Multiple sequence alignment - TraesCS3D01G155100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G155100 chr3D 100.000 3475 0 0 1 3475 121963875 121960401 0.000000e+00 6418.0
1 TraesCS3D01G155100 chr3D 77.904 353 55 11 1 332 575859286 575858936 8.540000e-47 198.0
2 TraesCS3D01G155100 chr3D 75.234 428 78 16 759 1182 121538451 121538048 1.110000e-40 178.0
3 TraesCS3D01G155100 chr3D 100.000 88 0 0 3808 3895 121960068 121959981 3.110000e-36 163.0
4 TraesCS3D01G155100 chr3A 95.384 3033 66 26 498 3475 128160687 128157674 0.000000e+00 4758.0
5 TraesCS3D01G155100 chr3B 93.410 3035 99 28 498 3475 173387712 173384722 0.000000e+00 4403.0
6 TraesCS3D01G155100 chr3B 78.022 273 56 4 175 444 100698341 100698070 6.690000e-38 169.0
7 TraesCS3D01G155100 chr3B 75.806 372 63 18 759 1116 173110897 173110539 3.110000e-36 163.0
8 TraesCS3D01G155100 chr3B 84.694 98 12 3 173 267 823146405 823146502 1.150000e-15 95.3
9 TraesCS3D01G155100 chr4D 85.523 2321 190 56 1203 3470 22580030 22582257 0.000000e+00 2290.0
10 TraesCS3D01G155100 chr4D 83.299 479 47 12 594 1059 22579585 22580043 1.010000e-110 411.0
11 TraesCS3D01G155100 chr4D 98.864 88 1 0 3808 3895 222531882 222531969 1.450000e-34 158.0
12 TraesCS3D01G155100 chr4D 98.851 87 1 0 3808 3894 379784850 379784936 5.210000e-34 156.0
13 TraesCS3D01G155100 chr4D 97.727 88 2 0 3808 3895 222545191 222545278 6.740000e-33 152.0
14 TraesCS3D01G155100 chr4D 97.727 88 2 0 3808 3895 222606241 222606328 6.740000e-33 152.0
15 TraesCS3D01G155100 chr4D 97.727 88 2 0 3808 3895 324887620 324887707 6.740000e-33 152.0
16 TraesCS3D01G155100 chr4B 82.870 648 67 23 1207 1827 34565530 34566160 3.420000e-150 542.0
17 TraesCS3D01G155100 chr4B 89.975 399 38 2 2519 2915 34568530 34568928 7.460000e-142 514.0
18 TraesCS3D01G155100 chr4B 86.165 412 26 11 2958 3361 34568923 34569311 2.160000e-112 416.0
19 TraesCS3D01G155100 chr4B 85.764 288 27 10 1830 2107 34567845 34568128 3.810000e-75 292.0
20 TraesCS3D01G155100 chr4A 84.681 470 44 8 3007 3473 579525776 579525332 9.930000e-121 444.0
21 TraesCS3D01G155100 chr4A 91.589 214 15 2 2794 3005 579526073 579525861 3.810000e-75 292.0
22 TraesCS3D01G155100 chr7A 80.728 467 50 16 1 445 134958714 134958266 1.040000e-85 327.0
23 TraesCS3D01G155100 chr1D 78.187 353 50 12 1 332 11742002 11741656 2.370000e-47 200.0
24 TraesCS3D01G155100 chr1D 97.727 88 2 0 3808 3895 317900614 317900701 6.740000e-33 152.0
25 TraesCS3D01G155100 chr6A 97.727 88 2 0 3808 3895 492446218 492446131 6.740000e-33 152.0
26 TraesCS3D01G155100 chr6A 78.894 199 31 5 70 257 119194001 119194199 1.470000e-24 124.0
27 TraesCS3D01G155100 chr5D 97.727 88 2 0 3808 3895 128191033 128190946 6.740000e-33 152.0
28 TraesCS3D01G155100 chr5D 97.727 88 2 0 3808 3895 450481621 450481708 6.740000e-33 152.0
29 TraesCS3D01G155100 chr5D 93.617 47 3 0 225 271 80306332 80306286 1.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G155100 chr3D 121959981 121963875 3894 True 3290.5 6418 100.0000 1 3895 2 chr3D.!!$R3 3894
1 TraesCS3D01G155100 chr3A 128157674 128160687 3013 True 4758.0 4758 95.3840 498 3475 1 chr3A.!!$R1 2977
2 TraesCS3D01G155100 chr3B 173384722 173387712 2990 True 4403.0 4403 93.4100 498 3475 1 chr3B.!!$R3 2977
3 TraesCS3D01G155100 chr4D 22579585 22582257 2672 False 1350.5 2290 84.4110 594 3470 2 chr4D.!!$F6 2876
4 TraesCS3D01G155100 chr4B 34565530 34569311 3781 False 441.0 542 86.1935 1207 3361 4 chr4B.!!$F1 2154
5 TraesCS3D01G155100 chr4A 579525332 579526073 741 True 368.0 444 88.1350 2794 3473 2 chr4A.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 448 0.100503 GACTGTTTGCCGCAGTTTGT 59.899 50.000 6.41 0.0 45.99 2.83 F
448 449 0.100503 ACTGTTTGCCGCAGTTTGTC 59.899 50.000 0.00 0.0 43.87 3.18 F
490 491 0.101759 GCAGTTAGCGTGGTATCGGA 59.898 55.000 0.00 0.0 0.00 4.55 F
1397 1486 0.678048 GATGGCAGTGAGGGTGTTCC 60.678 60.000 0.00 0.0 0.00 3.62 F
1573 1665 2.101249 ACACGTCGGGAACTTGAGTTTA 59.899 45.455 0.00 0.0 38.56 2.01 F
1894 3668 3.160269 CAGGAAGAACAGGCAGGAAAAT 58.840 45.455 0.00 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1287 1328 0.248417 CATCCTCGCTCTCACTGTCG 60.248 60.000 0.00 0.0 0.0 4.35 R
1377 1466 0.326264 GAACACCCTCACTGCCATCT 59.674 55.000 0.00 0.0 0.0 2.90 R
1472 1561 1.153349 GAACGCCCCTCCATCTGAC 60.153 63.158 0.00 0.0 0.0 3.51 R
2798 4651 2.093973 ACAGAACTCAAGAGCATACCGG 60.094 50.000 0.00 0.0 0.0 5.28 R
2852 4705 9.730705 TCCTCCTTATTCTGATATATTGCAAAG 57.269 33.333 1.71 0.0 0.0 2.77 R
3866 5809 0.108138 GTCTACCTTCCGCTGCATGT 60.108 55.000 0.00 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.950860 AAAAATGTCCCCATGTTCCTAAAT 57.049 33.333 0.00 0.00 27.91 1.40
25 26 6.950860 AAAATGTCCCCATGTTCCTAAATT 57.049 33.333 0.00 0.00 0.00 1.82
26 27 6.950860 AAATGTCCCCATGTTCCTAAATTT 57.049 33.333 0.00 0.00 0.00 1.82
27 28 5.937975 ATGTCCCCATGTTCCTAAATTTG 57.062 39.130 0.00 0.00 0.00 2.32
28 29 4.746466 TGTCCCCATGTTCCTAAATTTGT 58.254 39.130 0.00 0.00 0.00 2.83
29 30 4.526262 TGTCCCCATGTTCCTAAATTTGTG 59.474 41.667 0.00 0.00 0.00 3.33
30 31 4.526650 GTCCCCATGTTCCTAAATTTGTGT 59.473 41.667 0.00 0.00 0.00 3.72
31 32 5.011635 GTCCCCATGTTCCTAAATTTGTGTT 59.988 40.000 0.00 0.00 0.00 3.32
32 33 5.245075 TCCCCATGTTCCTAAATTTGTGTTC 59.755 40.000 0.00 0.00 0.00 3.18
33 34 5.011533 CCCCATGTTCCTAAATTTGTGTTCA 59.988 40.000 0.00 0.00 0.00 3.18
34 35 6.463614 CCCCATGTTCCTAAATTTGTGTTCAA 60.464 38.462 0.00 0.00 0.00 2.69
35 36 6.989169 CCCATGTTCCTAAATTTGTGTTCAAA 59.011 34.615 0.00 0.00 45.71 2.69
36 37 7.497249 CCCATGTTCCTAAATTTGTGTTCAAAA 59.503 33.333 0.00 0.00 44.97 2.44
37 38 8.887717 CCATGTTCCTAAATTTGTGTTCAAAAA 58.112 29.630 0.00 0.00 44.97 1.94
50 51 9.443283 TTTGTGTTCAAAAATTTTCAAACTGTG 57.557 25.926 20.30 9.04 40.08 3.66
51 52 8.147642 TGTGTTCAAAAATTTTCAAACTGTGT 57.852 26.923 20.30 0.00 0.00 3.72
52 53 8.066595 TGTGTTCAAAAATTTTCAAACTGTGTG 58.933 29.630 20.30 7.96 0.00 3.82
53 54 7.059374 GTGTTCAAAAATTTTCAAACTGTGTGC 59.941 33.333 20.30 7.48 0.00 4.57
54 55 6.791887 TCAAAAATTTTCAAACTGTGTGCA 57.208 29.167 3.41 0.00 0.00 4.57
56 57 6.648310 TCAAAAATTTTCAAACTGTGTGCAGA 59.352 30.769 3.41 0.00 45.28 4.26
57 58 7.333921 TCAAAAATTTTCAAACTGTGTGCAGAT 59.666 29.630 3.41 0.00 45.28 2.90
58 59 6.592798 AAATTTTCAAACTGTGTGCAGATG 57.407 33.333 1.30 1.18 45.28 2.90
59 60 4.717233 TTTTCAAACTGTGTGCAGATGT 57.283 36.364 1.30 0.00 45.28 3.06
60 61 5.826601 TTTTCAAACTGTGTGCAGATGTA 57.173 34.783 1.30 0.00 45.28 2.29
61 62 5.826601 TTTCAAACTGTGTGCAGATGTAA 57.173 34.783 1.30 0.00 45.28 2.41
62 63 5.826601 TTCAAACTGTGTGCAGATGTAAA 57.173 34.783 1.30 0.00 45.28 2.01
63 64 5.826601 TCAAACTGTGTGCAGATGTAAAA 57.173 34.783 1.30 0.00 45.28 1.52
64 65 5.577835 TCAAACTGTGTGCAGATGTAAAAC 58.422 37.500 1.30 0.00 45.28 2.43
65 66 5.124617 TCAAACTGTGTGCAGATGTAAAACA 59.875 36.000 1.30 0.00 45.28 2.83
66 67 5.772825 AACTGTGTGCAGATGTAAAACAT 57.227 34.783 1.30 0.00 45.28 2.71
67 68 5.772825 ACTGTGTGCAGATGTAAAACATT 57.227 34.783 1.30 0.00 45.28 2.71
68 69 6.147864 ACTGTGTGCAGATGTAAAACATTT 57.852 33.333 1.30 0.00 45.28 2.32
69 70 6.572519 ACTGTGTGCAGATGTAAAACATTTT 58.427 32.000 1.30 0.00 45.28 1.82
70 71 7.041107 ACTGTGTGCAGATGTAAAACATTTTT 58.959 30.769 1.30 0.00 45.28 1.94
94 95 8.994429 TTTTTCTTTTACAAGCAATGTTCAGA 57.006 26.923 0.21 0.00 43.63 3.27
95 96 8.994429 TTTTCTTTTACAAGCAATGTTCAGAA 57.006 26.923 0.21 4.33 43.63 3.02
96 97 8.994429 TTTCTTTTACAAGCAATGTTCAGAAA 57.006 26.923 13.58 13.58 43.63 2.52
97 98 7.985634 TCTTTTACAAGCAATGTTCAGAAAC 57.014 32.000 0.21 0.00 43.63 2.78
98 99 7.771183 TCTTTTACAAGCAATGTTCAGAAACT 58.229 30.769 0.21 0.00 43.63 2.66
99 100 8.250332 TCTTTTACAAGCAATGTTCAGAAACTT 58.750 29.630 0.21 0.00 43.63 2.66
100 101 8.770438 TTTTACAAGCAATGTTCAGAAACTTT 57.230 26.923 0.21 0.00 43.63 2.66
101 102 7.985634 TTACAAGCAATGTTCAGAAACTTTC 57.014 32.000 0.21 0.00 43.63 2.62
102 103 5.964758 ACAAGCAATGTTCAGAAACTTTCA 58.035 33.333 4.34 0.00 40.06 2.69
103 104 6.397272 ACAAGCAATGTTCAGAAACTTTCAA 58.603 32.000 4.34 0.00 40.06 2.69
104 105 6.873076 ACAAGCAATGTTCAGAAACTTTCAAA 59.127 30.769 4.34 0.00 40.06 2.69
105 106 7.387397 ACAAGCAATGTTCAGAAACTTTCAAAA 59.613 29.630 4.34 0.00 40.06 2.44
106 107 8.392612 CAAGCAATGTTCAGAAACTTTCAAAAT 58.607 29.630 4.34 0.00 36.30 1.82
107 108 8.134905 AGCAATGTTCAGAAACTTTCAAAATC 57.865 30.769 4.34 0.00 36.30 2.17
108 109 7.983484 AGCAATGTTCAGAAACTTTCAAAATCT 59.017 29.630 4.34 0.00 36.30 2.40
109 110 8.060090 GCAATGTTCAGAAACTTTCAAAATCTG 58.940 33.333 4.34 0.00 39.04 2.90
110 111 8.545420 CAATGTTCAGAAACTTTCAAAATCTGG 58.455 33.333 4.34 0.00 38.39 3.86
111 112 7.169158 TGTTCAGAAACTTTCAAAATCTGGT 57.831 32.000 4.34 0.00 38.39 4.00
112 113 7.035004 TGTTCAGAAACTTTCAAAATCTGGTG 58.965 34.615 4.34 0.00 38.39 4.17
113 114 7.093988 TGTTCAGAAACTTTCAAAATCTGGTGA 60.094 33.333 4.34 0.00 38.39 4.02
114 115 7.403312 TCAGAAACTTTCAAAATCTGGTGAA 57.597 32.000 4.34 0.00 38.39 3.18
115 116 7.835822 TCAGAAACTTTCAAAATCTGGTGAAA 58.164 30.769 4.34 0.00 40.52 2.69
116 117 8.477256 TCAGAAACTTTCAAAATCTGGTGAAAT 58.523 29.630 4.34 0.00 41.57 2.17
117 118 9.101655 CAGAAACTTTCAAAATCTGGTGAAATT 57.898 29.630 4.34 0.00 41.57 1.82
118 119 9.317936 AGAAACTTTCAAAATCTGGTGAAATTC 57.682 29.630 4.34 2.90 41.57 2.17
119 120 9.317936 GAAACTTTCAAAATCTGGTGAAATTCT 57.682 29.630 0.00 0.00 41.57 2.40
132 133 9.312904 TCTGGTGAAATTCTAAATTTTGATCCT 57.687 29.630 3.15 0.00 0.00 3.24
133 134 9.362539 CTGGTGAAATTCTAAATTTTGATCCTG 57.637 33.333 3.15 2.02 0.00 3.86
134 135 7.818930 TGGTGAAATTCTAAATTTTGATCCTGC 59.181 33.333 3.15 0.00 0.00 4.85
135 136 7.818930 GGTGAAATTCTAAATTTTGATCCTGCA 59.181 33.333 3.15 0.00 0.00 4.41
136 137 9.206870 GTGAAATTCTAAATTTTGATCCTGCAA 57.793 29.630 3.15 0.00 0.00 4.08
137 138 9.947433 TGAAATTCTAAATTTTGATCCTGCAAT 57.053 25.926 3.15 0.00 0.00 3.56
139 140 8.953368 AATTCTAAATTTTGATCCTGCAATCC 57.047 30.769 3.15 0.00 0.00 3.01
140 141 7.479352 TTCTAAATTTTGATCCTGCAATCCA 57.521 32.000 3.15 0.00 0.00 3.41
141 142 7.479352 TCTAAATTTTGATCCTGCAATCCAA 57.521 32.000 0.00 0.00 0.00 3.53
142 143 7.905265 TCTAAATTTTGATCCTGCAATCCAAA 58.095 30.769 0.00 1.41 0.00 3.28
143 144 8.373981 TCTAAATTTTGATCCTGCAATCCAAAA 58.626 29.630 14.19 14.19 0.00 2.44
144 145 7.820578 AAATTTTGATCCTGCAATCCAAAAA 57.179 28.000 15.18 8.58 0.00 1.94
145 146 6.806388 ATTTTGATCCTGCAATCCAAAAAC 57.194 33.333 15.18 0.00 0.00 2.43
146 147 5.549742 TTTGATCCTGCAATCCAAAAACT 57.450 34.783 0.00 0.00 0.00 2.66
147 148 6.662865 TTTGATCCTGCAATCCAAAAACTA 57.337 33.333 0.00 0.00 0.00 2.24
148 149 6.662865 TTGATCCTGCAATCCAAAAACTAA 57.337 33.333 0.00 0.00 0.00 2.24
149 150 6.855763 TGATCCTGCAATCCAAAAACTAAT 57.144 33.333 0.00 0.00 0.00 1.73
150 151 7.243604 TGATCCTGCAATCCAAAAACTAATT 57.756 32.000 0.00 0.00 0.00 1.40
151 152 7.678837 TGATCCTGCAATCCAAAAACTAATTT 58.321 30.769 0.00 0.00 0.00 1.82
152 153 8.811017 TGATCCTGCAATCCAAAAACTAATTTA 58.189 29.630 0.00 0.00 0.00 1.40
153 154 9.651913 GATCCTGCAATCCAAAAACTAATTTAA 57.348 29.630 0.00 0.00 0.00 1.52
154 155 9.657419 ATCCTGCAATCCAAAAACTAATTTAAG 57.343 29.630 0.00 0.00 0.00 1.85
155 156 8.865090 TCCTGCAATCCAAAAACTAATTTAAGA 58.135 29.630 0.00 0.00 0.00 2.10
156 157 9.657419 CCTGCAATCCAAAAACTAATTTAAGAT 57.343 29.630 0.00 0.00 0.00 2.40
218 219 9.988350 AAAATTTGAACAATCTATACGCTACAG 57.012 29.630 0.00 0.00 0.00 2.74
219 220 8.718102 AATTTGAACAATCTATACGCTACAGT 57.282 30.769 0.00 0.00 0.00 3.55
220 221 9.811995 AATTTGAACAATCTATACGCTACAGTA 57.188 29.630 0.00 0.00 0.00 2.74
221 222 9.811995 ATTTGAACAATCTATACGCTACAGTAA 57.188 29.630 0.00 0.00 0.00 2.24
222 223 8.851960 TTGAACAATCTATACGCTACAGTAAG 57.148 34.615 0.00 0.00 0.00 2.34
223 224 7.993101 TGAACAATCTATACGCTACAGTAAGT 58.007 34.615 0.00 0.00 0.00 2.24
224 225 9.112725 TGAACAATCTATACGCTACAGTAAGTA 57.887 33.333 0.00 0.00 0.00 2.24
235 236 5.910637 CTACAGTAAGTAGGACGCTAGAG 57.089 47.826 0.00 0.00 45.28 2.43
236 237 4.219264 ACAGTAAGTAGGACGCTAGAGT 57.781 45.455 0.00 0.00 0.00 3.24
237 238 3.940221 ACAGTAAGTAGGACGCTAGAGTG 59.060 47.826 2.99 0.00 0.00 3.51
238 239 4.190001 CAGTAAGTAGGACGCTAGAGTGA 58.810 47.826 2.99 0.00 0.00 3.41
239 240 4.634883 CAGTAAGTAGGACGCTAGAGTGAA 59.365 45.833 2.99 0.00 0.00 3.18
240 241 5.297278 CAGTAAGTAGGACGCTAGAGTGAAT 59.703 44.000 2.99 0.00 0.00 2.57
241 242 6.482641 CAGTAAGTAGGACGCTAGAGTGAATA 59.517 42.308 2.99 0.00 0.00 1.75
242 243 7.173562 CAGTAAGTAGGACGCTAGAGTGAATAT 59.826 40.741 2.99 0.00 0.00 1.28
243 244 6.563222 AAGTAGGACGCTAGAGTGAATATC 57.437 41.667 2.99 0.00 0.00 1.63
244 245 5.622180 AGTAGGACGCTAGAGTGAATATCA 58.378 41.667 2.99 0.00 0.00 2.15
266 267 7.706281 TCACGTTATAGTTAAAAACCGTTCA 57.294 32.000 0.00 0.00 0.00 3.18
267 268 8.309163 TCACGTTATAGTTAAAAACCGTTCAT 57.691 30.769 0.00 0.00 0.00 2.57
268 269 8.222433 TCACGTTATAGTTAAAAACCGTTCATG 58.778 33.333 0.00 0.00 0.00 3.07
269 270 7.006742 CACGTTATAGTTAAAAACCGTTCATGC 59.993 37.037 0.00 0.00 0.00 4.06
270 271 7.095102 ACGTTATAGTTAAAAACCGTTCATGCT 60.095 33.333 0.00 0.00 0.00 3.79
271 272 8.382130 CGTTATAGTTAAAAACCGTTCATGCTA 58.618 33.333 0.00 0.00 0.00 3.49
276 277 7.532571 AGTTAAAAACCGTTCATGCTATTACC 58.467 34.615 0.00 0.00 0.00 2.85
277 278 7.392393 AGTTAAAAACCGTTCATGCTATTACCT 59.608 33.333 0.00 0.00 0.00 3.08
278 279 5.560966 AAAACCGTTCATGCTATTACCTG 57.439 39.130 0.00 0.00 0.00 4.00
279 280 3.906720 ACCGTTCATGCTATTACCTGT 57.093 42.857 0.00 0.00 0.00 4.00
280 281 3.793559 ACCGTTCATGCTATTACCTGTC 58.206 45.455 0.00 0.00 0.00 3.51
281 282 3.196901 ACCGTTCATGCTATTACCTGTCA 59.803 43.478 0.00 0.00 0.00 3.58
282 283 3.555956 CCGTTCATGCTATTACCTGTCAC 59.444 47.826 0.00 0.00 0.00 3.67
283 284 3.555956 CGTTCATGCTATTACCTGTCACC 59.444 47.826 0.00 0.00 0.00 4.02
284 285 4.513442 GTTCATGCTATTACCTGTCACCA 58.487 43.478 0.00 0.00 0.00 4.17
285 286 4.137116 TCATGCTATTACCTGTCACCAC 57.863 45.455 0.00 0.00 0.00 4.16
286 287 3.118408 TCATGCTATTACCTGTCACCACC 60.118 47.826 0.00 0.00 0.00 4.61
287 288 2.546899 TGCTATTACCTGTCACCACCT 58.453 47.619 0.00 0.00 0.00 4.00
288 289 2.236146 TGCTATTACCTGTCACCACCTG 59.764 50.000 0.00 0.00 0.00 4.00
289 290 2.236395 GCTATTACCTGTCACCACCTGT 59.764 50.000 0.00 0.00 0.00 4.00
290 291 3.449737 GCTATTACCTGTCACCACCTGTA 59.550 47.826 0.00 0.00 0.00 2.74
291 292 4.081309 GCTATTACCTGTCACCACCTGTAA 60.081 45.833 0.00 0.00 0.00 2.41
292 293 5.396436 GCTATTACCTGTCACCACCTGTAAT 60.396 44.000 0.00 0.00 34.76 1.89
293 294 6.183360 GCTATTACCTGTCACCACCTGTAATA 60.183 42.308 0.00 0.00 33.52 0.98
294 295 6.630203 ATTACCTGTCACCACCTGTAATAA 57.370 37.500 0.00 0.00 31.40 1.40
295 296 4.553330 ACCTGTCACCACCTGTAATAAG 57.447 45.455 0.00 0.00 0.00 1.73
296 297 3.263425 ACCTGTCACCACCTGTAATAAGG 59.737 47.826 0.00 0.00 43.57 2.69
309 310 6.631962 CCTGTAATAAGGTATACTGGCTAGC 58.368 44.000 6.04 6.04 32.17 3.42
310 311 6.210784 CCTGTAATAAGGTATACTGGCTAGCA 59.789 42.308 18.24 1.68 32.17 3.49
311 312 7.228314 TGTAATAAGGTATACTGGCTAGCAG 57.772 40.000 18.24 14.09 0.00 4.24
312 313 6.781014 TGTAATAAGGTATACTGGCTAGCAGT 59.219 38.462 18.24 18.84 36.74 4.40
313 314 7.946219 TGTAATAAGGTATACTGGCTAGCAGTA 59.054 37.037 18.24 20.25 39.18 2.74
314 315 6.837471 ATAAGGTATACTGGCTAGCAGTAC 57.163 41.667 21.53 15.46 37.89 2.73
315 316 3.147629 AGGTATACTGGCTAGCAGTACG 58.852 50.000 21.53 7.50 37.89 3.67
316 317 2.883386 GGTATACTGGCTAGCAGTACGT 59.117 50.000 21.53 13.52 37.89 3.57
317 318 3.304525 GGTATACTGGCTAGCAGTACGTG 60.305 52.174 21.53 6.32 37.89 4.49
318 319 1.830279 TACTGGCTAGCAGTACGTGT 58.170 50.000 18.24 6.40 34.38 4.49
319 320 0.966920 ACTGGCTAGCAGTACGTGTT 59.033 50.000 18.24 0.00 0.00 3.32
320 321 1.343465 ACTGGCTAGCAGTACGTGTTT 59.657 47.619 18.24 0.00 0.00 2.83
321 322 1.726791 CTGGCTAGCAGTACGTGTTTG 59.273 52.381 18.24 0.00 0.00 2.93
322 323 1.069513 TGGCTAGCAGTACGTGTTTGT 59.930 47.619 18.24 0.00 0.00 2.83
323 324 2.140717 GGCTAGCAGTACGTGTTTGTT 58.859 47.619 18.24 0.00 0.00 2.83
324 325 2.546789 GGCTAGCAGTACGTGTTTGTTT 59.453 45.455 18.24 0.00 0.00 2.83
325 326 3.363673 GGCTAGCAGTACGTGTTTGTTTC 60.364 47.826 18.24 0.00 0.00 2.78
326 327 3.493503 GCTAGCAGTACGTGTTTGTTTCT 59.506 43.478 10.63 0.00 0.00 2.52
327 328 3.944422 AGCAGTACGTGTTTGTTTCTG 57.056 42.857 0.00 0.00 0.00 3.02
328 329 2.031683 AGCAGTACGTGTTTGTTTCTGC 59.968 45.455 0.00 0.00 42.90 4.26
329 330 2.624766 CAGTACGTGTTTGTTTCTGCG 58.375 47.619 0.00 0.00 0.00 5.18
330 331 2.283086 CAGTACGTGTTTGTTTCTGCGA 59.717 45.455 0.00 0.00 0.00 5.10
331 332 2.283351 AGTACGTGTTTGTTTCTGCGAC 59.717 45.455 0.00 0.00 0.00 5.19
332 333 1.080298 ACGTGTTTGTTTCTGCGACA 58.920 45.000 0.00 0.00 0.00 4.35
333 334 1.668751 ACGTGTTTGTTTCTGCGACAT 59.331 42.857 0.00 0.00 0.00 3.06
334 335 2.286184 ACGTGTTTGTTTCTGCGACATC 60.286 45.455 0.00 0.00 0.00 3.06
335 336 2.298300 GTGTTTGTTTCTGCGACATCG 58.702 47.619 0.00 0.00 43.27 3.84
345 346 4.051554 CGACATCGCGAGTTCGAA 57.948 55.556 28.69 0.00 42.15 3.71
346 347 2.566997 CGACATCGCGAGTTCGAAT 58.433 52.632 28.69 3.29 42.15 3.34
347 348 0.494788 CGACATCGCGAGTTCGAATC 59.505 55.000 28.69 11.97 42.15 2.52
348 349 1.828832 GACATCGCGAGTTCGAATCT 58.171 50.000 16.66 0.00 42.15 2.40
349 350 2.599142 CGACATCGCGAGTTCGAATCTA 60.599 50.000 28.69 0.00 42.15 1.98
350 351 2.968006 GACATCGCGAGTTCGAATCTAG 59.032 50.000 16.66 2.53 42.15 2.43
351 352 2.287069 ACATCGCGAGTTCGAATCTAGG 60.287 50.000 16.66 0.00 42.15 3.02
352 353 0.661552 TCGCGAGTTCGAATCTAGGG 59.338 55.000 3.71 9.38 43.02 3.53
353 354 0.661552 CGCGAGTTCGAATCTAGGGA 59.338 55.000 0.00 0.00 43.02 4.20
354 355 1.334239 CGCGAGTTCGAATCTAGGGAG 60.334 57.143 0.00 0.00 43.02 4.30
355 356 1.600912 GCGAGTTCGAATCTAGGGAGC 60.601 57.143 0.00 0.00 43.02 4.70
356 357 1.334239 CGAGTTCGAATCTAGGGAGCG 60.334 57.143 0.00 0.00 43.02 5.03
357 358 0.386113 AGTTCGAATCTAGGGAGCGC 59.614 55.000 0.00 0.00 0.00 5.92
358 359 0.386113 GTTCGAATCTAGGGAGCGCT 59.614 55.000 11.27 11.27 0.00 5.92
359 360 1.607628 GTTCGAATCTAGGGAGCGCTA 59.392 52.381 11.50 0.00 0.00 4.26
360 361 2.201921 TCGAATCTAGGGAGCGCTAT 57.798 50.000 11.50 1.37 0.00 2.97
361 362 2.515854 TCGAATCTAGGGAGCGCTATT 58.484 47.619 11.50 4.95 0.00 1.73
362 363 3.682696 TCGAATCTAGGGAGCGCTATTA 58.317 45.455 11.50 1.99 0.00 0.98
363 364 4.270834 TCGAATCTAGGGAGCGCTATTAT 58.729 43.478 11.50 0.00 0.00 1.28
364 365 4.705507 TCGAATCTAGGGAGCGCTATTATT 59.294 41.667 11.50 4.70 0.00 1.40
365 366 5.185249 TCGAATCTAGGGAGCGCTATTATTT 59.815 40.000 11.50 0.00 0.00 1.40
366 367 5.869888 CGAATCTAGGGAGCGCTATTATTTT 59.130 40.000 11.50 0.00 0.00 1.82
367 368 6.369065 CGAATCTAGGGAGCGCTATTATTTTT 59.631 38.462 11.50 0.00 0.00 1.94
385 386 3.435105 TTTTGCGATTTTCTGTGCTGT 57.565 38.095 0.00 0.00 0.00 4.40
386 387 4.560136 TTTTGCGATTTTCTGTGCTGTA 57.440 36.364 0.00 0.00 0.00 2.74
387 388 4.764679 TTTGCGATTTTCTGTGCTGTAT 57.235 36.364 0.00 0.00 0.00 2.29
388 389 4.764679 TTGCGATTTTCTGTGCTGTATT 57.235 36.364 0.00 0.00 0.00 1.89
389 390 4.764679 TGCGATTTTCTGTGCTGTATTT 57.235 36.364 0.00 0.00 0.00 1.40
390 391 4.475028 TGCGATTTTCTGTGCTGTATTTG 58.525 39.130 0.00 0.00 0.00 2.32
391 392 3.853671 GCGATTTTCTGTGCTGTATTTGG 59.146 43.478 0.00 0.00 0.00 3.28
392 393 4.414852 CGATTTTCTGTGCTGTATTTGGG 58.585 43.478 0.00 0.00 0.00 4.12
393 394 3.658757 TTTTCTGTGCTGTATTTGGGC 57.341 42.857 0.00 0.00 0.00 5.36
394 395 2.584835 TTCTGTGCTGTATTTGGGCT 57.415 45.000 0.00 0.00 0.00 5.19
395 396 1.825090 TCTGTGCTGTATTTGGGCTG 58.175 50.000 0.00 0.00 0.00 4.85
396 397 0.813184 CTGTGCTGTATTTGGGCTGG 59.187 55.000 0.00 0.00 0.00 4.85
397 398 1.250154 TGTGCTGTATTTGGGCTGGC 61.250 55.000 0.00 0.00 0.00 4.85
398 399 1.682005 TGCTGTATTTGGGCTGGCC 60.682 57.895 14.23 14.23 0.00 5.36
431 432 4.363990 CTGTGCGTCAGGCCGACT 62.364 66.667 20.38 0.00 42.98 4.18
442 443 4.389576 GCCGACTGTTTGCCGCAG 62.390 66.667 0.00 0.00 39.67 5.18
444 445 2.542907 CCGACTGTTTGCCGCAGTT 61.543 57.895 6.41 0.00 45.99 3.16
445 446 1.355210 CGACTGTTTGCCGCAGTTT 59.645 52.632 6.41 0.00 45.99 2.66
446 447 0.929824 CGACTGTTTGCCGCAGTTTG 60.930 55.000 6.41 0.73 45.99 2.93
447 448 0.100503 GACTGTTTGCCGCAGTTTGT 59.899 50.000 6.41 0.00 45.99 2.83
448 449 0.100503 ACTGTTTGCCGCAGTTTGTC 59.899 50.000 0.00 0.00 43.87 3.18
449 450 0.381801 CTGTTTGCCGCAGTTTGTCT 59.618 50.000 0.00 0.00 0.00 3.41
450 451 1.601903 CTGTTTGCCGCAGTTTGTCTA 59.398 47.619 0.00 0.00 0.00 2.59
451 452 2.017782 TGTTTGCCGCAGTTTGTCTAA 58.982 42.857 0.00 0.00 0.00 2.10
452 453 2.423892 TGTTTGCCGCAGTTTGTCTAAA 59.576 40.909 0.00 0.00 0.00 1.85
453 454 3.119459 TGTTTGCCGCAGTTTGTCTAAAA 60.119 39.130 0.00 0.00 0.00 1.52
454 455 3.784701 TTGCCGCAGTTTGTCTAAAAA 57.215 38.095 0.00 0.00 0.00 1.94
474 475 2.208326 AAAAAGACTGTTTGCCGCAG 57.792 45.000 0.00 0.00 39.67 5.18
476 477 1.102978 AAAGACTGTTTGCCGCAGTT 58.897 45.000 6.41 0.00 45.99 3.16
477 478 1.961793 AAGACTGTTTGCCGCAGTTA 58.038 45.000 6.41 0.00 45.99 2.24
478 479 1.512926 AGACTGTTTGCCGCAGTTAG 58.487 50.000 6.41 0.00 45.99 2.34
479 480 0.110192 GACTGTTTGCCGCAGTTAGC 60.110 55.000 6.41 0.00 45.99 3.09
489 490 2.589890 GCAGTTAGCGTGGTATCGG 58.410 57.895 0.00 0.00 0.00 4.18
490 491 0.101759 GCAGTTAGCGTGGTATCGGA 59.898 55.000 0.00 0.00 0.00 4.55
491 492 1.836383 CAGTTAGCGTGGTATCGGAC 58.164 55.000 0.00 0.00 0.00 4.79
587 588 3.087031 ACGAGAAGTTGATCCGTCCTAA 58.913 45.455 0.00 0.00 0.00 2.69
788 804 3.432051 GAGATGGGCGTCGTGGAGG 62.432 68.421 0.00 0.00 0.00 4.30
978 1016 2.119457 GGAAACAAGCAAAAGTCAGCG 58.881 47.619 0.00 0.00 35.48 5.18
1047 1085 2.812619 CGAGGAAGAGGGGATGGCC 61.813 68.421 0.00 0.00 0.00 5.36
1165 1203 3.258372 TGTTGCAGACGAGATTAAGGACT 59.742 43.478 0.00 0.00 0.00 3.85
1185 1223 2.584608 GATGGAGGTGGTGGACGG 59.415 66.667 0.00 0.00 0.00 4.79
1201 1239 2.355115 GGGACCATGGGAGCGTTT 59.645 61.111 18.09 0.00 0.00 3.60
1299 1340 2.189342 GTAATCAGCGACAGTGAGAGC 58.811 52.381 0.00 0.00 0.00 4.09
1377 1466 3.291584 AGTCAGTGACAGTGAGAGTGAA 58.708 45.455 24.73 0.00 34.60 3.18
1397 1486 0.678048 GATGGCAGTGAGGGTGTTCC 60.678 60.000 0.00 0.00 0.00 3.62
1472 1561 5.178252 GTGAGGATGACGATGGTGAATTATG 59.822 44.000 0.00 0.00 0.00 1.90
1573 1665 2.101249 ACACGTCGGGAACTTGAGTTTA 59.899 45.455 0.00 0.00 38.56 2.01
1627 1719 8.892530 AGGATGATTCAGAAGAGGATGATAATT 58.107 33.333 0.00 0.00 0.00 1.40
1796 1888 6.909076 AGAATAAGGATTGGAAGATTGAGCT 58.091 36.000 0.00 0.00 0.00 4.09
1894 3668 3.160269 CAGGAAGAACAGGCAGGAAAAT 58.840 45.455 0.00 0.00 0.00 1.82
1895 3669 3.575687 CAGGAAGAACAGGCAGGAAAATT 59.424 43.478 0.00 0.00 0.00 1.82
2475 4271 4.060205 GCTCAGTTTTTAGGTACCGTTCA 58.940 43.478 6.18 0.00 0.00 3.18
2668 4520 7.041107 AGAGATCAAGAACTAGCATTGAAGTC 58.959 38.462 8.43 8.18 36.59 3.01
2720 4573 3.955551 TGTTTTCTGTGTTTAGGGGTTCC 59.044 43.478 0.00 0.00 0.00 3.62
2798 4651 4.909880 GCACAAGACTTGGAAAATTACGAC 59.090 41.667 19.16 0.00 34.12 4.34
2852 4705 4.432633 GCTTTACGTTACTCGAAGCAGTTC 60.433 45.833 0.00 0.00 43.80 3.01
3405 5348 0.608640 AAGAGCTTGACGATCGGGTT 59.391 50.000 20.98 0.00 32.02 4.11
3456 5399 6.263392 TGGAGAACTTAGATCGATACAGGAAG 59.737 42.308 0.00 0.52 0.00 3.46
3831 5774 7.831691 TTATGAAAGTCTTCAAAACATGGGA 57.168 32.000 0.00 0.00 44.64 4.37
3832 5775 5.772825 TGAAAGTCTTCAAAACATGGGAG 57.227 39.130 0.00 0.00 38.65 4.30
3833 5776 5.200483 TGAAAGTCTTCAAAACATGGGAGT 58.800 37.500 0.00 0.00 38.65 3.85
3834 5777 5.656416 TGAAAGTCTTCAAAACATGGGAGTT 59.344 36.000 0.00 0.00 38.65 3.01
3835 5778 6.154363 TGAAAGTCTTCAAAACATGGGAGTTT 59.846 34.615 0.00 0.00 43.13 2.66
3843 5786 5.930837 AAAACATGGGAGTTTTGAAGACA 57.069 34.783 0.00 0.00 46.63 3.41
3844 5787 5.930837 AAACATGGGAGTTTTGAAGACAA 57.069 34.783 0.00 0.00 38.49 3.18
3845 5788 5.930837 AACATGGGAGTTTTGAAGACAAA 57.069 34.783 0.00 0.00 43.10 2.83
3846 5789 5.262588 ACATGGGAGTTTTGAAGACAAAC 57.737 39.130 0.00 0.00 44.22 2.93
3847 5790 4.709397 ACATGGGAGTTTTGAAGACAAACA 59.291 37.500 0.00 0.00 44.22 2.83
3848 5791 5.186797 ACATGGGAGTTTTGAAGACAAACAA 59.813 36.000 0.00 0.00 44.22 2.83
3849 5792 5.930837 TGGGAGTTTTGAAGACAAACAAT 57.069 34.783 0.00 0.00 44.22 2.71
3850 5793 7.069331 ACATGGGAGTTTTGAAGACAAACAATA 59.931 33.333 0.00 0.00 44.22 1.90
3851 5794 7.038154 TGGGAGTTTTGAAGACAAACAATAG 57.962 36.000 0.00 0.00 44.22 1.73
3852 5795 6.831353 TGGGAGTTTTGAAGACAAACAATAGA 59.169 34.615 0.00 0.00 44.22 1.98
3853 5796 7.340743 TGGGAGTTTTGAAGACAAACAATAGAA 59.659 33.333 0.00 0.00 44.22 2.10
3854 5797 8.194769 GGGAGTTTTGAAGACAAACAATAGAAA 58.805 33.333 0.00 0.00 44.22 2.52
3855 5798 9.750125 GGAGTTTTGAAGACAAACAATAGAAAT 57.250 29.630 0.00 0.00 44.22 2.17
3860 5803 9.528018 TTTGAAGACAAACAATAGAAATGAACC 57.472 29.630 0.00 0.00 40.47 3.62
3861 5804 8.463930 TGAAGACAAACAATAGAAATGAACCT 57.536 30.769 0.00 0.00 0.00 3.50
3862 5805 9.567776 TGAAGACAAACAATAGAAATGAACCTA 57.432 29.630 0.00 0.00 0.00 3.08
3872 5815 8.523915 AATAGAAATGAACCTATTGACATGCA 57.476 30.769 0.00 0.00 35.10 3.96
3873 5816 6.446781 AGAAATGAACCTATTGACATGCAG 57.553 37.500 0.00 0.00 0.00 4.41
3874 5817 4.644103 AATGAACCTATTGACATGCAGC 57.356 40.909 0.00 0.00 0.00 5.25
3875 5818 2.009051 TGAACCTATTGACATGCAGCG 58.991 47.619 0.00 0.00 0.00 5.18
3876 5819 1.331756 GAACCTATTGACATGCAGCGG 59.668 52.381 0.00 0.00 0.00 5.52
3877 5820 0.541392 ACCTATTGACATGCAGCGGA 59.459 50.000 0.00 0.00 0.00 5.54
3878 5821 1.065491 ACCTATTGACATGCAGCGGAA 60.065 47.619 0.00 0.00 0.00 4.30
3879 5822 1.600957 CCTATTGACATGCAGCGGAAG 59.399 52.381 0.00 0.00 0.00 3.46
3880 5823 1.600957 CTATTGACATGCAGCGGAAGG 59.399 52.381 0.00 0.00 0.00 3.46
3881 5824 0.322816 ATTGACATGCAGCGGAAGGT 60.323 50.000 0.00 0.00 46.81 3.50
3882 5825 0.323302 TTGACATGCAGCGGAAGGTA 59.677 50.000 0.00 0.00 41.81 3.08
3883 5826 0.108186 TGACATGCAGCGGAAGGTAG 60.108 55.000 0.00 0.00 41.81 3.18
3884 5827 0.175760 GACATGCAGCGGAAGGTAGA 59.824 55.000 0.00 0.00 41.81 2.59
3885 5828 0.108138 ACATGCAGCGGAAGGTAGAC 60.108 55.000 0.00 0.00 41.81 2.59
3886 5829 0.176680 CATGCAGCGGAAGGTAGACT 59.823 55.000 0.00 0.00 41.81 3.24
3887 5830 1.409064 CATGCAGCGGAAGGTAGACTA 59.591 52.381 0.00 0.00 41.81 2.59
3888 5831 0.815734 TGCAGCGGAAGGTAGACTAC 59.184 55.000 3.86 3.86 41.81 2.73
3889 5832 0.815734 GCAGCGGAAGGTAGACTACA 59.184 55.000 14.48 0.00 41.81 2.74
3890 5833 1.409427 GCAGCGGAAGGTAGACTACAT 59.591 52.381 14.48 4.32 41.81 2.29
3891 5834 2.159085 GCAGCGGAAGGTAGACTACATT 60.159 50.000 12.11 12.11 41.81 2.71
3892 5835 3.067742 GCAGCGGAAGGTAGACTACATTA 59.932 47.826 12.24 0.00 41.81 1.90
3893 5836 4.793353 GCAGCGGAAGGTAGACTACATTAG 60.793 50.000 12.24 10.56 41.81 1.73
3894 5837 4.579340 CAGCGGAAGGTAGACTACATTAGA 59.421 45.833 12.24 0.00 41.81 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.526650 ACACAAATTTAGGAACATGGGGAC 59.473 41.667 0.00 0.00 0.00 4.46
8 9 4.746466 ACACAAATTTAGGAACATGGGGA 58.254 39.130 0.00 0.00 0.00 4.81
9 10 5.011533 TGAACACAAATTTAGGAACATGGGG 59.988 40.000 0.00 0.00 0.00 4.96
10 11 6.095432 TGAACACAAATTTAGGAACATGGG 57.905 37.500 0.00 0.00 0.00 4.00
11 12 8.430801 TTTTGAACACAAATTTAGGAACATGG 57.569 30.769 0.00 0.00 34.24 3.66
24 25 9.443283 CACAGTTTGAAAATTTTTGAACACAAA 57.557 25.926 21.92 15.82 0.00 2.83
25 26 8.616076 ACACAGTTTGAAAATTTTTGAACACAA 58.384 25.926 21.92 12.12 0.00 3.33
26 27 8.066595 CACACAGTTTGAAAATTTTTGAACACA 58.933 29.630 21.92 7.89 0.00 3.72
27 28 7.059374 GCACACAGTTTGAAAATTTTTGAACAC 59.941 33.333 21.92 9.92 0.00 3.32
28 29 7.074502 GCACACAGTTTGAAAATTTTTGAACA 58.925 30.769 21.92 8.73 0.00 3.18
29 30 7.074502 TGCACACAGTTTGAAAATTTTTGAAC 58.925 30.769 16.43 16.43 0.00 3.18
30 31 7.172190 TCTGCACACAGTTTGAAAATTTTTGAA 59.828 29.630 4.63 0.72 44.77 2.69
31 32 6.648310 TCTGCACACAGTTTGAAAATTTTTGA 59.352 30.769 4.63 0.00 44.77 2.69
32 33 6.829703 TCTGCACACAGTTTGAAAATTTTTG 58.170 32.000 4.63 1.55 44.77 2.44
33 34 7.119553 ACATCTGCACACAGTTTGAAAATTTTT 59.880 29.630 4.63 0.00 44.77 1.94
34 35 6.594937 ACATCTGCACACAGTTTGAAAATTTT 59.405 30.769 2.28 2.28 44.77 1.82
35 36 6.108015 ACATCTGCACACAGTTTGAAAATTT 58.892 32.000 0.00 0.00 44.77 1.82
36 37 5.663456 ACATCTGCACACAGTTTGAAAATT 58.337 33.333 0.00 0.00 44.77 1.82
37 38 5.266733 ACATCTGCACACAGTTTGAAAAT 57.733 34.783 0.00 0.00 44.77 1.82
38 39 4.717233 ACATCTGCACACAGTTTGAAAA 57.283 36.364 0.00 0.00 44.77 2.29
39 40 5.826601 TTACATCTGCACACAGTTTGAAA 57.173 34.783 0.00 0.00 44.77 2.69
40 41 5.826601 TTTACATCTGCACACAGTTTGAA 57.173 34.783 0.00 0.00 44.77 2.69
41 42 5.124617 TGTTTTACATCTGCACACAGTTTGA 59.875 36.000 0.00 0.00 44.77 2.69
42 43 5.339177 TGTTTTACATCTGCACACAGTTTG 58.661 37.500 0.00 0.00 44.77 2.93
43 44 5.574891 TGTTTTACATCTGCACACAGTTT 57.425 34.783 0.00 0.00 44.77 2.66
44 45 5.772825 ATGTTTTACATCTGCACACAGTT 57.227 34.783 0.00 0.00 44.77 3.16
45 46 5.772825 AATGTTTTACATCTGCACACAGT 57.227 34.783 0.00 0.00 44.77 3.55
46 47 7.467557 AAAAATGTTTTACATCTGCACACAG 57.532 32.000 0.00 0.00 45.95 3.66
69 70 8.994429 TCTGAACATTGCTTGTAAAAGAAAAA 57.006 26.923 0.00 0.00 37.68 1.94
70 71 8.994429 TTCTGAACATTGCTTGTAAAAGAAAA 57.006 26.923 0.00 0.00 37.68 2.29
71 72 8.868916 GTTTCTGAACATTGCTTGTAAAAGAAA 58.131 29.630 0.00 14.12 37.68 2.52
72 73 8.250332 AGTTTCTGAACATTGCTTGTAAAAGAA 58.750 29.630 0.00 0.00 37.68 2.52
73 74 7.771183 AGTTTCTGAACATTGCTTGTAAAAGA 58.229 30.769 0.00 0.00 37.68 2.52
74 75 7.992180 AGTTTCTGAACATTGCTTGTAAAAG 57.008 32.000 0.00 0.00 37.68 2.27
75 76 8.770438 AAAGTTTCTGAACATTGCTTGTAAAA 57.230 26.923 0.00 0.00 37.68 1.52
76 77 8.031864 TGAAAGTTTCTGAACATTGCTTGTAAA 58.968 29.630 16.33 0.00 37.68 2.01
77 78 7.542890 TGAAAGTTTCTGAACATTGCTTGTAA 58.457 30.769 16.33 0.00 37.68 2.41
78 79 7.094508 TGAAAGTTTCTGAACATTGCTTGTA 57.905 32.000 16.33 0.00 37.68 2.41
79 80 5.964758 TGAAAGTTTCTGAACATTGCTTGT 58.035 33.333 16.33 0.00 41.53 3.16
80 81 6.890663 TTGAAAGTTTCTGAACATTGCTTG 57.109 33.333 16.33 0.00 38.26 4.01
81 82 7.903995 TTTTGAAAGTTTCTGAACATTGCTT 57.096 28.000 16.33 0.00 38.26 3.91
82 83 7.983484 AGATTTTGAAAGTTTCTGAACATTGCT 59.017 29.630 16.33 0.95 38.26 3.91
83 84 8.060090 CAGATTTTGAAAGTTTCTGAACATTGC 58.940 33.333 16.33 0.00 38.26 3.56
84 85 8.545420 CCAGATTTTGAAAGTTTCTGAACATTG 58.455 33.333 16.33 7.16 38.26 2.82
85 86 8.260114 ACCAGATTTTGAAAGTTTCTGAACATT 58.740 29.630 16.33 0.00 38.26 2.71
86 87 7.707893 CACCAGATTTTGAAAGTTTCTGAACAT 59.292 33.333 16.33 2.65 38.26 2.71
87 88 7.035004 CACCAGATTTTGAAAGTTTCTGAACA 58.965 34.615 16.33 0.00 38.26 3.18
88 89 7.257722 TCACCAGATTTTGAAAGTTTCTGAAC 58.742 34.615 16.33 5.10 36.72 3.18
89 90 7.403312 TCACCAGATTTTGAAAGTTTCTGAA 57.597 32.000 16.33 10.94 36.72 3.02
90 91 7.403312 TTCACCAGATTTTGAAAGTTTCTGA 57.597 32.000 16.33 5.86 36.72 3.27
91 92 8.652810 ATTTCACCAGATTTTGAAAGTTTCTG 57.347 30.769 16.33 5.23 43.21 3.02
92 93 9.317936 GAATTTCACCAGATTTTGAAAGTTTCT 57.682 29.630 16.33 0.00 43.21 2.52
93 94 9.317936 AGAATTTCACCAGATTTTGAAAGTTTC 57.682 29.630 8.75 8.75 43.21 2.78
106 107 9.312904 AGGATCAAAATTTAGAATTTCACCAGA 57.687 29.630 0.00 0.00 0.00 3.86
107 108 9.362539 CAGGATCAAAATTTAGAATTTCACCAG 57.637 33.333 0.00 0.00 0.00 4.00
108 109 7.818930 GCAGGATCAAAATTTAGAATTTCACCA 59.181 33.333 0.00 0.00 0.00 4.17
109 110 7.818930 TGCAGGATCAAAATTTAGAATTTCACC 59.181 33.333 0.00 0.00 0.00 4.02
110 111 8.761575 TGCAGGATCAAAATTTAGAATTTCAC 57.238 30.769 0.00 0.00 0.00 3.18
111 112 9.947433 ATTGCAGGATCAAAATTTAGAATTTCA 57.053 25.926 0.00 0.00 0.00 2.69
113 114 9.387257 GGATTGCAGGATCAAAATTTAGAATTT 57.613 29.630 0.00 0.00 0.00 1.82
114 115 8.542080 TGGATTGCAGGATCAAAATTTAGAATT 58.458 29.630 0.00 0.00 0.00 2.17
115 116 8.081517 TGGATTGCAGGATCAAAATTTAGAAT 57.918 30.769 0.00 0.00 0.00 2.40
116 117 7.479352 TGGATTGCAGGATCAAAATTTAGAA 57.521 32.000 0.00 0.00 0.00 2.10
117 118 7.479352 TTGGATTGCAGGATCAAAATTTAGA 57.521 32.000 0.00 0.00 0.00 2.10
118 119 8.550710 TTTTGGATTGCAGGATCAAAATTTAG 57.449 30.769 12.17 0.00 30.98 1.85
119 120 8.782144 GTTTTTGGATTGCAGGATCAAAATTTA 58.218 29.630 15.04 4.16 30.98 1.40
120 121 7.503230 AGTTTTTGGATTGCAGGATCAAAATTT 59.497 29.630 15.04 0.00 30.98 1.82
121 122 6.999871 AGTTTTTGGATTGCAGGATCAAAATT 59.000 30.769 15.04 4.33 30.98 1.82
122 123 6.536447 AGTTTTTGGATTGCAGGATCAAAAT 58.464 32.000 15.04 0.87 30.98 1.82
123 124 5.927819 AGTTTTTGGATTGCAGGATCAAAA 58.072 33.333 12.17 12.17 29.27 2.44
124 125 5.549742 AGTTTTTGGATTGCAGGATCAAA 57.450 34.783 0.00 2.45 0.00 2.69
125 126 6.662865 TTAGTTTTTGGATTGCAGGATCAA 57.337 33.333 0.00 0.00 0.00 2.57
126 127 6.855763 ATTAGTTTTTGGATTGCAGGATCA 57.144 33.333 0.00 0.00 0.00 2.92
127 128 9.651913 TTAAATTAGTTTTTGGATTGCAGGATC 57.348 29.630 0.00 0.00 0.00 3.36
128 129 9.657419 CTTAAATTAGTTTTTGGATTGCAGGAT 57.343 29.630 0.00 0.00 0.00 3.24
129 130 8.865090 TCTTAAATTAGTTTTTGGATTGCAGGA 58.135 29.630 0.00 0.00 0.00 3.86
130 131 9.657419 ATCTTAAATTAGTTTTTGGATTGCAGG 57.343 29.630 0.00 0.00 0.00 4.85
192 193 9.988350 CTGTAGCGTATAGATTGTTCAAATTTT 57.012 29.630 0.00 0.00 0.00 1.82
193 194 9.162764 ACTGTAGCGTATAGATTGTTCAAATTT 57.837 29.630 0.00 0.00 0.00 1.82
194 195 8.718102 ACTGTAGCGTATAGATTGTTCAAATT 57.282 30.769 0.00 0.00 0.00 1.82
195 196 9.811995 TTACTGTAGCGTATAGATTGTTCAAAT 57.188 29.630 0.00 0.00 0.00 2.32
196 197 9.297586 CTTACTGTAGCGTATAGATTGTTCAAA 57.702 33.333 0.00 0.00 0.00 2.69
197 198 8.464404 ACTTACTGTAGCGTATAGATTGTTCAA 58.536 33.333 0.00 0.00 0.00 2.69
198 199 7.993101 ACTTACTGTAGCGTATAGATTGTTCA 58.007 34.615 0.00 0.00 0.00 3.18
199 200 9.596677 CTACTTACTGTAGCGTATAGATTGTTC 57.403 37.037 0.00 0.00 41.68 3.18
200 201 8.566260 CCTACTTACTGTAGCGTATAGATTGTT 58.434 37.037 0.00 0.00 45.44 2.83
201 202 7.935755 TCCTACTTACTGTAGCGTATAGATTGT 59.064 37.037 0.00 0.00 45.44 2.71
202 203 8.229137 GTCCTACTTACTGTAGCGTATAGATTG 58.771 40.741 0.00 0.00 45.44 2.67
203 204 7.117523 CGTCCTACTTACTGTAGCGTATAGATT 59.882 40.741 0.00 0.00 45.44 2.40
204 205 6.589523 CGTCCTACTTACTGTAGCGTATAGAT 59.410 42.308 0.00 0.00 45.44 1.98
205 206 5.923114 CGTCCTACTTACTGTAGCGTATAGA 59.077 44.000 0.00 0.00 45.44 1.98
206 207 5.389307 GCGTCCTACTTACTGTAGCGTATAG 60.389 48.000 0.00 0.00 45.44 1.31
207 208 4.449068 GCGTCCTACTTACTGTAGCGTATA 59.551 45.833 0.00 0.00 45.44 1.47
208 209 3.249559 GCGTCCTACTTACTGTAGCGTAT 59.750 47.826 0.00 0.00 45.44 3.06
209 210 2.609459 GCGTCCTACTTACTGTAGCGTA 59.391 50.000 0.00 0.00 45.44 4.42
210 211 1.399791 GCGTCCTACTTACTGTAGCGT 59.600 52.381 0.00 0.00 45.44 5.07
211 212 1.669779 AGCGTCCTACTTACTGTAGCG 59.330 52.381 0.00 0.00 45.44 4.26
212 213 4.125703 TCTAGCGTCCTACTTACTGTAGC 58.874 47.826 0.00 0.00 45.44 3.58
213 214 5.234757 CACTCTAGCGTCCTACTTACTGTAG 59.765 48.000 0.00 0.00 46.15 2.74
214 215 5.105187 TCACTCTAGCGTCCTACTTACTGTA 60.105 44.000 0.00 0.00 0.00 2.74
215 216 3.940221 CACTCTAGCGTCCTACTTACTGT 59.060 47.826 0.00 0.00 0.00 3.55
216 217 4.190001 TCACTCTAGCGTCCTACTTACTG 58.810 47.826 0.00 0.00 0.00 2.74
217 218 4.484537 TCACTCTAGCGTCCTACTTACT 57.515 45.455 0.00 0.00 0.00 2.24
218 219 5.754543 ATTCACTCTAGCGTCCTACTTAC 57.245 43.478 0.00 0.00 0.00 2.34
219 220 7.172875 GTGATATTCACTCTAGCGTCCTACTTA 59.827 40.741 0.45 0.00 43.73 2.24
220 221 6.016943 GTGATATTCACTCTAGCGTCCTACTT 60.017 42.308 0.45 0.00 43.73 2.24
221 222 5.470777 GTGATATTCACTCTAGCGTCCTACT 59.529 44.000 0.45 0.00 43.73 2.57
222 223 5.615106 CGTGATATTCACTCTAGCGTCCTAC 60.615 48.000 6.13 0.00 44.85 3.18
223 224 4.451435 CGTGATATTCACTCTAGCGTCCTA 59.549 45.833 6.13 0.00 44.85 2.94
224 225 3.251245 CGTGATATTCACTCTAGCGTCCT 59.749 47.826 6.13 0.00 44.85 3.85
225 226 3.003482 ACGTGATATTCACTCTAGCGTCC 59.997 47.826 6.13 0.00 44.85 4.79
226 227 4.212213 ACGTGATATTCACTCTAGCGTC 57.788 45.455 6.13 0.00 44.85 5.19
227 228 4.634184 AACGTGATATTCACTCTAGCGT 57.366 40.909 6.13 0.00 44.85 5.07
228 229 7.519843 ACTATAACGTGATATTCACTCTAGCG 58.480 38.462 6.13 0.00 44.85 4.26
240 241 9.416794 TGAACGGTTTTTAACTATAACGTGATA 57.583 29.630 0.00 0.00 0.00 2.15
241 242 8.309163 TGAACGGTTTTTAACTATAACGTGAT 57.691 30.769 0.00 0.00 0.00 3.06
242 243 7.706281 TGAACGGTTTTTAACTATAACGTGA 57.294 32.000 0.00 0.00 0.00 4.35
243 244 7.006742 GCATGAACGGTTTTTAACTATAACGTG 59.993 37.037 0.00 0.00 0.00 4.49
244 245 7.017055 GCATGAACGGTTTTTAACTATAACGT 58.983 34.615 0.00 0.00 0.00 3.99
245 246 7.238571 AGCATGAACGGTTTTTAACTATAACG 58.761 34.615 0.00 0.00 0.00 3.18
250 251 8.667463 GGTAATAGCATGAACGGTTTTTAACTA 58.333 33.333 0.00 0.00 0.00 2.24
251 252 7.392393 AGGTAATAGCATGAACGGTTTTTAACT 59.608 33.333 0.00 0.00 0.00 2.24
252 253 7.483691 CAGGTAATAGCATGAACGGTTTTTAAC 59.516 37.037 0.00 0.00 0.00 2.01
253 254 7.175293 ACAGGTAATAGCATGAACGGTTTTTAA 59.825 33.333 0.00 0.00 0.00 1.52
254 255 6.655848 ACAGGTAATAGCATGAACGGTTTTTA 59.344 34.615 0.00 0.00 0.00 1.52
255 256 5.475564 ACAGGTAATAGCATGAACGGTTTTT 59.524 36.000 0.00 0.00 0.00 1.94
256 257 5.007682 ACAGGTAATAGCATGAACGGTTTT 58.992 37.500 0.00 0.00 0.00 2.43
257 258 4.585879 ACAGGTAATAGCATGAACGGTTT 58.414 39.130 0.00 0.00 0.00 3.27
258 259 4.189231 GACAGGTAATAGCATGAACGGTT 58.811 43.478 0.00 0.00 0.00 4.44
259 260 3.196901 TGACAGGTAATAGCATGAACGGT 59.803 43.478 0.00 0.00 0.00 4.83
260 261 3.555956 GTGACAGGTAATAGCATGAACGG 59.444 47.826 0.00 0.00 0.00 4.44
261 262 3.555956 GGTGACAGGTAATAGCATGAACG 59.444 47.826 0.00 0.00 0.00 3.95
262 263 4.332819 GTGGTGACAGGTAATAGCATGAAC 59.667 45.833 0.00 0.00 44.46 3.18
263 264 4.513442 GTGGTGACAGGTAATAGCATGAA 58.487 43.478 0.00 0.00 44.46 2.57
264 265 3.118408 GGTGGTGACAGGTAATAGCATGA 60.118 47.826 0.00 0.00 44.46 3.07
265 266 3.118261 AGGTGGTGACAGGTAATAGCATG 60.118 47.826 0.00 0.00 44.46 4.06
266 267 3.115390 AGGTGGTGACAGGTAATAGCAT 58.885 45.455 0.00 0.00 44.46 3.79
267 268 2.236146 CAGGTGGTGACAGGTAATAGCA 59.764 50.000 0.00 0.00 44.46 3.49
268 269 2.236395 ACAGGTGGTGACAGGTAATAGC 59.764 50.000 0.00 0.00 44.46 2.97
269 270 5.670792 TTACAGGTGGTGACAGGTAATAG 57.329 43.478 0.00 0.00 44.46 1.73
270 271 7.147620 CCTTATTACAGGTGGTGACAGGTAATA 60.148 40.741 0.00 0.00 44.46 0.98
271 272 6.352737 CCTTATTACAGGTGGTGACAGGTAAT 60.353 42.308 0.00 0.00 44.46 1.89
272 273 5.046159 CCTTATTACAGGTGGTGACAGGTAA 60.046 44.000 0.00 0.00 44.46 2.85
273 274 4.468510 CCTTATTACAGGTGGTGACAGGTA 59.531 45.833 0.00 0.00 44.46 3.08
274 275 3.263425 CCTTATTACAGGTGGTGACAGGT 59.737 47.826 0.00 0.00 44.46 4.00
275 276 3.263425 ACCTTATTACAGGTGGTGACAGG 59.737 47.826 0.00 0.00 46.22 4.00
276 277 4.553330 ACCTTATTACAGGTGGTGACAG 57.447 45.455 0.00 0.00 46.22 3.51
285 286 6.210784 TGCTAGCCAGTATACCTTATTACAGG 59.789 42.308 13.29 0.00 40.23 4.00
286 287 7.228314 TGCTAGCCAGTATACCTTATTACAG 57.772 40.000 13.29 0.00 0.00 2.74
287 288 7.228314 CTGCTAGCCAGTATACCTTATTACA 57.772 40.000 13.29 0.00 36.79 2.41
302 303 1.069513 ACAAACACGTACTGCTAGCCA 59.930 47.619 13.29 0.00 0.00 4.75
303 304 1.792006 ACAAACACGTACTGCTAGCC 58.208 50.000 13.29 0.00 0.00 3.93
304 305 3.493503 AGAAACAAACACGTACTGCTAGC 59.506 43.478 8.10 8.10 0.00 3.42
305 306 4.608445 GCAGAAACAAACACGTACTGCTAG 60.608 45.833 0.00 0.00 41.71 3.42
306 307 3.246699 GCAGAAACAAACACGTACTGCTA 59.753 43.478 0.00 0.00 41.71 3.49
307 308 2.031683 GCAGAAACAAACACGTACTGCT 59.968 45.455 0.00 0.00 41.71 4.24
308 309 2.372350 GCAGAAACAAACACGTACTGC 58.628 47.619 0.00 0.00 39.95 4.40
309 310 2.283086 TCGCAGAAACAAACACGTACTG 59.717 45.455 0.00 0.00 0.00 2.74
310 311 2.283351 GTCGCAGAAACAAACACGTACT 59.717 45.455 0.00 0.00 39.69 2.73
311 312 2.029486 TGTCGCAGAAACAAACACGTAC 59.971 45.455 0.00 0.00 39.69 3.67
312 313 2.269172 TGTCGCAGAAACAAACACGTA 58.731 42.857 0.00 0.00 39.69 3.57
313 314 1.080298 TGTCGCAGAAACAAACACGT 58.920 45.000 0.00 0.00 39.69 4.49
314 315 2.298300 GATGTCGCAGAAACAAACACG 58.702 47.619 0.00 0.00 39.69 4.49
315 316 2.298300 CGATGTCGCAGAAACAAACAC 58.702 47.619 0.00 0.00 39.69 3.32
316 317 2.661504 CGATGTCGCAGAAACAAACA 57.338 45.000 0.00 0.00 39.69 2.83
328 329 0.494788 GATTCGAACTCGCGATGTCG 59.505 55.000 26.63 26.63 40.35 4.35
329 330 1.828832 AGATTCGAACTCGCGATGTC 58.171 50.000 10.36 9.31 40.35 3.06
330 331 2.287069 CCTAGATTCGAACTCGCGATGT 60.287 50.000 10.36 7.38 40.35 3.06
331 332 2.311462 CCTAGATTCGAACTCGCGATG 58.689 52.381 10.36 6.65 40.35 3.84
332 333 1.267261 CCCTAGATTCGAACTCGCGAT 59.733 52.381 10.36 0.00 40.35 4.58
333 334 0.661552 CCCTAGATTCGAACTCGCGA 59.338 55.000 9.26 9.26 39.60 5.87
334 335 0.661552 TCCCTAGATTCGAACTCGCG 59.338 55.000 0.00 0.00 39.60 5.87
335 336 1.600912 GCTCCCTAGATTCGAACTCGC 60.601 57.143 0.00 0.00 39.60 5.03
336 337 1.334239 CGCTCCCTAGATTCGAACTCG 60.334 57.143 0.00 0.00 41.45 4.18
337 338 1.600912 GCGCTCCCTAGATTCGAACTC 60.601 57.143 0.00 0.00 0.00 3.01
338 339 0.386113 GCGCTCCCTAGATTCGAACT 59.614 55.000 0.00 2.62 0.00 3.01
339 340 0.386113 AGCGCTCCCTAGATTCGAAC 59.614 55.000 2.64 0.00 0.00 3.95
340 341 1.977056 TAGCGCTCCCTAGATTCGAA 58.023 50.000 16.34 0.00 0.00 3.71
341 342 2.201921 ATAGCGCTCCCTAGATTCGA 57.798 50.000 16.34 0.00 0.00 3.71
342 343 4.640789 ATAATAGCGCTCCCTAGATTCG 57.359 45.455 16.34 0.00 0.00 3.34
343 344 7.674471 AAAAATAATAGCGCTCCCTAGATTC 57.326 36.000 16.34 0.00 0.00 2.52
364 365 3.779759 ACAGCACAGAAAATCGCAAAAA 58.220 36.364 0.00 0.00 0.00 1.94
365 366 3.435105 ACAGCACAGAAAATCGCAAAA 57.565 38.095 0.00 0.00 0.00 2.44
366 367 4.764679 ATACAGCACAGAAAATCGCAAA 57.235 36.364 0.00 0.00 0.00 3.68
367 368 4.764679 AATACAGCACAGAAAATCGCAA 57.235 36.364 0.00 0.00 0.00 4.85
368 369 4.475028 CAAATACAGCACAGAAAATCGCA 58.525 39.130 0.00 0.00 0.00 5.10
369 370 3.853671 CCAAATACAGCACAGAAAATCGC 59.146 43.478 0.00 0.00 0.00 4.58
370 371 4.414852 CCCAAATACAGCACAGAAAATCG 58.585 43.478 0.00 0.00 0.00 3.34
371 372 4.082026 AGCCCAAATACAGCACAGAAAATC 60.082 41.667 0.00 0.00 0.00 2.17
372 373 3.834231 AGCCCAAATACAGCACAGAAAAT 59.166 39.130 0.00 0.00 0.00 1.82
373 374 3.005684 CAGCCCAAATACAGCACAGAAAA 59.994 43.478 0.00 0.00 0.00 2.29
374 375 2.557924 CAGCCCAAATACAGCACAGAAA 59.442 45.455 0.00 0.00 0.00 2.52
375 376 2.161855 CAGCCCAAATACAGCACAGAA 58.838 47.619 0.00 0.00 0.00 3.02
376 377 1.614051 CCAGCCCAAATACAGCACAGA 60.614 52.381 0.00 0.00 0.00 3.41
377 378 0.813184 CCAGCCCAAATACAGCACAG 59.187 55.000 0.00 0.00 0.00 3.66
378 379 1.250154 GCCAGCCCAAATACAGCACA 61.250 55.000 0.00 0.00 0.00 4.57
379 380 1.512694 GCCAGCCCAAATACAGCAC 59.487 57.895 0.00 0.00 0.00 4.40
380 381 1.682005 GGCCAGCCCAAATACAGCA 60.682 57.895 0.00 0.00 0.00 4.41
381 382 3.210302 GGCCAGCCCAAATACAGC 58.790 61.111 0.00 0.00 0.00 4.40
399 400 4.135153 CAGGAGCGTCCCCGACTG 62.135 72.222 1.06 0.00 37.19 3.51
400 401 4.680537 ACAGGAGCGTCCCCGACT 62.681 66.667 1.06 0.00 37.19 4.18
401 402 4.436998 CACAGGAGCGTCCCCGAC 62.437 72.222 1.06 0.00 37.19 4.79
421 422 2.281484 GGCAAACAGTCGGCCTGA 60.281 61.111 0.00 0.00 44.49 3.86
422 423 3.726517 CGGCAAACAGTCGGCCTG 61.727 66.667 12.32 0.00 45.53 4.85
426 427 2.972505 ACTGCGGCAAACAGTCGG 60.973 61.111 3.44 0.00 45.06 4.79
430 431 0.381801 AGACAAACTGCGGCAAACAG 59.618 50.000 3.44 0.00 41.08 3.16
431 432 1.669604 TAGACAAACTGCGGCAAACA 58.330 45.000 3.44 0.00 0.00 2.83
432 433 2.766970 TTAGACAAACTGCGGCAAAC 57.233 45.000 3.44 0.00 0.00 2.93
433 434 3.784701 TTTTAGACAAACTGCGGCAAA 57.215 38.095 3.44 0.00 0.00 3.68
434 435 3.784701 TTTTTAGACAAACTGCGGCAA 57.215 38.095 3.44 0.00 0.00 4.52
455 456 1.476488 ACTGCGGCAAACAGTCTTTTT 59.524 42.857 3.44 0.00 45.06 1.94
456 457 1.102978 ACTGCGGCAAACAGTCTTTT 58.897 45.000 3.44 0.00 45.06 2.27
457 458 2.793831 ACTGCGGCAAACAGTCTTT 58.206 47.368 3.44 0.00 45.06 2.52
458 459 4.559502 ACTGCGGCAAACAGTCTT 57.440 50.000 3.44 0.00 45.06 3.01
462 463 4.847255 GCTAACTGCGGCAAACAG 57.153 55.556 3.44 2.10 41.08 3.16
471 472 0.101759 TCCGATACCACGCTAACTGC 59.898 55.000 0.00 0.00 38.57 4.40
472 473 1.836383 GTCCGATACCACGCTAACTG 58.164 55.000 0.00 0.00 0.00 3.16
488 489 1.461911 CCGGATAAGTCGGGAGGTCC 61.462 65.000 0.00 0.00 45.15 4.46
489 490 2.039509 CCGGATAAGTCGGGAGGTC 58.960 63.158 0.00 0.00 45.15 3.85
490 491 2.132352 GCCGGATAAGTCGGGAGGT 61.132 63.158 5.05 0.00 45.15 3.85
491 492 2.735237 GCCGGATAAGTCGGGAGG 59.265 66.667 5.05 0.00 45.15 4.30
492 493 2.335369 CGCCGGATAAGTCGGGAG 59.665 66.667 5.05 0.00 45.15 4.30
493 494 3.221389 CCGCCGGATAAGTCGGGA 61.221 66.667 5.05 0.00 45.15 5.14
494 495 4.963428 GCCGCCGGATAAGTCGGG 62.963 72.222 7.68 0.51 46.86 5.14
496 497 2.067091 TACTGCCGCCGGATAAGTCG 62.067 60.000 7.68 0.00 0.00 4.18
587 588 4.382362 CGAAACGGGAAGTATAGGGAAGTT 60.382 45.833 0.00 0.00 0.00 2.66
783 799 0.034896 GACCTTCTTCGCAACCTCCA 59.965 55.000 0.00 0.00 0.00 3.86
788 804 1.773496 CGTCGACCTTCTTCGCAAC 59.227 57.895 10.58 0.00 38.95 4.17
1047 1085 1.573829 CCCCGTTGTTGACATCCACG 61.574 60.000 3.75 3.75 0.00 4.94
1165 1203 1.987855 GTCCACCACCTCCATCGGA 60.988 63.158 0.00 0.00 0.00 4.55
1185 1223 2.700773 GCAAACGCTCCCATGGTCC 61.701 63.158 11.73 0.00 0.00 4.46
1201 1239 1.842052 ATCACATTGCCATCACAGCA 58.158 45.000 0.00 0.00 38.81 4.41
1287 1328 0.248417 CATCCTCGCTCTCACTGTCG 60.248 60.000 0.00 0.00 0.00 4.35
1299 1340 3.492309 CCACCTTCTCATCTTCATCCTCG 60.492 52.174 0.00 0.00 0.00 4.63
1377 1466 0.326264 GAACACCCTCACTGCCATCT 59.674 55.000 0.00 0.00 0.00 2.90
1397 1486 4.654091 ACAGGTTTTTGATTCACCACAG 57.346 40.909 0.00 0.00 32.43 3.66
1404 1493 6.149129 AGAGGTGAAACAGGTTTTTGATTC 57.851 37.500 0.00 0.00 39.98 2.52
1472 1561 1.153349 GAACGCCCCTCCATCTGAC 60.153 63.158 0.00 0.00 0.00 3.51
1573 1665 6.487828 TCTCTTCATGATTCTTGGGTTCAAT 58.512 36.000 0.00 0.00 31.75 2.57
2668 4520 2.551032 GGTAAGACAAACAGAAACCCCG 59.449 50.000 0.00 0.00 0.00 5.73
2720 4573 2.094894 CAGAAGAAACTGCGCTATGTGG 59.905 50.000 9.73 0.00 0.00 4.17
2798 4651 2.093973 ACAGAACTCAAGAGCATACCGG 60.094 50.000 0.00 0.00 0.00 5.28
2852 4705 9.730705 TCCTCCTTATTCTGATATATTGCAAAG 57.269 33.333 1.71 0.00 0.00 2.77
3807 5750 7.505585 ACTCCCATGTTTTGAAGACTTTCATAA 59.494 33.333 0.00 0.00 42.60 1.90
3808 5751 7.004086 ACTCCCATGTTTTGAAGACTTTCATA 58.996 34.615 0.00 0.00 42.60 2.15
3809 5752 5.835280 ACTCCCATGTTTTGAAGACTTTCAT 59.165 36.000 0.00 0.00 42.60 2.57
3810 5753 5.200483 ACTCCCATGTTTTGAAGACTTTCA 58.800 37.500 0.00 0.00 41.44 2.69
3811 5754 5.774498 ACTCCCATGTTTTGAAGACTTTC 57.226 39.130 0.00 0.00 0.00 2.62
3812 5755 6.544928 AAACTCCCATGTTTTGAAGACTTT 57.455 33.333 0.00 0.00 36.86 2.66
3813 5756 6.544928 AAAACTCCCATGTTTTGAAGACTT 57.455 33.333 4.82 0.00 45.08 3.01
3821 5764 5.930837 TGTCTTCAAAACTCCCATGTTTT 57.069 34.783 0.00 0.00 46.96 2.43
3822 5765 5.930837 TTGTCTTCAAAACTCCCATGTTT 57.069 34.783 0.00 0.00 41.32 2.83
3823 5766 5.186797 TGTTTGTCTTCAAAACTCCCATGTT 59.813 36.000 0.00 0.00 43.78 2.71
3824 5767 4.709397 TGTTTGTCTTCAAAACTCCCATGT 59.291 37.500 0.00 0.00 43.78 3.21
3825 5768 5.261209 TGTTTGTCTTCAAAACTCCCATG 57.739 39.130 0.00 0.00 43.78 3.66
3826 5769 5.930837 TTGTTTGTCTTCAAAACTCCCAT 57.069 34.783 0.00 0.00 43.78 4.00
3827 5770 5.930837 ATTGTTTGTCTTCAAAACTCCCA 57.069 34.783 0.00 0.00 43.78 4.37
3828 5771 7.272037 TCTATTGTTTGTCTTCAAAACTCCC 57.728 36.000 0.00 0.00 43.78 4.30
3829 5772 9.750125 ATTTCTATTGTTTGTCTTCAAAACTCC 57.250 29.630 0.00 0.00 43.78 3.85
3834 5777 9.528018 GGTTCATTTCTATTGTTTGTCTTCAAA 57.472 29.630 0.00 0.00 40.64 2.69
3835 5778 8.912988 AGGTTCATTTCTATTGTTTGTCTTCAA 58.087 29.630 0.00 0.00 0.00 2.69
3836 5779 8.463930 AGGTTCATTTCTATTGTTTGTCTTCA 57.536 30.769 0.00 0.00 0.00 3.02
3845 5788 8.408601 GCATGTCAATAGGTTCATTTCTATTGT 58.591 33.333 17.27 2.60 46.21 2.71
3846 5789 8.407832 TGCATGTCAATAGGTTCATTTCTATTG 58.592 33.333 13.73 13.73 46.88 1.90
3847 5790 8.523915 TGCATGTCAATAGGTTCATTTCTATT 57.476 30.769 0.00 0.00 36.83 1.73
3848 5791 7.255381 GCTGCATGTCAATAGGTTCATTTCTAT 60.255 37.037 0.00 0.00 0.00 1.98
3849 5792 6.038603 GCTGCATGTCAATAGGTTCATTTCTA 59.961 38.462 0.00 0.00 0.00 2.10
3850 5793 5.163581 GCTGCATGTCAATAGGTTCATTTCT 60.164 40.000 0.00 0.00 0.00 2.52
3851 5794 5.039333 GCTGCATGTCAATAGGTTCATTTC 58.961 41.667 0.00 0.00 0.00 2.17
3852 5795 4.439153 CGCTGCATGTCAATAGGTTCATTT 60.439 41.667 0.00 0.00 0.00 2.32
3853 5796 3.065786 CGCTGCATGTCAATAGGTTCATT 59.934 43.478 0.00 0.00 0.00 2.57
3854 5797 2.615447 CGCTGCATGTCAATAGGTTCAT 59.385 45.455 0.00 0.00 0.00 2.57
3855 5798 2.009051 CGCTGCATGTCAATAGGTTCA 58.991 47.619 0.00 0.00 0.00 3.18
3856 5799 1.331756 CCGCTGCATGTCAATAGGTTC 59.668 52.381 0.00 0.00 0.00 3.62
3857 5800 1.065491 TCCGCTGCATGTCAATAGGTT 60.065 47.619 0.00 0.00 0.00 3.50
3858 5801 0.541392 TCCGCTGCATGTCAATAGGT 59.459 50.000 0.00 0.00 0.00 3.08
3859 5802 1.600957 CTTCCGCTGCATGTCAATAGG 59.399 52.381 0.00 0.00 0.00 2.57
3860 5803 1.600957 CCTTCCGCTGCATGTCAATAG 59.399 52.381 0.00 0.00 0.00 1.73
3861 5804 1.065491 ACCTTCCGCTGCATGTCAATA 60.065 47.619 0.00 0.00 0.00 1.90
3862 5805 0.322816 ACCTTCCGCTGCATGTCAAT 60.323 50.000 0.00 0.00 0.00 2.57
3863 5806 0.323302 TACCTTCCGCTGCATGTCAA 59.677 50.000 0.00 0.00 0.00 3.18
3864 5807 0.108186 CTACCTTCCGCTGCATGTCA 60.108 55.000 0.00 0.00 0.00 3.58
3865 5808 0.175760 TCTACCTTCCGCTGCATGTC 59.824 55.000 0.00 0.00 0.00 3.06
3866 5809 0.108138 GTCTACCTTCCGCTGCATGT 60.108 55.000 0.00 0.00 0.00 3.21
3867 5810 0.176680 AGTCTACCTTCCGCTGCATG 59.823 55.000 0.00 0.00 0.00 4.06
3868 5811 1.409427 GTAGTCTACCTTCCGCTGCAT 59.591 52.381 0.00 0.00 0.00 3.96
3869 5812 0.815734 GTAGTCTACCTTCCGCTGCA 59.184 55.000 0.00 0.00 0.00 4.41
3870 5813 0.815734 TGTAGTCTACCTTCCGCTGC 59.184 55.000 7.56 0.00 0.00 5.25
3871 5814 3.802948 AATGTAGTCTACCTTCCGCTG 57.197 47.619 7.56 0.00 0.00 5.18
3872 5815 4.789807 TCTAATGTAGTCTACCTTCCGCT 58.210 43.478 7.56 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.