.619 1.12 0.00 0.00 3.67
496 497 2.897326 GTTTAGGTTCCTGGCATGGTTT 59.103 45.455 1.12 0.00 0.00 3.27
497 498 4.083565 GTTTAGGTTCCTGGCATGGTTTA 58.916 43.478 1.12 0.00 0.00 2.01
498 499 2.514458 AGGTTCCTGGCATGGTTTAG 57.486 50.000 0.00 0.00 0.00 1.85
499 500 1.005924 AGGTTCCTGGCATGGTTTAGG 59.994 52.381 0.00 0.00 0.00 2.69
500 501 1.272480 GGTTCCTGGCATGGTTTAGGT 60.272 52.381 0.00 0.00 0.00 3.08
501 502 2.525368 GTTCCTGGCATGGTTTAGGTT 58.475 47.619 0.00 0.00 0.00 3.50
502 503 2.492088 GTTCCTGGCATGGTTTAGGTTC 59.508 50.000 0.00 0.00 0.00 3.62
503 504 1.005450 TCCTGGCATGGTTTAGGTTCC 59.995 52.381 0.00 0.00 0.00 3.62
504 505 1.094785 CTGGCATGGTTTAGGTTCCG 58.905 55.000 0.00 0.00 0.00 4.30
505 506 0.322997 TGGCATGGTTTAGGTTCCGG 60.323 55.000 0.00 0.00 0.00 5.14
506 507 1.035385 GGCATGGTTTAGGTTCCGGG 61.035 60.000 0.00 0.00 0.00 5.73
507 508 1.663379 GCATGGTTTAGGTTCCGGGC 61.663 60.000 0.00 0.00 0.00 6.13
508 509 0.034477 CATGGTTTAGGTTCCGGGCT 60.034 55.000 0.00 0.00 0.00 5.19
509 510 1.210967 CATGGTTTAGGTTCCGGGCTA 59.789 52.381 0.00 0.00 0.00 3.93
510 511 1.587066 TGGTTTAGGTTCCGGGCTAT 58.413 50.000 0.00 0.00 0.00 2.97
511 512 2.761809 TGGTTTAGGTTCCGGGCTATA 58.238 47.619 0.00 0.00 0.00 1.31
512 513 2.701951 TGGTTTAGGTTCCGGGCTATAG 59.298 50.000 0.00 0.00 0.00 1.31
513 514 2.967887 GGTTTAGGTTCCGGGCTATAGA 59.032 50.000 3.21 0.00 0.00 1.98
514 515 3.581770 GGTTTAGGTTCCGGGCTATAGAT 59.418 47.826 3.21 0.00 0.00 1.98
515 516 4.562963 GGTTTAGGTTCCGGGCTATAGATG 60.563 50.000 3.21 0.00 0.00 2.90
516 517 0.977395 AGGTTCCGGGCTATAGATGC 59.023 55.000 3.21 0.00 0.00 3.91
517 518 0.977395 GGTTCCGGGCTATAGATGCT 59.023 55.000 3.21 0.00 0.00 3.79
518 519 1.066787 GGTTCCGGGCTATAGATGCTC 60.067 57.143 3.21 0.00 0.00 4.26
519 520 1.896465 GTTCCGGGCTATAGATGCTCT 59.104 52.381 3.21 0.00 0.00 4.09
520 521 3.090037 GTTCCGGGCTATAGATGCTCTA 58.910 50.000 3.21 0.00 32.87 2.43
521 522 3.451402 TCCGGGCTATAGATGCTCTAA 57.549 47.619 3.21 0.00 31.96 2.10
522 523 3.090037 TCCGGGCTATAGATGCTCTAAC 58.910 50.000 3.21 0.00 31.96 2.34
523 524 2.159366 CCGGGCTATAGATGCTCTAACG 60.159 54.545 3.21 0.00 31.96 3.18
524 525 2.747989 CGGGCTATAGATGCTCTAACGA 59.252 50.000 3.21 0.00 31.96 3.85
525 526 3.378742 CGGGCTATAGATGCTCTAACGAT 59.621 47.826 3.21 0.00 31.96 3.73
526 527 4.677584 GGGCTATAGATGCTCTAACGATG 58.322 47.826 3.21 0.00 31.96 3.84
527 528 4.109050 GGCTATAGATGCTCTAACGATGC 58.891 47.826 3.21 0.00 31.96 3.91
528 529 3.788694 GCTATAGATGCTCTAACGATGCG 59.211 47.826 3.21 0.00 31.96 4.73
529 530 4.437524 GCTATAGATGCTCTAACGATGCGA 60.438 45.833 3.21 0.00 31.96 5.10
530 531 2.414058 AGATGCTCTAACGATGCGAG 57.586 50.000 0.00 0.00 0.00 5.03
531 532 1.678627 AGATGCTCTAACGATGCGAGT 59.321 47.619 0.00 0.00 0.00 4.18
532 533 2.879026 AGATGCTCTAACGATGCGAGTA 59.121 45.455 0.00 0.00 0.00 2.59
533 534 3.504134 AGATGCTCTAACGATGCGAGTAT 59.496 43.478 0.00 0.00 33.70 2.12
534 535 3.710326 TGCTCTAACGATGCGAGTATT 57.290 42.857 0.00 0.00 0.00 1.89
535 536 3.629058 TGCTCTAACGATGCGAGTATTC 58.371 45.455 0.00 0.00 0.00 1.75
574 575 5.164292 CGAGTATTCGCAAAACATGTTGTTG 60.164 40.000 12.82 17.66 38.72 3.33
575 576 5.587289 AGTATTCGCAAAACATGTTGTTGT 58.413 33.333 22.78 12.86 40.14 3.32
576 577 6.039616 AGTATTCGCAAAACATGTTGTTGTT 58.960 32.000 22.78 10.09 40.14 2.83
601 602 6.817765 TCAGTTGGAGGATAATGTTTTGAC 57.182 37.500 0.00 0.00 0.00 3.18
627 628 1.804748 CAAAACCGGACCTGTAGCTTC 59.195 52.381 9.46 0.00 0.00 3.86
628 629 1.053424 AAACCGGACCTGTAGCTTCA 58.947 50.000 9.46 0.00 0.00 3.02
630 631 0.824759 ACCGGACCTGTAGCTTCATC 59.175 55.000 9.46 0.00 0.00 2.92
631 632 0.249073 CCGGACCTGTAGCTTCATCG 60.249 60.000 0.00 0.00 0.00 3.84
637 647 4.202223 GGACCTGTAGCTTCATCGGAAATA 60.202 45.833 5.74 0.00 31.35 1.40
648 658 3.146783 CGGAAATACCCGCAGACAA 57.853 52.632 0.00 0.00 43.25 3.18
660 670 1.444119 GCAGACAAAGACACCGGCAA 61.444 55.000 0.00 0.00 0.00 4.52
679 689 3.304928 GCAACAAGCAGATACACAAAGCT 60.305 43.478 0.00 0.00 44.79 3.74
843 857 4.335594 GGAATATCCAAAACCGAACTGGAG 59.664 45.833 0.00 0.00 42.40 3.86
932 956 0.040499 ACACACTCCTCTCCCTCTCC 59.960 60.000 0.00 0.00 0.00 3.71
933 957 0.334676 CACACTCCTCTCCCTCTCCT 59.665 60.000 0.00 0.00 0.00 3.69
934 958 0.629058 ACACTCCTCTCCCTCTCCTC 59.371 60.000 0.00 0.00 0.00 3.71
970 994 3.005791 CCCACCAAAACCTAAGCAAGAAG 59.994 47.826 0.00 0.00 0.00 2.85
1284 1311 1.035932 GGGATGACGACGAGGAGGAA 61.036 60.000 0.00 0.00 0.00 3.36
1410 1437 2.417787 GCCCATGTTTCATTGCTTCTCC 60.418 50.000 0.00 0.00 0.00 3.71
1433 1460 4.934602 CCTGTCTTCACTTTGAGATCCTTC 59.065 45.833 0.00 0.00 0.00 3.46
1441 1468 4.457257 CACTTTGAGATCCTTCCAGAAACC 59.543 45.833 0.00 0.00 0.00 3.27
1570 1597 7.227512 GCTATCTGTTTGTGGCTACTTCATAAT 59.772 37.037 0.64 0.00 0.00 1.28
1587 1614 1.549203 AATGGATTGGTCTGTGGCAC 58.451 50.000 11.55 11.55 0.00 5.01
1797 1824 4.466370 TCTTCACACCTATCTAGTGTTGGG 59.534 45.833 0.00 0.00 46.07 4.12
2052 2080 4.629200 CCTTCTAGTGTTGATTCTGAGTGC 59.371 45.833 0.00 0.00 0.00 4.40
2146 2174 4.096682 GTGAGGCTCTTGTACTAGATTCGT 59.903 45.833 16.72 4.92 0.00 3.85
2152 2180 7.501559 AGGCTCTTGTACTAGATTCGTAATGTA 59.498 37.037 7.49 0.00 0.00 2.29
2196 2226 3.808728 TCTTATGCACATGGTTAGCTCC 58.191 45.455 0.00 0.00 0.00 4.70
2300 2330 3.883830 AGAGACACATCCTAGCTTGTG 57.116 47.619 13.48 13.48 46.76 3.33
2364 2394 6.655003 CCAGGCTGATCAAGTTTTAAAGTAGA 59.345 38.462 17.94 0.00 0.00 2.59
2384 2414 2.861462 TTCTTTCTTGTTTGCACCGG 57.139 45.000 0.00 0.00 0.00 5.28
2466 2496 9.195411 CTTTGTTTTGCTCTGCATTTTATAGAA 57.805 29.630 0.00 0.00 38.76 2.10
2495 2553 2.289565 GTTGGGAGCTTTTATCCTCGG 58.710 52.381 0.00 0.00 37.01 4.63
2539 2597 6.207417 TCTCCTGCTTGTTCTCCTTAAAAATG 59.793 38.462 0.00 0.00 0.00 2.32
3064 3124 4.032331 GCTCAGAAAAACGTAGAGCTGATC 59.968 45.833 10.29 4.71 46.06 2.92
3207 3267 6.983890 CCATGCCCTAACCATTTAAATTACAC 59.016 38.462 0.00 0.00 0.00 2.90
3233 3293 6.742718 CCAAATCATACAGTACTTTTCTTGCG 59.257 38.462 0.00 0.00 0.00 4.85
3253 3313 2.159827 CGTCTTTAAGCTGCCTTCGAAC 60.160 50.000 0.00 0.00 32.47 3.95
3254 3314 2.066262 TCTTTAAGCTGCCTTCGAACG 58.934 47.619 0.00 0.00 32.47 3.95
3263 3330 0.784778 GCCTTCGAACGTTCACTGAG 59.215 55.000 26.71 16.80 0.00 3.35
3269 3336 2.292569 TCGAACGTTCACTGAGCTTAGT 59.707 45.455 26.71 5.11 0.00 2.24
3312 3379 2.671619 GCCTAAGGTTGCCACGCA 60.672 61.111 0.00 0.00 36.47 5.24
3381 3458 2.684881 CACATCTTAGGATTGCCACACC 59.315 50.000 0.00 0.00 36.29 4.16
3455 3532 2.955660 CCAACTTGTGGCTCCAACTTTA 59.044 45.455 0.00 0.00 41.72 1.85
3473 3550 7.393515 CCAACTTTATTGAACTAACCTTAGGCT 59.606 37.037 0.00 0.00 35.08 4.58
3492 3569 4.647399 AGGCTAGTTTGGCAAAAACTTGTA 59.353 37.500 15.29 4.27 40.58 2.41
3496 3573 4.432712 AGTTTGGCAAAAACTTGTAGCAG 58.567 39.130 15.29 0.00 37.18 4.24
3506 3583 1.349026 ACTTGTAGCAGAGTGTGGCAT 59.651 47.619 0.00 0.00 0.00 4.40
3595 3672 4.534797 ACGAGGTTACTATTAGACCTGCT 58.465 43.478 8.44 0.00 43.59 4.24
3616 3693 5.048782 TGCTTGTTTAATTGCTCGATCTTGT 60.049 36.000 0.00 0.00 0.00 3.16
3641 3718 7.701078 GTCTCTGTTCGAACTTTAGCATGTATA 59.299 37.037 27.32 3.11 0.00 1.47
4438 4553 1.431243 TGGTTGAGCTAATTTGGGGGT 59.569 47.619 0.00 0.00 0.00 4.95
4495 4611 0.741915 TTGCAACGGTCTCCAAAACC 59.258 50.000 0.00 0.00 0.00 3.27
4512 4628 2.105006 ACCGCGAGTCTGACTACTAA 57.895 50.000 8.23 0.00 0.00 2.24
4514 4630 3.801698 ACCGCGAGTCTGACTACTAATA 58.198 45.455 8.23 0.00 0.00 0.98
4515 4631 3.559242 ACCGCGAGTCTGACTACTAATAC 59.441 47.826 8.23 0.00 0.00 1.89
4626 4757 2.437651 TGTGAACCACATGAAGTCCAGA 59.562 45.455 0.00 0.00 39.62 3.86
4653 4784 8.854979 TTCTTTGTGTCTATTTTGTCATGTTG 57.145 30.769 0.00 0.00 0.00 3.33
4708 4839 3.096092 ACTGGAAAGAACAAAGGTGCAA 58.904 40.909 0.00 0.00 0.00 4.08
4751 4882 2.667481 ACAAAATCATGCGCCAAATTCG 59.333 40.909 4.18 0.00 0.00 3.34
4799 4930 4.202202 CCAGCCATGTCTAAGACCTTCTAG 60.202 50.000 0.00 0.00 0.00 2.43
4833 4964 4.067896 CACACAGCAGAAGGTTAATCAGT 58.932 43.478 0.00 0.00 0.00 3.41
4868 5030 0.321564 AGCAGCAAAGATGTACGCCA 60.322 50.000 0.00 0.00 0.00 5.69
4900 5062 6.974048 GGAGTTTGTTAAATGTTAACCGTTGT 59.026 34.615 2.48 0.00 0.00 3.32
4923 5085 0.889186 AAGCGGTGACACCATGTTCC 60.889 55.000 24.18 5.08 38.47 3.62
4954 5117 6.239148 CATGTATCAGGACTACTGCACATACT 60.239 42.308 7.61 0.00 44.10 2.12
5086 6425 2.957402 AGACATCAAGCCCTCAAACA 57.043 45.000 0.00 0.00 0.00 2.83
5239 6580 5.531634 ACAGTGTTTTGCATTGGTATCTTG 58.468 37.500 0.00 0.00 38.89 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.579586 CCATATGGTTGGGGATGGATTTG 59.420 47.826 14.09 0.00 41.23 2.32
1 2 3.860607 CCATATGGTTGGGGATGGATTT 58.139 45.455 14.09 0.00 41.23 2.17
2 3 2.493313 GCCATATGGTTGGGGATGGATT 60.493 50.000 22.79 0.00 41.23 3.01
3 4 1.077663 GCCATATGGTTGGGGATGGAT 59.922 52.381 22.79 0.00 41.23 3.41
4 5 0.482446 GCCATATGGTTGGGGATGGA 59.518 55.000 22.79 0.00 41.23 3.41
5 6 0.542702 GGCCATATGGTTGGGGATGG 60.543 60.000 22.79 0.00 41.58 3.51
6 7 0.895100 CGGCCATATGGTTGGGGATG 60.895 60.000 22.79 1.19 37.24 3.51
7 8 1.065410 TCGGCCATATGGTTGGGGAT 61.065 55.000 22.79 0.00 37.24 3.85
8 9 1.065410 ATCGGCCATATGGTTGGGGA 61.065 55.000 22.79 12.83 37.24 4.81
9 10 0.609131 GATCGGCCATATGGTTGGGG 60.609 60.000 22.79 8.19 37.24 4.96
10 11 0.955428 CGATCGGCCATATGGTTGGG 60.955 60.000 22.79 9.85 37.24 4.12
11 12 1.577328 GCGATCGGCCATATGGTTGG 61.577 60.000 22.79 12.20 39.94 3.77
12 13 0.603707 AGCGATCGGCCATATGGTTG 60.604 55.000 22.79 15.12 45.17 3.77
13 14 0.108585 AAGCGATCGGCCATATGGTT 59.891 50.000 22.79 3.96 45.17 3.67
14 15 0.320771 GAAGCGATCGGCCATATGGT 60.321 55.000 22.79 2.68 45.17 3.55
15 16 0.320683 TGAAGCGATCGGCCATATGG 60.321 55.000 18.07 18.07 45.17 2.74
16 17 1.662629 GATGAAGCGATCGGCCATATG 59.337 52.381 18.30 0.00 45.17 1.78
17 18 1.737029 CGATGAAGCGATCGGCCATAT 60.737 52.381 18.30 0.00 45.17 1.78
18 19 0.388520 CGATGAAGCGATCGGCCATA 60.389 55.000 18.30 0.00 45.17 2.74
19 20 1.665916 CGATGAAGCGATCGGCCAT 60.666 57.895 18.30 8.75 45.17 4.40
20 21 2.279451 CGATGAAGCGATCGGCCA 60.279 61.111 18.30 4.34 45.17 5.36
24 25 0.529773 TTTCCCCGATGAAGCGATCG 60.530 55.000 11.69 11.69 44.00 3.69
25 26 1.202533 TCTTTCCCCGATGAAGCGATC 60.203 52.381 0.00 0.00 0.00 3.69
26 27 0.830648 TCTTTCCCCGATGAAGCGAT 59.169 50.000 0.00 0.00 0.00 4.58
27 28 0.830648 ATCTTTCCCCGATGAAGCGA 59.169 50.000 0.00 0.00 0.00 4.93
28 29 2.526304 TATCTTTCCCCGATGAAGCG 57.474 50.000 0.00 0.00 0.00 4.68
29 30 4.008074 TCATATCTTTCCCCGATGAAGC 57.992 45.455 0.00 0.00 0.00 3.86
31 32 5.887214 TCTTCATATCTTTCCCCGATGAA 57.113 39.130 0.00 0.00 35.71 2.57
32 33 5.887214 TTCTTCATATCTTTCCCCGATGA 57.113 39.130 0.00 0.00 0.00 2.92
33 34 6.471146 AGATTCTTCATATCTTTCCCCGATG 58.529 40.000 0.00 0.00 0.00 3.84
34 35 6.694445 AGATTCTTCATATCTTTCCCCGAT 57.306 37.500 0.00 0.00 0.00 4.18
35 36 6.500589 AAGATTCTTCATATCTTTCCCCGA 57.499 37.500 0.00 0.00 38.81 5.14
36 37 8.854614 ATAAAGATTCTTCATATCTTTCCCCG 57.145 34.615 12.57 0.00 44.80 5.73
42 43 8.502387 GCGCTGAATAAAGATTCTTCATATCTT 58.498 33.333 0.00 0.00 42.58 2.40
43 44 7.118971 GGCGCTGAATAAAGATTCTTCATATCT 59.881 37.037 7.64 0.00 41.87 1.98
44 45 7.095060 TGGCGCTGAATAAAGATTCTTCATATC 60.095 37.037 7.64 0.00 41.87 1.63
45 46 6.712095 TGGCGCTGAATAAAGATTCTTCATAT 59.288 34.615 7.64 0.00 41.87 1.78
46 47 6.017934 GTGGCGCTGAATAAAGATTCTTCATA 60.018 38.462 7.64 0.00 41.87 2.15
47 48 4.883585 TGGCGCTGAATAAAGATTCTTCAT 59.116 37.500 7.64 0.00 41.87 2.57
48 49 4.094887 GTGGCGCTGAATAAAGATTCTTCA 59.905 41.667 7.64 0.00 41.87 3.02
49 50 4.496507 GGTGGCGCTGAATAAAGATTCTTC 60.497 45.833 7.64 0.00 41.87 2.87
50 51 3.378427 GGTGGCGCTGAATAAAGATTCTT 59.622 43.478 7.64 0.00 41.87 2.52
51 52 2.945668 GGTGGCGCTGAATAAAGATTCT 59.054 45.455 7.64 0.00 41.87 2.40
52 53 2.682856 TGGTGGCGCTGAATAAAGATTC 59.317 45.455 7.64 0.00 41.72 2.52
53 54 2.423538 GTGGTGGCGCTGAATAAAGATT 59.576 45.455 7.64 0.00 0.00 2.40
54 55 2.017049 GTGGTGGCGCTGAATAAAGAT 58.983 47.619 7.64 0.00 0.00 2.40
55 56 1.448985 GTGGTGGCGCTGAATAAAGA 58.551 50.000 7.64 0.00 0.00 2.52
56 57 0.451783 GGTGGTGGCGCTGAATAAAG 59.548 55.000 7.64 0.00 0.00 1.85
57 58 0.250945 TGGTGGTGGCGCTGAATAAA 60.251 50.000 7.64 0.00 0.00 1.40
58 59 0.958382 GTGGTGGTGGCGCTGAATAA 60.958 55.000 7.64 0.00 0.00 1.40
59 60 1.376683 GTGGTGGTGGCGCTGAATA 60.377 57.895 7.64 0.00 0.00 1.75
60 61 2.672996 GTGGTGGTGGCGCTGAAT 60.673 61.111 7.64 0.00 0.00 2.57
61 62 4.947147 GGTGGTGGTGGCGCTGAA 62.947 66.667 7.64 0.00 0.00 3.02
80 81 4.735132 TCGTCTTGGCTTCGGCGG 62.735 66.667 7.21 0.00 42.91 6.13
81 82 2.509336 ATCGTCTTGGCTTCGGCG 60.509 61.111 0.00 0.00 42.91 6.46
82 83 1.019278 TTCATCGTCTTGGCTTCGGC 61.019 55.000 0.00 0.00 40.88 5.54
83 84 0.721718 GTTCATCGTCTTGGCTTCGG 59.278 55.000 0.00 0.00 0.00 4.30
84 85 1.428448 TGTTCATCGTCTTGGCTTCG 58.572 50.000 0.00 0.00 0.00 3.79
85 86 3.686726 AGATTGTTCATCGTCTTGGCTTC 59.313 43.478 0.00 0.00 36.93 3.86
86 87 3.679389 AGATTGTTCATCGTCTTGGCTT 58.321 40.909 0.00 0.00 36.93 4.35
87 88 3.340814 AGATTGTTCATCGTCTTGGCT 57.659 42.857 0.00 0.00 36.93 4.75
88 89 4.870426 TCTTAGATTGTTCATCGTCTTGGC 59.130 41.667 0.00 0.00 36.93 4.52
89 90 6.968131 TTCTTAGATTGTTCATCGTCTTGG 57.032 37.500 0.00 0.00 36.93 3.61
90 91 8.417780 AGATTCTTAGATTGTTCATCGTCTTG 57.582 34.615 0.00 0.00 36.93 3.02
91 92 9.743057 CTAGATTCTTAGATTGTTCATCGTCTT 57.257 33.333 0.00 0.00 36.93 3.01
92 93 9.126151 TCTAGATTCTTAGATTGTTCATCGTCT 57.874 33.333 0.00 0.00 36.93 4.18
93 94 9.176181 GTCTAGATTCTTAGATTGTTCATCGTC 57.824 37.037 0.00 0.00 36.93 4.20
94 95 8.908903 AGTCTAGATTCTTAGATTGTTCATCGT 58.091 33.333 0.00 0.00 36.93 3.73
102 103 9.255304 GCCTTTGTAGTCTAGATTCTTAGATTG 57.745 37.037 0.00 0.00 32.63 2.67
103 104 8.425703 GGCCTTTGTAGTCTAGATTCTTAGATT 58.574 37.037 0.00 0.00 32.63 2.40
104 105 7.787424 AGGCCTTTGTAGTCTAGATTCTTAGAT 59.213 37.037 0.00 0.00 32.63 1.98
105 106 7.126733 AGGCCTTTGTAGTCTAGATTCTTAGA 58.873 38.462 0.00 0.00 0.00 2.10
106 107 7.354751 AGGCCTTTGTAGTCTAGATTCTTAG 57.645 40.000 0.00 0.00 0.00 2.18
107 108 8.834004 TTAGGCCTTTGTAGTCTAGATTCTTA 57.166 34.615 12.58 0.00 0.00 2.10
108 109 7.735326 TTAGGCCTTTGTAGTCTAGATTCTT 57.265 36.000 12.58 0.00 0.00 2.52
109 110 7.735326 TTTAGGCCTTTGTAGTCTAGATTCT 57.265 36.000 12.58 0.00 0.00 2.40
110 111 8.666573 GTTTTTAGGCCTTTGTAGTCTAGATTC 58.333 37.037 12.58 0.00 0.00 2.52
111 112 7.333672 CGTTTTTAGGCCTTTGTAGTCTAGATT 59.666 37.037 12.58 0.00 0.00 2.40
112 113 6.817140 CGTTTTTAGGCCTTTGTAGTCTAGAT 59.183 38.462 12.58 0.00 0.00 1.98
113 114 6.015180 TCGTTTTTAGGCCTTTGTAGTCTAGA 60.015 38.462 12.58 0.00 0.00 2.43
114 115 6.161381 TCGTTTTTAGGCCTTTGTAGTCTAG 58.839 40.000 12.58 0.00 0.00 2.43
115 116 6.100404 TCGTTTTTAGGCCTTTGTAGTCTA 57.900 37.500 12.58 0.00 0.00 2.59
116 117 4.964593 TCGTTTTTAGGCCTTTGTAGTCT 58.035 39.130 12.58 0.00 0.00 3.24
117 118 5.410439 TGATCGTTTTTAGGCCTTTGTAGTC 59.590 40.000 12.58 1.01 0.00 2.59
118 119 5.180680 GTGATCGTTTTTAGGCCTTTGTAGT 59.819 40.000 12.58 0.00 0.00 2.73
119 120 5.180492 TGTGATCGTTTTTAGGCCTTTGTAG 59.820 40.000 12.58 0.00 0.00 2.74
120 121 5.064558 TGTGATCGTTTTTAGGCCTTTGTA 58.935 37.500 12.58 0.00 0.00 2.41
121 122 3.886505 TGTGATCGTTTTTAGGCCTTTGT 59.113 39.130 12.58 0.00 0.00 2.83
122 123 4.497473 TGTGATCGTTTTTAGGCCTTTG 57.503 40.909 12.58 0.00 0.00 2.77
123 124 4.618227 GCATGTGATCGTTTTTAGGCCTTT 60.618 41.667 12.58 0.00 0.00 3.11
124 125 3.119495 GCATGTGATCGTTTTTAGGCCTT 60.119 43.478 12.58 0.00 0.00 4.35
125 126 2.423538 GCATGTGATCGTTTTTAGGCCT 59.576 45.455 11.78 11.78 0.00 5.19
126 127 2.791158 CGCATGTGATCGTTTTTAGGCC 60.791 50.000 0.00 0.00 0.00 5.19
127 128 2.159572 ACGCATGTGATCGTTTTTAGGC 60.160 45.455 14.43 0.00 35.09 3.93
128 129 3.740044 ACGCATGTGATCGTTTTTAGG 57.260 42.857 14.43 0.00 35.09 2.69
129 130 4.707563 TCAACGCATGTGATCGTTTTTAG 58.292 39.130 14.43 0.00 45.25 1.85
130 131 4.733972 TCAACGCATGTGATCGTTTTTA 57.266 36.364 14.43 0.00 45.25 1.52
131 132 3.617540 TCAACGCATGTGATCGTTTTT 57.382 38.095 14.43 0.00 45.25 1.94
132 133 3.188254 TCATCAACGCATGTGATCGTTTT 59.812 39.130 14.43 0.00 45.25 2.43
133 134 2.741517 TCATCAACGCATGTGATCGTTT 59.258 40.909 14.43 0.00 45.25 3.60
135 136 1.660607 GTCATCAACGCATGTGATCGT 59.339 47.619 14.43 1.18 41.06 3.73
136 137 1.004610 GGTCATCAACGCATGTGATCG 60.005 52.381 14.43 0.44 0.00 3.69
137 138 2.283298 AGGTCATCAACGCATGTGATC 58.717 47.619 14.43 0.00 0.00 2.92
138 139 2.283298 GAGGTCATCAACGCATGTGAT 58.717 47.619 14.43 2.05 0.00 3.06
139 140 1.675714 GGAGGTCATCAACGCATGTGA 60.676 52.381 14.43 0.00 0.00 3.58
140 141 0.729116 GGAGGTCATCAACGCATGTG 59.271 55.000 4.30 4.30 0.00 3.21
141 142 0.392998 GGGAGGTCATCAACGCATGT 60.393 55.000 0.00 0.00 0.00 3.21
142 143 0.107508 AGGGAGGTCATCAACGCATG 60.108 55.000 0.00 0.00 0.00 4.06
143 144 0.179000 GAGGGAGGTCATCAACGCAT 59.821 55.000 0.00 0.00 0.00 4.73
144 145 1.191489 TGAGGGAGGTCATCAACGCA 61.191 55.000 0.00 0.00 0.00 5.24
145 146 0.741221 GTGAGGGAGGTCATCAACGC 60.741 60.000 0.00 0.00 0.00 4.84
146 147 0.108138 GGTGAGGGAGGTCATCAACG 60.108 60.000 0.00 0.00 0.00 4.10
147 148 0.984230 TGGTGAGGGAGGTCATCAAC 59.016 55.000 0.00 0.00 34.53 3.18
148 149 0.984230 GTGGTGAGGGAGGTCATCAA 59.016 55.000 0.00 0.00 39.30 2.57
149 150 0.909610 GGTGGTGAGGGAGGTCATCA 60.910 60.000 0.00 0.00 35.10 3.07
150 151 0.909610 TGGTGGTGAGGGAGGTCATC 60.910 60.000 0.00 0.00 0.00 2.92
151 152 0.475632 TTGGTGGTGAGGGAGGTCAT 60.476 55.000 0.00 0.00 0.00 3.06
152 153 1.074090 TTGGTGGTGAGGGAGGTCA 60.074 57.895 0.00 0.00 0.00 4.02
153 154 1.375326 GTTGGTGGTGAGGGAGGTC 59.625 63.158 0.00 0.00 0.00 3.85
154 155 2.516888 CGTTGGTGGTGAGGGAGGT 61.517 63.158 0.00 0.00 0.00 3.85
155 156 2.347490 CGTTGGTGGTGAGGGAGG 59.653 66.667 0.00 0.00 0.00 4.30
156 157 2.347490 CCGTTGGTGGTGAGGGAG 59.653 66.667 0.00 0.00 0.00 4.30
157 158 3.948719 GCCGTTGGTGGTGAGGGA 61.949 66.667 0.00 0.00 0.00 4.20
160 161 4.308458 TCGGCCGTTGGTGGTGAG 62.308 66.667 27.15 0.00 0.00 3.51
161 162 4.308458 CTCGGCCGTTGGTGGTGA 62.308 66.667 27.15 0.17 0.00 4.02
206 207 4.736896 AGTTCTTCCGCCGCCGTC 62.737 66.667 0.00 0.00 0.00 4.79
207 208 4.736896 GAGTTCTTCCGCCGCCGT 62.737 66.667 0.00 0.00 0.00 5.68
208 209 4.436998 AGAGTTCTTCCGCCGCCG 62.437 66.667 0.00 0.00 0.00 6.46
209 210 2.509561 GAGAGTTCTTCCGCCGCC 60.510 66.667 0.00 0.00 0.00 6.13
210 211 2.509561 GGAGAGTTCTTCCGCCGC 60.510 66.667 0.00 0.00 0.00 6.53
211 212 1.153745 CAGGAGAGTTCTTCCGCCG 60.154 63.158 0.00 0.00 0.00 6.46
212 213 1.219393 CCAGGAGAGTTCTTCCGCC 59.781 63.158 0.00 0.00 0.00 6.13
213 214 1.448717 GCCAGGAGAGTTCTTCCGC 60.449 63.158 0.00 0.00 0.00 5.54
214 215 1.153745 CGCCAGGAGAGTTCTTCCG 60.154 63.158 0.00 0.00 0.00 4.30
215 216 1.219393 CCGCCAGGAGAGTTCTTCC 59.781 63.158 0.00 0.00 41.02 3.46
216 217 1.448717 GCCGCCAGGAGAGTTCTTC 60.449 63.158 0.00 0.00 41.02 2.87
217 218 2.665603 GCCGCCAGGAGAGTTCTT 59.334 61.111 0.00 0.00 41.02 2.52
218 219 3.764466 CGCCGCCAGGAGAGTTCT 61.764 66.667 0.00 0.00 39.96 3.01
219 220 4.821589 CCGCCGCCAGGAGAGTTC 62.822 72.222 0.00 0.00 39.96 3.01
244 245 0.995728 GAAGAAAGAAGGCGAGCTCG 59.004 55.000 31.37 31.37 43.27 5.03
245 246 0.995728 CGAAGAAAGAAGGCGAGCTC 59.004 55.000 2.73 2.73 0.00 4.09
246 247 0.390472 CCGAAGAAAGAAGGCGAGCT 60.390 55.000 0.00 0.00 0.00 4.09
247 248 1.362406 CCCGAAGAAAGAAGGCGAGC 61.362 60.000 0.00 0.00 0.00 5.03
248 249 0.037232 ACCCGAAGAAAGAAGGCGAG 60.037 55.000 0.00 0.00 0.00 5.03
249 250 0.320421 CACCCGAAGAAAGAAGGCGA 60.320 55.000 0.00 0.00 0.00 5.54
250 251 0.320421 TCACCCGAAGAAAGAAGGCG 60.320 55.000 0.00 0.00 0.00 5.52
251 252 1.892209 TTCACCCGAAGAAAGAAGGC 58.108 50.000 0.00 0.00 0.00 4.35
257 258 6.327154 GTTTTCTTTCTTTCACCCGAAGAAA 58.673 36.000 10.50 10.50 45.70 2.52
258 259 5.448089 CGTTTTCTTTCTTTCACCCGAAGAA 60.448 40.000 0.00 0.00 40.36 2.52
259 260 4.034742 CGTTTTCTTTCTTTCACCCGAAGA 59.965 41.667 0.00 0.00 31.28 2.87
260 261 4.279659 CGTTTTCTTTCTTTCACCCGAAG 58.720 43.478 0.00 0.00 31.28 3.79
261 262 3.065648 CCGTTTTCTTTCTTTCACCCGAA 59.934 43.478 0.00 0.00 0.00 4.30
262 263 2.614983 CCGTTTTCTTTCTTTCACCCGA 59.385 45.455 0.00 0.00 0.00 5.14
263 264 2.857104 GCCGTTTTCTTTCTTTCACCCG 60.857 50.000 0.00 0.00 0.00 5.28
264 265 2.361119 AGCCGTTTTCTTTCTTTCACCC 59.639 45.455 0.00 0.00 0.00 4.61
265 266 3.710326 AGCCGTTTTCTTTCTTTCACC 57.290 42.857 0.00 0.00 0.00 4.02
266 267 7.694388 ATTTAAGCCGTTTTCTTTCTTTCAC 57.306 32.000 0.00 0.00 0.00 3.18
267 268 8.626526 ACTATTTAAGCCGTTTTCTTTCTTTCA 58.373 29.630 0.00 0.00 0.00 2.69
269 270 9.888878 GTACTATTTAAGCCGTTTTCTTTCTTT 57.111 29.630 0.00 0.00 0.00 2.52
270 271 9.281371 AGTACTATTTAAGCCGTTTTCTTTCTT 57.719 29.630 0.00 0.00 0.00 2.52
271 272 8.843885 AGTACTATTTAAGCCGTTTTCTTTCT 57.156 30.769 0.00 0.00 0.00 2.52
272 273 9.888878 AAAGTACTATTTAAGCCGTTTTCTTTC 57.111 29.630 0.00 0.00 0.00 2.62
279 280 9.550406 TGCATATAAAGTACTATTTAAGCCGTT 57.450 29.630 0.00 0.00 0.00 4.44
280 281 9.550406 TTGCATATAAAGTACTATTTAAGCCGT 57.450 29.630 0.00 0.00 0.00 5.68
291 292 8.759782 ACTTGTCCTACTTGCATATAAAGTACT 58.240 33.333 6.22 0.00 38.73 2.73
292 293 8.943909 ACTTGTCCTACTTGCATATAAAGTAC 57.056 34.615 6.22 0.00 38.73 2.73
293 294 8.978472 AGACTTGTCCTACTTGCATATAAAGTA 58.022 33.333 8.94 8.94 38.73 2.24
294 295 7.852263 AGACTTGTCCTACTTGCATATAAAGT 58.148 34.615 7.81 7.81 40.82 2.66
295 296 7.981789 TGAGACTTGTCCTACTTGCATATAAAG 59.018 37.037 0.00 0.00 0.00 1.85
296 297 7.764443 GTGAGACTTGTCCTACTTGCATATAAA 59.236 37.037 0.00 0.00 0.00 1.40
297 298 7.265673 GTGAGACTTGTCCTACTTGCATATAA 58.734 38.462 0.00 0.00 0.00 0.98
298 299 6.183360 GGTGAGACTTGTCCTACTTGCATATA 60.183 42.308 0.00 0.00 0.00 0.86
299 300 5.395768 GGTGAGACTTGTCCTACTTGCATAT 60.396 44.000 0.00 0.00 0.00 1.78
300 301 4.081642 GGTGAGACTTGTCCTACTTGCATA 60.082 45.833 0.00 0.00 0.00 3.14
301 302 3.307059 GGTGAGACTTGTCCTACTTGCAT 60.307 47.826 0.00 0.00 0.00 3.96
302 303 2.037251 GGTGAGACTTGTCCTACTTGCA 59.963 50.000 0.00 0.00 0.00 4.08
303 304 2.689646 GGTGAGACTTGTCCTACTTGC 58.310 52.381 0.00 0.00 0.00 4.01
304 305 2.296471 ACGGTGAGACTTGTCCTACTTG 59.704 50.000 0.00 0.00 0.00 3.16
305 306 2.595238 ACGGTGAGACTTGTCCTACTT 58.405 47.619 0.00 0.00 0.00 2.24
306 307 2.289592 ACGGTGAGACTTGTCCTACT 57.710 50.000 0.00 0.00 0.00 2.57
307 308 3.382048 AAACGGTGAGACTTGTCCTAC 57.618 47.619 0.00 0.00 0.00 3.18
308 309 3.890756 TGTAAACGGTGAGACTTGTCCTA 59.109 43.478 0.00 0.00 0.00 2.94
309 310 2.696707 TGTAAACGGTGAGACTTGTCCT 59.303 45.455 0.00 0.00 0.00 3.85
310 311 3.102052 TGTAAACGGTGAGACTTGTCC 57.898 47.619 0.00 0.00 0.00 4.02
311 312 4.510340 ACATTGTAAACGGTGAGACTTGTC 59.490 41.667 0.00 0.00 0.00 3.18
312 313 4.448210 ACATTGTAAACGGTGAGACTTGT 58.552 39.130 0.00 0.00 0.00 3.16
313 314 6.533819 TTACATTGTAAACGGTGAGACTTG 57.466 37.500 6.79 0.00 0.00 3.16
314 315 7.442969 TCATTTACATTGTAAACGGTGAGACTT 59.557 33.333 21.07 2.36 0.00 3.01
315 316 6.932400 TCATTTACATTGTAAACGGTGAGACT 59.068 34.615 21.07 3.00 0.00 3.24
316 317 7.124347 TCATTTACATTGTAAACGGTGAGAC 57.876 36.000 21.07 0.00 0.00 3.36
317 318 7.442969 ACTTCATTTACATTGTAAACGGTGAGA 59.557 33.333 21.07 11.19 0.00 3.27
318 319 7.581476 ACTTCATTTACATTGTAAACGGTGAG 58.419 34.615 21.07 18.02 0.00 3.51
319 320 7.499321 ACTTCATTTACATTGTAAACGGTGA 57.501 32.000 21.07 17.81 0.00 4.02
320 321 9.666626 TTTACTTCATTTACATTGTAAACGGTG 57.333 29.630 21.07 16.17 0.00 4.94
347 348 7.555554 TGACACCATTCCAAATTTCATGTTTTT 59.444 29.630 0.00 0.00 0.00 1.94
348 349 7.052873 TGACACCATTCCAAATTTCATGTTTT 58.947 30.769 0.00 0.00 0.00 2.43
349 350 6.590068 TGACACCATTCCAAATTTCATGTTT 58.410 32.000 0.00 0.00 0.00 2.83
350 351 6.172136 TGACACCATTCCAAATTTCATGTT 57.828 33.333 0.00 0.00 0.00 2.71
351 352 5.804944 TGACACCATTCCAAATTTCATGT 57.195 34.783 0.00 0.00 0.00 3.21
352 353 6.399743 TCATGACACCATTCCAAATTTCATG 58.600 36.000 0.00 0.00 40.20 3.07
353 354 6.608539 TCATGACACCATTCCAAATTTCAT 57.391 33.333 0.00 0.00 0.00 2.57
354 355 6.608539 ATCATGACACCATTCCAAATTTCA 57.391 33.333 0.00 0.00 0.00 2.69
355 356 8.469200 TCTTATCATGACACCATTCCAAATTTC 58.531 33.333 0.00 0.00 0.00 2.17
356 357 8.365060 TCTTATCATGACACCATTCCAAATTT 57.635 30.769 0.00 0.00 0.00 1.82
357 358 7.959658 TCTTATCATGACACCATTCCAAATT 57.040 32.000 0.00 0.00 0.00 1.82
358 359 8.003044 AGATCTTATCATGACACCATTCCAAAT 58.997 33.333 0.00 0.00 0.00 2.32
359 360 7.348815 AGATCTTATCATGACACCATTCCAAA 58.651 34.615 0.00 0.00 0.00 3.28
360 361 6.903516 AGATCTTATCATGACACCATTCCAA 58.096 36.000 0.00 0.00 0.00 3.53
361 362 6.100134 TGAGATCTTATCATGACACCATTCCA 59.900 38.462 0.00 0.00 0.00 3.53
362 363 6.528321 TGAGATCTTATCATGACACCATTCC 58.472 40.000 0.00 0.00 0.00 3.01
363 364 7.215789 ACTGAGATCTTATCATGACACCATTC 58.784 38.462 0.00 0.00 0.00 2.67
364 365 7.134362 ACTGAGATCTTATCATGACACCATT 57.866 36.000 0.00 0.00 0.00 3.16
365 366 6.744175 ACTGAGATCTTATCATGACACCAT 57.256 37.500 0.00 0.00 0.00 3.55
366 367 7.846101 ATACTGAGATCTTATCATGACACCA 57.154 36.000 0.00 0.00 0.00 4.17
367 368 8.584157 AGAATACTGAGATCTTATCATGACACC 58.416 37.037 0.00 0.00 0.00 4.16
370 371 9.767684 CGTAGAATACTGAGATCTTATCATGAC 57.232 37.037 0.00 0.00 40.12 3.06
371 372 9.508642 ACGTAGAATACTGAGATCTTATCATGA 57.491 33.333 0.00 0.00 40.12 3.07
384 385 9.529325 CCATCTCATTTTTACGTAGAATACTGA 57.471 33.333 0.00 3.51 40.12 3.41
385 386 9.314321 ACCATCTCATTTTTACGTAGAATACTG 57.686 33.333 0.00 0.00 40.12 2.74
386 387 9.886132 AACCATCTCATTTTTACGTAGAATACT 57.114 29.630 0.00 0.00 40.12 2.12
420 421 6.100404 TCTAAGCAAGGCACATGAATTTTT 57.900 33.333 0.00 0.00 0.00 1.94
421 422 5.726980 TCTAAGCAAGGCACATGAATTTT 57.273 34.783 0.00 0.00 0.00 1.82
422 423 5.726980 TTCTAAGCAAGGCACATGAATTT 57.273 34.783 0.00 0.00 0.00 1.82
423 424 5.726980 TTTCTAAGCAAGGCACATGAATT 57.273 34.783 0.00 0.00 0.00 2.17
424 425 5.419788 TGATTTCTAAGCAAGGCACATGAAT 59.580 36.000 0.00 0.00 0.00 2.57
425 426 4.766373 TGATTTCTAAGCAAGGCACATGAA 59.234 37.500 0.00 0.00 0.00 2.57
426 427 4.334552 TGATTTCTAAGCAAGGCACATGA 58.665 39.130 0.00 0.00 0.00 3.07
427 428 4.439700 CCTGATTTCTAAGCAAGGCACATG 60.440 45.833 0.00 0.00 0.00 3.21
428 429 3.698040 CCTGATTTCTAAGCAAGGCACAT 59.302 43.478 0.00 0.00 0.00 3.21
429 430 3.084039 CCTGATTTCTAAGCAAGGCACA 58.916 45.455 0.00 0.00 0.00 4.57
430 431 2.159324 GCCTGATTTCTAAGCAAGGCAC 60.159 50.000 6.63 0.00 39.35 5.01
431 432 2.094675 GCCTGATTTCTAAGCAAGGCA 58.905 47.619 6.63 0.00 39.35 4.75
432 433 1.406898 GGCCTGATTTCTAAGCAAGGC 59.593 52.381 0.00 2.87 39.06 4.35
433 434 1.672881 CGGCCTGATTTCTAAGCAAGG 59.327 52.381 0.00 0.00 0.00 3.61
434 435 2.359900 ACGGCCTGATTTCTAAGCAAG 58.640 47.619 0.00 0.00 0.00 4.01
435 436 2.489938 ACGGCCTGATTTCTAAGCAA 57.510 45.000 0.00 0.00 0.00 3.91
436 437 2.290008 TGAACGGCCTGATTTCTAAGCA 60.290 45.455 0.00 0.00 0.00 3.91
437 438 2.356135 TGAACGGCCTGATTTCTAAGC 58.644 47.619 0.00 0.00 0.00 3.09
438 439 3.561725 GGATGAACGGCCTGATTTCTAAG 59.438 47.826 0.00 0.00 0.00 2.18
439 440 3.054728 TGGATGAACGGCCTGATTTCTAA 60.055 43.478 0.00 0.00 0.00 2.10
440 441 2.503765 TGGATGAACGGCCTGATTTCTA 59.496 45.455 0.00 0.00 0.00 2.10
441 442 1.281867 TGGATGAACGGCCTGATTTCT 59.718 47.619 0.00 0.00 0.00 2.52
442 443 1.750193 TGGATGAACGGCCTGATTTC 58.250 50.000 0.00 0.00 0.00 2.17
443 444 2.442236 ATGGATGAACGGCCTGATTT 57.558 45.000 0.00 0.00 0.00 2.17
444 445 2.806745 CGTATGGATGAACGGCCTGATT 60.807 50.000 0.00 0.00 35.51 2.57
445 446 1.270305 CGTATGGATGAACGGCCTGAT 60.270 52.381 0.00 0.00 35.51 2.90
446 447 0.104120 CGTATGGATGAACGGCCTGA 59.896 55.000 0.00 0.00 35.51 3.86
447 448 0.179084 ACGTATGGATGAACGGCCTG 60.179 55.000 0.00 0.00 43.25 4.85
448 449 0.539986 AACGTATGGATGAACGGCCT 59.460 50.000 0.00 0.00 43.25 5.19
449 450 1.063469 CAAACGTATGGATGAACGGCC 59.937 52.381 0.00 0.00 43.25 6.13
450 451 1.063469 CCAAACGTATGGATGAACGGC 59.937 52.381 0.00 0.00 43.54 5.68
451 452 1.063469 GCCAAACGTATGGATGAACGG 59.937 52.381 0.00 0.00 43.54 4.44
452 453 1.735018 TGCCAAACGTATGGATGAACG 59.265 47.619 0.00 0.00 43.54 3.95
453 454 3.694734 CATGCCAAACGTATGGATGAAC 58.305 45.455 7.35 0.00 43.54 3.18
460 461 3.442273 ACCTAAACCATGCCAAACGTATG 59.558 43.478 0.00 0.00 34.56 2.39
461 462 3.692690 ACCTAAACCATGCCAAACGTAT 58.307 40.909 0.00 0.00 0.00 3.06
462 463 3.143211 ACCTAAACCATGCCAAACGTA 57.857 42.857 0.00 0.00 0.00 3.57
463 464 1.989706 ACCTAAACCATGCCAAACGT 58.010 45.000 0.00 0.00 0.00 3.99
464 465 2.352323 GGAACCTAAACCATGCCAAACG 60.352 50.000 0.00 0.00 0.00 3.60
465 466 2.897326 AGGAACCTAAACCATGCCAAAC 59.103 45.455 0.00 0.00 0.00 2.93
466 467 2.896685 CAGGAACCTAAACCATGCCAAA 59.103 45.455 0.00 0.00 0.00 3.28
467 468 2.524306 CAGGAACCTAAACCATGCCAA 58.476 47.619 0.00 0.00 0.00 4.52
468 469 1.272425 CCAGGAACCTAAACCATGCCA 60.272 52.381 0.00 0.00 0.00 4.92
469 470 1.474330 CCAGGAACCTAAACCATGCC 58.526 55.000 0.00 0.00 0.00 4.40
470 471 0.817654 GCCAGGAACCTAAACCATGC 59.182 55.000 0.00 0.00 0.00 4.06
471 472 2.214376 TGCCAGGAACCTAAACCATG 57.786 50.000 0.00 0.00 0.00 3.66
472 473 2.624029 CCATGCCAGGAACCTAAACCAT 60.624 50.000 0.00 0.00 0.00 3.55
473 474 1.272425 CCATGCCAGGAACCTAAACCA 60.272 52.381 0.00 0.00 0.00 3.67
474 475 1.272480 ACCATGCCAGGAACCTAAACC 60.272 52.381 0.00 0.00 0.00 3.27
475 476 2.215942 ACCATGCCAGGAACCTAAAC 57.784 50.000 0.00 0.00 0.00 2.01
476 477 2.990740 AACCATGCCAGGAACCTAAA 57.009 45.000 0.00 0.00 0.00 1.85
477 478 2.990740 AAACCATGCCAGGAACCTAA 57.009 45.000 0.00 0.00 0.00 2.69
478 479 2.241176 CCTAAACCATGCCAGGAACCTA 59.759 50.000 0.00 0.00 0.00 3.08
479 480 1.005924 CCTAAACCATGCCAGGAACCT 59.994 52.381 0.00 0.00 0.00 3.50
480 481 1.272480 ACCTAAACCATGCCAGGAACC 60.272 52.381 0.00 0.00 32.25 3.62
481 482 2.215942 ACCTAAACCATGCCAGGAAC 57.784 50.000 0.00 0.00 32.25 3.62
482 483 2.556559 GGAACCTAAACCATGCCAGGAA 60.557 50.000 0.00 0.00 32.25 3.36
483 484 1.005450 GGAACCTAAACCATGCCAGGA 59.995 52.381 0.00 0.00 32.25 3.86
484 485 1.474330 GGAACCTAAACCATGCCAGG 58.526 55.000 0.00 0.00 0.00 4.45
485 486 1.094785 CGGAACCTAAACCATGCCAG 58.905 55.000 0.00 0.00 0.00 4.85
486 487 0.322997 CCGGAACCTAAACCATGCCA 60.323 55.000 0.00 0.00 0.00 4.92
487 488 1.035385 CCCGGAACCTAAACCATGCC 61.035 60.000 0.73 0.00 0.00 4.40
488 489 1.663379 GCCCGGAACCTAAACCATGC 61.663 60.000 0.73 0.00 0.00 4.06
489 490 0.034477 AGCCCGGAACCTAAACCATG 60.034 55.000 0.73 0.00 0.00 3.66
490 491 1.587066 TAGCCCGGAACCTAAACCAT 58.413 50.000 0.73 0.00 0.00 3.55
491 492 1.587066 ATAGCCCGGAACCTAAACCA 58.413 50.000 0.73 0.00 0.00 3.67
492 493 2.967887 TCTATAGCCCGGAACCTAAACC 59.032 50.000 0.73 0.00 0.00 3.27
493 494 4.566987 CATCTATAGCCCGGAACCTAAAC 58.433 47.826 0.73 0.00 0.00 2.01
494 495 3.007614 GCATCTATAGCCCGGAACCTAAA 59.992 47.826 0.73 0.00 0.00 1.85
495 496 2.565834 GCATCTATAGCCCGGAACCTAA 59.434 50.000 0.73 0.00 0.00 2.69
496 497 2.176889 GCATCTATAGCCCGGAACCTA 58.823 52.381 0.73 0.28 0.00 3.08
497 498 0.977395 GCATCTATAGCCCGGAACCT 59.023 55.000 0.73 0.00 0.00 3.50
498 499 0.977395 AGCATCTATAGCCCGGAACC 59.023 55.000 0.73 0.00 0.00 3.62
499 500 2.371910 GAGCATCTATAGCCCGGAAC 57.628 55.000 0.73 0.00 0.00 3.62
510 511 9.659742 CGAATACTCGCATCGTTAGAGCATCTA 62.660 44.444 0.00 0.00 40.75 1.98
511 512 8.946240 CGAATACTCGCATCGTTAGAGCATCT 62.946 46.154 0.00 0.00 43.73 2.90
512 513 2.126914 ACTCGCATCGTTAGAGCATC 57.873 50.000 0.00 0.00 35.56 3.91
513 514 3.924918 ATACTCGCATCGTTAGAGCAT 57.075 42.857 0.00 0.00 35.56 3.79
514 515 3.629058 GAATACTCGCATCGTTAGAGCA 58.371 45.455 0.00 0.00 35.56 4.26
515 516 2.652642 CGAATACTCGCATCGTTAGAGC 59.347 50.000 0.00 0.00 38.45 4.09
536 537 4.603146 CGAATACTCGCATCGTTATTTTGC 59.397 41.667 0.00 0.00 38.45 3.68
574 575 8.141268 TCAAAACATTATCCTCCAACTGAAAAC 58.859 33.333 0.00 0.00 0.00 2.43
575 576 8.141268 GTCAAAACATTATCCTCCAACTGAAAA 58.859 33.333 0.00 0.00 0.00 2.29
576 577 7.286546 TGTCAAAACATTATCCTCCAACTGAAA 59.713 33.333 0.00 0.00 0.00 2.69
601 602 2.021457 ACAGGTCCGGTTTTGTCTTTG 58.979 47.619 0.00 0.00 0.00 2.77
631 632 2.418976 GTCTTTGTCTGCGGGTATTTCC 59.581 50.000 0.00 0.00 0.00 3.13
637 647 1.227853 GGTGTCTTTGTCTGCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
648 658 1.447317 CTGCTTGTTGCCGGTGTCTT 61.447 55.000 1.90 0.00 42.00 3.01
660 670 2.227388 GCAGCTTTGTGTATCTGCTTGT 59.773 45.455 5.89 0.00 46.00 3.16
670 680 3.884774 TCGGGGGCAGCTTTGTGT 61.885 61.111 0.00 0.00 0.00 3.72
674 684 4.394712 CGAGTCGGGGGCAGCTTT 62.395 66.667 4.10 0.00 0.00 3.51
843 857 1.271488 TGGGTATTTGTTGGGTCCGTC 60.271 52.381 0.00 0.00 0.00 4.79
932 956 1.075600 GGGGTGAGGAGAGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
933 957 1.862138 TGGGGTGAGGAGAGGAGGA 60.862 63.158 0.00 0.00 0.00 3.71
934 958 1.687493 GTGGGGTGAGGAGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
1269 1296 2.330372 CCGTTCCTCCTCGTCGTCA 61.330 63.158 0.00 0.00 0.00 4.35
1410 1437 4.550076 AGGATCTCAAAGTGAAGACAGG 57.450 45.455 0.00 0.00 0.00 4.00
1491 1518 6.607198 CACAAATTCTACCCCTAATTCACCAT 59.393 38.462 0.00 0.00 0.00 3.55
1501 1528 2.644798 AGCACTCACAAATTCTACCCCT 59.355 45.455 0.00 0.00 0.00 4.79
1570 1597 0.537143 GTGTGCCACAGACCAATCCA 60.537 55.000 0.00 0.00 34.08 3.41
1587 1614 2.119801 ATTAGAAGCTGGTGCCAGTG 57.880 50.000 18.32 0.00 45.24 3.66
1595 1622 6.763135 TGTAGCATGTTCTAATTAGAAGCTGG 59.237 38.462 31.29 21.25 42.48 4.85
1797 1824 2.882137 TCCATCCCAACTCGAAAAACAC 59.118 45.455 0.00 0.00 0.00 3.32
2031 2059 4.991056 GTGCACTCAGAATCAACACTAGAA 59.009 41.667 10.32 0.00 0.00 2.10
2052 2080 7.115236 CACATTTCAGTTCATTGTACCAATGTG 59.885 37.037 18.57 18.57 0.00 3.21
2152 2180 8.820153 AGAAAGAAGAAAAGATAGATGCCATT 57.180 30.769 0.00 0.00 0.00 3.16
2283 2313 4.569943 TCTTTCACAAGCTAGGATGTGTC 58.430 43.478 14.32 0.00 45.52 3.67
2300 2330 1.270550 CCATGCACCACTGGTTCTTTC 59.729 52.381 0.00 0.00 31.02 2.62
2364 2394 2.693074 ACCGGTGCAAACAAGAAAGAAT 59.307 40.909 6.12 0.00 0.00 2.40
2380 2410 2.493675 CCATAGATCGATGATGACCGGT 59.506 50.000 6.92 6.92 0.00 5.28
2384 2414 5.976534 GCTATCACCATAGATCGATGATGAC 59.023 44.000 14.42 0.00 31.97 3.06
2466 2496 6.152831 GGATAAAAGCTCCCAACAAGTAACAT 59.847 38.462 0.00 0.00 0.00 2.71
2495 2553 4.271291 GGAGAACTGACTGTCTTTGTGTTC 59.729 45.833 9.51 13.57 34.39 3.18
2539 2597 8.438676 ACACATACTAACCAGAATTAGATTGC 57.561 34.615 0.00 0.00 35.96 3.56
3064 3124 2.480416 CCCACTAGCTAGCAGAAAGACG 60.480 54.545 20.91 5.75 0.00 4.18
3207 3267 7.029563 GCAAGAAAAGTACTGTATGATTTGGG 58.970 38.462 0.00 0.00 0.00 4.12
3233 3293 2.159827 CGTTCGAAGGCAGCTTAAAGAC 60.160 50.000 4.73 0.00 0.00 3.01
3263 3330 2.360801 TCAAACCAAACAGCCACTAAGC 59.639 45.455 0.00 0.00 0.00 3.09
3269 3336 2.435372 AGTCTCAAACCAAACAGCCA 57.565 45.000 0.00 0.00 0.00 4.75
3312 3379 3.440872 TGGTCAAACTTGCTTAACGTTGT 59.559 39.130 11.99 0.00 0.00 3.32
3381 3458 1.456331 GGATGTGATTGGGGCCCTG 60.456 63.158 25.93 0.00 0.00 4.45
3473 3550 5.358442 TCTGCTACAAGTTTTTGCCAAACTA 59.642 36.000 10.65 0.00 39.36 2.24
3492 3569 0.325933 TAGCAATGCCACACTCTGCT 59.674 50.000 0.00 0.11 45.05 4.24
3496 3573 2.101700 GCCTAGCAATGCCACACTC 58.898 57.895 0.00 0.00 0.00 3.51
3506 3583 4.316025 AATTTGGTTCTAGGCCTAGCAA 57.684 40.909 31.76 25.72 33.32 3.91
3595 3672 6.650807 AGAGACAAGATCGAGCAATTAAACAA 59.349 34.615 2.38 0.00 0.00 2.83
3616 3693 4.883083 ACATGCTAAAGTTCGAACAGAGA 58.117 39.130 28.78 10.90 0.00 3.10
3641 3718 3.129988 GGAGCAACTGCAAAGCATTAGAT 59.870 43.478 4.22 0.00 45.16 1.98
4438 4553 4.329545 GGAACCGGAGCAGGCACA 62.330 66.667 9.46 0.00 33.69 4.57
4495 4611 6.709145 ATAGTATTAGTAGTCAGACTCGCG 57.291 41.667 6.27 0.00 0.00 5.87
4614 4745 6.206243 AGACACAAAGAATTCTGGACTTCATG 59.794 38.462 9.17 3.32 0.00 3.07
4653 4784 8.547967 TCAACCATTCTGTTCTGAGTATTTAC 57.452 34.615 0.00 0.00 0.00 2.01
4708 4839 4.082136 GTGAGATCTTAGACAAGGGAACGT 60.082 45.833 0.00 0.00 32.22 3.99
4751 4882 1.478137 CTATTGGCGTCGTGCTAGAC 58.522 55.000 0.00 2.66 45.43 2.59
4799 4930 1.991430 CTGTGTGCGCGTGATAGTC 59.009 57.895 8.43 0.00 0.00 2.59
4833 4964 1.733912 CTGCTGCTCGTCATGCTTTTA 59.266 47.619 0.00 0.00 0.00 1.52
4900 5062 0.673333 CATGGTGTCACCGCTTAGCA 60.673 55.000 17.27 0.00 42.58 3.49
4923 5085 5.468072 GCAGTAGTCCTGATACATGGATTTG 59.532 44.000 0.00 0.00 44.49 2.32
5163 6504 1.957668 TCGACTGATGGCCATGAATG 58.042 50.000 26.56 12.33 0.00 2.67
5230 6571 6.186957 AGTATGCATGGTTTTCAAGATACCA 58.813 36.000 10.16 0.00 45.32 3.25
5239 6580 6.073819 GGTGTCAAAAAGTATGCATGGTTTTC 60.074 38.462 10.16 4.44 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.