Multiple sequence alignment - TraesCS3D01G155700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G155700 chr3D 100.000 5819 0 0 1 5819 123302142 123296324 0.000000e+00 10746.0
1 TraesCS3D01G155700 chr3D 77.021 235 23 15 142 370 597490214 597490423 7.970000e-19 106.0
2 TraesCS3D01G155700 chr3A 91.307 5211 281 69 369 5483 130841555 130836421 0.000000e+00 6955.0
3 TraesCS3D01G155700 chr3A 95.139 288 14 0 5532 5819 130836420 130836133 6.870000e-124 455.0
4 TraesCS3D01G155700 chr3B 93.364 2426 100 24 3104 5483 175760398 175757988 0.000000e+00 3531.0
5 TraesCS3D01G155700 chr3B 92.953 1490 64 7 436 1900 175762881 175761408 0.000000e+00 2132.0
6 TraesCS3D01G155700 chr3B 93.161 775 39 7 1986 2760 175761406 175760646 0.000000e+00 1125.0
7 TraesCS3D01G155700 chr3B 93.814 291 15 1 5532 5819 175757987 175757697 8.950000e-118 435.0
8 TraesCS3D01G155700 chr3B 93.411 258 16 1 2791 3048 175760652 175760396 1.180000e-101 381.0
9 TraesCS3D01G155700 chr3B 78.481 395 37 22 1 373 312177927 312177559 1.270000e-51 215.0
10 TraesCS3D01G155700 chr3B 100.000 38 0 0 369 406 175762922 175762885 2.910000e-08 71.3
11 TraesCS3D01G155700 chr1D 87.500 408 12 9 1 369 127496092 127495685 8.950000e-118 435.0
12 TraesCS3D01G155700 chr1D 97.753 89 1 1 1896 1984 337065276 337065189 1.010000e-32 152.0
13 TraesCS3D01G155700 chr6A 87.129 404 12 11 1 364 417487102 417487505 6.970000e-114 422.0
14 TraesCS3D01G155700 chr6A 86.098 410 15 8 1 369 163136774 163137182 2.530000e-108 403.0
15 TraesCS3D01G155700 chr5A 86.881 404 14 9 3 367 705097343 705096940 3.240000e-112 416.0
16 TraesCS3D01G155700 chr6D 86.396 419 10 6 1 373 27115921 27115504 1.170000e-111 414.0
17 TraesCS3D01G155700 chr6D 86.816 402 11 10 10 370 88772648 88773048 1.510000e-110 411.0
18 TraesCS3D01G155700 chr6D 86.098 410 15 6 1 369 128895837 128896245 2.530000e-108 403.0
19 TraesCS3D01G155700 chr5D 85.990 414 14 10 1 371 278143289 278143701 2.530000e-108 403.0
20 TraesCS3D01G155700 chr5D 84.691 405 20 10 1 364 421572462 421572865 3.310000e-97 366.0
21 TraesCS3D01G155700 chr5D 88.686 274 10 8 1 255 357055521 357055792 1.220000e-81 315.0
22 TraesCS3D01G155700 chr5D 80.914 372 36 23 3 363 546071520 546071867 1.610000e-65 261.0
23 TraesCS3D01G155700 chr5D 97.727 88 1 1 1898 1985 109535539 109535625 3.630000e-32 150.0
24 TraesCS3D01G155700 chr5D 97.727 88 1 1 1898 1985 112842925 112843011 3.630000e-32 150.0
25 TraesCS3D01G155700 chr5D 96.667 90 2 1 1898 1987 267846682 267846594 1.310000e-31 148.0
26 TraesCS3D01G155700 chr7A 86.139 404 16 8 1 364 91942171 91942574 3.270000e-107 399.0
27 TraesCS3D01G155700 chr1B 85.330 409 20 13 1 369 271890510 271890918 2.540000e-103 387.0
28 TraesCS3D01G155700 chr7B 85.366 410 17 12 1 369 721097939 721098346 9.150000e-103 385.0
29 TraesCS3D01G155700 chr7D 84.390 410 21 7 1 369 10091840 10092247 4.290000e-96 363.0
30 TraesCS3D01G155700 chr2A 78.186 408 42 21 1 364 54130122 54130526 3.530000e-52 217.0
31 TraesCS3D01G155700 chr2A 97.727 88 1 1 1899 1986 498099443 498099529 3.630000e-32 150.0
32 TraesCS3D01G155700 chr2D 95.652 92 3 1 1893 1984 15682894 15682984 4.700000e-31 147.0
33 TraesCS3D01G155700 chr5B 92.079 101 7 1 1892 1992 336243572 336243671 2.190000e-29 141.0
34 TraesCS3D01G155700 chr4D 89.091 110 10 2 1876 1984 26252083 26251975 1.020000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G155700 chr3D 123296324 123302142 5818 True 10746.000000 10746 100.0000 1 5819 1 chr3D.!!$R1 5818
1 TraesCS3D01G155700 chr3A 130836133 130841555 5422 True 3705.000000 6955 93.2230 369 5819 2 chr3A.!!$R1 5450
2 TraesCS3D01G155700 chr3B 175757697 175762922 5225 True 1279.216667 3531 94.4505 369 5819 6 chr3B.!!$R2 5450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.032130 TCGTCATAGGCGGCTTCATC 59.968 55.000 19.76 5.34 0.0 2.92 F
202 203 0.032678 CGTCATAGGCGGCTTCATCT 59.967 55.000 19.76 0.00 0.0 2.90 F
241 242 0.037232 CGGTTGAGGACTCCAGGTTC 60.037 60.000 0.00 0.00 0.0 3.62 F
319 320 0.095245 CTGGCGTGCGTTTGTATCTG 59.905 55.000 0.00 0.00 0.0 2.90 F
336 337 0.242825 CTGAGTCGGTCGGTGCTTTA 59.757 55.000 0.00 0.00 0.0 1.85 F
2223 2274 0.107654 ATGCTACGTTGCTTCCTCCC 60.108 55.000 22.01 0.00 0.0 4.30 F
3394 3468 0.604578 TGAAAAATGGCAGGCTGAGC 59.395 50.000 20.86 2.88 0.0 4.26 F
4115 4190 2.507484 CAGATTGCAGTTCTTGGTGGA 58.493 47.619 0.00 0.00 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2145 2196 0.037975 CAAGTGCTCCAAATGTGCCC 60.038 55.000 0.00 0.00 32.45 5.36 R
2198 2249 5.509163 GGAGGAAGCAACGTAGCATATAGAA 60.509 44.000 0.00 0.00 36.85 2.10 R
2205 2256 1.295423 GGGAGGAAGCAACGTAGCA 59.705 57.895 0.00 0.00 36.85 3.49 R
2212 2263 3.585289 TGTAACTGTATGGGAGGAAGCAA 59.415 43.478 0.00 0.00 0.00 3.91 R
2278 2329 5.744666 TTACTGACTGTGGCAAACTTTAC 57.255 39.130 0.00 0.00 0.00 2.01 R
4206 4286 0.106519 ATGCCGCTTGCTAGGGATTT 60.107 50.000 13.60 0.00 42.00 2.17 R
4207 4287 0.106519 AATGCCGCTTGCTAGGGATT 60.107 50.000 13.60 7.39 42.51 3.01 R
5148 5252 0.534203 TTGAGGTTTCCACGTGCTCC 60.534 55.000 10.91 9.04 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.265056 GTGAGTGTTGGCCGGGGT 62.265 66.667 2.18 0.00 0.00 4.95
19 20 4.263572 TGAGTGTTGGCCGGGGTG 62.264 66.667 2.18 0.00 0.00 4.61
20 21 3.948719 GAGTGTTGGCCGGGGTGA 61.949 66.667 2.18 0.00 0.00 4.02
21 22 3.485346 GAGTGTTGGCCGGGGTGAA 62.485 63.158 2.18 0.00 0.00 3.18
22 23 2.519780 GTGTTGGCCGGGGTGAAA 60.520 61.111 2.18 0.00 0.00 2.69
23 24 2.128507 GTGTTGGCCGGGGTGAAAA 61.129 57.895 2.18 0.00 0.00 2.29
24 25 2.128507 TGTTGGCCGGGGTGAAAAC 61.129 57.895 2.18 0.00 0.00 2.43
25 26 2.522193 TTGGCCGGGGTGAAAACC 60.522 61.111 2.18 0.00 0.00 3.27
26 27 3.076217 TTGGCCGGGGTGAAAACCT 62.076 57.895 2.18 0.00 0.00 3.50
27 28 2.989253 GGCCGGGGTGAAAACCTG 60.989 66.667 2.18 0.00 0.00 4.00
28 29 2.114411 GCCGGGGTGAAAACCTGA 59.886 61.111 2.18 0.00 36.43 3.86
29 30 1.304134 GCCGGGGTGAAAACCTGAT 60.304 57.895 2.18 0.00 36.43 2.90
30 31 1.313091 GCCGGGGTGAAAACCTGATC 61.313 60.000 2.18 0.00 36.43 2.92
31 32 0.328258 CCGGGGTGAAAACCTGATCT 59.672 55.000 0.00 0.00 36.43 2.75
32 33 1.557832 CCGGGGTGAAAACCTGATCTA 59.442 52.381 0.00 0.00 36.43 1.98
33 34 2.172717 CCGGGGTGAAAACCTGATCTAT 59.827 50.000 0.00 0.00 36.43 1.98
34 35 3.371595 CCGGGGTGAAAACCTGATCTATT 60.372 47.826 0.00 0.00 36.43 1.73
35 36 3.877508 CGGGGTGAAAACCTGATCTATTC 59.122 47.826 0.00 0.00 36.43 1.75
36 37 3.877508 GGGGTGAAAACCTGATCTATTCG 59.122 47.826 0.00 0.00 0.00 3.34
37 38 3.312697 GGGTGAAAACCTGATCTATTCGC 59.687 47.826 0.00 0.00 0.00 4.70
38 39 3.001330 GGTGAAAACCTGATCTATTCGCG 59.999 47.826 0.00 0.00 32.71 5.87
39 40 3.001330 GTGAAAACCTGATCTATTCGCGG 59.999 47.826 6.13 0.00 0.00 6.46
40 41 3.118920 TGAAAACCTGATCTATTCGCGGA 60.119 43.478 6.13 0.00 0.00 5.54
41 42 3.753294 AAACCTGATCTATTCGCGGAT 57.247 42.857 4.69 4.69 0.00 4.18
42 43 2.732412 ACCTGATCTATTCGCGGATG 57.268 50.000 11.02 0.00 0.00 3.51
43 44 1.273606 ACCTGATCTATTCGCGGATGG 59.726 52.381 11.02 7.43 0.00 3.51
44 45 1.546029 CCTGATCTATTCGCGGATGGA 59.454 52.381 16.41 16.41 0.00 3.41
45 46 2.600731 CTGATCTATTCGCGGATGGAC 58.399 52.381 16.42 10.45 0.00 4.02
46 47 1.272490 TGATCTATTCGCGGATGGACC 59.728 52.381 16.42 6.92 0.00 4.46
74 75 2.863658 CGAAGCTCGTTTCCTTCTTG 57.136 50.000 0.00 0.00 36.25 3.02
75 76 2.404215 CGAAGCTCGTTTCCTTCTTGA 58.596 47.619 0.00 0.00 36.25 3.02
76 77 2.800544 CGAAGCTCGTTTCCTTCTTGAA 59.199 45.455 0.00 0.00 36.25 2.69
77 78 3.120854 CGAAGCTCGTTTCCTTCTTGAAG 60.121 47.826 3.55 3.55 36.25 3.02
78 79 2.772287 AGCTCGTTTCCTTCTTGAAGG 58.228 47.619 20.21 20.21 41.35 3.46
79 80 1.197949 GCTCGTTTCCTTCTTGAAGGC 59.802 52.381 21.16 9.27 39.80 4.35
80 81 1.461127 CTCGTTTCCTTCTTGAAGGCG 59.539 52.381 21.16 18.49 39.80 5.52
81 82 1.202604 TCGTTTCCTTCTTGAAGGCGT 60.203 47.619 21.16 0.00 39.80 5.68
82 83 1.194772 CGTTTCCTTCTTGAAGGCGTC 59.805 52.381 21.16 13.16 39.80 5.19
83 84 1.194772 GTTTCCTTCTTGAAGGCGTCG 59.805 52.381 21.16 1.77 39.80 5.12
84 85 0.391597 TTCCTTCTTGAAGGCGTCGT 59.608 50.000 21.16 0.00 39.80 4.34
85 86 0.038526 TCCTTCTTGAAGGCGTCGTC 60.039 55.000 21.16 0.00 39.80 4.20
86 87 1.344942 CCTTCTTGAAGGCGTCGTCG 61.345 60.000 15.43 0.00 40.37 5.12
96 97 4.538283 CGTCGTCGCGGCTCTCAT 62.538 66.667 9.90 0.00 0.00 2.90
97 98 2.202623 GTCGTCGCGGCTCTCATT 60.203 61.111 9.90 0.00 0.00 2.57
98 99 2.202610 TCGTCGCGGCTCTCATTG 60.203 61.111 9.90 0.00 0.00 2.82
99 100 3.918220 CGTCGCGGCTCTCATTGC 61.918 66.667 9.90 0.00 0.00 3.56
100 101 3.567797 GTCGCGGCTCTCATTGCC 61.568 66.667 1.90 0.00 46.42 4.52
105 106 2.892425 GGCTCTCATTGCCCGTCG 60.892 66.667 0.00 0.00 44.32 5.12
106 107 2.125512 GCTCTCATTGCCCGTCGT 60.126 61.111 0.00 0.00 0.00 4.34
107 108 2.167861 GCTCTCATTGCCCGTCGTC 61.168 63.158 0.00 0.00 0.00 4.20
108 109 1.513158 CTCTCATTGCCCGTCGTCT 59.487 57.895 0.00 0.00 0.00 4.18
109 110 0.803768 CTCTCATTGCCCGTCGTCTG 60.804 60.000 0.00 0.00 0.00 3.51
110 111 1.215382 CTCATTGCCCGTCGTCTGA 59.785 57.895 0.00 0.00 0.00 3.27
111 112 0.179100 CTCATTGCCCGTCGTCTGAT 60.179 55.000 0.00 0.00 0.00 2.90
112 113 0.179111 TCATTGCCCGTCGTCTGATC 60.179 55.000 0.00 0.00 0.00 2.92
113 114 1.144057 ATTGCCCGTCGTCTGATCC 59.856 57.895 0.00 0.00 0.00 3.36
114 115 1.330655 ATTGCCCGTCGTCTGATCCT 61.331 55.000 0.00 0.00 0.00 3.24
115 116 1.945354 TTGCCCGTCGTCTGATCCTC 61.945 60.000 0.00 0.00 0.00 3.71
116 117 2.716244 CCCGTCGTCTGATCCTCG 59.284 66.667 0.00 0.00 0.00 4.63
117 118 2.716244 CCGTCGTCTGATCCTCGG 59.284 66.667 0.00 0.00 0.00 4.63
118 119 2.716244 CGTCGTCTGATCCTCGGG 59.284 66.667 0.00 0.00 0.00 5.14
119 120 2.113433 CGTCGTCTGATCCTCGGGT 61.113 63.158 0.00 0.00 0.00 5.28
120 121 1.728672 GTCGTCTGATCCTCGGGTC 59.271 63.158 0.00 0.00 0.00 4.46
121 122 1.818363 TCGTCTGATCCTCGGGTCG 60.818 63.158 0.00 0.00 0.00 4.79
122 123 2.835705 CGTCTGATCCTCGGGTCGG 61.836 68.421 0.00 0.00 0.00 4.79
123 124 2.123854 TCTGATCCTCGGGTCGGG 60.124 66.667 5.25 0.00 0.00 5.14
124 125 3.917760 CTGATCCTCGGGTCGGGC 61.918 72.222 0.00 0.00 0.00 6.13
147 148 4.111016 CGGCGCTCTGGTGTCGTA 62.111 66.667 7.64 0.00 44.64 3.43
148 149 2.260434 GGCGCTCTGGTGTCGTAA 59.740 61.111 7.64 0.00 0.00 3.18
149 150 2.092882 GGCGCTCTGGTGTCGTAAC 61.093 63.158 7.64 0.00 0.00 2.50
150 151 2.092882 GCGCTCTGGTGTCGTAACC 61.093 63.158 0.00 2.77 40.94 2.85
151 152 1.585006 CGCTCTGGTGTCGTAACCT 59.415 57.895 10.01 0.00 41.16 3.50
152 153 0.038526 CGCTCTGGTGTCGTAACCTT 60.039 55.000 10.01 0.00 41.16 3.50
153 154 1.604693 CGCTCTGGTGTCGTAACCTTT 60.605 52.381 10.01 0.00 41.16 3.11
154 155 2.067013 GCTCTGGTGTCGTAACCTTTC 58.933 52.381 10.01 0.00 41.16 2.62
155 156 2.288886 GCTCTGGTGTCGTAACCTTTCT 60.289 50.000 10.01 0.00 41.16 2.52
156 157 3.318017 CTCTGGTGTCGTAACCTTTCTG 58.682 50.000 10.01 0.00 41.16 3.02
157 158 2.960384 TCTGGTGTCGTAACCTTTCTGA 59.040 45.455 10.01 0.59 41.16 3.27
158 159 3.385433 TCTGGTGTCGTAACCTTTCTGAA 59.615 43.478 10.01 0.00 41.16 3.02
159 160 3.724374 TGGTGTCGTAACCTTTCTGAAG 58.276 45.455 10.01 0.00 41.16 3.02
166 167 3.804193 CCTTTCTGAAGGCGCCGC 61.804 66.667 23.20 18.21 45.59 6.53
179 180 3.818787 GCCGCCTTGGAGCACATG 61.819 66.667 0.00 0.00 42.00 3.21
180 181 3.136123 CCGCCTTGGAGCACATGG 61.136 66.667 0.00 8.44 44.95 3.66
181 182 2.360350 CGCCTTGGAGCACATGGT 60.360 61.111 12.73 0.00 44.22 3.55
182 183 1.973281 CGCCTTGGAGCACATGGTT 60.973 57.895 12.73 0.00 44.22 3.67
183 184 1.885871 GCCTTGGAGCACATGGTTC 59.114 57.895 12.73 0.00 44.22 3.62
184 185 1.926511 GCCTTGGAGCACATGGTTCG 61.927 60.000 12.73 0.00 44.22 3.95
185 186 0.606401 CCTTGGAGCACATGGTTCGT 60.606 55.000 0.00 0.00 39.07 3.85
186 187 0.798776 CTTGGAGCACATGGTTCGTC 59.201 55.000 0.00 0.00 0.00 4.20
187 188 0.107643 TTGGAGCACATGGTTCGTCA 59.892 50.000 0.00 0.00 0.00 4.35
188 189 0.324614 TGGAGCACATGGTTCGTCAT 59.675 50.000 0.00 0.00 0.00 3.06
189 190 1.552792 TGGAGCACATGGTTCGTCATA 59.447 47.619 0.00 0.00 0.00 2.15
190 191 2.205074 GGAGCACATGGTTCGTCATAG 58.795 52.381 0.00 0.00 0.00 2.23
191 192 2.205074 GAGCACATGGTTCGTCATAGG 58.795 52.381 0.00 0.00 0.00 2.57
192 193 0.657840 GCACATGGTTCGTCATAGGC 59.342 55.000 0.00 0.00 0.00 3.93
193 194 0.930310 CACATGGTTCGTCATAGGCG 59.070 55.000 0.00 0.00 0.00 5.52
194 195 0.179084 ACATGGTTCGTCATAGGCGG 60.179 55.000 0.00 0.00 0.00 6.13
195 196 1.227556 ATGGTTCGTCATAGGCGGC 60.228 57.895 0.00 0.00 0.00 6.53
196 197 1.686325 ATGGTTCGTCATAGGCGGCT 61.686 55.000 18.33 18.33 0.00 5.52
197 198 1.153429 GGTTCGTCATAGGCGGCTT 60.153 57.895 19.76 1.78 0.00 4.35
198 199 1.152383 GGTTCGTCATAGGCGGCTTC 61.152 60.000 19.76 4.97 0.00 3.86
199 200 0.459585 GTTCGTCATAGGCGGCTTCA 60.460 55.000 19.76 0.00 0.00 3.02
200 201 0.464036 TTCGTCATAGGCGGCTTCAT 59.536 50.000 19.76 1.67 0.00 2.57
201 202 0.032130 TCGTCATAGGCGGCTTCATC 59.968 55.000 19.76 5.34 0.00 2.92
202 203 0.032678 CGTCATAGGCGGCTTCATCT 59.967 55.000 19.76 0.00 0.00 2.90
203 204 1.789506 GTCATAGGCGGCTTCATCTC 58.210 55.000 19.76 0.00 0.00 2.75
204 205 1.342819 GTCATAGGCGGCTTCATCTCT 59.657 52.381 19.76 0.00 0.00 3.10
205 206 2.042464 TCATAGGCGGCTTCATCTCTT 58.958 47.619 19.76 0.00 0.00 2.85
206 207 2.036475 TCATAGGCGGCTTCATCTCTTC 59.964 50.000 19.76 0.00 0.00 2.87
207 208 0.385751 TAGGCGGCTTCATCTCTTCG 59.614 55.000 19.76 0.00 0.00 3.79
208 209 2.529619 GGCGGCTTCATCTCTTCGC 61.530 63.158 0.00 0.00 42.02 4.70
209 210 2.864931 GCGGCTTCATCTCTTCGCG 61.865 63.158 0.00 0.00 34.08 5.87
210 211 2.233654 CGGCTTCATCTCTTCGCGG 61.234 63.158 6.13 0.00 0.00 6.46
211 212 1.153549 GGCTTCATCTCTTCGCGGT 60.154 57.895 6.13 0.00 0.00 5.68
212 213 1.424493 GGCTTCATCTCTTCGCGGTG 61.424 60.000 6.13 0.00 0.00 4.94
213 214 1.424493 GCTTCATCTCTTCGCGGTGG 61.424 60.000 6.13 0.00 0.00 4.61
214 215 1.424493 CTTCATCTCTTCGCGGTGGC 61.424 60.000 6.13 0.00 0.00 5.01
215 216 2.125552 CATCTCTTCGCGGTGGCA 60.126 61.111 6.13 0.00 39.92 4.92
216 217 1.522355 CATCTCTTCGCGGTGGCAT 60.522 57.895 6.13 0.00 39.92 4.40
217 218 1.522355 ATCTCTTCGCGGTGGCATG 60.522 57.895 6.13 0.00 39.92 4.06
218 219 3.869272 CTCTTCGCGGTGGCATGC 61.869 66.667 9.90 9.90 39.92 4.06
219 220 4.393155 TCTTCGCGGTGGCATGCT 62.393 61.111 18.92 0.00 39.92 3.79
220 221 3.869272 CTTCGCGGTGGCATGCTC 61.869 66.667 18.92 11.03 39.92 4.26
221 222 4.695993 TTCGCGGTGGCATGCTCA 62.696 61.111 18.92 11.22 39.92 4.26
226 227 2.672996 GGTGGCATGCTCACGGTT 60.673 61.111 23.95 0.00 36.09 4.44
227 228 2.562912 GTGGCATGCTCACGGTTG 59.437 61.111 18.92 0.00 0.00 3.77
228 229 1.965930 GTGGCATGCTCACGGTTGA 60.966 57.895 18.92 0.00 0.00 3.18
236 237 2.351777 CTCACGGTTGAGGACTCCA 58.648 57.895 0.00 0.00 45.06 3.86
237 238 0.244994 CTCACGGTTGAGGACTCCAG 59.755 60.000 0.00 0.00 45.06 3.86
238 239 1.185618 TCACGGTTGAGGACTCCAGG 61.186 60.000 0.00 0.00 0.00 4.45
239 240 1.152312 ACGGTTGAGGACTCCAGGT 60.152 57.895 0.00 0.00 0.00 4.00
240 241 0.763223 ACGGTTGAGGACTCCAGGTT 60.763 55.000 0.00 0.00 0.00 3.50
241 242 0.037232 CGGTTGAGGACTCCAGGTTC 60.037 60.000 0.00 0.00 0.00 3.62
242 243 1.353091 GGTTGAGGACTCCAGGTTCT 58.647 55.000 0.00 0.00 36.25 3.01
247 248 2.252714 GAGGACTCCAGGTTCTCTTGT 58.747 52.381 0.00 0.00 44.98 3.16
248 249 3.432378 GAGGACTCCAGGTTCTCTTGTA 58.568 50.000 0.00 0.00 44.98 2.41
249 250 3.436243 AGGACTCCAGGTTCTCTTGTAG 58.564 50.000 0.00 0.00 0.00 2.74
250 251 3.166679 GGACTCCAGGTTCTCTTGTAGT 58.833 50.000 0.00 0.00 0.00 2.73
251 252 4.044317 AGGACTCCAGGTTCTCTTGTAGTA 59.956 45.833 0.00 0.00 0.00 1.82
252 253 4.158209 GGACTCCAGGTTCTCTTGTAGTAC 59.842 50.000 0.00 0.00 0.00 2.73
253 254 5.000570 ACTCCAGGTTCTCTTGTAGTACT 57.999 43.478 0.00 0.00 0.00 2.73
254 255 6.137104 ACTCCAGGTTCTCTTGTAGTACTA 57.863 41.667 0.00 0.00 0.00 1.82
255 256 6.181908 ACTCCAGGTTCTCTTGTAGTACTAG 58.818 44.000 1.87 5.49 0.00 2.57
256 257 5.507637 TCCAGGTTCTCTTGTAGTACTAGG 58.492 45.833 1.87 0.00 0.00 3.02
257 258 4.098196 CCAGGTTCTCTTGTAGTACTAGGC 59.902 50.000 1.87 0.00 0.00 3.93
258 259 4.951094 CAGGTTCTCTTGTAGTACTAGGCT 59.049 45.833 1.87 0.00 0.00 4.58
259 260 5.066764 CAGGTTCTCTTGTAGTACTAGGCTC 59.933 48.000 1.87 0.00 0.00 4.70
260 261 4.948621 GGTTCTCTTGTAGTACTAGGCTCA 59.051 45.833 1.87 0.00 0.00 4.26
261 262 5.066764 GGTTCTCTTGTAGTACTAGGCTCAG 59.933 48.000 1.87 2.75 0.00 3.35
262 263 4.200874 TCTCTTGTAGTACTAGGCTCAGC 58.799 47.826 1.87 0.00 0.00 4.26
263 264 2.943690 TCTTGTAGTACTAGGCTCAGCG 59.056 50.000 1.87 0.00 0.00 5.18
264 265 1.022735 TGTAGTACTAGGCTCAGCGC 58.977 55.000 1.87 0.00 38.13 5.92
273 274 2.563427 GCTCAGCGCCTTTGTTCC 59.437 61.111 2.29 0.00 0.00 3.62
274 275 1.968540 GCTCAGCGCCTTTGTTCCT 60.969 57.895 2.29 0.00 0.00 3.36
275 276 1.871772 CTCAGCGCCTTTGTTCCTG 59.128 57.895 2.29 0.00 0.00 3.86
276 277 2.192608 CTCAGCGCCTTTGTTCCTGC 62.193 60.000 2.29 0.00 0.00 4.85
277 278 2.985847 AGCGCCTTTGTTCCTGCC 60.986 61.111 2.29 0.00 0.00 4.85
278 279 2.985847 GCGCCTTTGTTCCTGCCT 60.986 61.111 0.00 0.00 0.00 4.75
279 280 2.564721 GCGCCTTTGTTCCTGCCTT 61.565 57.895 0.00 0.00 0.00 4.35
280 281 1.286880 CGCCTTTGTTCCTGCCTTG 59.713 57.895 0.00 0.00 0.00 3.61
281 282 1.667722 GCCTTTGTTCCTGCCTTGG 59.332 57.895 0.00 0.00 0.00 3.61
282 283 1.820010 GCCTTTGTTCCTGCCTTGGG 61.820 60.000 0.00 0.00 0.00 4.12
283 284 0.469892 CCTTTGTTCCTGCCTTGGGT 60.470 55.000 0.00 0.00 0.00 4.51
284 285 0.675633 CTTTGTTCCTGCCTTGGGTG 59.324 55.000 0.00 0.00 0.00 4.61
285 286 1.398958 TTTGTTCCTGCCTTGGGTGC 61.399 55.000 0.00 0.00 0.00 5.01
286 287 3.365265 GTTCCTGCCTTGGGTGCG 61.365 66.667 0.00 0.00 0.00 5.34
287 288 3.884774 TTCCTGCCTTGGGTGCGT 61.885 61.111 0.00 0.00 0.00 5.24
288 289 4.641645 TCCTGCCTTGGGTGCGTG 62.642 66.667 0.00 0.00 0.00 5.34
294 295 4.312231 CTTGGGTGCGTGCGTGTG 62.312 66.667 0.00 0.00 0.00 3.82
297 298 4.605967 GGGTGCGTGCGTGTGTTG 62.606 66.667 0.00 0.00 0.00 3.33
298 299 3.871574 GGTGCGTGCGTGTGTTGT 61.872 61.111 0.00 0.00 0.00 3.32
299 300 2.526993 GGTGCGTGCGTGTGTTGTA 61.527 57.895 0.00 0.00 0.00 2.41
300 301 1.367195 GTGCGTGCGTGTGTTGTAC 60.367 57.895 0.00 0.00 0.00 2.90
301 302 1.519676 TGCGTGCGTGTGTTGTACT 60.520 52.632 0.00 0.00 0.00 2.73
302 303 1.083657 GCGTGCGTGTGTTGTACTG 60.084 57.895 0.00 0.00 0.00 2.74
303 304 1.562691 CGTGCGTGTGTTGTACTGG 59.437 57.895 0.00 0.00 0.00 4.00
304 305 1.278637 GTGCGTGTGTTGTACTGGC 59.721 57.895 0.00 0.00 0.00 4.85
305 306 2.241190 TGCGTGTGTTGTACTGGCG 61.241 57.895 0.00 0.00 33.00 5.69
306 307 2.241880 GCGTGTGTTGTACTGGCGT 61.242 57.895 0.00 0.00 0.00 5.68
307 308 1.562691 CGTGTGTTGTACTGGCGTG 59.437 57.895 0.00 0.00 0.00 5.34
308 309 1.278637 GTGTGTTGTACTGGCGTGC 59.721 57.895 0.00 0.00 0.00 5.34
309 310 2.241190 TGTGTTGTACTGGCGTGCG 61.241 57.895 0.00 0.00 0.00 5.34
310 311 2.107343 TGTTGTACTGGCGTGCGT 59.893 55.556 0.00 0.00 0.00 5.24
311 312 1.521906 TGTTGTACTGGCGTGCGTT 60.522 52.632 0.00 0.00 0.00 4.84
312 313 1.090625 TGTTGTACTGGCGTGCGTTT 61.091 50.000 0.00 0.00 0.00 3.60
313 314 0.656205 GTTGTACTGGCGTGCGTTTG 60.656 55.000 0.00 0.00 0.00 2.93
314 315 1.090625 TTGTACTGGCGTGCGTTTGT 61.091 50.000 0.00 0.00 0.00 2.83
315 316 0.249363 TGTACTGGCGTGCGTTTGTA 60.249 50.000 0.00 0.00 0.00 2.41
316 317 1.073177 GTACTGGCGTGCGTTTGTAT 58.927 50.000 0.00 0.00 0.00 2.29
317 318 1.060122 GTACTGGCGTGCGTTTGTATC 59.940 52.381 0.00 0.00 0.00 2.24
318 319 0.320421 ACTGGCGTGCGTTTGTATCT 60.320 50.000 0.00 0.00 0.00 1.98
319 320 0.095245 CTGGCGTGCGTTTGTATCTG 59.905 55.000 0.00 0.00 0.00 2.90
320 321 0.319986 TGGCGTGCGTTTGTATCTGA 60.320 50.000 0.00 0.00 0.00 3.27
321 322 0.370273 GGCGTGCGTTTGTATCTGAG 59.630 55.000 0.00 0.00 0.00 3.35
322 323 1.068474 GCGTGCGTTTGTATCTGAGT 58.932 50.000 0.00 0.00 0.00 3.41
323 324 1.059264 GCGTGCGTTTGTATCTGAGTC 59.941 52.381 0.00 0.00 0.00 3.36
324 325 1.317611 CGTGCGTTTGTATCTGAGTCG 59.682 52.381 0.00 0.00 0.00 4.18
325 326 1.654105 GTGCGTTTGTATCTGAGTCGG 59.346 52.381 0.00 0.00 0.00 4.79
326 327 1.271379 TGCGTTTGTATCTGAGTCGGT 59.729 47.619 0.00 0.00 0.00 4.69
327 328 1.918609 GCGTTTGTATCTGAGTCGGTC 59.081 52.381 0.00 0.00 0.00 4.79
328 329 2.174764 CGTTTGTATCTGAGTCGGTCG 58.825 52.381 0.00 0.00 0.00 4.79
329 330 2.527100 GTTTGTATCTGAGTCGGTCGG 58.473 52.381 0.00 0.00 0.00 4.79
330 331 1.830279 TTGTATCTGAGTCGGTCGGT 58.170 50.000 0.00 0.00 32.66 4.69
331 332 1.092348 TGTATCTGAGTCGGTCGGTG 58.908 55.000 0.00 0.00 32.66 4.94
332 333 0.248539 GTATCTGAGTCGGTCGGTGC 60.249 60.000 0.00 0.00 32.66 5.01
333 334 0.393944 TATCTGAGTCGGTCGGTGCT 60.394 55.000 0.00 0.00 32.66 4.40
334 335 1.251527 ATCTGAGTCGGTCGGTGCTT 61.252 55.000 0.00 0.00 32.66 3.91
335 336 1.006102 CTGAGTCGGTCGGTGCTTT 60.006 57.895 0.00 0.00 0.00 3.51
336 337 0.242825 CTGAGTCGGTCGGTGCTTTA 59.757 55.000 0.00 0.00 0.00 1.85
337 338 0.892755 TGAGTCGGTCGGTGCTTTAT 59.107 50.000 0.00 0.00 0.00 1.40
338 339 2.093890 TGAGTCGGTCGGTGCTTTATA 58.906 47.619 0.00 0.00 0.00 0.98
339 340 2.691526 TGAGTCGGTCGGTGCTTTATAT 59.308 45.455 0.00 0.00 0.00 0.86
340 341 3.884693 TGAGTCGGTCGGTGCTTTATATA 59.115 43.478 0.00 0.00 0.00 0.86
341 342 4.521639 TGAGTCGGTCGGTGCTTTATATAT 59.478 41.667 0.00 0.00 0.00 0.86
342 343 5.706833 TGAGTCGGTCGGTGCTTTATATATA 59.293 40.000 0.00 0.00 0.00 0.86
343 344 6.207221 TGAGTCGGTCGGTGCTTTATATATAA 59.793 38.462 0.81 0.81 0.00 0.98
344 345 6.985117 AGTCGGTCGGTGCTTTATATATAAA 58.015 36.000 15.47 15.47 0.00 1.40
346 347 6.865205 GTCGGTCGGTGCTTTATATATAAAGT 59.135 38.462 31.63 0.00 46.78 2.66
347 348 6.864685 TCGGTCGGTGCTTTATATATAAAGTG 59.135 38.462 31.63 22.97 46.78 3.16
348 349 6.090358 CGGTCGGTGCTTTATATATAAAGTGG 59.910 42.308 31.63 22.37 46.78 4.00
349 350 6.370718 GGTCGGTGCTTTATATATAAAGTGGG 59.629 42.308 31.63 22.60 46.78 4.61
350 351 6.370718 GTCGGTGCTTTATATATAAAGTGGGG 59.629 42.308 31.63 22.84 46.78 4.96
351 352 5.123344 CGGTGCTTTATATATAAAGTGGGGC 59.877 44.000 31.63 23.33 46.78 5.80
352 353 5.123344 GGTGCTTTATATATAAAGTGGGGCG 59.877 44.000 31.63 15.94 46.78 6.13
353 354 5.935789 GTGCTTTATATATAAAGTGGGGCGA 59.064 40.000 31.63 15.13 46.78 5.54
354 355 6.428771 GTGCTTTATATATAAAGTGGGGCGAA 59.571 38.462 31.63 11.94 46.78 4.70
355 356 6.999272 TGCTTTATATATAAAGTGGGGCGAAA 59.001 34.615 31.63 11.43 46.78 3.46
356 357 7.174253 TGCTTTATATATAAAGTGGGGCGAAAG 59.826 37.037 31.63 15.33 46.78 2.62
509 522 1.262151 GAAGAAAACGCACGCCAGTAA 59.738 47.619 0.00 0.00 0.00 2.24
704 732 0.393132 ACGGATGCTCACTCTCTCGA 60.393 55.000 0.00 0.00 0.00 4.04
740 768 1.841663 CTGGCAAAACTGACGACCGG 61.842 60.000 0.00 0.00 0.00 5.28
868 903 0.394899 GGCAGCCATTTGAGCCTACT 60.395 55.000 6.55 0.00 43.70 2.57
1032 1067 1.674057 CTCCTGCTCTTCCACCGTT 59.326 57.895 0.00 0.00 0.00 4.44
1076 1114 2.203972 TACCGAACAAGGACGCCTCG 62.204 60.000 0.00 0.00 30.89 4.63
1195 1239 0.677288 CTGTACCGGAACACCTGACA 59.323 55.000 9.46 0.00 0.00 3.58
1203 1247 1.804748 GGAACACCTGACACGAAATCC 59.195 52.381 0.00 0.00 0.00 3.01
1300 1347 0.805614 TTTCTGACGAGAGAGAGGCG 59.194 55.000 0.00 0.00 0.00 5.52
1529 1577 2.353109 GCCTCTGCCCTTTCAATTTGAC 60.353 50.000 0.00 0.00 0.00 3.18
1535 1583 2.288152 GCCCTTTCAATTTGACGCTTCA 60.288 45.455 0.00 0.00 0.00 3.02
1556 1604 9.481340 GCTTCATCAGTTCCTTTTATTTCTTTT 57.519 29.630 0.00 0.00 0.00 2.27
1596 1644 1.258982 GCGTACATTTCTGATGCTCCG 59.741 52.381 0.00 0.00 0.00 4.63
1682 1731 2.302733 TGCGGTGAGTATATCCATGCAT 59.697 45.455 0.00 0.00 0.00 3.96
1713 1764 9.956640 TTTGATTATTTTGCCATGGTTAGAATT 57.043 25.926 14.67 3.03 0.00 2.17
1714 1765 8.945481 TGATTATTTTGCCATGGTTAGAATTG 57.055 30.769 14.67 0.00 0.00 2.32
1715 1766 8.756927 TGATTATTTTGCCATGGTTAGAATTGA 58.243 29.630 14.67 3.83 0.00 2.57
1716 1767 8.947055 ATTATTTTGCCATGGTTAGAATTGAC 57.053 30.769 14.67 0.00 0.00 3.18
1722 1773 3.629398 CCATGGTTAGAATTGACAGAGGC 59.371 47.826 2.57 0.00 0.00 4.70
1723 1774 2.972625 TGGTTAGAATTGACAGAGGCG 58.027 47.619 0.00 0.00 0.00 5.52
1724 1775 1.666189 GGTTAGAATTGACAGAGGCGC 59.334 52.381 0.00 0.00 0.00 6.53
1740 1791 1.641577 GCGCCTTCAAGACTTCGTAT 58.358 50.000 0.00 0.00 0.00 3.06
1746 1797 5.975344 CGCCTTCAAGACTTCGTATACAATA 59.025 40.000 3.32 0.00 0.00 1.90
1872 1923 6.199908 CGCAAAACCAACTATGAACATTGAAA 59.800 34.615 3.62 0.00 0.00 2.69
1874 1925 8.558700 GCAAAACCAACTATGAACATTGAAAAT 58.441 29.630 3.62 0.00 0.00 1.82
1909 1960 0.530870 GTGCATTCTACTCCCTCCGC 60.531 60.000 0.00 0.00 0.00 5.54
1927 1978 2.093658 CCGCCCCATAATATAAGAGCGT 60.094 50.000 0.00 0.00 40.66 5.07
1979 2030 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
1983 2034 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2040 2091 8.191446 TCTCACTCTGTGCTATACAAGTAATTC 58.809 37.037 0.00 0.00 39.20 2.17
2055 2106 8.193250 ACAAGTAATTCGATACCAATGTGTAC 57.807 34.615 0.00 0.00 0.00 2.90
2145 2196 6.830873 AATTCTGGAGGAGTCATTTTTCTG 57.169 37.500 0.00 0.00 0.00 3.02
2178 2229 3.834610 AGCACTTGCGTAAGTACTACAG 58.165 45.455 18.77 6.68 45.12 2.74
2219 2270 6.598753 TTTTCTATATGCTACGTTGCTTCC 57.401 37.500 22.01 0.00 0.00 3.46
2223 2274 0.107654 ATGCTACGTTGCTTCCTCCC 60.108 55.000 22.01 0.00 0.00 4.30
2228 2279 0.981183 ACGTTGCTTCCTCCCATACA 59.019 50.000 0.00 0.00 0.00 2.29
2234 2285 3.178046 TGCTTCCTCCCATACAGTTACA 58.822 45.455 0.00 0.00 0.00 2.41
2251 2302 6.313905 ACAGTTACATGCTTATGTGCTTCTAC 59.686 38.462 3.33 0.00 36.08 2.59
2291 2342 4.584327 ACAGGAATGTAAAGTTTGCCAC 57.416 40.909 0.00 0.00 0.00 5.01
2306 2357 8.630054 AAGTTTGCCACAGTCAGTAAATTATA 57.370 30.769 0.00 0.00 0.00 0.98
2330 2383 5.108385 AGTTCCGCTTTTACTTGAACATG 57.892 39.130 0.00 0.00 38.17 3.21
2451 2504 4.288366 TCCTTCCATTCAGGTGATTGTACA 59.712 41.667 0.00 0.00 39.02 2.90
2499 2552 2.771943 TCTATCTGCCACCCTTAGTTGG 59.228 50.000 0.00 0.00 0.00 3.77
2528 2581 4.645535 TCTGTTTGCTGCTCTTAGTGAAT 58.354 39.130 0.00 0.00 0.00 2.57
2786 2839 6.039270 TGTGCAGGGTTATTACTATTGCATTC 59.961 38.462 10.08 2.70 37.26 2.67
2798 2851 6.272822 ACTATTGCATTCCTTTTTGAGGTC 57.727 37.500 0.00 0.00 46.39 3.85
2801 2854 5.705609 TTGCATTCCTTTTTGAGGTCTAC 57.294 39.130 0.00 0.00 46.39 2.59
2808 2861 6.877611 TCCTTTTTGAGGTCTACAAACATC 57.122 37.500 0.00 0.00 46.39 3.06
2856 2909 9.017509 TGGATTTAGGTATACTATGGAGTTACG 57.982 37.037 2.25 0.00 37.10 3.18
2920 2973 3.304829 GAGGAGCAAGAGGAGGTAGAAT 58.695 50.000 0.00 0.00 0.00 2.40
2930 2983 7.757173 GCAAGAGGAGGTAGAATTTCAAATTTC 59.243 37.037 0.00 0.00 0.00 2.17
3133 3202 4.021229 TCTTCTTGGCCTTCTATCGTGTA 58.979 43.478 3.32 0.00 0.00 2.90
3142 3211 7.600065 TGGCCTTCTATCGTGTACTTATATTC 58.400 38.462 3.32 0.00 0.00 1.75
3204 3273 7.284034 ACATGATAAAGGGCATAGTCTTCAAAG 59.716 37.037 0.00 0.00 0.00 2.77
3394 3468 0.604578 TGAAAAATGGCAGGCTGAGC 59.395 50.000 20.86 2.88 0.00 4.26
3555 3629 5.431765 ACCATTCCATACAAGTGTGAGATC 58.568 41.667 0.00 0.00 0.00 2.75
3560 3634 6.410942 TCCATACAAGTGTGAGATCCTATG 57.589 41.667 0.00 0.00 0.00 2.23
3619 3693 4.748679 GCACTTGCTGCGGCTTCG 62.749 66.667 20.27 9.29 35.72 3.79
3749 3823 8.613482 TCTCGTGATAAGTTATCTGTAGTCAAG 58.387 37.037 20.80 5.90 36.17 3.02
3763 3837 5.779922 TGTAGTCAAGGTACTAAAGCACTG 58.220 41.667 0.00 0.00 38.49 3.66
3780 3854 6.513806 AGCACTGTAACATTGCAATTGATA 57.486 33.333 9.83 0.30 41.46 2.15
3801 3875 7.577303 TGATAGAATGCTGGAATTCTTTAGGT 58.423 34.615 8.88 0.00 42.92 3.08
3829 3903 5.778241 TGGTCATTTGTCTGAGTCCTACTTA 59.222 40.000 0.00 0.00 0.00 2.24
3886 3960 4.516698 TGCCTTCTCTTGTTGATCAGTTTC 59.483 41.667 0.00 0.00 0.00 2.78
3889 3963 5.762218 CCTTCTCTTGTTGATCAGTTTCTGT 59.238 40.000 0.00 0.00 32.61 3.41
4080 4155 5.048434 GCTCTTATGGAGATTGGCATTAACC 60.048 44.000 0.00 0.00 44.45 2.85
4115 4190 2.507484 CAGATTGCAGTTCTTGGTGGA 58.493 47.619 0.00 0.00 0.00 4.02
4186 4266 4.021102 GGAACCTGATTTCTCCTGTGAA 57.979 45.455 0.00 0.00 0.00 3.18
4188 4268 4.397417 GGAACCTGATTTCTCCTGTGAATG 59.603 45.833 0.00 0.00 0.00 2.67
4189 4269 3.960571 ACCTGATTTCTCCTGTGAATGG 58.039 45.455 0.00 0.00 0.00 3.16
4196 4276 6.550854 TGATTTCTCCTGTGAATGGTTTTTCT 59.449 34.615 0.00 0.00 0.00 2.52
4197 4277 6.790232 TTTCTCCTGTGAATGGTTTTTCTT 57.210 33.333 0.00 0.00 0.00 2.52
4198 4278 6.790232 TTCTCCTGTGAATGGTTTTTCTTT 57.210 33.333 0.00 0.00 0.00 2.52
4199 4279 6.790232 TCTCCTGTGAATGGTTTTTCTTTT 57.210 33.333 0.00 0.00 0.00 2.27
4200 4280 6.805713 TCTCCTGTGAATGGTTTTTCTTTTC 58.194 36.000 0.00 0.00 0.00 2.29
4201 4281 6.607198 TCTCCTGTGAATGGTTTTTCTTTTCT 59.393 34.615 0.00 0.00 0.00 2.52
4202 4282 6.572519 TCCTGTGAATGGTTTTTCTTTTCTG 58.427 36.000 0.00 0.00 0.00 3.02
4203 4283 6.379703 TCCTGTGAATGGTTTTTCTTTTCTGA 59.620 34.615 0.00 0.00 0.00 3.27
4204 4284 6.476706 CCTGTGAATGGTTTTTCTTTTCTGAC 59.523 38.462 0.00 0.00 0.00 3.51
4205 4285 7.169158 TGTGAATGGTTTTTCTTTTCTGACT 57.831 32.000 0.00 0.00 0.00 3.41
4206 4286 8.287439 TGTGAATGGTTTTTCTTTTCTGACTA 57.713 30.769 0.00 0.00 0.00 2.59
4207 4287 8.744652 TGTGAATGGTTTTTCTTTTCTGACTAA 58.255 29.630 0.00 0.00 0.00 2.24
4246 4332 8.447833 CGGCATTGTTATTTAGAAGAAACTACA 58.552 33.333 0.00 0.00 0.00 2.74
4319 4418 3.006430 TGATGCTCAGTTCTCCGTGTAAA 59.994 43.478 0.00 0.00 0.00 2.01
4320 4419 3.678056 TGCTCAGTTCTCCGTGTAAAT 57.322 42.857 0.00 0.00 0.00 1.40
4321 4420 3.325870 TGCTCAGTTCTCCGTGTAAATG 58.674 45.455 0.00 0.00 0.00 2.32
4322 4421 2.673368 GCTCAGTTCTCCGTGTAAATGG 59.327 50.000 0.00 0.00 0.00 3.16
4323 4422 3.616560 GCTCAGTTCTCCGTGTAAATGGA 60.617 47.826 0.00 0.00 0.00 3.41
4324 4423 3.921677 TCAGTTCTCCGTGTAAATGGAC 58.078 45.455 0.00 0.00 0.00 4.02
4326 4425 4.039973 TCAGTTCTCCGTGTAAATGGACTT 59.960 41.667 0.00 0.00 0.00 3.01
4327 4426 4.755123 CAGTTCTCCGTGTAAATGGACTTT 59.245 41.667 0.00 0.00 0.00 2.66
4328 4427 4.755123 AGTTCTCCGTGTAAATGGACTTTG 59.245 41.667 0.00 0.00 0.00 2.77
4343 4445 1.569072 ACTTTGGTGGTTTCACTCCCT 59.431 47.619 0.00 0.00 43.17 4.20
4409 4511 3.056035 GTCACTCGATCAACCCCTTAACT 60.056 47.826 0.00 0.00 0.00 2.24
4419 4521 8.899771 CGATCAACCCCTTAACTTATAATTTGT 58.100 33.333 0.00 0.00 0.00 2.83
4522 4626 1.824852 TCATGAGAAGGCGCTGTAAGA 59.175 47.619 7.64 0.00 34.07 2.10
4530 4634 2.898705 AGGCGCTGTAAGAGAAATCTG 58.101 47.619 7.64 0.00 34.81 2.90
4626 4730 2.557056 TGTCGACTGTAGGGACTTCTTG 59.443 50.000 17.92 0.00 41.75 3.02
4724 4828 5.798132 TGCACAATTTATGCCCAACAATTA 58.202 33.333 8.60 0.00 42.69 1.40
4750 4854 6.015095 TGTCTCCATTCTCGTGCAGATTATAT 60.015 38.462 0.00 0.00 0.00 0.86
4895 4999 9.577110 CAGATACATCATTTACTTGCAAAATGT 57.423 29.630 17.59 8.28 42.39 2.71
4933 5037 5.569355 TGCCATCCTCTAAGAAAACATTGA 58.431 37.500 0.00 0.00 0.00 2.57
4974 5078 7.281999 AGAGAAATCAGCAGTTTAGCTATTTCC 59.718 37.037 17.25 12.78 44.54 3.13
4975 5079 6.886459 AGAAATCAGCAGTTTAGCTATTTCCA 59.114 34.615 17.25 0.00 44.54 3.53
4976 5080 7.559170 AGAAATCAGCAGTTTAGCTATTTCCAT 59.441 33.333 17.25 6.84 44.54 3.41
5033 5137 9.396022 GAAAGTCTTGATTATCCACAGGAAATA 57.604 33.333 0.00 0.00 34.34 1.40
5041 5145 9.778741 TGATTATCCACAGGAAATATACTGTTC 57.221 33.333 5.24 2.02 45.03 3.18
5148 5252 3.119291 GCATGATTGGTACTGAGACTCG 58.881 50.000 0.00 0.00 0.00 4.18
5168 5272 0.586802 GAGCACGTGGAAACCTCAAC 59.413 55.000 18.88 0.00 0.00 3.18
5180 5284 3.515602 AACCTCAACTCCAAAGAGCAT 57.484 42.857 0.00 0.00 44.65 3.79
5181 5285 3.515602 ACCTCAACTCCAAAGAGCATT 57.484 42.857 0.00 0.00 44.65 3.56
5361 5472 5.413833 CAGAAAGTCTATGGCACTGTTGAAT 59.586 40.000 0.00 0.00 0.00 2.57
5382 5493 2.483876 TGTTTCAGTCTAGCACAGCAC 58.516 47.619 0.00 0.00 0.00 4.40
5399 5523 3.258372 CAGCACTTGGTCTTCCTACAGTA 59.742 47.826 0.00 0.00 34.23 2.74
5424 5555 3.938963 GAGGTGATAATTGTTGCGAGGAA 59.061 43.478 0.00 0.00 0.00 3.36
5483 5614 2.095364 CCTGTTGCAGATCTCAGTTTGC 60.095 50.000 8.01 2.54 37.09 3.68
5484 5615 1.881973 TGTTGCAGATCTCAGTTTGCC 59.118 47.619 0.00 0.00 35.75 4.52
5485 5616 2.157738 GTTGCAGATCTCAGTTTGCCT 58.842 47.619 0.00 0.00 35.75 4.75
5486 5617 2.105006 TGCAGATCTCAGTTTGCCTC 57.895 50.000 0.00 0.00 35.75 4.70
5487 5618 1.005340 GCAGATCTCAGTTTGCCTCG 58.995 55.000 0.00 0.00 0.00 4.63
5488 5619 1.674221 GCAGATCTCAGTTTGCCTCGT 60.674 52.381 0.00 0.00 0.00 4.18
5489 5620 1.998315 CAGATCTCAGTTTGCCTCGTG 59.002 52.381 0.00 0.00 0.00 4.35
5490 5621 0.723981 GATCTCAGTTTGCCTCGTGC 59.276 55.000 0.00 0.00 41.77 5.34
5491 5622 0.322975 ATCTCAGTTTGCCTCGTGCT 59.677 50.000 1.74 0.00 42.00 4.40
5492 5623 0.106708 TCTCAGTTTGCCTCGTGCTT 59.893 50.000 1.74 0.00 42.00 3.91
5493 5624 0.947244 CTCAGTTTGCCTCGTGCTTT 59.053 50.000 1.74 0.00 42.00 3.51
5494 5625 1.334869 CTCAGTTTGCCTCGTGCTTTT 59.665 47.619 1.74 0.00 42.00 2.27
5495 5626 1.333619 TCAGTTTGCCTCGTGCTTTTC 59.666 47.619 1.74 0.00 42.00 2.29
5496 5627 1.334869 CAGTTTGCCTCGTGCTTTTCT 59.665 47.619 1.74 0.00 42.00 2.52
5497 5628 1.334869 AGTTTGCCTCGTGCTTTTCTG 59.665 47.619 1.74 0.00 42.00 3.02
5498 5629 0.667993 TTTGCCTCGTGCTTTTCTGG 59.332 50.000 1.74 0.00 42.00 3.86
5499 5630 0.465460 TTGCCTCGTGCTTTTCTGGT 60.465 50.000 1.74 0.00 42.00 4.00
5500 5631 0.394938 TGCCTCGTGCTTTTCTGGTA 59.605 50.000 1.74 0.00 42.00 3.25
5501 5632 1.202710 TGCCTCGTGCTTTTCTGGTAA 60.203 47.619 1.74 0.00 42.00 2.85
5502 5633 1.197036 GCCTCGTGCTTTTCTGGTAAC 59.803 52.381 0.00 0.00 36.87 2.50
5503 5634 3.383272 GCCTCGTGCTTTTCTGGTAACA 61.383 50.000 0.00 0.00 40.59 2.41
5504 5635 4.847228 GCCTCGTGCTTTTCTGGTAACAA 61.847 47.826 0.00 0.00 41.92 2.83
5505 5636 6.273509 GCCTCGTGCTTTTCTGGTAACAAA 62.274 45.833 0.00 0.00 41.92 2.83
5506 5637 7.503011 GCCTCGTGCTTTTCTGGTAACAAAT 62.503 44.000 0.00 0.00 41.92 2.32
5507 5638 8.873746 GCCTCGTGCTTTTCTGGTAACAAATT 62.874 42.308 0.00 0.00 41.92 1.82
5521 5652 6.554419 GGTAACAAATTTACGACAATACCCC 58.446 40.000 0.00 0.00 0.00 4.95
5522 5653 6.375174 GGTAACAAATTTACGACAATACCCCT 59.625 38.462 0.00 0.00 0.00 4.79
5523 5654 6.505044 AACAAATTTACGACAATACCCCTC 57.495 37.500 0.00 0.00 0.00 4.30
5524 5655 4.945543 ACAAATTTACGACAATACCCCTCC 59.054 41.667 0.00 0.00 0.00 4.30
5525 5656 2.965572 TTTACGACAATACCCCTCCG 57.034 50.000 0.00 0.00 0.00 4.63
5526 5657 1.113788 TTACGACAATACCCCTCCGG 58.886 55.000 0.00 0.00 37.81 5.14
5542 5673 3.019564 CTCCGGGAGAGCAAAAATGATT 58.980 45.455 19.57 0.00 35.31 2.57
5654 5788 0.036732 ACTGGCCAATTTCTCAGCGA 59.963 50.000 7.01 0.00 0.00 4.93
5667 5801 1.226717 CAGCGACGAGGACTAAGCC 60.227 63.158 0.00 0.00 0.00 4.35
5691 5825 9.331282 GCCAATCTAGTTATTAGAAGTTCACAT 57.669 33.333 5.50 0.00 41.59 3.21
5734 5868 3.359950 GGCATCTCTGTTCTTGGGATTT 58.640 45.455 0.00 0.00 0.00 2.17
5803 5937 2.731976 GCATAGAGTATACAGCGTTGGC 59.268 50.000 5.50 0.00 40.37 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.265056 ACCCCGGCCAACACTCAC 62.265 66.667 2.24 0.00 0.00 3.51
2 3 4.263572 CACCCCGGCCAACACTCA 62.264 66.667 2.24 0.00 0.00 3.41
3 4 2.969300 TTTCACCCCGGCCAACACTC 62.969 60.000 2.24 0.00 0.00 3.51
4 5 2.575455 TTTTCACCCCGGCCAACACT 62.575 55.000 2.24 0.00 0.00 3.55
5 6 2.128507 TTTTCACCCCGGCCAACAC 61.129 57.895 2.24 0.00 0.00 3.32
6 7 2.128507 GTTTTCACCCCGGCCAACA 61.129 57.895 2.24 0.00 0.00 3.33
7 8 2.732016 GTTTTCACCCCGGCCAAC 59.268 61.111 2.24 0.00 0.00 3.77
8 9 2.522193 GGTTTTCACCCCGGCCAA 60.522 61.111 2.24 0.00 37.03 4.52
9 10 3.503839 AGGTTTTCACCCCGGCCA 61.504 61.111 2.24 0.00 45.63 5.36
10 11 2.781431 ATCAGGTTTTCACCCCGGCC 62.781 60.000 0.00 0.00 45.63 6.13
11 12 1.304134 ATCAGGTTTTCACCCCGGC 60.304 57.895 0.00 0.00 45.63 6.13
12 13 0.328258 AGATCAGGTTTTCACCCCGG 59.672 55.000 0.00 0.00 45.63 5.73
13 14 3.560636 ATAGATCAGGTTTTCACCCCG 57.439 47.619 0.00 0.00 45.63 5.73
14 15 3.877508 CGAATAGATCAGGTTTTCACCCC 59.122 47.826 0.00 0.00 45.63 4.95
15 16 3.312697 GCGAATAGATCAGGTTTTCACCC 59.687 47.826 0.00 0.00 45.63 4.61
16 17 3.001330 CGCGAATAGATCAGGTTTTCACC 59.999 47.826 0.00 0.00 44.67 4.02
17 18 3.001330 CCGCGAATAGATCAGGTTTTCAC 59.999 47.826 8.23 0.00 0.00 3.18
18 19 3.118920 TCCGCGAATAGATCAGGTTTTCA 60.119 43.478 8.23 0.00 0.00 2.69
19 20 3.454375 TCCGCGAATAGATCAGGTTTTC 58.546 45.455 8.23 0.00 0.00 2.29
20 21 3.536956 TCCGCGAATAGATCAGGTTTT 57.463 42.857 8.23 0.00 0.00 2.43
21 22 3.393800 CATCCGCGAATAGATCAGGTTT 58.606 45.455 8.23 0.00 0.00 3.27
22 23 2.289072 CCATCCGCGAATAGATCAGGTT 60.289 50.000 8.23 0.00 0.00 3.50
23 24 1.273606 CCATCCGCGAATAGATCAGGT 59.726 52.381 8.23 0.00 0.00 4.00
24 25 1.546029 TCCATCCGCGAATAGATCAGG 59.454 52.381 8.23 0.20 0.00 3.86
25 26 2.600731 GTCCATCCGCGAATAGATCAG 58.399 52.381 8.23 0.00 0.00 2.90
26 27 1.272490 GGTCCATCCGCGAATAGATCA 59.728 52.381 8.23 0.00 0.00 2.92
27 28 1.997669 GGTCCATCCGCGAATAGATC 58.002 55.000 8.23 0.00 0.00 2.75
50 51 4.148645 GAAACGAGCTTCGCCGCC 62.149 66.667 5.63 0.00 45.12 6.13
51 52 4.148645 GGAAACGAGCTTCGCCGC 62.149 66.667 5.63 0.00 45.12 6.53
52 53 1.956620 GAAGGAAACGAGCTTCGCCG 61.957 60.000 5.63 0.00 45.12 6.46
53 54 0.670854 AGAAGGAAACGAGCTTCGCC 60.671 55.000 5.63 0.57 45.12 5.54
54 55 1.136224 CAAGAAGGAAACGAGCTTCGC 60.136 52.381 5.63 0.00 45.12 4.70
55 56 2.404215 TCAAGAAGGAAACGAGCTTCG 58.596 47.619 0.00 0.00 46.93 3.79
56 57 4.397064 CTTCAAGAAGGAAACGAGCTTC 57.603 45.455 1.86 0.00 34.87 3.86
68 69 2.062779 CGACGACGCCTTCAAGAAG 58.937 57.895 2.83 2.83 38.14 2.85
69 70 4.238385 CGACGACGCCTTCAAGAA 57.762 55.556 0.00 0.00 0.00 2.52
79 80 4.538283 ATGAGAGCCGCGACGACG 62.538 66.667 8.23 2.12 42.93 5.12
80 81 2.202623 AATGAGAGCCGCGACGAC 60.203 61.111 8.23 0.00 0.00 4.34
81 82 2.202610 CAATGAGAGCCGCGACGA 60.203 61.111 8.23 0.00 0.00 4.20
82 83 3.918220 GCAATGAGAGCCGCGACG 61.918 66.667 8.23 0.00 0.00 5.12
83 84 3.567797 GGCAATGAGAGCCGCGAC 61.568 66.667 8.23 0.00 43.15 5.19
89 90 2.125512 ACGACGGGCAATGAGAGC 60.126 61.111 0.00 0.00 0.00 4.09
90 91 0.803768 CAGACGACGGGCAATGAGAG 60.804 60.000 0.00 0.00 0.00 3.20
91 92 1.215382 CAGACGACGGGCAATGAGA 59.785 57.895 0.00 0.00 0.00 3.27
92 93 0.179100 ATCAGACGACGGGCAATGAG 60.179 55.000 0.00 0.00 0.00 2.90
93 94 0.179111 GATCAGACGACGGGCAATGA 60.179 55.000 0.00 0.00 0.00 2.57
94 95 1.154205 GGATCAGACGACGGGCAATG 61.154 60.000 0.00 0.00 0.00 2.82
95 96 1.144057 GGATCAGACGACGGGCAAT 59.856 57.895 0.00 0.00 0.00 3.56
96 97 1.945354 GAGGATCAGACGACGGGCAA 61.945 60.000 0.00 0.00 33.17 4.52
97 98 2.362503 AGGATCAGACGACGGGCA 60.363 61.111 0.00 0.00 0.00 5.36
98 99 2.413765 GAGGATCAGACGACGGGC 59.586 66.667 0.00 0.00 33.17 6.13
99 100 2.716244 CGAGGATCAGACGACGGG 59.284 66.667 0.00 0.00 33.17 5.28
100 101 2.716244 CCGAGGATCAGACGACGG 59.284 66.667 0.00 0.00 33.17 4.79
101 102 2.049475 GACCCGAGGATCAGACGACG 62.049 65.000 0.00 0.00 33.17 5.12
102 103 1.728672 GACCCGAGGATCAGACGAC 59.271 63.158 0.00 0.00 33.17 4.34
103 104 1.818363 CGACCCGAGGATCAGACGA 60.818 63.158 0.00 0.00 30.38 4.20
104 105 2.716244 CGACCCGAGGATCAGACG 59.284 66.667 0.00 0.00 33.17 4.18
105 106 2.491022 CCCGACCCGAGGATCAGAC 61.491 68.421 0.00 0.00 33.17 3.51
106 107 2.123854 CCCGACCCGAGGATCAGA 60.124 66.667 0.00 0.00 33.17 3.27
107 108 3.917760 GCCCGACCCGAGGATCAG 61.918 72.222 0.00 0.00 33.17 2.90
130 131 3.620300 TTACGACACCAGAGCGCCG 62.620 63.158 2.29 0.00 0.00 6.46
131 132 2.092882 GTTACGACACCAGAGCGCC 61.093 63.158 2.29 0.00 0.00 6.53
132 133 2.092882 GGTTACGACACCAGAGCGC 61.093 63.158 0.00 0.00 36.73 5.92
133 134 0.038526 AAGGTTACGACACCAGAGCG 60.039 55.000 9.91 0.00 39.62 5.03
134 135 2.067013 GAAAGGTTACGACACCAGAGC 58.933 52.381 9.91 0.00 39.62 4.09
135 136 3.005472 TCAGAAAGGTTACGACACCAGAG 59.995 47.826 9.91 0.00 39.62 3.35
136 137 2.960384 TCAGAAAGGTTACGACACCAGA 59.040 45.455 9.91 0.00 39.62 3.86
137 138 3.380479 TCAGAAAGGTTACGACACCAG 57.620 47.619 9.91 0.00 39.62 4.00
138 139 3.493699 CCTTCAGAAAGGTTACGACACCA 60.494 47.826 9.91 0.00 46.10 4.17
139 140 3.064931 CCTTCAGAAAGGTTACGACACC 58.935 50.000 0.00 0.00 46.10 4.16
150 151 3.804193 GGCGGCGCCTTCAGAAAG 61.804 66.667 41.44 7.15 46.69 2.62
162 163 3.818787 CATGTGCTCCAAGGCGGC 61.819 66.667 0.00 0.00 34.52 6.53
163 164 3.136123 CCATGTGCTCCAAGGCGG 61.136 66.667 0.00 0.00 34.52 6.13
164 165 1.926511 GAACCATGTGCTCCAAGGCG 61.927 60.000 0.00 0.00 35.23 5.52
165 166 1.885871 GAACCATGTGCTCCAAGGC 59.114 57.895 0.00 0.00 35.23 4.35
166 167 0.606401 ACGAACCATGTGCTCCAAGG 60.606 55.000 0.00 0.00 37.93 3.61
167 168 0.798776 GACGAACCATGTGCTCCAAG 59.201 55.000 0.00 0.00 0.00 3.61
168 169 0.107643 TGACGAACCATGTGCTCCAA 59.892 50.000 0.00 0.00 0.00 3.53
169 170 0.324614 ATGACGAACCATGTGCTCCA 59.675 50.000 0.00 0.00 0.00 3.86
170 171 2.205074 CTATGACGAACCATGTGCTCC 58.795 52.381 0.00 0.00 0.00 4.70
171 172 2.205074 CCTATGACGAACCATGTGCTC 58.795 52.381 0.00 0.00 0.00 4.26
172 173 1.743772 GCCTATGACGAACCATGTGCT 60.744 52.381 0.00 0.00 0.00 4.40
173 174 0.657840 GCCTATGACGAACCATGTGC 59.342 55.000 0.00 0.00 0.00 4.57
174 175 0.930310 CGCCTATGACGAACCATGTG 59.070 55.000 0.00 0.00 0.00 3.21
175 176 0.179084 CCGCCTATGACGAACCATGT 60.179 55.000 0.00 0.00 0.00 3.21
176 177 1.498865 GCCGCCTATGACGAACCATG 61.499 60.000 0.00 0.00 0.00 3.66
177 178 1.227556 GCCGCCTATGACGAACCAT 60.228 57.895 0.00 0.00 0.00 3.55
178 179 1.895020 AAGCCGCCTATGACGAACCA 61.895 55.000 0.00 0.00 0.00 3.67
179 180 1.152383 GAAGCCGCCTATGACGAACC 61.152 60.000 0.00 0.00 0.00 3.62
180 181 0.459585 TGAAGCCGCCTATGACGAAC 60.460 55.000 0.00 0.00 0.00 3.95
181 182 0.464036 ATGAAGCCGCCTATGACGAA 59.536 50.000 0.00 0.00 0.00 3.85
182 183 0.032130 GATGAAGCCGCCTATGACGA 59.968 55.000 0.00 0.00 0.00 4.20
183 184 0.032678 AGATGAAGCCGCCTATGACG 59.967 55.000 0.00 0.00 0.00 4.35
184 185 1.342819 AGAGATGAAGCCGCCTATGAC 59.657 52.381 0.00 0.00 0.00 3.06
185 186 1.709578 AGAGATGAAGCCGCCTATGA 58.290 50.000 0.00 0.00 0.00 2.15
186 187 2.411904 GAAGAGATGAAGCCGCCTATG 58.588 52.381 0.00 0.00 0.00 2.23
187 188 1.000283 CGAAGAGATGAAGCCGCCTAT 60.000 52.381 0.00 0.00 0.00 2.57
188 189 0.385751 CGAAGAGATGAAGCCGCCTA 59.614 55.000 0.00 0.00 0.00 3.93
189 190 1.142748 CGAAGAGATGAAGCCGCCT 59.857 57.895 0.00 0.00 0.00 5.52
190 191 2.529619 GCGAAGAGATGAAGCCGCC 61.530 63.158 0.00 0.00 37.09 6.13
191 192 2.864931 CGCGAAGAGATGAAGCCGC 61.865 63.158 0.00 0.00 39.33 6.53
192 193 2.233654 CCGCGAAGAGATGAAGCCG 61.234 63.158 8.23 0.00 0.00 5.52
193 194 1.153549 ACCGCGAAGAGATGAAGCC 60.154 57.895 8.23 0.00 0.00 4.35
194 195 1.424493 CCACCGCGAAGAGATGAAGC 61.424 60.000 8.23 0.00 0.00 3.86
195 196 1.424493 GCCACCGCGAAGAGATGAAG 61.424 60.000 8.23 0.00 0.00 3.02
196 197 1.447838 GCCACCGCGAAGAGATGAA 60.448 57.895 8.23 0.00 0.00 2.57
197 198 1.960040 ATGCCACCGCGAAGAGATGA 61.960 55.000 8.23 0.00 38.08 2.92
198 199 1.522355 ATGCCACCGCGAAGAGATG 60.522 57.895 8.23 0.00 38.08 2.90
199 200 1.522355 CATGCCACCGCGAAGAGAT 60.522 57.895 8.23 0.00 38.08 2.75
200 201 2.125552 CATGCCACCGCGAAGAGA 60.126 61.111 8.23 0.00 38.08 3.10
201 202 3.869272 GCATGCCACCGCGAAGAG 61.869 66.667 8.23 0.00 38.08 2.85
202 203 4.393155 AGCATGCCACCGCGAAGA 62.393 61.111 15.66 0.00 38.08 2.87
203 204 3.869272 GAGCATGCCACCGCGAAG 61.869 66.667 15.66 0.00 38.08 3.79
204 205 4.695993 TGAGCATGCCACCGCGAA 62.696 61.111 15.66 0.00 38.08 4.70
209 210 2.672996 AACCGTGAGCATGCCACC 60.673 61.111 24.48 12.72 0.00 4.61
210 211 1.915614 CTCAACCGTGAGCATGCCAC 61.916 60.000 22.16 22.16 44.74 5.01
211 212 1.672030 CTCAACCGTGAGCATGCCA 60.672 57.895 15.66 9.53 44.74 4.92
212 213 3.181367 CTCAACCGTGAGCATGCC 58.819 61.111 15.66 6.65 44.74 4.40
219 220 1.185618 CCTGGAGTCCTCAACCGTGA 61.186 60.000 11.33 0.00 0.00 4.35
220 221 1.293498 CCTGGAGTCCTCAACCGTG 59.707 63.158 11.33 0.00 0.00 4.94
221 222 0.763223 AACCTGGAGTCCTCAACCGT 60.763 55.000 11.33 0.00 0.00 4.83
222 223 0.037232 GAACCTGGAGTCCTCAACCG 60.037 60.000 11.33 0.00 0.00 4.44
223 224 1.276705 GAGAACCTGGAGTCCTCAACC 59.723 57.143 11.33 0.00 0.00 3.77
224 225 2.252714 AGAGAACCTGGAGTCCTCAAC 58.747 52.381 11.33 0.00 0.00 3.18
225 226 2.634940 CAAGAGAACCTGGAGTCCTCAA 59.365 50.000 11.33 0.00 0.00 3.02
226 227 2.251818 CAAGAGAACCTGGAGTCCTCA 58.748 52.381 11.33 0.00 0.00 3.86
227 228 2.252714 ACAAGAGAACCTGGAGTCCTC 58.747 52.381 11.33 0.00 0.00 3.71
228 229 2.407340 ACAAGAGAACCTGGAGTCCT 57.593 50.000 11.33 0.00 0.00 3.85
229 230 3.166679 ACTACAAGAGAACCTGGAGTCC 58.833 50.000 0.73 0.73 0.00 3.85
230 231 5.011586 AGTACTACAAGAGAACCTGGAGTC 58.988 45.833 0.00 0.00 0.00 3.36
231 232 5.000570 AGTACTACAAGAGAACCTGGAGT 57.999 43.478 0.00 0.00 0.00 3.85
232 233 5.591067 CCTAGTACTACAAGAGAACCTGGAG 59.409 48.000 0.00 0.00 0.00 3.86
233 234 5.507637 CCTAGTACTACAAGAGAACCTGGA 58.492 45.833 0.00 0.00 0.00 3.86
234 235 4.098196 GCCTAGTACTACAAGAGAACCTGG 59.902 50.000 0.00 0.00 0.00 4.45
235 236 4.951094 AGCCTAGTACTACAAGAGAACCTG 59.049 45.833 0.00 0.00 0.00 4.00
236 237 5.195185 GAGCCTAGTACTACAAGAGAACCT 58.805 45.833 0.00 0.00 0.00 3.50
237 238 4.948621 TGAGCCTAGTACTACAAGAGAACC 59.051 45.833 0.00 0.00 0.00 3.62
238 239 5.449451 GCTGAGCCTAGTACTACAAGAGAAC 60.449 48.000 0.00 0.00 0.00 3.01
239 240 4.641094 GCTGAGCCTAGTACTACAAGAGAA 59.359 45.833 0.00 0.00 0.00 2.87
240 241 4.200874 GCTGAGCCTAGTACTACAAGAGA 58.799 47.826 0.00 0.00 0.00 3.10
241 242 3.002862 CGCTGAGCCTAGTACTACAAGAG 59.997 52.174 0.00 0.00 0.00 2.85
242 243 2.943690 CGCTGAGCCTAGTACTACAAGA 59.056 50.000 0.00 0.00 0.00 3.02
243 244 2.541999 GCGCTGAGCCTAGTACTACAAG 60.542 54.545 0.00 0.00 40.81 3.16
244 245 1.404391 GCGCTGAGCCTAGTACTACAA 59.596 52.381 0.00 0.00 40.81 2.41
245 246 1.022735 GCGCTGAGCCTAGTACTACA 58.977 55.000 0.00 0.00 40.81 2.74
246 247 3.849619 GCGCTGAGCCTAGTACTAC 57.150 57.895 0.00 0.00 40.81 2.73
257 258 1.871772 CAGGAACAAAGGCGCTGAG 59.128 57.895 7.64 0.00 0.00 3.35
258 259 2.260869 GCAGGAACAAAGGCGCTGA 61.261 57.895 7.64 0.00 0.00 4.26
259 260 2.256461 GCAGGAACAAAGGCGCTG 59.744 61.111 7.64 0.00 0.00 5.18
260 261 2.983725 AAGGCAGGAACAAAGGCGCT 62.984 55.000 7.64 0.00 0.00 5.92
261 262 2.564721 AAGGCAGGAACAAAGGCGC 61.565 57.895 0.00 0.00 0.00 6.53
262 263 1.286880 CAAGGCAGGAACAAAGGCG 59.713 57.895 0.00 0.00 0.00 5.52
263 264 1.667722 CCAAGGCAGGAACAAAGGC 59.332 57.895 0.00 0.00 0.00 4.35
264 265 0.469892 ACCCAAGGCAGGAACAAAGG 60.470 55.000 0.00 0.00 0.00 3.11
265 266 0.675633 CACCCAAGGCAGGAACAAAG 59.324 55.000 0.00 0.00 0.00 2.77
266 267 1.398958 GCACCCAAGGCAGGAACAAA 61.399 55.000 0.00 0.00 0.00 2.83
267 268 1.832167 GCACCCAAGGCAGGAACAA 60.832 57.895 0.00 0.00 0.00 2.83
268 269 2.203480 GCACCCAAGGCAGGAACA 60.203 61.111 0.00 0.00 0.00 3.18
269 270 3.365265 CGCACCCAAGGCAGGAAC 61.365 66.667 0.00 0.00 0.00 3.62
270 271 3.884774 ACGCACCCAAGGCAGGAA 61.885 61.111 0.00 0.00 0.00 3.36
271 272 4.641645 CACGCACCCAAGGCAGGA 62.642 66.667 0.00 0.00 0.00 3.86
277 278 4.312231 CACACGCACGCACCCAAG 62.312 66.667 0.00 0.00 0.00 3.61
280 281 4.605967 CAACACACGCACGCACCC 62.606 66.667 0.00 0.00 0.00 4.61
281 282 2.526993 TACAACACACGCACGCACC 61.527 57.895 0.00 0.00 0.00 5.01
282 283 1.367195 GTACAACACACGCACGCAC 60.367 57.895 0.00 0.00 0.00 5.34
283 284 1.519676 AGTACAACACACGCACGCA 60.520 52.632 0.00 0.00 0.00 5.24
284 285 1.083657 CAGTACAACACACGCACGC 60.084 57.895 0.00 0.00 0.00 5.34
285 286 1.562691 CCAGTACAACACACGCACG 59.437 57.895 0.00 0.00 0.00 5.34
286 287 1.278637 GCCAGTACAACACACGCAC 59.721 57.895 0.00 0.00 0.00 5.34
287 288 2.241190 CGCCAGTACAACACACGCA 61.241 57.895 0.00 0.00 0.00 5.24
288 289 2.241880 ACGCCAGTACAACACACGC 61.242 57.895 0.00 0.00 0.00 5.34
289 290 1.562691 CACGCCAGTACAACACACG 59.437 57.895 0.00 0.00 0.00 4.49
290 291 1.278637 GCACGCCAGTACAACACAC 59.721 57.895 0.00 0.00 0.00 3.82
291 292 2.241190 CGCACGCCAGTACAACACA 61.241 57.895 0.00 0.00 0.00 3.72
292 293 1.768112 AACGCACGCCAGTACAACAC 61.768 55.000 0.00 0.00 0.00 3.32
293 294 1.090625 AAACGCACGCCAGTACAACA 61.091 50.000 0.00 0.00 0.00 3.33
294 295 0.656205 CAAACGCACGCCAGTACAAC 60.656 55.000 0.00 0.00 0.00 3.32
295 296 1.090625 ACAAACGCACGCCAGTACAA 61.091 50.000 0.00 0.00 0.00 2.41
296 297 0.249363 TACAAACGCACGCCAGTACA 60.249 50.000 0.00 0.00 0.00 2.90
297 298 1.060122 GATACAAACGCACGCCAGTAC 59.940 52.381 0.00 0.00 0.00 2.73
298 299 1.067425 AGATACAAACGCACGCCAGTA 60.067 47.619 0.00 0.00 0.00 2.74
299 300 0.320421 AGATACAAACGCACGCCAGT 60.320 50.000 0.00 0.00 0.00 4.00
300 301 0.095245 CAGATACAAACGCACGCCAG 59.905 55.000 0.00 0.00 0.00 4.85
301 302 0.319986 TCAGATACAAACGCACGCCA 60.320 50.000 0.00 0.00 0.00 5.69
302 303 0.370273 CTCAGATACAAACGCACGCC 59.630 55.000 0.00 0.00 0.00 5.68
303 304 1.059264 GACTCAGATACAAACGCACGC 59.941 52.381 0.00 0.00 0.00 5.34
304 305 1.317611 CGACTCAGATACAAACGCACG 59.682 52.381 0.00 0.00 0.00 5.34
305 306 1.654105 CCGACTCAGATACAAACGCAC 59.346 52.381 0.00 0.00 0.00 5.34
306 307 1.271379 ACCGACTCAGATACAAACGCA 59.729 47.619 0.00 0.00 0.00 5.24
307 308 1.918609 GACCGACTCAGATACAAACGC 59.081 52.381 0.00 0.00 0.00 4.84
308 309 2.174764 CGACCGACTCAGATACAAACG 58.825 52.381 0.00 0.00 0.00 3.60
309 310 2.094854 ACCGACCGACTCAGATACAAAC 60.095 50.000 0.00 0.00 0.00 2.93
310 311 2.094906 CACCGACCGACTCAGATACAAA 60.095 50.000 0.00 0.00 0.00 2.83
311 312 1.471287 CACCGACCGACTCAGATACAA 59.529 52.381 0.00 0.00 0.00 2.41
312 313 1.092348 CACCGACCGACTCAGATACA 58.908 55.000 0.00 0.00 0.00 2.29
313 314 0.248539 GCACCGACCGACTCAGATAC 60.249 60.000 0.00 0.00 0.00 2.24
314 315 0.393944 AGCACCGACCGACTCAGATA 60.394 55.000 0.00 0.00 0.00 1.98
315 316 1.251527 AAGCACCGACCGACTCAGAT 61.252 55.000 0.00 0.00 0.00 2.90
316 317 1.461091 AAAGCACCGACCGACTCAGA 61.461 55.000 0.00 0.00 0.00 3.27
317 318 0.242825 TAAAGCACCGACCGACTCAG 59.757 55.000 0.00 0.00 0.00 3.35
318 319 0.892755 ATAAAGCACCGACCGACTCA 59.107 50.000 0.00 0.00 0.00 3.41
319 320 2.857592 TATAAAGCACCGACCGACTC 57.142 50.000 0.00 0.00 0.00 3.36
320 321 6.579666 TTATATATAAAGCACCGACCGACT 57.420 37.500 2.56 0.00 0.00 4.18
321 322 7.274442 CTTTATATATAAAGCACCGACCGAC 57.726 40.000 25.10 0.00 41.69 4.79
333 334 7.443259 GCTTTCGCCCCACTTTATATATAAA 57.557 36.000 15.47 15.47 0.00 1.40
350 351 5.271625 GCTTATACCTAAAAAGGCTTTCGC 58.728 41.667 13.76 0.54 0.00 4.70
351 352 5.220989 GGGCTTATACCTAAAAAGGCTTTCG 60.221 44.000 13.76 5.04 43.28 3.46
352 353 5.220989 CGGGCTTATACCTAAAAAGGCTTTC 60.221 44.000 13.76 0.00 43.28 2.62
353 354 4.643334 CGGGCTTATACCTAAAAAGGCTTT 59.357 41.667 6.68 6.68 43.28 3.51
354 355 4.204799 CGGGCTTATACCTAAAAAGGCTT 58.795 43.478 0.00 0.00 43.28 4.35
355 356 3.434596 CCGGGCTTATACCTAAAAAGGCT 60.435 47.826 0.00 0.00 43.28 4.58
356 357 2.882761 CCGGGCTTATACCTAAAAAGGC 59.117 50.000 0.00 0.00 43.08 4.35
357 358 4.386711 CTCCGGGCTTATACCTAAAAAGG 58.613 47.826 0.00 0.00 0.00 3.11
358 359 4.102054 TCCTCCGGGCTTATACCTAAAAAG 59.898 45.833 0.00 0.00 0.00 2.27
359 360 4.039339 TCCTCCGGGCTTATACCTAAAAA 58.961 43.478 0.00 0.00 0.00 1.94
360 361 3.389002 GTCCTCCGGGCTTATACCTAAAA 59.611 47.826 0.00 0.00 0.00 1.52
361 362 2.967887 GTCCTCCGGGCTTATACCTAAA 59.032 50.000 0.00 0.00 0.00 1.85
362 363 2.091166 TGTCCTCCGGGCTTATACCTAA 60.091 50.000 0.00 0.00 0.00 2.69
363 364 1.500303 TGTCCTCCGGGCTTATACCTA 59.500 52.381 0.00 0.00 0.00 3.08
364 365 0.263765 TGTCCTCCGGGCTTATACCT 59.736 55.000 0.00 0.00 0.00 3.08
365 366 0.391966 GTGTCCTCCGGGCTTATACC 59.608 60.000 0.00 0.00 0.00 2.73
366 367 1.068741 CTGTGTCCTCCGGGCTTATAC 59.931 57.143 0.00 0.00 0.00 1.47
367 368 1.410004 CTGTGTCCTCCGGGCTTATA 58.590 55.000 0.00 0.00 0.00 0.98
509 522 6.439675 TCGTAGTTTGCTTAGTTTGGTTTT 57.560 33.333 0.00 0.00 0.00 2.43
573 591 3.940640 CGCCATGTCCGGAATGCG 61.941 66.667 19.23 19.23 0.00 4.73
740 768 1.607467 ACCCCAGCATTGTCTTGGC 60.607 57.895 0.00 0.00 0.00 4.52
790 825 1.205064 CACGTTCAAAGGCTCGCTG 59.795 57.895 0.00 0.00 0.00 5.18
796 831 2.644992 CAGCCCACGTTCAAAGGC 59.355 61.111 0.00 0.00 46.13 4.35
868 903 1.939255 GTTCGAACGGGTTGTTGGTAA 59.061 47.619 13.36 0.00 42.09 2.85
1032 1067 0.491823 TGGAGGAGGAGGAGGTGAAA 59.508 55.000 0.00 0.00 0.00 2.69
1076 1114 4.593864 GCGGGCGGAGAGATGGAC 62.594 72.222 0.00 0.00 0.00 4.02
1195 1239 0.754217 TCGATCGGAGGGGATTTCGT 60.754 55.000 16.41 0.00 0.00 3.85
1203 1247 2.341543 CCTGCATCGATCGGAGGG 59.658 66.667 16.41 7.15 38.27 4.30
1454 1501 3.866582 CCCGAGATCCCCCAGCAC 61.867 72.222 0.00 0.00 0.00 4.40
1529 1577 6.846350 AGAAATAAAAGGAACTGATGAAGCG 58.154 36.000 0.00 0.00 40.86 4.68
1556 1604 3.242381 CGCGACATGCATTTACTTGATGA 60.242 43.478 0.00 0.00 46.97 2.92
1558 1606 2.677836 ACGCGACATGCATTTACTTGAT 59.322 40.909 15.93 0.00 46.97 2.57
1596 1644 6.426025 AGCAGAAAAGCCTGAAATTGAATTTC 59.574 34.615 20.62 20.62 41.19 2.17
1682 1731 7.238486 ACCATGGCAAAATAATCAAACTGTA 57.762 32.000 13.04 0.00 0.00 2.74
1713 1764 1.004560 CTTGAAGGCGCCTCTGTCA 60.005 57.895 32.93 26.92 0.00 3.58
1714 1765 1.016653 GTCTTGAAGGCGCCTCTGTC 61.017 60.000 32.93 24.40 0.00 3.51
1715 1766 1.004440 GTCTTGAAGGCGCCTCTGT 60.004 57.895 32.93 15.66 0.00 3.41
1716 1767 0.321122 AAGTCTTGAAGGCGCCTCTG 60.321 55.000 32.93 19.43 0.00 3.35
1722 1773 3.766151 TGTATACGAAGTCTTGAAGGCG 58.234 45.455 0.00 0.00 43.93 5.52
1723 1774 6.979238 AGTATTGTATACGAAGTCTTGAAGGC 59.021 38.462 0.00 0.00 43.93 4.35
1724 1775 8.808529 CAAGTATTGTATACGAAGTCTTGAAGG 58.191 37.037 19.48 4.28 40.74 3.46
1746 1797 3.129287 CGGAATAGAAAATGCAGGCAAGT 59.871 43.478 0.00 0.00 0.00 3.16
1939 1990 4.795970 AGAGCGTTTTTGAACACTAGTG 57.204 40.909 21.44 21.44 0.00 2.74
1940 1991 8.773404 ATATAAGAGCGTTTTTGAACACTAGT 57.227 30.769 0.00 0.00 0.00 2.57
1947 1998 8.617809 GTCCCATAATATAAGAGCGTTTTTGAA 58.382 33.333 0.00 0.00 0.00 2.69
1954 2005 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2040 2091 7.301789 TCATTTTTGTGTACACATTGGTATCG 58.698 34.615 28.35 12.69 41.52 2.92
2055 2106 7.811236 AGCACTTATCAATGACTCATTTTTGTG 59.189 33.333 1.17 8.10 31.05 3.33
2145 2196 0.037975 CAAGTGCTCCAAATGTGCCC 60.038 55.000 0.00 0.00 32.45 5.36
2198 2249 5.509163 GGAGGAAGCAACGTAGCATATAGAA 60.509 44.000 0.00 0.00 36.85 2.10
2205 2256 1.295423 GGGAGGAAGCAACGTAGCA 59.705 57.895 0.00 0.00 36.85 3.49
2212 2263 3.585289 TGTAACTGTATGGGAGGAAGCAA 59.415 43.478 0.00 0.00 0.00 3.91
2219 2270 6.203530 CACATAAGCATGTAACTGTATGGGAG 59.796 42.308 0.00 0.00 43.73 4.30
2223 2274 6.609237 AGCACATAAGCATGTAACTGTATG 57.391 37.500 0.00 0.00 43.73 2.39
2228 2279 6.644347 AGTAGAAGCACATAAGCATGTAACT 58.356 36.000 0.00 0.00 43.73 2.24
2264 2315 7.448777 TGGCAAACTTTACATTCCTGTATAACA 59.551 33.333 0.00 0.00 37.68 2.41
2278 2329 5.744666 TTACTGACTGTGGCAAACTTTAC 57.255 39.130 0.00 0.00 0.00 2.01
2283 2334 9.341899 CTTTATAATTTACTGACTGTGGCAAAC 57.658 33.333 0.00 0.00 0.00 2.93
2287 2338 8.182227 GGAACTTTATAATTTACTGACTGTGGC 58.818 37.037 0.00 0.00 0.00 5.01
2291 2342 8.197988 AGCGGAACTTTATAATTTACTGACTG 57.802 34.615 0.00 0.00 0.00 3.51
2330 2383 8.779354 AGATCAACCTTGTTTATAAGTCTGAC 57.221 34.615 0.00 0.00 0.00 3.51
2451 2504 7.342026 AGGTCCTCTTTAAAACTTCAACAACAT 59.658 33.333 0.00 0.00 0.00 2.71
2499 2552 1.081840 GCAGCAAACAGAAGGTCGC 60.082 57.895 0.00 0.00 0.00 5.19
2798 2851 3.062639 GTCAGGCATGACGATGTTTGTAG 59.937 47.826 16.59 0.00 46.01 2.74
2801 2854 2.532531 GTCAGGCATGACGATGTTTG 57.467 50.000 16.59 0.00 46.01 2.93
2856 2909 2.677836 TGAAGCCGCATCAAGTAATGTC 59.322 45.455 0.00 0.00 0.00 3.06
3204 3273 2.671070 CGTGGCCTTTTTGCATACTTCC 60.671 50.000 3.32 0.00 0.00 3.46
3280 3353 2.205022 AGCAACTGCAAAGGCTATCA 57.795 45.000 4.22 0.00 45.16 2.15
3307 3380 5.039333 GCCAAGCACAAGAATATCATCAAC 58.961 41.667 0.00 0.00 0.00 3.18
3379 3453 0.750911 GCTAGCTCAGCCTGCCATTT 60.751 55.000 7.70 0.00 45.23 2.32
3394 3468 4.750098 TCCAGAAAACTTCGAAACTGCTAG 59.250 41.667 0.00 0.00 34.02 3.42
3555 3629 5.009510 TGTCAATGTTGGTTGTGAACATAGG 59.990 40.000 0.00 0.00 42.04 2.57
3560 3634 4.370364 AGTGTCAATGTTGGTTGTGAAC 57.630 40.909 0.00 0.00 0.00 3.18
3763 3837 7.168637 CCAGCATTCTATCAATTGCAATGTTAC 59.831 37.037 13.82 0.00 0.00 2.50
3780 3854 6.072199 AGACCTAAAGAATTCCAGCATTCT 57.928 37.500 0.65 0.00 44.05 2.40
3801 3875 4.103153 AGGACTCAGACAAATGACCAAAGA 59.897 41.667 0.00 0.00 0.00 2.52
3829 3903 0.675633 GGCTGGCACAACAACAGAAT 59.324 50.000 0.00 0.00 38.70 2.40
3926 4000 9.860898 GAAGAACTTAAATAAACATTGCATCCT 57.139 29.630 0.00 0.00 0.00 3.24
4115 4190 1.642762 AGGAATGTCCCCAGCAAAGAT 59.357 47.619 0.00 0.00 37.19 2.40
4180 4255 7.260603 AGTCAGAAAAGAAAAACCATTCACAG 58.739 34.615 0.00 0.00 0.00 3.66
4186 4266 8.367911 GGGATTTAGTCAGAAAAGAAAAACCAT 58.632 33.333 0.00 0.00 0.00 3.55
4188 4268 7.952671 AGGGATTTAGTCAGAAAAGAAAAACC 58.047 34.615 0.00 0.00 0.00 3.27
4196 4276 5.648092 GCTTGCTAGGGATTTAGTCAGAAAA 59.352 40.000 0.00 0.00 0.00 2.29
4197 4277 5.186198 GCTTGCTAGGGATTTAGTCAGAAA 58.814 41.667 0.00 0.00 0.00 2.52
4198 4278 4.680708 CGCTTGCTAGGGATTTAGTCAGAA 60.681 45.833 6.36 0.00 36.48 3.02
4199 4279 3.181475 CGCTTGCTAGGGATTTAGTCAGA 60.181 47.826 6.36 0.00 36.48 3.27
4200 4280 3.126831 CGCTTGCTAGGGATTTAGTCAG 58.873 50.000 6.36 0.00 36.48 3.51
4201 4281 2.158957 CCGCTTGCTAGGGATTTAGTCA 60.159 50.000 13.60 0.00 36.48 3.41
4202 4282 2.484889 CCGCTTGCTAGGGATTTAGTC 58.515 52.381 13.60 0.00 36.48 2.59
4203 4283 1.475213 GCCGCTTGCTAGGGATTTAGT 60.475 52.381 13.60 0.00 36.48 2.24
4204 4284 1.230324 GCCGCTTGCTAGGGATTTAG 58.770 55.000 13.60 0.00 36.48 1.85
4205 4285 0.544223 TGCCGCTTGCTAGGGATTTA 59.456 50.000 13.60 0.00 42.00 1.40
4206 4286 0.106519 ATGCCGCTTGCTAGGGATTT 60.107 50.000 13.60 0.00 42.00 2.17
4207 4287 0.106519 AATGCCGCTTGCTAGGGATT 60.107 50.000 13.60 7.39 42.51 3.01
4278 4364 2.103373 CACTCAGTTGGCTAGAGGCTA 58.897 52.381 4.59 0.00 41.69 3.93
4279 4365 0.901124 CACTCAGTTGGCTAGAGGCT 59.099 55.000 4.59 0.00 41.69 4.58
4319 4418 3.222603 GAGTGAAACCACCAAAGTCCAT 58.777 45.455 0.00 0.00 37.80 3.41
4320 4419 2.650322 GAGTGAAACCACCAAAGTCCA 58.350 47.619 0.00 0.00 37.80 4.02
4321 4420 1.954382 GGAGTGAAACCACCAAAGTCC 59.046 52.381 0.00 0.00 37.80 3.85
4322 4421 1.954382 GGGAGTGAAACCACCAAAGTC 59.046 52.381 0.00 0.00 37.80 3.01
4323 4422 1.569072 AGGGAGTGAAACCACCAAAGT 59.431 47.619 0.00 0.00 37.80 2.66
4324 4423 2.362077 CAAGGGAGTGAAACCACCAAAG 59.638 50.000 0.00 0.00 37.80 2.77
4326 4425 1.286553 ACAAGGGAGTGAAACCACCAA 59.713 47.619 0.00 0.00 37.80 3.67
4327 4426 0.923358 ACAAGGGAGTGAAACCACCA 59.077 50.000 0.00 0.00 37.80 4.17
4328 4427 2.067365 AACAAGGGAGTGAAACCACC 57.933 50.000 0.00 0.00 37.80 4.61
4343 4445 8.200792 ACCACAAATCTGTAGCAATTTAAACAA 58.799 29.630 0.00 0.00 33.22 2.83
4522 4626 7.335422 CCTGTGTTTAAGTATGAGCAGATTTCT 59.665 37.037 0.00 0.00 0.00 2.52
4530 4634 6.927294 AATAGCCTGTGTTTAAGTATGAGC 57.073 37.500 0.00 0.00 0.00 4.26
4626 4730 4.299978 GAGTATTTATCTCCACGGCTGAC 58.700 47.826 0.00 0.00 0.00 3.51
4750 4854 0.188587 AGGCTCCCTCCGATGTATGA 59.811 55.000 0.00 0.00 0.00 2.15
4895 4999 5.448654 AGGATGGCATTTTATCTGTAGCAA 58.551 37.500 0.00 0.00 0.00 3.91
4911 5015 6.705863 ATCAATGTTTTCTTAGAGGATGGC 57.294 37.500 0.00 0.00 0.00 4.40
4933 5037 2.957402 TCTCTGCACTGGGACAAAAT 57.043 45.000 0.00 0.00 38.70 1.82
4974 5078 8.726068 TCAATGTACCACTGTTATTACACAATG 58.274 33.333 0.00 0.00 0.00 2.82
4975 5079 8.856153 TCAATGTACCACTGTTATTACACAAT 57.144 30.769 0.00 0.00 0.00 2.71
4976 5080 8.856153 ATCAATGTACCACTGTTATTACACAA 57.144 30.769 0.00 0.00 0.00 3.33
4997 5101 9.060347 GGATAATCAAGACTTTCAGCATATCAA 57.940 33.333 0.00 0.00 0.00 2.57
5041 5145 2.613026 TGCTACGGTGTTCCCATATG 57.387 50.000 0.00 0.00 0.00 1.78
5148 5252 0.534203 TTGAGGTTTCCACGTGCTCC 60.534 55.000 10.91 9.04 0.00 4.70
5254 5358 8.005976 TGTTTTGGTAAAAGGTAAGGGTAAGAT 58.994 33.333 0.00 0.00 0.00 2.40
5361 5472 2.872245 GTGCTGTGCTAGACTGAAACAA 59.128 45.455 0.00 0.00 0.00 2.83
5382 5493 4.158764 CCTCTGTACTGTAGGAAGACCAAG 59.841 50.000 10.65 0.00 38.94 3.61
5399 5523 3.935203 CTCGCAACAATTATCACCTCTGT 59.065 43.478 0.00 0.00 0.00 3.41
5424 5555 9.578439 CATATGACGATGTATTCACTGTATGAT 57.422 33.333 0.00 0.00 37.11 2.45
5483 5614 2.489971 TGTTACCAGAAAAGCACGAGG 58.510 47.619 0.00 0.00 0.00 4.63
5484 5615 4.545823 TTTGTTACCAGAAAAGCACGAG 57.454 40.909 0.00 0.00 0.00 4.18
5485 5616 5.508200 AATTTGTTACCAGAAAAGCACGA 57.492 34.783 0.00 0.00 0.00 4.35
5486 5617 6.129561 CGTAAATTTGTTACCAGAAAAGCACG 60.130 38.462 0.00 0.00 0.00 5.34
5487 5618 6.913673 TCGTAAATTTGTTACCAGAAAAGCAC 59.086 34.615 0.00 0.00 0.00 4.40
5488 5619 6.913673 GTCGTAAATTTGTTACCAGAAAAGCA 59.086 34.615 0.00 0.00 0.00 3.91
5489 5620 6.913673 TGTCGTAAATTTGTTACCAGAAAAGC 59.086 34.615 0.00 0.00 0.00 3.51
5490 5621 8.844441 TTGTCGTAAATTTGTTACCAGAAAAG 57.156 30.769 0.00 0.00 0.00 2.27
5492 5623 9.881529 GTATTGTCGTAAATTTGTTACCAGAAA 57.118 29.630 0.00 0.00 0.00 2.52
5493 5624 8.505625 GGTATTGTCGTAAATTTGTTACCAGAA 58.494 33.333 0.00 0.00 0.00 3.02
5494 5625 7.119553 GGGTATTGTCGTAAATTTGTTACCAGA 59.880 37.037 0.00 0.00 0.00 3.86
5495 5626 7.245604 GGGTATTGTCGTAAATTTGTTACCAG 58.754 38.462 0.00 0.00 0.00 4.00
5496 5627 6.150809 GGGGTATTGTCGTAAATTTGTTACCA 59.849 38.462 0.00 0.00 0.00 3.25
5497 5628 6.375174 AGGGGTATTGTCGTAAATTTGTTACC 59.625 38.462 0.00 2.14 0.00 2.85
5498 5629 7.381766 AGGGGTATTGTCGTAAATTTGTTAC 57.618 36.000 0.00 0.00 0.00 2.50
5499 5630 6.598850 GGAGGGGTATTGTCGTAAATTTGTTA 59.401 38.462 0.00 0.00 0.00 2.41
5500 5631 5.416639 GGAGGGGTATTGTCGTAAATTTGTT 59.583 40.000 0.00 0.00 0.00 2.83
5501 5632 4.945543 GGAGGGGTATTGTCGTAAATTTGT 59.054 41.667 0.00 0.00 0.00 2.83
5502 5633 4.034742 CGGAGGGGTATTGTCGTAAATTTG 59.965 45.833 0.00 0.00 0.00 2.32
5503 5634 4.193865 CGGAGGGGTATTGTCGTAAATTT 58.806 43.478 0.00 0.00 0.00 1.82
5504 5635 3.800531 CGGAGGGGTATTGTCGTAAATT 58.199 45.455 0.00 0.00 0.00 1.82
5505 5636 3.464111 CGGAGGGGTATTGTCGTAAAT 57.536 47.619 0.00 0.00 0.00 1.40
5506 5637 2.965572 CGGAGGGGTATTGTCGTAAA 57.034 50.000 0.00 0.00 0.00 2.01
5521 5652 2.113860 TCATTTTTGCTCTCCCGGAG 57.886 50.000 8.30 8.30 44.49 4.63
5522 5653 2.806945 ATCATTTTTGCTCTCCCGGA 57.193 45.000 0.73 0.00 0.00 5.14
5523 5654 4.794003 GCATAATCATTTTTGCTCTCCCGG 60.794 45.833 0.00 0.00 36.99 5.73
5524 5655 4.037208 AGCATAATCATTTTTGCTCTCCCG 59.963 41.667 2.44 0.00 43.80 5.14
5525 5656 5.526506 AGCATAATCATTTTTGCTCTCCC 57.473 39.130 2.44 0.00 43.80 4.30
5628 5762 3.269381 TGAGAAATTGGCCAGTATCCCTT 59.731 43.478 5.11 0.00 0.00 3.95
5654 5788 3.633418 ACTAGATTGGCTTAGTCCTCGT 58.367 45.455 0.00 0.00 0.00 4.18
5691 5825 4.334759 CCGTTCGAGTAGTTCTTCCTATGA 59.665 45.833 0.00 0.00 0.00 2.15
5702 5836 1.402259 CAGAGATGCCGTTCGAGTAGT 59.598 52.381 0.00 0.00 0.00 2.73
5734 5868 2.169769 GACGATGACCATTTACAGGGGA 59.830 50.000 0.00 0.00 0.00 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.