Multiple sequence alignment - TraesCS3D01G154100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G154100 chr3D 100.000 2417 0 0 1 2417 121377648 121380064 0.000000e+00 4464
1 TraesCS3D01G154100 chr3D 96.737 429 14 0 1 429 455785613 455786041 0.000000e+00 715
2 TraesCS3D01G154100 chr3D 96.270 429 16 0 1 429 125765701 125765273 0.000000e+00 704
3 TraesCS3D01G154100 chr3D 96.047 430 17 0 1 430 257077194 257076765 0.000000e+00 701
4 TraesCS3D01G154100 chr3A 91.319 1843 96 31 591 2412 127865143 127866942 0.000000e+00 2459
5 TraesCS3D01G154100 chr3A 91.089 101 9 0 445 545 127862989 127863089 1.170000e-28 137
6 TraesCS3D01G154100 chr3B 95.279 1059 46 4 1359 2415 173035659 173036715 0.000000e+00 1676
7 TraesCS3D01G154100 chr3B 90.959 542 25 8 459 981 173032050 173032586 0.000000e+00 708
8 TraesCS3D01G154100 chr3B 96.515 373 10 1 996 1368 173032570 173032939 4.420000e-172 614
9 TraesCS3D01G154100 chr5D 96.503 429 15 0 1 429 417958991 417959419 0.000000e+00 710
10 TraesCS3D01G154100 chr5D 96.047 430 17 0 1 430 500463622 500463193 0.000000e+00 701
11 TraesCS3D01G154100 chr5D 95.814 430 18 0 1 430 519442870 519443299 0.000000e+00 695
12 TraesCS3D01G154100 chr7D 96.074 433 16 1 1 432 55311701 55311269 0.000000e+00 704
13 TraesCS3D01G154100 chr1D 96.065 432 17 0 1 432 471422361 471422792 0.000000e+00 704
14 TraesCS3D01G154100 chr1D 96.270 429 15 1 1 429 365655576 365656003 0.000000e+00 702
15 TraesCS3D01G154100 chr6B 82.511 223 17 9 593 812 420847750 420847547 2.470000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G154100 chr3D 121377648 121380064 2416 False 4464.000000 4464 100.000 1 2417 1 chr3D.!!$F1 2416
1 TraesCS3D01G154100 chr3A 127862989 127866942 3953 False 1298.000000 2459 91.204 445 2412 2 chr3A.!!$F1 1967
2 TraesCS3D01G154100 chr3B 173032050 173036715 4665 False 999.333333 1676 94.251 459 2415 3 chr3B.!!$F1 1956

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.028637 GACCGCTACTGCTACCGTAC 59.971 60.0 0.0 0.0 36.97 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 6749 0.87909 GGTCAATTTGGTCCACGGAC 59.121 55.0 7.75 7.75 43.87 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.185246 CCTGTATAGGCACTGGTGAAG 57.815 52.381 4.79 0.00 41.52 3.02
23 24 2.766263 CCTGTATAGGCACTGGTGAAGA 59.234 50.000 4.79 0.00 41.52 2.87
24 25 3.389329 CCTGTATAGGCACTGGTGAAGAT 59.611 47.826 4.79 0.00 41.52 2.40
25 26 4.141620 CCTGTATAGGCACTGGTGAAGATT 60.142 45.833 4.79 0.00 41.52 2.40
26 27 5.023533 TGTATAGGCACTGGTGAAGATTC 57.976 43.478 4.79 0.00 41.52 2.52
27 28 4.469586 TGTATAGGCACTGGTGAAGATTCA 59.530 41.667 4.79 0.00 41.52 2.57
28 29 4.785346 ATAGGCACTGGTGAAGATTCAT 57.215 40.909 4.79 0.00 41.52 2.57
29 30 5.894298 ATAGGCACTGGTGAAGATTCATA 57.106 39.130 4.79 0.00 41.52 2.15
30 31 4.785346 AGGCACTGGTGAAGATTCATAT 57.215 40.909 4.79 0.00 36.99 1.78
31 32 5.121380 AGGCACTGGTGAAGATTCATATT 57.879 39.130 4.79 0.00 36.99 1.28
32 33 4.885907 AGGCACTGGTGAAGATTCATATTG 59.114 41.667 4.79 0.00 36.99 1.90
33 34 4.498682 GGCACTGGTGAAGATTCATATTGC 60.499 45.833 4.79 12.49 39.73 3.56
34 35 4.096833 GCACTGGTGAAGATTCATATTGCA 59.903 41.667 4.79 0.00 39.73 4.08
35 36 5.732528 GCACTGGTGAAGATTCATATTGCAG 60.733 44.000 4.79 0.00 39.73 4.41
36 37 4.337555 ACTGGTGAAGATTCATATTGCAGC 59.662 41.667 0.00 0.00 39.73 5.25
37 38 3.633525 TGGTGAAGATTCATATTGCAGCC 59.366 43.478 0.00 0.00 39.73 4.85
38 39 3.633525 GGTGAAGATTCATATTGCAGCCA 59.366 43.478 0.00 0.00 39.73 4.75
39 40 4.498682 GGTGAAGATTCATATTGCAGCCAC 60.499 45.833 0.00 0.00 39.73 5.01
40 41 4.096833 GTGAAGATTCATATTGCAGCCACA 59.903 41.667 0.00 0.00 39.73 4.17
41 42 4.705991 TGAAGATTCATATTGCAGCCACAA 59.294 37.500 0.00 0.00 31.01 3.33
42 43 5.185442 TGAAGATTCATATTGCAGCCACAAA 59.815 36.000 0.00 0.00 30.11 2.83
43 44 5.864418 AGATTCATATTGCAGCCACAAAT 57.136 34.783 0.00 0.00 32.27 2.32
44 45 5.839621 AGATTCATATTGCAGCCACAAATC 58.160 37.500 0.00 0.00 32.27 2.17
45 46 4.389890 TTCATATTGCAGCCACAAATCC 57.610 40.909 0.00 0.00 32.27 3.01
46 47 3.634504 TCATATTGCAGCCACAAATCCT 58.365 40.909 0.00 0.00 32.27 3.24
47 48 4.790937 TCATATTGCAGCCACAAATCCTA 58.209 39.130 0.00 0.00 32.27 2.94
48 49 4.580167 TCATATTGCAGCCACAAATCCTAC 59.420 41.667 0.00 0.00 32.27 3.18
49 50 2.284754 TTGCAGCCACAAATCCTACA 57.715 45.000 0.00 0.00 0.00 2.74
50 51 1.533625 TGCAGCCACAAATCCTACAC 58.466 50.000 0.00 0.00 0.00 2.90
51 52 1.202867 TGCAGCCACAAATCCTACACA 60.203 47.619 0.00 0.00 0.00 3.72
52 53 2.094675 GCAGCCACAAATCCTACACAT 58.905 47.619 0.00 0.00 0.00 3.21
53 54 3.278574 GCAGCCACAAATCCTACACATA 58.721 45.455 0.00 0.00 0.00 2.29
54 55 3.885297 GCAGCCACAAATCCTACACATAT 59.115 43.478 0.00 0.00 0.00 1.78
55 56 5.063204 GCAGCCACAAATCCTACACATATA 58.937 41.667 0.00 0.00 0.00 0.86
56 57 5.180117 GCAGCCACAAATCCTACACATATAG 59.820 44.000 0.00 0.00 0.00 1.31
57 58 6.291377 CAGCCACAAATCCTACACATATAGT 58.709 40.000 0.00 0.00 0.00 2.12
58 59 6.767902 CAGCCACAAATCCTACACATATAGTT 59.232 38.462 0.00 0.00 0.00 2.24
59 60 6.992715 AGCCACAAATCCTACACATATAGTTC 59.007 38.462 0.00 0.00 0.00 3.01
60 61 6.765989 GCCACAAATCCTACACATATAGTTCA 59.234 38.462 0.00 0.00 0.00 3.18
61 62 7.282224 GCCACAAATCCTACACATATAGTTCAA 59.718 37.037 0.00 0.00 0.00 2.69
62 63 9.342308 CCACAAATCCTACACATATAGTTCAAT 57.658 33.333 0.00 0.00 0.00 2.57
68 69 9.988815 ATCCTACACATATAGTTCAATGAAGAC 57.011 33.333 0.00 0.00 0.00 3.01
69 70 8.421784 TCCTACACATATAGTTCAATGAAGACC 58.578 37.037 0.00 0.00 0.00 3.85
70 71 8.204160 CCTACACATATAGTTCAATGAAGACCA 58.796 37.037 0.00 0.00 0.00 4.02
71 72 9.599866 CTACACATATAGTTCAATGAAGACCAA 57.400 33.333 0.00 0.00 0.00 3.67
72 73 8.498054 ACACATATAGTTCAATGAAGACCAAG 57.502 34.615 0.00 0.00 0.00 3.61
73 74 8.103305 ACACATATAGTTCAATGAAGACCAAGT 58.897 33.333 0.00 0.00 0.00 3.16
74 75 9.599866 CACATATAGTTCAATGAAGACCAAGTA 57.400 33.333 0.00 0.00 0.00 2.24
75 76 9.601217 ACATATAGTTCAATGAAGACCAAGTAC 57.399 33.333 0.00 0.00 0.00 2.73
76 77 9.823647 CATATAGTTCAATGAAGACCAAGTACT 57.176 33.333 0.00 0.00 0.00 2.73
78 79 5.230942 AGTTCAATGAAGACCAAGTACTCG 58.769 41.667 0.00 0.00 0.00 4.18
79 80 5.010719 AGTTCAATGAAGACCAAGTACTCGA 59.989 40.000 0.00 0.00 0.00 4.04
80 81 5.060662 TCAATGAAGACCAAGTACTCGAG 57.939 43.478 11.84 11.84 0.00 4.04
81 82 4.765339 TCAATGAAGACCAAGTACTCGAGA 59.235 41.667 21.68 0.00 0.00 4.04
82 83 5.419155 TCAATGAAGACCAAGTACTCGAGAT 59.581 40.000 21.68 6.08 0.00 2.75
83 84 6.602009 TCAATGAAGACCAAGTACTCGAGATA 59.398 38.462 21.68 5.00 0.00 1.98
84 85 6.627395 ATGAAGACCAAGTACTCGAGATAG 57.373 41.667 21.68 3.87 0.00 2.08
85 86 5.498393 TGAAGACCAAGTACTCGAGATAGT 58.502 41.667 21.68 7.91 0.00 2.12
86 87 5.944599 TGAAGACCAAGTACTCGAGATAGTT 59.055 40.000 21.68 13.30 0.00 2.24
87 88 6.433404 TGAAGACCAAGTACTCGAGATAGTTT 59.567 38.462 21.68 3.15 0.00 2.66
88 89 6.197364 AGACCAAGTACTCGAGATAGTTTG 57.803 41.667 21.68 14.46 0.00 2.93
89 90 5.944599 AGACCAAGTACTCGAGATAGTTTGA 59.055 40.000 21.68 0.00 0.00 2.69
90 91 6.094325 AGACCAAGTACTCGAGATAGTTTGAG 59.906 42.308 21.68 11.34 35.17 3.02
91 92 5.944599 ACCAAGTACTCGAGATAGTTTGAGA 59.055 40.000 21.68 0.00 33.57 3.27
92 93 6.433404 ACCAAGTACTCGAGATAGTTTGAGAA 59.567 38.462 21.68 0.00 33.57 2.87
93 94 6.970043 CCAAGTACTCGAGATAGTTTGAGAAG 59.030 42.308 21.68 4.47 33.57 2.85
94 95 7.362229 CCAAGTACTCGAGATAGTTTGAGAAGT 60.362 40.741 21.68 0.00 33.57 3.01
95 96 8.666573 CAAGTACTCGAGATAGTTTGAGAAGTA 58.333 37.037 21.68 0.00 33.57 2.24
96 97 8.789825 AGTACTCGAGATAGTTTGAGAAGTAA 57.210 34.615 21.68 0.00 33.57 2.24
97 98 8.667463 AGTACTCGAGATAGTTTGAGAAGTAAC 58.333 37.037 21.68 0.00 33.57 2.50
98 99 7.450124 ACTCGAGATAGTTTGAGAAGTAACA 57.550 36.000 21.68 0.00 33.57 2.41
99 100 8.057536 ACTCGAGATAGTTTGAGAAGTAACAT 57.942 34.615 21.68 0.00 33.57 2.71
100 101 9.175312 ACTCGAGATAGTTTGAGAAGTAACATA 57.825 33.333 21.68 0.00 33.57 2.29
111 112 9.802039 TTTGAGAAGTAACATATTTAAGGTGGT 57.198 29.630 0.00 0.00 0.00 4.16
126 127 2.394545 GTGGTAAACACCTTGTTCGC 57.605 50.000 0.00 0.00 44.49 4.70
127 128 1.944709 GTGGTAAACACCTTGTTCGCT 59.055 47.619 0.00 0.00 44.49 4.93
128 129 2.356695 GTGGTAAACACCTTGTTCGCTT 59.643 45.455 0.00 0.00 44.49 4.68
129 130 3.560896 GTGGTAAACACCTTGTTCGCTTA 59.439 43.478 0.00 0.00 44.49 3.09
130 131 3.810941 TGGTAAACACCTTGTTCGCTTAG 59.189 43.478 0.00 0.00 40.14 2.18
131 132 3.364664 GGTAAACACCTTGTTCGCTTAGC 60.365 47.826 0.00 0.00 40.14 3.09
132 133 1.961793 AACACCTTGTTCGCTTAGCA 58.038 45.000 4.70 0.00 35.27 3.49
133 134 1.512926 ACACCTTGTTCGCTTAGCAG 58.487 50.000 4.70 0.00 0.00 4.24
134 135 1.202651 ACACCTTGTTCGCTTAGCAGT 60.203 47.619 4.70 0.00 0.00 4.40
135 136 2.036733 ACACCTTGTTCGCTTAGCAGTA 59.963 45.455 4.70 0.00 0.00 2.74
136 137 3.262420 CACCTTGTTCGCTTAGCAGTAT 58.738 45.455 4.70 0.00 0.00 2.12
137 138 3.062639 CACCTTGTTCGCTTAGCAGTATG 59.937 47.826 4.70 0.00 40.87 2.39
138 139 2.609459 CCTTGTTCGCTTAGCAGTATGG 59.391 50.000 4.70 0.00 35.86 2.74
139 140 2.309528 TGTTCGCTTAGCAGTATGGG 57.690 50.000 4.70 0.00 35.86 4.00
140 141 1.828595 TGTTCGCTTAGCAGTATGGGA 59.171 47.619 4.70 0.00 35.86 4.37
141 142 2.202566 GTTCGCTTAGCAGTATGGGAC 58.797 52.381 4.70 0.00 35.86 4.46
142 143 1.776662 TCGCTTAGCAGTATGGGACT 58.223 50.000 4.70 0.00 39.82 3.85
143 144 2.940158 TCGCTTAGCAGTATGGGACTA 58.060 47.619 4.70 0.00 35.64 2.59
144 145 3.293337 TCGCTTAGCAGTATGGGACTAA 58.707 45.455 4.70 0.00 35.64 2.24
145 146 3.702548 TCGCTTAGCAGTATGGGACTAAA 59.297 43.478 4.70 0.00 35.64 1.85
146 147 3.802685 CGCTTAGCAGTATGGGACTAAAC 59.197 47.826 4.70 0.00 35.64 2.01
147 148 4.441634 CGCTTAGCAGTATGGGACTAAACT 60.442 45.833 4.70 0.00 35.64 2.66
148 149 5.429130 GCTTAGCAGTATGGGACTAAACTT 58.571 41.667 0.00 0.00 35.64 2.66
149 150 6.579865 GCTTAGCAGTATGGGACTAAACTTA 58.420 40.000 0.00 0.00 35.64 2.24
150 151 7.046033 GCTTAGCAGTATGGGACTAAACTTAA 58.954 38.462 0.00 0.00 35.64 1.85
151 152 7.715686 GCTTAGCAGTATGGGACTAAACTTAAT 59.284 37.037 0.00 0.00 35.64 1.40
152 153 9.614792 CTTAGCAGTATGGGACTAAACTTAATT 57.385 33.333 0.00 0.00 35.64 1.40
155 156 8.211629 AGCAGTATGGGACTAAACTTAATTAGG 58.788 37.037 0.00 0.00 35.64 2.69
156 157 7.991460 GCAGTATGGGACTAAACTTAATTAGGT 59.009 37.037 0.00 0.00 35.64 3.08
157 158 9.326413 CAGTATGGGACTAAACTTAATTAGGTG 57.674 37.037 0.37 0.00 35.64 4.00
158 159 7.991460 AGTATGGGACTAAACTTAATTAGGTGC 59.009 37.037 0.37 0.00 36.27 5.01
159 160 6.129414 TGGGACTAAACTTAATTAGGTGCA 57.871 37.500 0.37 0.00 37.24 4.57
160 161 6.544650 TGGGACTAAACTTAATTAGGTGCAA 58.455 36.000 0.37 0.00 37.24 4.08
161 162 7.179269 TGGGACTAAACTTAATTAGGTGCAAT 58.821 34.615 0.37 0.00 37.24 3.56
162 163 8.330247 TGGGACTAAACTTAATTAGGTGCAATA 58.670 33.333 0.37 0.00 37.24 1.90
163 164 8.618677 GGGACTAAACTTAATTAGGTGCAATAC 58.381 37.037 0.37 0.00 37.24 1.89
164 165 9.392259 GGACTAAACTTAATTAGGTGCAATACT 57.608 33.333 0.37 0.00 37.24 2.12
169 170 8.801882 AACTTAATTAGGTGCAATACTTAGCA 57.198 30.769 0.37 0.00 38.65 3.49
170 171 8.438676 ACTTAATTAGGTGCAATACTTAGCAG 57.561 34.615 0.00 0.00 42.14 4.24
171 172 8.047310 ACTTAATTAGGTGCAATACTTAGCAGT 58.953 33.333 0.00 0.00 42.14 4.40
172 173 9.542462 CTTAATTAGGTGCAATACTTAGCAGTA 57.458 33.333 0.00 0.00 42.14 2.74
173 174 9.542462 TTAATTAGGTGCAATACTTAGCAGTAG 57.458 33.333 0.00 0.00 42.14 2.57
174 175 3.798202 AGGTGCAATACTTAGCAGTAGC 58.202 45.455 0.00 0.00 42.14 3.58
186 187 2.875080 GCAGTAGCGTGTTTTGTAGG 57.125 50.000 0.00 0.00 0.00 3.18
187 188 2.409975 GCAGTAGCGTGTTTTGTAGGA 58.590 47.619 0.00 0.00 0.00 2.94
188 189 2.803956 GCAGTAGCGTGTTTTGTAGGAA 59.196 45.455 0.00 0.00 0.00 3.36
189 190 3.249080 GCAGTAGCGTGTTTTGTAGGAAA 59.751 43.478 0.00 0.00 0.00 3.13
190 191 4.260866 GCAGTAGCGTGTTTTGTAGGAAAA 60.261 41.667 0.00 0.00 0.00 2.29
191 192 5.202640 CAGTAGCGTGTTTTGTAGGAAAAC 58.797 41.667 0.00 0.00 39.78 2.43
192 193 3.328237 AGCGTGTTTTGTAGGAAAACG 57.672 42.857 0.00 0.00 41.62 3.60
193 194 2.679336 AGCGTGTTTTGTAGGAAAACGT 59.321 40.909 0.00 0.00 41.62 3.99
194 195 3.127376 AGCGTGTTTTGTAGGAAAACGTT 59.873 39.130 0.00 0.00 41.62 3.99
195 196 3.238798 GCGTGTTTTGTAGGAAAACGTTG 59.761 43.478 0.00 0.00 41.62 4.10
196 197 3.238798 CGTGTTTTGTAGGAAAACGTTGC 59.761 43.478 0.00 0.00 41.62 4.17
197 198 4.417506 GTGTTTTGTAGGAAAACGTTGCT 58.582 39.130 0.00 0.00 41.62 3.91
198 199 5.571277 GTGTTTTGTAGGAAAACGTTGCTA 58.429 37.500 0.00 0.00 41.62 3.49
207 208 6.094193 AGGAAAACGTTGCTACTAAGTACT 57.906 37.500 0.00 0.00 32.93 2.73
208 209 6.519382 AGGAAAACGTTGCTACTAAGTACTT 58.481 36.000 13.68 13.68 32.93 2.24
209 210 6.988580 AGGAAAACGTTGCTACTAAGTACTTT 59.011 34.615 14.49 0.00 32.93 2.66
210 211 8.143835 AGGAAAACGTTGCTACTAAGTACTTTA 58.856 33.333 14.49 0.00 32.93 1.85
211 212 8.430828 GGAAAACGTTGCTACTAAGTACTTTAG 58.569 37.037 14.49 11.31 43.65 1.85
212 213 6.941218 AACGTTGCTACTAAGTACTTTAGC 57.059 37.500 23.67 23.67 42.12 3.09
213 214 6.017400 ACGTTGCTACTAAGTACTTTAGCA 57.983 37.500 27.03 27.03 44.01 3.49
214 215 6.091437 ACGTTGCTACTAAGTACTTTAGCAG 58.909 40.000 28.15 23.00 45.71 4.24
215 216 6.091437 CGTTGCTACTAAGTACTTTAGCAGT 58.909 40.000 28.15 21.11 45.71 4.40
216 217 7.094634 ACGTTGCTACTAAGTACTTTAGCAGTA 60.095 37.037 28.15 21.10 45.71 2.74
217 218 7.428761 CGTTGCTACTAAGTACTTTAGCAGTAG 59.571 40.741 28.15 26.95 45.71 2.57
218 219 6.793349 TGCTACTAAGTACTTTAGCAGTAGC 58.207 40.000 35.45 35.45 41.52 3.58
219 220 7.889511 TTGCTACTAAGTACTTTAGCAGTAGCG 60.890 40.741 35.41 20.48 45.71 4.26
228 229 4.175489 GCAGTAGCGCGTCCTCGA 62.175 66.667 8.43 0.00 39.71 4.04
229 230 2.483745 CAGTAGCGCGTCCTCGAA 59.516 61.111 8.43 0.00 39.71 3.71
230 231 1.154093 CAGTAGCGCGTCCTCGAAA 60.154 57.895 8.43 0.00 39.71 3.46
231 232 1.134530 CAGTAGCGCGTCCTCGAAAG 61.135 60.000 8.43 0.00 39.71 2.62
232 233 1.872679 GTAGCGCGTCCTCGAAAGG 60.873 63.158 8.43 0.00 44.89 3.11
233 234 3.060020 TAGCGCGTCCTCGAAAGGG 62.060 63.158 8.43 0.00 43.56 3.95
238 239 2.890371 GTCCTCGAAAGGGCGCTA 59.110 61.111 7.64 0.00 43.56 4.26
239 240 1.518792 GTCCTCGAAAGGGCGCTAC 60.519 63.158 7.64 0.00 43.56 3.58
240 241 1.681327 TCCTCGAAAGGGCGCTACT 60.681 57.895 7.64 2.81 43.56 2.57
241 242 0.394762 TCCTCGAAAGGGCGCTACTA 60.395 55.000 7.64 0.00 43.56 1.82
242 243 0.248949 CCTCGAAAGGGCGCTACTAC 60.249 60.000 7.64 3.83 39.21 2.73
243 244 0.739561 CTCGAAAGGGCGCTACTACT 59.260 55.000 7.64 0.00 0.00 2.57
244 245 1.945394 CTCGAAAGGGCGCTACTACTA 59.055 52.381 7.64 0.00 0.00 1.82
245 246 2.553172 CTCGAAAGGGCGCTACTACTAT 59.447 50.000 7.64 0.00 0.00 2.12
246 247 3.743521 TCGAAAGGGCGCTACTACTATA 58.256 45.455 7.64 0.00 0.00 1.31
247 248 4.330250 TCGAAAGGGCGCTACTACTATAT 58.670 43.478 7.64 0.00 0.00 0.86
248 249 4.394300 TCGAAAGGGCGCTACTACTATATC 59.606 45.833 7.64 0.00 0.00 1.63
249 250 4.395542 CGAAAGGGCGCTACTACTATATCT 59.604 45.833 7.64 0.00 0.00 1.98
250 251 5.583854 CGAAAGGGCGCTACTACTATATCTA 59.416 44.000 7.64 0.00 0.00 1.98
251 252 6.238157 CGAAAGGGCGCTACTACTATATCTAG 60.238 46.154 7.64 0.00 0.00 2.43
252 253 4.453751 AGGGCGCTACTACTATATCTAGC 58.546 47.826 7.64 0.00 0.00 3.42
253 254 3.565063 GGGCGCTACTACTATATCTAGCC 59.435 52.174 7.64 0.00 40.04 3.93
254 255 4.453751 GGCGCTACTACTATATCTAGCCT 58.546 47.826 7.64 0.00 37.97 4.58
255 256 4.273969 GGCGCTACTACTATATCTAGCCTG 59.726 50.000 7.64 0.00 37.97 4.85
256 257 4.273969 GCGCTACTACTATATCTAGCCTGG 59.726 50.000 0.00 0.00 0.00 4.45
257 258 4.817464 CGCTACTACTATATCTAGCCTGGG 59.183 50.000 0.00 0.00 0.00 4.45
258 259 5.134661 GCTACTACTATATCTAGCCTGGGG 58.865 50.000 0.00 0.00 0.00 4.96
259 260 4.611564 ACTACTATATCTAGCCTGGGGG 57.388 50.000 0.00 0.00 0.00 5.40
275 276 4.356442 GGCAACGCCGTGGCAATT 62.356 61.111 19.68 1.48 43.33 2.32
276 277 2.563942 GCAACGCCGTGGCAATTA 59.436 55.556 12.63 0.00 42.06 1.40
277 278 1.138671 GCAACGCCGTGGCAATTAT 59.861 52.632 12.63 0.00 42.06 1.28
278 279 0.378962 GCAACGCCGTGGCAATTATA 59.621 50.000 12.63 0.00 42.06 0.98
279 280 1.596954 GCAACGCCGTGGCAATTATAG 60.597 52.381 12.63 0.00 42.06 1.31
280 281 1.668751 CAACGCCGTGGCAATTATAGT 59.331 47.619 12.06 0.00 42.06 2.12
281 282 2.867368 CAACGCCGTGGCAATTATAGTA 59.133 45.455 12.06 0.00 42.06 1.82
282 283 2.750948 ACGCCGTGGCAATTATAGTAG 58.249 47.619 12.06 0.00 42.06 2.57
283 284 2.101917 ACGCCGTGGCAATTATAGTAGT 59.898 45.455 12.06 0.00 42.06 2.73
284 285 3.318839 ACGCCGTGGCAATTATAGTAGTA 59.681 43.478 12.06 0.00 42.06 1.82
285 286 3.918591 CGCCGTGGCAATTATAGTAGTAG 59.081 47.826 12.06 0.00 42.06 2.57
286 287 3.678548 GCCGTGGCAATTATAGTAGTAGC 59.321 47.826 5.89 0.00 41.49 3.58
287 288 3.918591 CCGTGGCAATTATAGTAGTAGCG 59.081 47.826 0.00 0.00 0.00 4.26
288 289 3.364023 CGTGGCAATTATAGTAGTAGCGC 59.636 47.826 0.00 0.00 0.00 5.92
289 290 4.557205 GTGGCAATTATAGTAGTAGCGCT 58.443 43.478 17.26 17.26 0.00 5.92
290 291 4.989168 GTGGCAATTATAGTAGTAGCGCTT 59.011 41.667 18.68 0.00 0.00 4.68
291 292 4.988540 TGGCAATTATAGTAGTAGCGCTTG 59.011 41.667 18.68 3.70 0.00 4.01
292 293 4.989168 GGCAATTATAGTAGTAGCGCTTGT 59.011 41.667 18.68 5.70 0.00 3.16
293 294 5.465724 GGCAATTATAGTAGTAGCGCTTGTT 59.534 40.000 18.68 3.95 0.00 2.83
294 295 6.018180 GGCAATTATAGTAGTAGCGCTTGTTT 60.018 38.462 18.68 1.02 0.00 2.83
295 296 7.064064 GCAATTATAGTAGTAGCGCTTGTTTC 58.936 38.462 18.68 3.02 0.00 2.78
296 297 7.254319 GCAATTATAGTAGTAGCGCTTGTTTCA 60.254 37.037 18.68 0.00 0.00 2.69
297 298 7.695869 ATTATAGTAGTAGCGCTTGTTTCAC 57.304 36.000 18.68 6.40 0.00 3.18
298 299 2.685100 AGTAGTAGCGCTTGTTTCACC 58.315 47.619 18.68 0.00 0.00 4.02
299 300 2.299297 AGTAGTAGCGCTTGTTTCACCT 59.701 45.455 18.68 0.00 0.00 4.00
300 301 3.508793 AGTAGTAGCGCTTGTTTCACCTA 59.491 43.478 18.68 0.61 0.00 3.08
301 302 2.960819 AGTAGCGCTTGTTTCACCTAG 58.039 47.619 18.68 0.00 0.00 3.02
302 303 2.561419 AGTAGCGCTTGTTTCACCTAGA 59.439 45.455 18.68 0.00 0.00 2.43
303 304 1.797025 AGCGCTTGTTTCACCTAGAC 58.203 50.000 2.64 0.00 0.00 2.59
304 305 0.796927 GCGCTTGTTTCACCTAGACC 59.203 55.000 0.00 0.00 0.00 3.85
305 306 1.068474 CGCTTGTTTCACCTAGACCG 58.932 55.000 0.00 0.00 0.00 4.79
306 307 0.796927 GCTTGTTTCACCTAGACCGC 59.203 55.000 0.00 0.00 0.00 5.68
307 308 1.608283 GCTTGTTTCACCTAGACCGCT 60.608 52.381 0.00 0.00 0.00 5.52
308 309 2.353406 GCTTGTTTCACCTAGACCGCTA 60.353 50.000 0.00 0.00 0.00 4.26
309 310 3.251571 CTTGTTTCACCTAGACCGCTAC 58.748 50.000 0.00 0.00 0.00 3.58
310 311 2.522185 TGTTTCACCTAGACCGCTACT 58.478 47.619 0.00 0.00 0.00 2.57
311 312 2.230508 TGTTTCACCTAGACCGCTACTG 59.769 50.000 0.00 0.00 0.00 2.74
312 313 0.815734 TTCACCTAGACCGCTACTGC 59.184 55.000 0.00 0.00 0.00 4.40
313 314 0.034380 TCACCTAGACCGCTACTGCT 60.034 55.000 0.00 0.00 36.97 4.24
314 315 1.211212 TCACCTAGACCGCTACTGCTA 59.789 52.381 0.00 0.00 36.97 3.49
315 316 1.334243 CACCTAGACCGCTACTGCTAC 59.666 57.143 0.00 0.00 36.97 3.58
316 317 0.953003 CCTAGACCGCTACTGCTACC 59.047 60.000 0.00 0.00 36.97 3.18
317 318 0.587285 CTAGACCGCTACTGCTACCG 59.413 60.000 0.00 0.00 36.97 4.02
318 319 0.107508 TAGACCGCTACTGCTACCGT 60.108 55.000 0.00 0.00 36.97 4.83
319 320 0.107508 AGACCGCTACTGCTACCGTA 60.108 55.000 0.00 0.00 36.97 4.02
320 321 0.028637 GACCGCTACTGCTACCGTAC 59.971 60.000 0.00 0.00 36.97 3.67
321 322 0.393537 ACCGCTACTGCTACCGTACT 60.394 55.000 0.00 0.00 36.97 2.73
322 323 1.134401 ACCGCTACTGCTACCGTACTA 60.134 52.381 0.00 0.00 36.97 1.82
323 324 2.149578 CCGCTACTGCTACCGTACTAT 58.850 52.381 0.00 0.00 36.97 2.12
324 325 2.551459 CCGCTACTGCTACCGTACTATT 59.449 50.000 0.00 0.00 36.97 1.73
325 326 3.748048 CCGCTACTGCTACCGTACTATTA 59.252 47.826 0.00 0.00 36.97 0.98
326 327 4.214119 CCGCTACTGCTACCGTACTATTAA 59.786 45.833 0.00 0.00 36.97 1.40
327 328 5.106396 CCGCTACTGCTACCGTACTATTAAT 60.106 44.000 0.00 0.00 36.97 1.40
328 329 6.092670 CCGCTACTGCTACCGTACTATTAATA 59.907 42.308 0.00 0.00 36.97 0.98
329 330 7.178741 CGCTACTGCTACCGTACTATTAATAG 58.821 42.308 18.99 18.99 36.97 1.73
330 331 6.966066 GCTACTGCTACCGTACTATTAATAGC 59.034 42.308 20.24 8.70 36.43 2.97
331 332 5.936054 ACTGCTACCGTACTATTAATAGCG 58.064 41.667 20.24 16.12 38.27 4.26
332 333 4.726416 TGCTACCGTACTATTAATAGCGC 58.274 43.478 20.24 12.83 38.27 5.92
333 334 3.782893 GCTACCGTACTATTAATAGCGCG 59.217 47.826 20.24 21.35 33.68 6.86
334 335 3.207474 ACCGTACTATTAATAGCGCGG 57.793 47.619 33.46 33.46 46.67 6.46
335 336 3.207474 CCGTACTATTAATAGCGCGGT 57.793 47.619 30.35 17.70 41.64 5.68
336 337 3.568538 CCGTACTATTAATAGCGCGGTT 58.431 45.455 30.35 14.34 41.64 4.44
337 338 3.983344 CCGTACTATTAATAGCGCGGTTT 59.017 43.478 30.35 13.18 41.64 3.27
338 339 4.445385 CCGTACTATTAATAGCGCGGTTTT 59.555 41.667 30.35 18.16 41.64 2.43
339 340 5.387752 CCGTACTATTAATAGCGCGGTTTTC 60.388 44.000 30.35 0.00 41.64 2.29
340 341 5.400485 CGTACTATTAATAGCGCGGTTTTCT 59.600 40.000 19.09 8.79 33.68 2.52
341 342 5.652744 ACTATTAATAGCGCGGTTTTCTG 57.347 39.130 19.09 8.49 33.68 3.02
342 343 5.353938 ACTATTAATAGCGCGGTTTTCTGA 58.646 37.500 19.09 5.40 33.68 3.27
343 344 5.813672 ACTATTAATAGCGCGGTTTTCTGAA 59.186 36.000 19.09 6.88 33.68 3.02
344 345 4.593597 TTAATAGCGCGGTTTTCTGAAG 57.406 40.909 19.09 0.00 0.00 3.02
345 346 0.727398 ATAGCGCGGTTTTCTGAAGC 59.273 50.000 19.09 0.00 0.00 3.86
346 347 0.320421 TAGCGCGGTTTTCTGAAGCT 60.320 50.000 19.09 0.00 41.69 3.74
347 348 1.154395 GCGCGGTTTTCTGAAGCTC 60.154 57.895 8.83 0.00 0.00 4.09
348 349 1.130613 CGCGGTTTTCTGAAGCTCG 59.869 57.895 0.00 0.00 0.00 5.03
349 350 1.154395 GCGGTTTTCTGAAGCTCGC 60.154 57.895 14.00 14.00 32.35 5.03
350 351 1.569479 GCGGTTTTCTGAAGCTCGCT 61.569 55.000 18.69 0.00 34.99 4.93
351 352 1.710013 CGGTTTTCTGAAGCTCGCTA 58.290 50.000 0.00 0.00 0.00 4.26
352 353 1.390463 CGGTTTTCTGAAGCTCGCTAC 59.610 52.381 0.00 0.00 0.00 3.58
353 354 2.689646 GGTTTTCTGAAGCTCGCTACT 58.310 47.619 0.00 0.00 0.00 2.57
354 355 2.413453 GGTTTTCTGAAGCTCGCTACTG 59.587 50.000 0.00 0.00 0.00 2.74
355 356 1.714794 TTTCTGAAGCTCGCTACTGC 58.285 50.000 0.00 0.00 0.00 4.40
356 357 0.891373 TTCTGAAGCTCGCTACTGCT 59.109 50.000 0.00 0.00 41.82 4.24
357 358 1.751437 TCTGAAGCTCGCTACTGCTA 58.249 50.000 0.00 0.00 38.75 3.49
358 359 2.092323 TCTGAAGCTCGCTACTGCTAA 58.908 47.619 0.00 0.00 38.75 3.09
359 360 2.690497 TCTGAAGCTCGCTACTGCTAAT 59.310 45.455 0.00 0.00 38.75 1.73
360 361 3.131223 TCTGAAGCTCGCTACTGCTAATT 59.869 43.478 0.00 0.00 38.75 1.40
361 362 4.338400 TCTGAAGCTCGCTACTGCTAATTA 59.662 41.667 0.00 0.00 38.75 1.40
362 363 4.611943 TGAAGCTCGCTACTGCTAATTAG 58.388 43.478 8.20 8.20 38.75 1.73
383 384 4.417100 GCAGTTGCGTCTGTTTTTAAAC 57.583 40.909 9.17 0.00 37.70 2.01
384 385 4.102649 GCAGTTGCGTCTGTTTTTAAACT 58.897 39.130 6.87 0.00 39.59 2.66
385 386 4.027702 GCAGTTGCGTCTGTTTTTAAACTG 60.028 41.667 7.99 7.99 43.60 3.16
386 387 4.027702 CAGTTGCGTCTGTTTTTAAACTGC 60.028 41.667 6.87 6.31 37.36 4.40
387 388 3.766676 TGCGTCTGTTTTTAAACTGCA 57.233 38.095 6.87 8.34 39.59 4.41
388 389 3.430931 TGCGTCTGTTTTTAAACTGCAC 58.569 40.909 6.87 6.07 39.59 4.57
389 390 3.127895 TGCGTCTGTTTTTAAACTGCACT 59.872 39.130 6.87 0.00 39.59 4.40
390 391 3.482110 GCGTCTGTTTTTAAACTGCACTG 59.518 43.478 6.87 5.38 39.59 3.66
391 392 3.482110 CGTCTGTTTTTAAACTGCACTGC 59.518 43.478 6.87 0.00 39.59 4.40
392 393 4.672409 GTCTGTTTTTAAACTGCACTGCT 58.328 39.130 1.98 0.00 39.59 4.24
393 394 4.500477 GTCTGTTTTTAAACTGCACTGCTG 59.500 41.667 6.37 6.37 39.59 4.41
394 395 3.186119 TGTTTTTAAACTGCACTGCTGC 58.814 40.909 7.76 0.00 39.11 5.25
395 396 3.119173 TGTTTTTAAACTGCACTGCTGCT 60.119 39.130 7.76 0.00 39.26 4.24
396 397 4.097135 TGTTTTTAAACTGCACTGCTGCTA 59.903 37.500 7.76 0.00 39.26 3.49
397 398 4.909696 TTTTAAACTGCACTGCTGCTAA 57.090 36.364 7.76 3.99 44.57 3.09
398 399 4.488126 TTTAAACTGCACTGCTGCTAAG 57.512 40.909 7.76 0.00 44.57 2.18
399 400 2.260844 AAACTGCACTGCTGCTAAGA 57.739 45.000 7.76 0.00 44.57 2.10
400 401 2.486472 AACTGCACTGCTGCTAAGAT 57.514 45.000 7.76 0.00 44.57 2.40
401 402 2.486472 ACTGCACTGCTGCTAAGATT 57.514 45.000 7.76 0.00 44.57 2.40
402 403 2.354259 ACTGCACTGCTGCTAAGATTC 58.646 47.619 7.76 0.00 44.57 2.52
403 404 2.027377 ACTGCACTGCTGCTAAGATTCT 60.027 45.455 7.76 0.00 44.57 2.40
404 405 2.352034 CTGCACTGCTGCTAAGATTCTG 59.648 50.000 1.98 0.00 44.57 3.02
405 406 2.289882 TGCACTGCTGCTAAGATTCTGT 60.290 45.455 1.98 0.00 44.57 3.41
406 407 3.055891 TGCACTGCTGCTAAGATTCTGTA 60.056 43.478 1.98 0.00 44.57 2.74
407 408 4.125703 GCACTGCTGCTAAGATTCTGTAT 58.874 43.478 0.00 0.00 40.63 2.29
408 409 5.163416 TGCACTGCTGCTAAGATTCTGTATA 60.163 40.000 1.98 0.00 44.57 1.47
409 410 5.931146 GCACTGCTGCTAAGATTCTGTATAT 59.069 40.000 0.00 0.00 40.63 0.86
410 411 7.093354 GCACTGCTGCTAAGATTCTGTATATA 58.907 38.462 0.00 0.00 40.63 0.86
411 412 7.600375 GCACTGCTGCTAAGATTCTGTATATAA 59.400 37.037 0.00 0.00 40.63 0.98
412 413 9.138062 CACTGCTGCTAAGATTCTGTATATAAG 57.862 37.037 0.00 0.00 0.00 1.73
413 414 8.310382 ACTGCTGCTAAGATTCTGTATATAAGG 58.690 37.037 0.00 0.00 0.00 2.69
414 415 8.195165 TGCTGCTAAGATTCTGTATATAAGGT 57.805 34.615 0.00 0.00 0.00 3.50
415 416 8.651389 TGCTGCTAAGATTCTGTATATAAGGTT 58.349 33.333 0.00 0.00 0.00 3.50
416 417 9.495572 GCTGCTAAGATTCTGTATATAAGGTTT 57.504 33.333 0.00 0.00 0.00 3.27
432 433 5.388408 AAGGTTTTCTCTAGTAGTGTCGG 57.612 43.478 0.00 0.00 0.00 4.79
433 434 4.405548 AGGTTTTCTCTAGTAGTGTCGGT 58.594 43.478 0.00 0.00 0.00 4.69
434 435 5.564550 AGGTTTTCTCTAGTAGTGTCGGTA 58.435 41.667 0.00 0.00 0.00 4.02
435 436 5.414144 AGGTTTTCTCTAGTAGTGTCGGTAC 59.586 44.000 0.00 0.00 0.00 3.34
455 456 4.879104 ACGTTGATCAACCGTAAAAACA 57.121 36.364 28.40 0.00 38.03 2.83
545 546 2.846206 AGCCTCCACATCAAGAATACCA 59.154 45.455 0.00 0.00 0.00 3.25
586 2589 6.307155 CCGTTAACAGTGCTCAGATAAAAAG 58.693 40.000 6.39 0.00 0.00 2.27
801 2814 0.322187 CCCCGATCTTTTCACCCGTT 60.322 55.000 0.00 0.00 0.00 4.44
867 2891 4.681978 GGCGCCCACACGAACTCT 62.682 66.667 18.11 0.00 34.06 3.24
881 2905 0.956633 AACTCTTCTCCACGTACGCA 59.043 50.000 16.72 0.00 0.00 5.24
971 2995 2.559123 GGATTAACCGTCGTCGTCG 58.441 57.895 4.87 4.87 38.55 5.12
972 2996 0.179189 GGATTAACCGTCGTCGTCGT 60.179 55.000 10.76 0.00 38.33 4.34
973 2997 1.175180 GATTAACCGTCGTCGTCGTC 58.825 55.000 10.76 0.00 38.33 4.20
974 2998 0.519175 ATTAACCGTCGTCGTCGTCG 60.519 55.000 13.54 13.54 44.85 5.12
975 2999 1.827315 TTAACCGTCGTCGTCGTCGT 61.827 55.000 17.80 5.72 44.09 4.34
976 3000 2.210524 TAACCGTCGTCGTCGTCGTC 62.211 60.000 17.80 5.52 44.09 4.20
978 3002 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
979 3003 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
980 3004 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
991 3015 3.764049 GTCGTCGGCTGCGTCAAC 61.764 66.667 8.78 0.00 0.00 3.18
992 3016 3.973516 TCGTCGGCTGCGTCAACT 61.974 61.111 8.78 0.00 0.00 3.16
993 3017 3.036084 CGTCGGCTGCGTCAACTT 61.036 61.111 0.00 0.00 0.00 2.66
994 3018 2.853914 GTCGGCTGCGTCAACTTC 59.146 61.111 0.00 0.00 0.00 3.01
1033 3057 2.278206 CGTGCTGGGAGTCGATCG 60.278 66.667 9.36 9.36 0.00 3.69
1107 3131 3.847602 CTGCTGGAGCGGGAGGAG 61.848 72.222 0.00 0.00 45.83 3.69
1186 3210 2.178521 GCAGGATCGACGACGTGT 59.821 61.111 4.58 0.00 40.69 4.49
1266 3290 3.775654 GAGGACCAGCGGAGGGTG 61.776 72.222 0.00 0.00 39.19 4.61
1475 6228 8.607459 CAGAGATATAGGTTTGCAACTTTGTAG 58.393 37.037 0.00 0.00 0.00 2.74
1483 6236 6.756542 AGGTTTGCAACTTTGTAGATTTTGAC 59.243 34.615 0.00 0.00 0.00 3.18
1486 6239 6.072112 TGCAACTTTGTAGATTTTGACCTC 57.928 37.500 0.00 0.00 0.00 3.85
1499 6252 1.877637 TGACCTCGTGTGGATGTTTG 58.122 50.000 0.00 0.00 0.00 2.93
1530 6283 3.119137 CCTTTGTTTATTAGCAGCACCCC 60.119 47.826 0.00 0.00 0.00 4.95
1678 6435 0.394899 CCATCTCTTGGTCTTGGGGC 60.395 60.000 0.00 0.00 40.99 5.80
1689 6446 3.017442 GGTCTTGGGGCTAGTTTGATTC 58.983 50.000 0.00 0.00 0.00 2.52
1690 6447 2.678336 GTCTTGGGGCTAGTTTGATTCG 59.322 50.000 0.00 0.00 0.00 3.34
1772 6532 3.522343 ACAGGGTTGGAATCCTTAGGTAC 59.478 47.826 0.00 0.00 0.00 3.34
1868 6628 8.962884 AATTCCTTTGTTTTTCAAGTGCTATT 57.037 26.923 0.00 0.00 37.35 1.73
1996 6756 6.162777 ACCAATTTCAATAATTTGTCCGTGG 58.837 36.000 0.00 0.00 34.32 4.94
2111 6871 5.997384 ATATTCGTCAGGTTATAGTCCCC 57.003 43.478 0.00 0.00 0.00 4.81
2113 6873 4.524802 TTCGTCAGGTTATAGTCCCCTA 57.475 45.455 0.00 0.00 0.00 3.53
2114 6874 4.524802 TCGTCAGGTTATAGTCCCCTAA 57.475 45.455 0.00 0.00 0.00 2.69
2415 7177 7.307219 CCACTAAACAAAGTAGTAGTTCAGTGC 60.307 40.741 11.19 0.00 39.21 4.40
2416 7178 7.223971 CACTAAACAAAGTAGTAGTTCAGTGCA 59.776 37.037 6.30 0.00 35.45 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.391799 TCACCAGTGCCTATACAGGTA 57.608 47.619 0.00 0.00 44.68 3.08
1 2 2.247699 TCACCAGTGCCTATACAGGT 57.752 50.000 0.00 0.00 44.68 4.00
2 3 2.766263 TCTTCACCAGTGCCTATACAGG 59.234 50.000 0.00 0.00 45.77 4.00
3 4 4.679373 ATCTTCACCAGTGCCTATACAG 57.321 45.455 0.00 0.00 0.00 2.74
4 5 4.469586 TGAATCTTCACCAGTGCCTATACA 59.530 41.667 0.00 0.00 31.01 2.29
5 6 5.023533 TGAATCTTCACCAGTGCCTATAC 57.976 43.478 0.00 0.00 31.01 1.47
6 7 5.894298 ATGAATCTTCACCAGTGCCTATA 57.106 39.130 0.00 0.00 40.49 1.31
7 8 4.785346 ATGAATCTTCACCAGTGCCTAT 57.215 40.909 0.00 0.00 40.49 2.57
8 9 5.894298 ATATGAATCTTCACCAGTGCCTA 57.106 39.130 0.00 0.00 40.49 3.93
9 10 4.785346 ATATGAATCTTCACCAGTGCCT 57.215 40.909 0.00 0.00 40.49 4.75
10 11 4.498682 GCAATATGAATCTTCACCAGTGCC 60.499 45.833 13.57 2.46 39.04 5.01
11 12 4.096833 TGCAATATGAATCTTCACCAGTGC 59.903 41.667 15.99 15.99 42.24 4.40
12 13 5.732528 GCTGCAATATGAATCTTCACCAGTG 60.733 44.000 0.00 0.00 40.49 3.66
13 14 4.337555 GCTGCAATATGAATCTTCACCAGT 59.662 41.667 0.00 0.00 40.49 4.00
14 15 4.261489 GGCTGCAATATGAATCTTCACCAG 60.261 45.833 0.50 0.01 40.49 4.00
15 16 3.633525 GGCTGCAATATGAATCTTCACCA 59.366 43.478 0.50 0.00 40.49 4.17
16 17 3.633525 TGGCTGCAATATGAATCTTCACC 59.366 43.478 0.50 0.00 40.49 4.02
17 18 4.096833 TGTGGCTGCAATATGAATCTTCAC 59.903 41.667 0.50 0.00 40.49 3.18
18 19 4.271661 TGTGGCTGCAATATGAATCTTCA 58.728 39.130 0.50 0.00 42.14 3.02
19 20 4.906065 TGTGGCTGCAATATGAATCTTC 57.094 40.909 0.50 0.00 0.00 2.87
20 21 5.664294 TTTGTGGCTGCAATATGAATCTT 57.336 34.783 0.50 0.00 0.00 2.40
21 22 5.221382 GGATTTGTGGCTGCAATATGAATCT 60.221 40.000 0.50 0.00 0.00 2.40
22 23 4.986659 GGATTTGTGGCTGCAATATGAATC 59.013 41.667 0.50 3.48 0.00 2.52
23 24 4.652421 AGGATTTGTGGCTGCAATATGAAT 59.348 37.500 0.50 0.00 0.00 2.57
24 25 4.025360 AGGATTTGTGGCTGCAATATGAA 58.975 39.130 0.50 0.00 0.00 2.57
25 26 3.634504 AGGATTTGTGGCTGCAATATGA 58.365 40.909 0.50 0.00 0.00 2.15
26 27 4.338964 TGTAGGATTTGTGGCTGCAATATG 59.661 41.667 0.50 0.00 0.00 1.78
27 28 4.339247 GTGTAGGATTTGTGGCTGCAATAT 59.661 41.667 0.50 0.00 0.00 1.28
28 29 3.694072 GTGTAGGATTTGTGGCTGCAATA 59.306 43.478 0.50 0.00 0.00 1.90
29 30 2.493278 GTGTAGGATTTGTGGCTGCAAT 59.507 45.455 0.50 0.00 0.00 3.56
30 31 1.885887 GTGTAGGATTTGTGGCTGCAA 59.114 47.619 0.50 0.00 0.00 4.08
31 32 1.202867 TGTGTAGGATTTGTGGCTGCA 60.203 47.619 0.50 0.00 0.00 4.41
32 33 1.533625 TGTGTAGGATTTGTGGCTGC 58.466 50.000 0.00 0.00 0.00 5.25
33 34 6.291377 ACTATATGTGTAGGATTTGTGGCTG 58.709 40.000 0.00 0.00 0.00 4.85
34 35 6.500589 ACTATATGTGTAGGATTTGTGGCT 57.499 37.500 0.00 0.00 0.00 4.75
35 36 6.765989 TGAACTATATGTGTAGGATTTGTGGC 59.234 38.462 0.00 0.00 0.00 5.01
36 37 8.731275 TTGAACTATATGTGTAGGATTTGTGG 57.269 34.615 0.00 0.00 0.00 4.17
42 43 9.988815 GTCTTCATTGAACTATATGTGTAGGAT 57.011 33.333 0.00 0.00 0.00 3.24
43 44 8.421784 GGTCTTCATTGAACTATATGTGTAGGA 58.578 37.037 0.00 0.00 0.00 2.94
44 45 8.204160 TGGTCTTCATTGAACTATATGTGTAGG 58.796 37.037 0.00 0.00 0.00 3.18
45 46 9.599866 TTGGTCTTCATTGAACTATATGTGTAG 57.400 33.333 0.00 0.00 0.00 2.74
46 47 9.599866 CTTGGTCTTCATTGAACTATATGTGTA 57.400 33.333 0.00 0.00 0.00 2.90
47 48 8.103305 ACTTGGTCTTCATTGAACTATATGTGT 58.897 33.333 0.00 0.00 0.00 3.72
48 49 8.498054 ACTTGGTCTTCATTGAACTATATGTG 57.502 34.615 0.00 0.00 0.00 3.21
49 50 9.601217 GTACTTGGTCTTCATTGAACTATATGT 57.399 33.333 0.00 0.00 0.00 2.29
50 51 9.823647 AGTACTTGGTCTTCATTGAACTATATG 57.176 33.333 0.00 0.00 0.00 1.78
52 53 8.188799 CGAGTACTTGGTCTTCATTGAACTATA 58.811 37.037 1.70 0.00 0.00 1.31
53 54 7.036220 CGAGTACTTGGTCTTCATTGAACTAT 58.964 38.462 1.70 0.00 0.00 2.12
54 55 6.208007 TCGAGTACTTGGTCTTCATTGAACTA 59.792 38.462 10.33 0.00 0.00 2.24
55 56 5.010719 TCGAGTACTTGGTCTTCATTGAACT 59.989 40.000 10.33 0.00 0.00 3.01
56 57 5.227908 TCGAGTACTTGGTCTTCATTGAAC 58.772 41.667 10.33 0.00 0.00 3.18
57 58 5.243060 TCTCGAGTACTTGGTCTTCATTGAA 59.757 40.000 13.13 0.00 0.00 2.69
58 59 4.765339 TCTCGAGTACTTGGTCTTCATTGA 59.235 41.667 13.13 0.00 0.00 2.57
59 60 5.060662 TCTCGAGTACTTGGTCTTCATTG 57.939 43.478 13.13 0.00 0.00 2.82
60 61 5.923733 ATCTCGAGTACTTGGTCTTCATT 57.076 39.130 13.13 0.00 0.00 2.57
61 62 6.123651 ACTATCTCGAGTACTTGGTCTTCAT 58.876 40.000 13.13 0.00 0.00 2.57
62 63 5.498393 ACTATCTCGAGTACTTGGTCTTCA 58.502 41.667 13.13 0.00 0.00 3.02
63 64 6.439675 AACTATCTCGAGTACTTGGTCTTC 57.560 41.667 13.13 0.00 0.00 2.87
64 65 6.433404 TCAAACTATCTCGAGTACTTGGTCTT 59.567 38.462 13.13 0.00 0.00 3.01
65 66 5.944599 TCAAACTATCTCGAGTACTTGGTCT 59.055 40.000 13.13 0.00 0.00 3.85
66 67 6.093771 TCTCAAACTATCTCGAGTACTTGGTC 59.906 42.308 13.13 0.00 0.00 4.02
67 68 5.944599 TCTCAAACTATCTCGAGTACTTGGT 59.055 40.000 13.13 1.82 0.00 3.67
68 69 6.438259 TCTCAAACTATCTCGAGTACTTGG 57.562 41.667 13.13 1.67 0.00 3.61
69 70 7.531716 ACTTCTCAAACTATCTCGAGTACTTG 58.468 38.462 13.13 3.44 0.00 3.16
70 71 7.690952 ACTTCTCAAACTATCTCGAGTACTT 57.309 36.000 13.13 0.00 0.00 2.24
71 72 8.667463 GTTACTTCTCAAACTATCTCGAGTACT 58.333 37.037 13.13 0.00 0.00 2.73
72 73 8.449397 TGTTACTTCTCAAACTATCTCGAGTAC 58.551 37.037 13.13 0.00 0.00 2.73
73 74 8.557592 TGTTACTTCTCAAACTATCTCGAGTA 57.442 34.615 13.13 3.58 0.00 2.59
74 75 7.450124 TGTTACTTCTCAAACTATCTCGAGT 57.550 36.000 13.13 2.46 0.00 4.18
85 86 9.802039 ACCACCTTAAATATGTTACTTCTCAAA 57.198 29.630 0.00 0.00 0.00 2.69
110 111 3.249080 TGCTAAGCGAACAAGGTGTTTAC 59.751 43.478 0.00 0.00 41.28 2.01
111 112 3.468770 TGCTAAGCGAACAAGGTGTTTA 58.531 40.909 0.00 0.00 41.28 2.01
112 113 2.290641 CTGCTAAGCGAACAAGGTGTTT 59.709 45.455 0.00 0.00 41.28 2.83
113 114 1.873591 CTGCTAAGCGAACAAGGTGTT 59.126 47.619 0.00 0.00 44.37 3.32
114 115 1.202651 ACTGCTAAGCGAACAAGGTGT 60.203 47.619 0.00 0.00 0.00 4.16
115 116 1.512926 ACTGCTAAGCGAACAAGGTG 58.487 50.000 0.00 0.00 0.00 4.00
116 117 3.262420 CATACTGCTAAGCGAACAAGGT 58.738 45.455 0.00 0.00 0.00 3.50
117 118 2.609459 CCATACTGCTAAGCGAACAAGG 59.391 50.000 0.00 0.00 0.00 3.61
118 119 2.609459 CCCATACTGCTAAGCGAACAAG 59.391 50.000 0.00 0.00 0.00 3.16
119 120 2.235155 TCCCATACTGCTAAGCGAACAA 59.765 45.455 0.00 0.00 0.00 2.83
120 121 1.828595 TCCCATACTGCTAAGCGAACA 59.171 47.619 0.00 0.00 0.00 3.18
121 122 2.159085 AGTCCCATACTGCTAAGCGAAC 60.159 50.000 0.00 0.00 36.93 3.95
122 123 2.108168 AGTCCCATACTGCTAAGCGAA 58.892 47.619 0.00 0.00 36.93 4.70
123 124 1.776662 AGTCCCATACTGCTAAGCGA 58.223 50.000 0.00 0.00 36.93 4.93
124 125 3.728076 TTAGTCCCATACTGCTAAGCG 57.272 47.619 0.00 0.00 39.39 4.68
125 126 5.024785 AGTTTAGTCCCATACTGCTAAGC 57.975 43.478 0.00 0.00 39.39 3.09
126 127 9.614792 AATTAAGTTTAGTCCCATACTGCTAAG 57.385 33.333 0.00 0.00 39.39 2.18
129 130 8.211629 CCTAATTAAGTTTAGTCCCATACTGCT 58.788 37.037 0.00 0.00 39.39 4.24
130 131 7.991460 ACCTAATTAAGTTTAGTCCCATACTGC 59.009 37.037 0.00 0.00 39.39 4.40
131 132 9.326413 CACCTAATTAAGTTTAGTCCCATACTG 57.674 37.037 0.00 0.00 39.39 2.74
132 133 7.991460 GCACCTAATTAAGTTTAGTCCCATACT 59.009 37.037 0.00 0.00 42.62 2.12
133 134 7.771826 TGCACCTAATTAAGTTTAGTCCCATAC 59.228 37.037 0.00 0.00 0.00 2.39
134 135 7.863722 TGCACCTAATTAAGTTTAGTCCCATA 58.136 34.615 0.00 0.00 0.00 2.74
135 136 6.727394 TGCACCTAATTAAGTTTAGTCCCAT 58.273 36.000 0.00 0.00 0.00 4.00
136 137 6.129414 TGCACCTAATTAAGTTTAGTCCCA 57.871 37.500 0.00 0.00 0.00 4.37
137 138 7.640597 ATTGCACCTAATTAAGTTTAGTCCC 57.359 36.000 0.00 0.00 0.00 4.46
138 139 9.392259 AGTATTGCACCTAATTAAGTTTAGTCC 57.608 33.333 0.00 0.00 0.00 3.85
143 144 9.238368 TGCTAAGTATTGCACCTAATTAAGTTT 57.762 29.630 0.00 0.00 33.94 2.66
144 145 8.801882 TGCTAAGTATTGCACCTAATTAAGTT 57.198 30.769 0.00 0.00 33.94 2.66
145 146 8.047310 ACTGCTAAGTATTGCACCTAATTAAGT 58.953 33.333 0.00 0.00 33.79 2.24
146 147 8.438676 ACTGCTAAGTATTGCACCTAATTAAG 57.561 34.615 0.00 0.00 33.79 1.85
147 148 9.542462 CTACTGCTAAGTATTGCACCTAATTAA 57.458 33.333 0.00 0.00 38.23 1.40
148 149 7.656137 GCTACTGCTAAGTATTGCACCTAATTA 59.344 37.037 0.00 0.00 38.23 1.40
149 150 6.483640 GCTACTGCTAAGTATTGCACCTAATT 59.516 38.462 0.00 0.00 38.23 1.40
150 151 5.992217 GCTACTGCTAAGTATTGCACCTAAT 59.008 40.000 0.00 0.00 38.23 1.73
151 152 5.357257 GCTACTGCTAAGTATTGCACCTAA 58.643 41.667 0.00 0.00 38.23 2.69
152 153 4.499188 CGCTACTGCTAAGTATTGCACCTA 60.499 45.833 0.00 0.00 38.23 3.08
153 154 3.738281 CGCTACTGCTAAGTATTGCACCT 60.738 47.826 0.00 0.00 38.23 4.00
154 155 2.540101 CGCTACTGCTAAGTATTGCACC 59.460 50.000 0.00 0.00 38.23 5.01
155 156 3.000322 CACGCTACTGCTAAGTATTGCAC 60.000 47.826 0.00 0.00 38.23 4.57
156 157 3.186909 CACGCTACTGCTAAGTATTGCA 58.813 45.455 0.00 0.00 38.23 4.08
157 158 3.187700 ACACGCTACTGCTAAGTATTGC 58.812 45.455 0.00 0.00 38.23 3.56
158 159 5.779806 AAACACGCTACTGCTAAGTATTG 57.220 39.130 0.00 0.00 38.23 1.90
159 160 5.699458 ACAAAACACGCTACTGCTAAGTATT 59.301 36.000 0.00 0.00 38.23 1.89
160 161 5.235516 ACAAAACACGCTACTGCTAAGTAT 58.764 37.500 0.00 0.00 38.23 2.12
161 162 4.624015 ACAAAACACGCTACTGCTAAGTA 58.376 39.130 0.00 0.00 37.88 2.24
162 163 3.463944 ACAAAACACGCTACTGCTAAGT 58.536 40.909 0.00 0.00 40.67 2.24
163 164 4.091509 CCTACAAAACACGCTACTGCTAAG 59.908 45.833 0.00 0.00 36.97 2.18
164 165 3.991773 CCTACAAAACACGCTACTGCTAA 59.008 43.478 0.00 0.00 36.97 3.09
165 166 3.256383 TCCTACAAAACACGCTACTGCTA 59.744 43.478 0.00 0.00 36.97 3.49
166 167 2.036733 TCCTACAAAACACGCTACTGCT 59.963 45.455 0.00 0.00 36.97 4.24
167 168 2.409975 TCCTACAAAACACGCTACTGC 58.590 47.619 0.00 0.00 0.00 4.40
168 169 5.202640 GTTTTCCTACAAAACACGCTACTG 58.797 41.667 5.31 0.00 39.30 2.74
169 170 4.025480 CGTTTTCCTACAAAACACGCTACT 60.025 41.667 9.87 0.00 39.42 2.57
170 171 4.206088 CGTTTTCCTACAAAACACGCTAC 58.794 43.478 9.87 0.00 39.42 3.58
171 172 3.870419 ACGTTTTCCTACAAAACACGCTA 59.130 39.130 9.87 0.00 39.42 4.26
172 173 2.679336 ACGTTTTCCTACAAAACACGCT 59.321 40.909 9.87 0.00 39.42 5.07
173 174 3.055613 ACGTTTTCCTACAAAACACGC 57.944 42.857 9.87 0.00 39.42 5.34
174 175 3.238798 GCAACGTTTTCCTACAAAACACG 59.761 43.478 0.00 1.46 39.42 4.49
175 176 4.417506 AGCAACGTTTTCCTACAAAACAC 58.582 39.130 0.00 0.00 39.42 3.32
176 177 4.705337 AGCAACGTTTTCCTACAAAACA 57.295 36.364 0.00 0.00 39.42 2.83
177 178 5.813717 AGTAGCAACGTTTTCCTACAAAAC 58.186 37.500 22.36 0.69 36.92 2.43
178 179 7.280652 ACTTAGTAGCAACGTTTTCCTACAAAA 59.719 33.333 22.36 17.07 34.16 2.44
179 180 6.762661 ACTTAGTAGCAACGTTTTCCTACAAA 59.237 34.615 22.36 13.05 34.16 2.83
180 181 6.282930 ACTTAGTAGCAACGTTTTCCTACAA 58.717 36.000 22.36 16.11 34.16 2.41
181 182 5.846203 ACTTAGTAGCAACGTTTTCCTACA 58.154 37.500 22.36 12.07 34.16 2.74
182 183 7.087007 AGTACTTAGTAGCAACGTTTTCCTAC 58.913 38.462 16.78 16.78 0.00 3.18
183 184 7.219484 AGTACTTAGTAGCAACGTTTTCCTA 57.781 36.000 0.00 0.00 0.00 2.94
184 185 6.094193 AGTACTTAGTAGCAACGTTTTCCT 57.906 37.500 0.00 0.00 0.00 3.36
185 186 6.775939 AAGTACTTAGTAGCAACGTTTTCC 57.224 37.500 6.26 0.00 0.00 3.13
186 187 7.948895 GCTAAAGTACTTAGTAGCAACGTTTTC 59.051 37.037 24.77 0.00 39.49 2.29
187 188 7.439056 TGCTAAAGTACTTAGTAGCAACGTTTT 59.561 33.333 27.97 5.91 44.41 2.43
188 189 6.925165 TGCTAAAGTACTTAGTAGCAACGTTT 59.075 34.615 27.97 6.27 44.41 3.60
189 190 6.449698 TGCTAAAGTACTTAGTAGCAACGTT 58.550 36.000 27.97 0.00 44.41 3.99
190 191 6.017400 TGCTAAAGTACTTAGTAGCAACGT 57.983 37.500 27.97 6.88 44.41 3.99
191 192 6.556146 CTGCTAAAGTACTTAGTAGCAACG 57.444 41.667 28.92 20.19 46.06 4.10
197 198 5.503031 CGCGCTACTGCTAAAGTACTTAGTA 60.503 44.000 8.92 11.51 40.56 1.82
198 199 4.670347 GCGCTACTGCTAAAGTACTTAGT 58.330 43.478 8.92 10.95 40.56 2.24
199 200 3.724751 CGCGCTACTGCTAAAGTACTTAG 59.275 47.826 8.92 5.05 40.56 2.18
200 201 3.127548 ACGCGCTACTGCTAAAGTACTTA 59.872 43.478 8.92 0.00 40.56 2.24
201 202 2.094854 ACGCGCTACTGCTAAAGTACTT 60.095 45.455 5.73 1.12 40.56 2.24
202 203 1.471684 ACGCGCTACTGCTAAAGTACT 59.528 47.619 5.73 0.00 40.56 2.73
203 204 1.844962 GACGCGCTACTGCTAAAGTAC 59.155 52.381 5.73 0.00 40.56 2.73
204 205 1.202222 GGACGCGCTACTGCTAAAGTA 60.202 52.381 5.73 0.00 40.56 2.24
205 206 0.458025 GGACGCGCTACTGCTAAAGT 60.458 55.000 5.73 0.00 43.40 2.66
206 207 0.179134 AGGACGCGCTACTGCTAAAG 60.179 55.000 5.73 0.00 36.97 1.85
207 208 0.179145 GAGGACGCGCTACTGCTAAA 60.179 55.000 5.73 0.00 36.97 1.85
208 209 1.432251 GAGGACGCGCTACTGCTAA 59.568 57.895 5.73 0.00 36.97 3.09
209 210 2.820619 CGAGGACGCGCTACTGCTA 61.821 63.158 5.73 0.00 36.97 3.49
210 211 4.180946 CGAGGACGCGCTACTGCT 62.181 66.667 5.73 0.00 36.97 4.24
211 212 3.678717 TTCGAGGACGCGCTACTGC 62.679 63.158 5.73 0.00 39.58 4.40
212 213 1.134530 CTTTCGAGGACGCGCTACTG 61.135 60.000 5.73 0.00 39.58 2.74
213 214 1.136984 CTTTCGAGGACGCGCTACT 59.863 57.895 5.73 0.57 39.58 2.57
214 215 1.872679 CCTTTCGAGGACGCGCTAC 60.873 63.158 5.73 0.00 39.58 3.58
215 216 2.488355 CCTTTCGAGGACGCGCTA 59.512 61.111 5.73 0.00 39.58 4.26
216 217 4.436998 CCCTTTCGAGGACGCGCT 62.437 66.667 5.73 0.00 39.58 5.92
220 221 3.060020 TAGCGCCCTTTCGAGGACG 62.060 63.158 2.29 0.00 41.26 4.79
221 222 1.518792 GTAGCGCCCTTTCGAGGAC 60.519 63.158 2.29 0.00 0.00 3.85
222 223 0.394762 TAGTAGCGCCCTTTCGAGGA 60.395 55.000 2.29 0.00 0.00 3.71
223 224 0.248949 GTAGTAGCGCCCTTTCGAGG 60.249 60.000 2.29 0.00 0.00 4.63
224 225 0.739561 AGTAGTAGCGCCCTTTCGAG 59.260 55.000 2.29 0.00 0.00 4.04
225 226 2.042686 TAGTAGTAGCGCCCTTTCGA 57.957 50.000 2.29 0.00 0.00 3.71
226 227 4.395542 AGATATAGTAGTAGCGCCCTTTCG 59.604 45.833 2.29 0.00 0.00 3.46
227 228 5.900865 AGATATAGTAGTAGCGCCCTTTC 57.099 43.478 2.29 0.00 0.00 2.62
228 229 5.357596 GCTAGATATAGTAGTAGCGCCCTTT 59.642 44.000 2.29 0.00 0.00 3.11
229 230 4.883006 GCTAGATATAGTAGTAGCGCCCTT 59.117 45.833 2.29 0.00 0.00 3.95
230 231 4.453751 GCTAGATATAGTAGTAGCGCCCT 58.546 47.826 2.29 2.43 0.00 5.19
231 232 3.565063 GGCTAGATATAGTAGTAGCGCCC 59.435 52.174 2.29 0.00 39.06 6.13
232 233 4.273969 CAGGCTAGATATAGTAGTAGCGCC 59.726 50.000 2.29 0.00 39.06 6.53
233 234 4.273969 CCAGGCTAGATATAGTAGTAGCGC 59.726 50.000 0.00 0.00 39.06 5.92
234 235 4.817464 CCCAGGCTAGATATAGTAGTAGCG 59.183 50.000 0.00 0.00 39.06 4.26
235 236 5.134661 CCCCAGGCTAGATATAGTAGTAGC 58.865 50.000 0.00 0.00 37.72 3.58
236 237 5.697067 CCCCCAGGCTAGATATAGTAGTAG 58.303 50.000 0.00 0.00 0.00 2.57
237 238 5.728937 CCCCCAGGCTAGATATAGTAGTA 57.271 47.826 0.00 0.00 0.00 1.82
238 239 4.611564 CCCCCAGGCTAGATATAGTAGT 57.388 50.000 0.00 0.00 0.00 2.73
258 259 2.278182 ATAATTGCCACGGCGTTGCC 62.278 55.000 29.60 14.54 46.75 4.52
259 260 0.378962 TATAATTGCCACGGCGTTGC 59.621 50.000 26.87 26.87 45.51 4.17
260 261 1.668751 ACTATAATTGCCACGGCGTTG 59.331 47.619 11.19 8.70 45.51 4.10
261 262 2.032680 ACTATAATTGCCACGGCGTT 57.967 45.000 11.19 0.00 45.51 4.84
262 263 2.101917 ACTACTATAATTGCCACGGCGT 59.898 45.455 6.77 6.77 45.51 5.68
263 264 2.750948 ACTACTATAATTGCCACGGCG 58.249 47.619 4.80 4.80 45.51 6.46
264 265 3.678548 GCTACTACTATAATTGCCACGGC 59.321 47.826 0.00 0.00 42.35 5.68
265 266 3.918591 CGCTACTACTATAATTGCCACGG 59.081 47.826 0.00 0.00 0.00 4.94
266 267 3.364023 GCGCTACTACTATAATTGCCACG 59.636 47.826 0.00 0.00 0.00 4.94
267 268 4.557205 AGCGCTACTACTATAATTGCCAC 58.443 43.478 8.99 0.00 0.00 5.01
268 269 4.866508 AGCGCTACTACTATAATTGCCA 57.133 40.909 8.99 0.00 0.00 4.92
269 270 4.989168 ACAAGCGCTACTACTATAATTGCC 59.011 41.667 12.05 0.00 0.00 4.52
270 271 6.526566 AACAAGCGCTACTACTATAATTGC 57.473 37.500 12.05 0.00 0.00 3.56
271 272 8.056571 GTGAAACAAGCGCTACTACTATAATTG 58.943 37.037 12.05 2.50 36.32 2.32
272 273 7.224167 GGTGAAACAAGCGCTACTACTATAATT 59.776 37.037 12.05 0.00 39.98 1.40
273 274 6.700520 GGTGAAACAAGCGCTACTACTATAAT 59.299 38.462 12.05 0.00 39.98 1.28
274 275 6.038356 GGTGAAACAAGCGCTACTACTATAA 58.962 40.000 12.05 0.00 39.98 0.98
275 276 5.359009 AGGTGAAACAAGCGCTACTACTATA 59.641 40.000 12.05 0.00 39.98 1.31
276 277 4.159879 AGGTGAAACAAGCGCTACTACTAT 59.840 41.667 12.05 0.00 39.98 2.12
277 278 3.508793 AGGTGAAACAAGCGCTACTACTA 59.491 43.478 12.05 0.00 39.98 1.82
278 279 2.299297 AGGTGAAACAAGCGCTACTACT 59.701 45.455 12.05 0.00 39.98 2.57
279 280 2.685100 AGGTGAAACAAGCGCTACTAC 58.315 47.619 12.05 4.44 39.98 2.73
280 281 3.760151 TCTAGGTGAAACAAGCGCTACTA 59.240 43.478 12.05 2.86 39.98 1.82
281 282 2.561419 TCTAGGTGAAACAAGCGCTACT 59.439 45.455 12.05 0.00 39.98 2.57
282 283 2.666994 GTCTAGGTGAAACAAGCGCTAC 59.333 50.000 12.05 3.17 39.98 3.58
283 284 2.353406 GGTCTAGGTGAAACAAGCGCTA 60.353 50.000 12.05 0.00 39.98 4.26
284 285 1.608283 GGTCTAGGTGAAACAAGCGCT 60.608 52.381 2.64 2.64 39.98 5.92
285 286 0.796927 GGTCTAGGTGAAACAAGCGC 59.203 55.000 0.00 0.00 39.98 5.92
286 287 1.068474 CGGTCTAGGTGAAACAAGCG 58.932 55.000 0.00 0.00 39.98 4.68
287 288 0.796927 GCGGTCTAGGTGAAACAAGC 59.203 55.000 0.00 0.00 39.98 4.01
288 289 2.457366 AGCGGTCTAGGTGAAACAAG 57.543 50.000 0.00 0.00 39.98 3.16
289 290 2.895404 AGTAGCGGTCTAGGTGAAACAA 59.105 45.455 0.00 0.00 39.98 2.83
290 291 2.230508 CAGTAGCGGTCTAGGTGAAACA 59.769 50.000 0.00 0.00 39.98 2.83
291 292 2.877335 CAGTAGCGGTCTAGGTGAAAC 58.123 52.381 0.00 0.00 0.00 2.78
292 293 1.203994 GCAGTAGCGGTCTAGGTGAAA 59.796 52.381 0.00 0.00 0.00 2.69
293 294 0.815734 GCAGTAGCGGTCTAGGTGAA 59.184 55.000 0.00 0.00 0.00 3.18
294 295 2.490165 GCAGTAGCGGTCTAGGTGA 58.510 57.895 0.00 0.00 0.00 4.02
304 305 8.143447 GCTATTAATAGTACGGTAGCAGTAGCG 61.143 44.444 20.89 3.35 42.22 4.26
305 306 6.966066 GCTATTAATAGTACGGTAGCAGTAGC 59.034 42.308 20.89 2.74 35.75 3.58
306 307 7.178741 CGCTATTAATAGTACGGTAGCAGTAG 58.821 42.308 20.89 0.00 35.49 2.57
307 308 6.402550 GCGCTATTAATAGTACGGTAGCAGTA 60.403 42.308 20.89 0.00 35.49 2.74
308 309 5.618640 GCGCTATTAATAGTACGGTAGCAGT 60.619 44.000 20.89 0.00 35.49 4.40
309 310 4.792189 GCGCTATTAATAGTACGGTAGCAG 59.208 45.833 20.89 7.05 35.49 4.24
310 311 4.669965 CGCGCTATTAATAGTACGGTAGCA 60.670 45.833 20.89 0.00 35.49 3.49
311 312 3.782893 CGCGCTATTAATAGTACGGTAGC 59.217 47.826 20.89 14.04 32.96 3.58
312 313 4.337763 CCGCGCTATTAATAGTACGGTAG 58.662 47.826 30.35 17.14 41.64 3.18
313 314 4.340894 CCGCGCTATTAATAGTACGGTA 57.659 45.455 30.35 1.48 41.64 4.02
314 315 3.207474 CCGCGCTATTAATAGTACGGT 57.793 47.619 30.35 0.00 41.64 4.83
315 316 3.207474 ACCGCGCTATTAATAGTACGG 57.793 47.619 33.46 33.46 46.67 4.02
316 317 5.400485 AGAAAACCGCGCTATTAATAGTACG 59.600 40.000 20.89 21.60 33.58 3.67
317 318 6.418819 TCAGAAAACCGCGCTATTAATAGTAC 59.581 38.462 20.89 13.37 32.96 2.73
318 319 6.506147 TCAGAAAACCGCGCTATTAATAGTA 58.494 36.000 20.89 0.00 32.96 1.82
319 320 5.353938 TCAGAAAACCGCGCTATTAATAGT 58.646 37.500 20.89 1.99 32.96 2.12
320 321 5.900339 TCAGAAAACCGCGCTATTAATAG 57.100 39.130 16.79 16.79 0.00 1.73
321 322 5.277154 GCTTCAGAAAACCGCGCTATTAATA 60.277 40.000 5.56 0.00 0.00 0.98
322 323 4.495844 GCTTCAGAAAACCGCGCTATTAAT 60.496 41.667 5.56 0.00 0.00 1.40
323 324 3.181514 GCTTCAGAAAACCGCGCTATTAA 60.182 43.478 5.56 0.00 0.00 1.40
324 325 2.350498 GCTTCAGAAAACCGCGCTATTA 59.650 45.455 5.56 0.00 0.00 0.98
325 326 1.130561 GCTTCAGAAAACCGCGCTATT 59.869 47.619 5.56 0.00 0.00 1.73
326 327 0.727398 GCTTCAGAAAACCGCGCTAT 59.273 50.000 5.56 0.00 0.00 2.97
327 328 0.320421 AGCTTCAGAAAACCGCGCTA 60.320 50.000 5.56 0.00 0.00 4.26
328 329 1.569479 GAGCTTCAGAAAACCGCGCT 61.569 55.000 5.56 0.00 0.00 5.92
329 330 1.154395 GAGCTTCAGAAAACCGCGC 60.154 57.895 0.00 0.00 0.00 6.86
330 331 1.130613 CGAGCTTCAGAAAACCGCG 59.869 57.895 0.00 0.00 0.00 6.46
331 332 1.154395 GCGAGCTTCAGAAAACCGC 60.154 57.895 6.87 6.87 0.00 5.68
332 333 1.390463 GTAGCGAGCTTCAGAAAACCG 59.610 52.381 1.86 0.00 0.00 4.44
333 334 2.413453 CAGTAGCGAGCTTCAGAAAACC 59.587 50.000 1.86 0.00 0.00 3.27
334 335 2.159774 GCAGTAGCGAGCTTCAGAAAAC 60.160 50.000 1.86 0.00 0.00 2.43
335 336 2.069273 GCAGTAGCGAGCTTCAGAAAA 58.931 47.619 1.86 0.00 0.00 2.29
336 337 1.714794 GCAGTAGCGAGCTTCAGAAA 58.285 50.000 1.86 0.00 0.00 2.52
337 338 3.425578 GCAGTAGCGAGCTTCAGAA 57.574 52.632 1.86 0.00 0.00 3.02
355 356 4.928661 AACAGACGCAACTGCTAATTAG 57.071 40.909 8.20 8.20 41.06 1.73
356 357 5.682943 AAAACAGACGCAACTGCTAATTA 57.317 34.783 6.99 0.00 41.06 1.40
357 358 4.568152 AAAACAGACGCAACTGCTAATT 57.432 36.364 6.99 0.00 41.06 1.40
358 359 4.568152 AAAAACAGACGCAACTGCTAAT 57.432 36.364 6.99 0.00 41.06 1.73
359 360 5.487153 TTAAAAACAGACGCAACTGCTAA 57.513 34.783 6.99 0.00 41.06 3.09
360 361 5.065474 AGTTTAAAAACAGACGCAACTGCTA 59.935 36.000 8.21 0.00 41.30 3.49
361 362 4.102649 GTTTAAAAACAGACGCAACTGCT 58.897 39.130 6.99 0.00 41.06 4.24
362 363 4.027702 CAGTTTAAAAACAGACGCAACTGC 60.028 41.667 8.21 0.00 41.30 4.40
363 364 4.027702 GCAGTTTAAAAACAGACGCAACTG 60.028 41.667 8.21 5.04 41.61 3.16
364 365 4.102649 GCAGTTTAAAAACAGACGCAACT 58.897 39.130 8.21 0.00 41.30 3.16
365 366 3.854809 TGCAGTTTAAAAACAGACGCAAC 59.145 39.130 8.21 0.00 41.30 4.17
366 367 3.854809 GTGCAGTTTAAAAACAGACGCAA 59.145 39.130 8.21 0.00 41.30 4.85
367 368 3.127895 AGTGCAGTTTAAAAACAGACGCA 59.872 39.130 8.21 7.78 41.30 5.24
368 369 3.482110 CAGTGCAGTTTAAAAACAGACGC 59.518 43.478 8.21 5.63 41.30 5.19
369 370 3.482110 GCAGTGCAGTTTAAAAACAGACG 59.518 43.478 11.09 0.00 41.30 4.18
370 371 4.500477 CAGCAGTGCAGTTTAAAAACAGAC 59.500 41.667 19.20 2.03 41.30 3.51
371 372 4.671377 CAGCAGTGCAGTTTAAAAACAGA 58.329 39.130 19.20 0.00 41.30 3.41
386 387 9.138062 CTTATATACAGAATCTTAGCAGCAGTG 57.862 37.037 0.00 0.00 0.00 3.66
387 388 8.310382 CCTTATATACAGAATCTTAGCAGCAGT 58.690 37.037 0.00 0.00 0.00 4.40
388 389 8.310382 ACCTTATATACAGAATCTTAGCAGCAG 58.690 37.037 0.00 0.00 0.00 4.24
389 390 8.195165 ACCTTATATACAGAATCTTAGCAGCA 57.805 34.615 0.00 0.00 0.00 4.41
390 391 9.495572 AAACCTTATATACAGAATCTTAGCAGC 57.504 33.333 0.00 0.00 0.00 5.25
406 407 8.848182 CCGACACTACTAGAGAAAACCTTATAT 58.152 37.037 0.00 0.00 0.00 0.86
407 408 7.831193 ACCGACACTACTAGAGAAAACCTTATA 59.169 37.037 0.00 0.00 0.00 0.98
408 409 6.662663 ACCGACACTACTAGAGAAAACCTTAT 59.337 38.462 0.00 0.00 0.00 1.73
409 410 6.006449 ACCGACACTACTAGAGAAAACCTTA 58.994 40.000 0.00 0.00 0.00 2.69
410 411 4.831710 ACCGACACTACTAGAGAAAACCTT 59.168 41.667 0.00 0.00 0.00 3.50
411 412 4.405548 ACCGACACTACTAGAGAAAACCT 58.594 43.478 0.00 0.00 0.00 3.50
412 413 4.780275 ACCGACACTACTAGAGAAAACC 57.220 45.455 0.00 0.00 0.00 3.27
413 414 5.106908 ACGTACCGACACTACTAGAGAAAAC 60.107 44.000 0.00 0.00 0.00 2.43
414 415 4.997395 ACGTACCGACACTACTAGAGAAAA 59.003 41.667 0.00 0.00 0.00 2.29
415 416 4.569943 ACGTACCGACACTACTAGAGAAA 58.430 43.478 0.00 0.00 0.00 2.52
416 417 4.193826 ACGTACCGACACTACTAGAGAA 57.806 45.455 0.00 0.00 0.00 2.87
417 418 3.876274 ACGTACCGACACTACTAGAGA 57.124 47.619 0.00 0.00 0.00 3.10
418 419 3.928992 TCAACGTACCGACACTACTAGAG 59.071 47.826 0.00 0.00 0.00 2.43
419 420 3.925379 TCAACGTACCGACACTACTAGA 58.075 45.455 0.00 0.00 0.00 2.43
420 421 4.330894 TGATCAACGTACCGACACTACTAG 59.669 45.833 0.00 0.00 0.00 2.57
421 422 4.252878 TGATCAACGTACCGACACTACTA 58.747 43.478 0.00 0.00 0.00 1.82
422 423 3.076621 TGATCAACGTACCGACACTACT 58.923 45.455 0.00 0.00 0.00 2.57
423 424 3.476295 TGATCAACGTACCGACACTAC 57.524 47.619 0.00 0.00 0.00 2.73
424 425 3.366273 GGTTGATCAACGTACCGACACTA 60.366 47.826 27.69 0.00 42.02 2.74
425 426 2.608752 GGTTGATCAACGTACCGACACT 60.609 50.000 27.69 0.00 42.02 3.55
426 427 1.723003 GGTTGATCAACGTACCGACAC 59.277 52.381 27.69 10.46 42.02 3.67
427 428 2.068837 GGTTGATCAACGTACCGACA 57.931 50.000 27.69 0.00 42.02 4.35
431 432 4.988708 TTTTACGGTTGATCAACGTACC 57.011 40.909 27.52 18.53 42.02 3.34
432 433 5.616785 GTGTTTTTACGGTTGATCAACGTAC 59.383 40.000 27.52 22.36 42.02 3.67
433 434 5.277250 GGTGTTTTTACGGTTGATCAACGTA 60.277 40.000 27.69 26.47 42.02 3.57
434 435 4.496175 GGTGTTTTTACGGTTGATCAACGT 60.496 41.667 27.69 27.31 42.02 3.99
435 436 3.969981 GGTGTTTTTACGGTTGATCAACG 59.030 43.478 27.69 24.02 42.02 4.10
436 437 4.922719 TGGTGTTTTTACGGTTGATCAAC 58.077 39.130 27.16 27.16 40.45 3.18
437 438 5.776173 ATGGTGTTTTTACGGTTGATCAA 57.224 34.783 3.38 3.38 0.00 2.57
438 439 5.776173 AATGGTGTTTTTACGGTTGATCA 57.224 34.783 0.00 0.00 0.00 2.92
439 440 8.241367 AGAATAATGGTGTTTTTACGGTTGATC 58.759 33.333 0.00 0.00 0.00 2.92
440 441 8.117813 AGAATAATGGTGTTTTTACGGTTGAT 57.882 30.769 0.00 0.00 0.00 2.57
441 442 7.228906 TGAGAATAATGGTGTTTTTACGGTTGA 59.771 33.333 0.00 0.00 0.00 3.18
442 443 7.364200 TGAGAATAATGGTGTTTTTACGGTTG 58.636 34.615 0.00 0.00 0.00 3.77
443 444 7.513371 TGAGAATAATGGTGTTTTTACGGTT 57.487 32.000 0.00 0.00 0.00 4.44
447 448 7.702348 GGCTCATGAGAATAATGGTGTTTTTAC 59.298 37.037 27.04 1.50 0.00 2.01
451 452 4.646492 GGGCTCATGAGAATAATGGTGTTT 59.354 41.667 27.04 0.00 0.00 2.83
455 456 4.736611 ATGGGCTCATGAGAATAATGGT 57.263 40.909 27.04 0.39 31.34 3.55
556 569 0.531090 AGCACTGTTAACGGCGAACA 60.531 50.000 16.62 14.16 35.55 3.18
557 570 0.163146 GAGCACTGTTAACGGCGAAC 59.837 55.000 16.62 9.48 0.00 3.95
568 581 7.807977 TTCTTTCTTTTTATCTGAGCACTGT 57.192 32.000 0.00 0.00 0.00 3.55
608 2621 8.579863 CATAAACTGGTTTTCCTTCTTCTGATT 58.420 33.333 4.01 0.00 41.38 2.57
745 2758 4.863131 GGACGATCACGATTCTTTGTAGTT 59.137 41.667 0.00 0.00 42.66 2.24
746 2759 4.082408 TGGACGATCACGATTCTTTGTAGT 60.082 41.667 0.00 0.00 42.66 2.73
747 2760 4.421058 TGGACGATCACGATTCTTTGTAG 58.579 43.478 0.00 0.00 42.66 2.74
785 2798 2.988493 TCGTAAACGGGTGAAAAGATCG 59.012 45.455 2.24 0.00 40.29 3.69
801 2814 1.130955 GTGTCCGAGCGTTTTCGTAA 58.869 50.000 5.63 0.00 46.03 3.18
867 2891 1.370778 CGTGTGCGTACGTGGAGAA 60.371 57.895 17.90 0.00 39.13 2.87
974 2998 3.764049 GTTGACGCAGCCGACGAC 61.764 66.667 0.00 0.00 36.63 4.34
975 2999 3.493830 AAGTTGACGCAGCCGACGA 62.494 57.895 0.00 0.00 38.29 4.20
976 3000 3.000080 GAAGTTGACGCAGCCGACG 62.000 63.158 0.00 0.00 38.29 5.12
977 3001 1.618640 GAGAAGTTGACGCAGCCGAC 61.619 60.000 0.00 0.00 38.29 4.79
978 3002 1.372997 GAGAAGTTGACGCAGCCGA 60.373 57.895 0.00 0.00 38.29 5.54
979 3003 2.720758 CGAGAAGTTGACGCAGCCG 61.721 63.158 0.00 0.00 41.14 5.52
980 3004 3.159984 CGAGAAGTTGACGCAGCC 58.840 61.111 0.00 0.00 0.00 4.85
984 3008 3.204726 GACATCGCGAGAAGTTGACGC 62.205 57.143 16.66 11.60 42.82 5.19
985 3009 0.635731 GACATCGCGAGAAGTTGACG 59.364 55.000 16.66 0.00 42.82 4.35
986 3010 0.635731 CGACATCGCGAGAAGTTGAC 59.364 55.000 16.66 7.00 43.96 3.18
987 3011 0.240145 ACGACATCGCGAGAAGTTGA 59.760 50.000 24.48 0.00 43.96 3.18
988 3012 0.635731 GACGACATCGCGAGAAGTTG 59.364 55.000 16.66 18.19 42.82 3.16
989 3013 0.793478 CGACGACATCGCGAGAAGTT 60.793 55.000 16.66 0.00 45.52 2.66
990 3014 1.226046 CGACGACATCGCGAGAAGT 60.226 57.895 16.66 13.30 45.52 3.01
991 3015 3.578143 CGACGACATCGCGAGAAG 58.422 61.111 16.66 9.78 45.52 2.85
1383 6136 2.182030 CTCGAGACGGGCCTGTTC 59.818 66.667 20.79 16.40 0.00 3.18
1475 6228 3.074412 ACATCCACACGAGGTCAAAATC 58.926 45.455 0.00 0.00 25.94 2.17
1483 6236 2.217750 TGTTCAAACATCCACACGAGG 58.782 47.619 0.00 0.00 33.17 4.63
1486 6239 4.142902 GGAGTATGTTCAAACATCCACACG 60.143 45.833 11.45 0.00 46.10 4.49
1499 6252 7.910683 GCTGCTAATAAACAAAGGAGTATGTTC 59.089 37.037 0.00 0.00 38.75 3.18
1530 6283 4.571919 TCCTAAATGTCACCCTTACAACG 58.428 43.478 0.00 0.00 0.00 4.10
1689 6446 9.713740 CTCTGAAATTTCTATGAAATTCCTTCG 57.286 33.333 18.64 8.73 36.78 3.79
1868 6628 8.260818 TGTTAAAAATTGATTCAAGGGTGTTCA 58.739 29.630 5.21 0.00 0.00 3.18
1989 6749 0.879090 GGTCAATTTGGTCCACGGAC 59.121 55.000 7.75 7.75 43.87 4.79
1996 6756 7.084486 GTGAAAAGTAGATGGTCAATTTGGTC 58.916 38.462 0.00 0.00 0.00 4.02
2085 6845 8.033626 GGGGACTATAACCTGACGAATATTAAG 58.966 40.741 0.00 0.00 0.00 1.85
2092 6852 3.393426 AGGGGACTATAACCTGACGAA 57.607 47.619 0.00 0.00 40.61 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.