Multiple sequence alignment - TraesCS3D01G153400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G153400 chr3D 100.000 4538 0 0 1 4538 120149946 120145409 0.000000e+00 8381.0
1 TraesCS3D01G153400 chr3A 92.617 3508 180 36 369 3853 127091470 127088019 0.000000e+00 4970.0
2 TraesCS3D01G153400 chr3A 89.785 186 16 1 9 191 127091699 127091514 7.590000e-58 235.0
3 TraesCS3D01G153400 chr3A 87.701 187 21 2 4120 4304 127074718 127074532 2.750000e-52 217.0
4 TraesCS3D01G153400 chr3A 86.826 167 15 2 3909 4075 127074885 127074726 3.610000e-41 180.0
5 TraesCS3D01G153400 chr5B 90.078 1149 64 17 2620 3752 507795338 507796452 0.000000e+00 1445.0
6 TraesCS3D01G153400 chr5B 87.042 355 34 9 4120 4466 507797650 507798000 1.530000e-104 390.0
7 TraesCS3D01G153400 chr5B 86.517 178 17 2 3898 4075 507797472 507797642 5.990000e-44 189.0
8 TraesCS3D01G153400 chr6D 86.055 545 45 6 3983 4514 452124416 452124942 1.430000e-154 556.0
9 TraesCS3D01G153400 chr6D 87.097 186 20 4 1400 1583 402353130 402352947 1.650000e-49 207.0
10 TraesCS3D01G153400 chr1B 78.562 793 133 22 2164 2949 642060894 642061656 5.280000e-134 488.0
11 TraesCS3D01G153400 chr1D 81.620 321 55 4 2631 2949 465100393 465100711 3.480000e-66 263.0
12 TraesCS3D01G153400 chr3B 83.165 297 25 12 3854 4144 172225966 172225689 9.750000e-62 248.0
13 TraesCS3D01G153400 chr3B 82.781 302 27 12 3854 4149 172106495 172106213 3.510000e-61 246.0
14 TraesCS3D01G153400 chr3B 87.113 194 24 1 4180 4372 172106212 172106019 7.640000e-53 219.0
15 TraesCS3D01G153400 chr3B 86.082 194 26 1 4180 4372 172225683 172225490 1.650000e-49 207.0
16 TraesCS3D01G153400 chr1A 80.363 331 61 4 2621 2949 557425828 557426156 9.750000e-62 248.0
17 TraesCS3D01G153400 chr7A 86.802 197 20 6 1400 1593 96051658 96051465 9.890000e-52 215.0
18 TraesCS3D01G153400 chr7A 84.615 208 26 6 1389 1593 95230442 95230238 7.700000e-48 202.0
19 TraesCS3D01G153400 chr7A 84.615 208 26 6 1389 1593 95237617 95237413 7.700000e-48 202.0
20 TraesCS3D01G153400 chr7D 85.646 209 22 8 1389 1593 93033678 93033474 3.560000e-51 213.0
21 TraesCS3D01G153400 chr7B 85.577 208 24 6 1389 1593 45641857 45641653 3.560000e-51 213.0
22 TraesCS3D01G153400 chrUn 84.615 208 26 6 1389 1593 82676759 82676963 7.700000e-48 202.0
23 TraesCS3D01G153400 chr6A 86.096 187 20 6 1400 1583 549045374 549045191 3.580000e-46 196.0
24 TraesCS3D01G153400 chr5D 87.500 96 12 0 619 714 550192021 550192116 1.330000e-20 111.0
25 TraesCS3D01G153400 chr4A 96.970 33 1 0 631 663 558420418 558420386 6.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G153400 chr3D 120145409 120149946 4537 True 8381.000000 8381 100.000 1 4538 1 chr3D.!!$R1 4537
1 TraesCS3D01G153400 chr3A 127088019 127091699 3680 True 2602.500000 4970 91.201 9 3853 2 chr3A.!!$R2 3844
2 TraesCS3D01G153400 chr5B 507795338 507798000 2662 False 674.666667 1445 87.879 2620 4466 3 chr5B.!!$F1 1846
3 TraesCS3D01G153400 chr6D 452124416 452124942 526 False 556.000000 556 86.055 3983 4514 1 chr6D.!!$F1 531
4 TraesCS3D01G153400 chr1B 642060894 642061656 762 False 488.000000 488 78.562 2164 2949 1 chr1B.!!$F1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 262 0.038709 CAGGCTATCCTCGCTGCTAC 60.039 60.0 0.00 0.0 41.93 3.58 F
1119 1130 0.109689 GTCTCCTCGTCGTCTTGGTG 60.110 60.0 0.00 0.0 0.00 4.17 F
2002 2020 0.542467 TTGGCTCCATTGGTGCATGT 60.542 50.0 26.21 0.0 43.12 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1705 1718 0.251297 CCCACCTGCACAAGAATCCA 60.251 55.000 0.0 0.0 0.00 3.41 R
2484 2518 0.179020 CTGGAGGTTGTTCCACTGCA 60.179 55.000 0.0 0.0 42.24 4.41 R
3618 3654 1.070445 CGGCAGATGGAGGATGACC 59.930 63.158 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 6.918892 TTATCACCTGTTCATAACCATTCG 57.081 37.500 0.00 0.00 0.00 3.34
64 65 4.545208 TCACCTGTTCATAACCATTCGA 57.455 40.909 0.00 0.00 0.00 3.71
84 85 0.178950 TGCGAGCTCCCTATCTCCAT 60.179 55.000 8.47 0.00 0.00 3.41
95 99 6.171026 TCCCTATCTCCATATGATCTCCAA 57.829 41.667 3.65 0.00 0.00 3.53
99 103 5.758790 ATCTCCATATGATCTCCAAGTGG 57.241 43.478 3.65 0.00 35.74 4.00
101 105 5.715921 TCTCCATATGATCTCCAAGTGGTA 58.284 41.667 3.65 0.00 35.83 3.25
108 112 5.916661 TGATCTCCAAGTGGTAGAGTTAC 57.083 43.478 0.00 0.00 36.34 2.50
110 114 5.185249 TGATCTCCAAGTGGTAGAGTTACAC 59.815 44.000 0.00 0.00 36.34 2.90
148 152 9.010029 TGATCTTTAATTCTAGGTGGTCAAAAC 57.990 33.333 0.00 0.00 0.00 2.43
162 166 3.293337 GTCAAAACCAACCCTACCAACT 58.707 45.455 0.00 0.00 0.00 3.16
165 169 3.503800 AAACCAACCCTACCAACTCTC 57.496 47.619 0.00 0.00 0.00 3.20
204 215 2.358737 GAACGGACCTGCACCCAG 60.359 66.667 0.00 0.00 38.85 4.45
205 216 3.168528 AACGGACCTGCACCCAGT 61.169 61.111 0.00 0.00 37.38 4.00
215 226 2.749682 CACCCAGTGCTGTAGCCA 59.250 61.111 0.80 0.00 41.18 4.75
216 227 1.376424 CACCCAGTGCTGTAGCCAG 60.376 63.158 0.80 0.00 41.18 4.85
217 228 1.536418 ACCCAGTGCTGTAGCCAGA 60.536 57.895 0.80 0.00 41.50 3.86
218 229 1.127567 ACCCAGTGCTGTAGCCAGAA 61.128 55.000 0.80 0.00 41.50 3.02
221 232 2.105477 CCCAGTGCTGTAGCCAGAATAT 59.895 50.000 0.80 0.00 41.50 1.28
223 234 3.070734 CCAGTGCTGTAGCCAGAATATCT 59.929 47.826 0.80 0.00 41.50 1.98
224 235 4.056740 CAGTGCTGTAGCCAGAATATCTG 58.943 47.826 0.80 0.32 43.91 2.90
225 236 2.805099 GTGCTGTAGCCAGAATATCTGC 59.195 50.000 0.80 0.00 42.98 4.26
226 237 2.435437 TGCTGTAGCCAGAATATCTGCA 59.565 45.455 0.80 0.00 42.98 4.41
227 238 3.072038 TGCTGTAGCCAGAATATCTGCAT 59.928 43.478 0.80 0.00 42.98 3.96
228 239 3.436015 GCTGTAGCCAGAATATCTGCATG 59.564 47.826 1.79 0.00 42.98 4.06
229 240 3.405831 TGTAGCCAGAATATCTGCATGC 58.594 45.455 11.82 11.82 42.98 4.06
230 241 1.906990 AGCCAGAATATCTGCATGCC 58.093 50.000 16.68 0.00 42.98 4.40
231 242 0.886563 GCCAGAATATCTGCATGCCC 59.113 55.000 16.68 0.00 42.98 5.36
232 243 1.542492 CCAGAATATCTGCATGCCCC 58.458 55.000 16.68 0.00 42.98 5.80
233 244 1.202964 CCAGAATATCTGCATGCCCCA 60.203 52.381 16.68 0.00 42.98 4.96
234 245 2.160205 CAGAATATCTGCATGCCCCAG 58.840 52.381 16.68 6.17 37.72 4.45
235 246 1.075050 AGAATATCTGCATGCCCCAGG 59.925 52.381 16.68 0.34 0.00 4.45
245 256 4.321966 GCCCCAGGCTATCCTCGC 62.322 72.222 0.00 0.00 46.69 5.03
246 257 2.525381 CCCCAGGCTATCCTCGCT 60.525 66.667 0.00 0.00 41.93 4.93
247 258 2.739784 CCCAGGCTATCCTCGCTG 59.260 66.667 0.00 0.00 41.93 5.18
248 259 2.030262 CCAGGCTATCCTCGCTGC 59.970 66.667 0.00 0.00 41.93 5.25
249 260 2.506061 CCAGGCTATCCTCGCTGCT 61.506 63.158 0.00 0.00 41.93 4.24
250 261 1.181741 CCAGGCTATCCTCGCTGCTA 61.182 60.000 0.00 0.00 41.93 3.49
251 262 0.038709 CAGGCTATCCTCGCTGCTAC 60.039 60.000 0.00 0.00 41.93 3.58
252 263 0.468214 AGGCTATCCTCGCTGCTACA 60.468 55.000 0.00 0.00 38.72 2.74
253 264 0.038709 GGCTATCCTCGCTGCTACAG 60.039 60.000 0.00 0.00 34.12 2.74
254 265 0.671251 GCTATCCTCGCTGCTACAGT 59.329 55.000 0.00 0.00 33.43 3.55
255 266 1.601663 GCTATCCTCGCTGCTACAGTG 60.602 57.143 1.73 1.73 42.60 3.66
256 267 1.678627 CTATCCTCGCTGCTACAGTGT 59.321 52.381 0.00 0.00 41.99 3.55
257 268 0.457851 ATCCTCGCTGCTACAGTGTC 59.542 55.000 0.00 0.00 41.99 3.67
258 269 1.153745 CCTCGCTGCTACAGTGTCC 60.154 63.158 0.00 0.00 41.99 4.02
259 270 1.586541 CTCGCTGCTACAGTGTCCA 59.413 57.895 0.00 0.00 41.99 4.02
260 271 0.734253 CTCGCTGCTACAGTGTCCAC 60.734 60.000 0.00 0.00 41.99 4.02
261 272 1.179174 TCGCTGCTACAGTGTCCACT 61.179 55.000 0.00 0.00 41.99 4.00
272 283 3.662247 AGTGTCCACTGTAGCTACAAC 57.338 47.619 25.95 20.65 40.75 3.32
273 284 2.963101 AGTGTCCACTGTAGCTACAACA 59.037 45.455 25.95 22.77 40.75 3.33
274 285 3.578716 AGTGTCCACTGTAGCTACAACAT 59.421 43.478 25.95 12.72 40.75 2.71
275 286 3.679980 GTGTCCACTGTAGCTACAACATG 59.320 47.826 25.95 21.84 35.50 3.21
276 287 3.323691 TGTCCACTGTAGCTACAACATGT 59.676 43.478 25.95 17.57 35.50 3.21
277 288 3.679980 GTCCACTGTAGCTACAACATGTG 59.320 47.826 25.95 25.88 35.50 3.21
278 289 3.576550 TCCACTGTAGCTACAACATGTGA 59.423 43.478 30.73 21.58 35.50 3.58
279 290 3.679980 CCACTGTAGCTACAACATGTGAC 59.320 47.826 30.73 7.16 35.50 3.67
280 291 4.560128 CACTGTAGCTACAACATGTGACT 58.440 43.478 27.52 3.02 35.50 3.41
281 292 4.386954 CACTGTAGCTACAACATGTGACTG 59.613 45.833 27.52 15.95 35.50 3.51
282 293 4.039245 ACTGTAGCTACAACATGTGACTGT 59.961 41.667 25.95 13.85 35.50 3.55
283 294 5.243060 ACTGTAGCTACAACATGTGACTGTA 59.757 40.000 25.95 3.79 35.50 2.74
284 295 5.709966 TGTAGCTACAACATGTGACTGTAG 58.290 41.667 24.15 23.25 43.51 2.74
285 296 5.475564 TGTAGCTACAACATGTGACTGTAGA 59.524 40.000 28.42 13.69 43.40 2.59
286 297 5.065704 AGCTACAACATGTGACTGTAGAG 57.934 43.478 28.42 14.24 43.40 2.43
287 298 3.614616 GCTACAACATGTGACTGTAGAGC 59.385 47.826 28.42 18.62 43.40 4.09
288 299 4.619394 GCTACAACATGTGACTGTAGAGCT 60.619 45.833 28.42 0.00 43.40 4.09
289 300 5.393135 GCTACAACATGTGACTGTAGAGCTA 60.393 44.000 28.42 4.32 43.40 3.32
290 301 5.468540 ACAACATGTGACTGTAGAGCTAA 57.531 39.130 0.00 0.00 0.00 3.09
291 302 5.853936 ACAACATGTGACTGTAGAGCTAAA 58.146 37.500 0.00 0.00 0.00 1.85
292 303 6.288294 ACAACATGTGACTGTAGAGCTAAAA 58.712 36.000 0.00 0.00 0.00 1.52
293 304 6.936900 ACAACATGTGACTGTAGAGCTAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
294 305 7.445402 ACAACATGTGACTGTAGAGCTAAAATT 59.555 33.333 0.00 0.00 0.00 1.82
295 306 8.935844 CAACATGTGACTGTAGAGCTAAAATTA 58.064 33.333 0.00 0.00 0.00 1.40
296 307 9.502091 AACATGTGACTGTAGAGCTAAAATTAA 57.498 29.630 0.00 0.00 0.00 1.40
297 308 8.936864 ACATGTGACTGTAGAGCTAAAATTAAC 58.063 33.333 0.00 0.00 0.00 2.01
298 309 7.576750 TGTGACTGTAGAGCTAAAATTAACG 57.423 36.000 0.00 0.00 0.00 3.18
299 310 7.372714 TGTGACTGTAGAGCTAAAATTAACGA 58.627 34.615 0.00 0.00 0.00 3.85
300 311 7.868922 TGTGACTGTAGAGCTAAAATTAACGAA 59.131 33.333 0.00 0.00 0.00 3.85
301 312 8.373992 GTGACTGTAGAGCTAAAATTAACGAAG 58.626 37.037 0.00 0.00 0.00 3.79
302 313 7.544566 TGACTGTAGAGCTAAAATTAACGAAGG 59.455 37.037 0.00 0.00 0.00 3.46
303 314 7.384477 ACTGTAGAGCTAAAATTAACGAAGGT 58.616 34.615 0.00 0.00 0.00 3.50
304 315 7.876582 ACTGTAGAGCTAAAATTAACGAAGGTT 59.123 33.333 0.00 0.00 40.20 3.50
305 316 8.611654 TGTAGAGCTAAAATTAACGAAGGTTT 57.388 30.769 0.00 0.00 37.58 3.27
306 317 9.059260 TGTAGAGCTAAAATTAACGAAGGTTTT 57.941 29.630 0.00 0.00 37.58 2.43
307 318 9.539139 GTAGAGCTAAAATTAACGAAGGTTTTC 57.461 33.333 0.00 0.00 37.58 2.29
308 319 8.161699 AGAGCTAAAATTAACGAAGGTTTTCA 57.838 30.769 0.00 0.00 37.58 2.69
309 320 8.074370 AGAGCTAAAATTAACGAAGGTTTTCAC 58.926 33.333 0.00 0.00 37.58 3.18
310 321 7.143340 AGCTAAAATTAACGAAGGTTTTCACC 58.857 34.615 0.00 0.00 44.67 4.02
318 329 2.335011 GGTTTTCACCAGCACGCC 59.665 61.111 0.00 0.00 43.61 5.68
319 330 2.193536 GGTTTTCACCAGCACGCCT 61.194 57.895 0.00 0.00 43.61 5.52
320 331 1.282875 GTTTTCACCAGCACGCCTC 59.717 57.895 0.00 0.00 0.00 4.70
321 332 1.153066 TTTTCACCAGCACGCCTCA 60.153 52.632 0.00 0.00 0.00 3.86
322 333 1.165907 TTTTCACCAGCACGCCTCAG 61.166 55.000 0.00 0.00 0.00 3.35
323 334 3.535629 TTCACCAGCACGCCTCAGG 62.536 63.158 0.00 0.00 0.00 3.86
366 377 3.908737 GGCTACGCCCCTACAATAG 57.091 57.895 0.00 0.00 44.06 1.73
367 378 1.335145 GGCTACGCCCCTACAATAGA 58.665 55.000 0.00 0.00 44.06 1.98
445 456 9.596308 TCTATAGAGTAATAAAGCCCACATACA 57.404 33.333 0.00 0.00 0.00 2.29
450 461 6.900194 AGTAATAAAGCCCACATACATGACT 58.100 36.000 0.00 0.00 0.00 3.41
457 468 2.700371 CCCACATACATGACTCAGCCTA 59.300 50.000 0.00 0.00 0.00 3.93
458 469 3.244009 CCCACATACATGACTCAGCCTAG 60.244 52.174 0.00 0.00 0.00 3.02
487 498 1.143620 AAACCGAACGTCCGAACCA 59.856 52.632 0.00 0.00 0.00 3.67
493 504 2.091102 GAACGTCCGAACCAGGGTCA 62.091 60.000 5.03 0.00 0.00 4.02
512 523 4.331717 GGTCAGTCCATTTATGTAACACCG 59.668 45.833 0.00 0.00 35.97 4.94
516 527 4.155280 AGTCCATTTATGTAACACCGCAAC 59.845 41.667 0.00 0.00 0.00 4.17
534 545 7.754924 CACCGCAACAATAAAACTTTAGATGAT 59.245 33.333 5.34 0.00 0.00 2.45
564 575 7.668525 ACTTCGTAAATTTTTCCGAGATCTT 57.331 32.000 0.00 0.00 0.00 2.40
568 579 8.712285 TCGTAAATTTTTCCGAGATCTTGTAT 57.288 30.769 9.19 0.00 0.00 2.29
644 655 8.293699 ACACCCTTAGATCCAAATTAATTGAC 57.706 34.615 0.39 0.00 41.85 3.18
645 656 7.893302 ACACCCTTAGATCCAAATTAATTGACA 59.107 33.333 0.39 0.00 41.85 3.58
702 713 4.037684 AGAGGCTGCATCAATTAATTCAGC 59.962 41.667 22.31 22.31 44.26 4.26
706 717 5.107133 GCTGCATCAATTAATTCAGCTTGT 58.893 37.500 22.78 0.00 42.41 3.16
754 765 6.758416 TGAAATCATGAAACTCGGATACTCTG 59.242 38.462 0.00 0.00 0.00 3.35
758 769 6.464222 TCATGAAACTCGGATACTCTGTTTT 58.536 36.000 0.00 0.00 33.40 2.43
783 794 3.279434 ACCGAAGAAATTAGGGTGCATC 58.721 45.455 0.00 0.00 0.00 3.91
833 844 1.640428 TTTCGAGATGTGCACGATCC 58.360 50.000 13.13 9.21 39.29 3.36
835 846 2.580470 CGAGATGTGCACGATCCGC 61.580 63.158 13.13 10.02 31.96 5.54
847 858 0.305922 CGATCCGCCTCATTTGCTTC 59.694 55.000 0.00 0.00 0.00 3.86
849 860 0.753111 ATCCGCCTCATTTGCTTCCC 60.753 55.000 0.00 0.00 0.00 3.97
863 874 5.913137 TTGCTTCCCAATATTTAGTGTGG 57.087 39.130 0.00 0.00 0.00 4.17
868 879 4.981806 CCCAATATTTAGTGTGGGTGTG 57.018 45.455 0.00 0.00 44.94 3.82
869 880 4.340617 CCCAATATTTAGTGTGGGTGTGT 58.659 43.478 0.00 0.00 44.94 3.72
870 881 4.157656 CCCAATATTTAGTGTGGGTGTGTG 59.842 45.833 0.00 0.00 44.94 3.82
886 897 2.928757 TGTGTGTTTTCATTTGTGCAGC 59.071 40.909 0.00 0.00 0.00 5.25
911 922 6.238842 CCACCATTTAGATAGCCAACAGATTG 60.239 42.308 0.00 0.00 35.40 2.67
912 923 6.319658 CACCATTTAGATAGCCAACAGATTGT 59.680 38.462 0.00 0.00 33.60 2.71
914 925 8.052748 ACCATTTAGATAGCCAACAGATTGTAA 58.947 33.333 0.00 0.00 33.60 2.41
915 926 8.345565 CCATTTAGATAGCCAACAGATTGTAAC 58.654 37.037 0.00 0.00 33.60 2.50
916 927 7.859325 TTTAGATAGCCAACAGATTGTAACC 57.141 36.000 0.00 0.00 33.60 2.85
917 928 4.781934 AGATAGCCAACAGATTGTAACCC 58.218 43.478 0.00 0.00 33.60 4.11
918 929 4.475016 AGATAGCCAACAGATTGTAACCCT 59.525 41.667 0.00 0.00 33.60 4.34
919 930 2.795329 AGCCAACAGATTGTAACCCTG 58.205 47.619 0.00 0.00 33.60 4.45
920 931 2.108250 AGCCAACAGATTGTAACCCTGT 59.892 45.455 0.00 0.00 42.34 4.00
921 932 2.488153 GCCAACAGATTGTAACCCTGTC 59.512 50.000 0.00 0.00 39.93 3.51
922 933 3.810743 GCCAACAGATTGTAACCCTGTCT 60.811 47.826 0.00 0.00 39.93 3.41
923 934 4.564821 GCCAACAGATTGTAACCCTGTCTA 60.565 45.833 0.00 0.00 39.93 2.59
924 935 5.556915 CCAACAGATTGTAACCCTGTCTAA 58.443 41.667 0.00 0.00 39.93 2.10
925 936 5.643777 CCAACAGATTGTAACCCTGTCTAAG 59.356 44.000 0.00 0.00 39.93 2.18
952 963 2.747855 CTCCGCCACCTTTGAGCC 60.748 66.667 0.00 0.00 0.00 4.70
960 971 2.269241 CCTTTGAGCCCCGTCCTC 59.731 66.667 0.00 0.00 0.00 3.71
974 985 1.304217 TCCTCGCGTCCTCTTCCTT 60.304 57.895 5.77 0.00 0.00 3.36
1006 1017 4.065088 CACGCTATAAATACACATGCCCT 58.935 43.478 0.00 0.00 0.00 5.19
1007 1018 4.515191 CACGCTATAAATACACATGCCCTT 59.485 41.667 0.00 0.00 0.00 3.95
1035 1046 1.000396 AGCTCCCATCCAAAGCACC 60.000 57.895 0.00 0.00 38.51 5.01
1037 1048 1.318158 GCTCCCATCCAAAGCACCAG 61.318 60.000 0.00 0.00 36.06 4.00
1110 1121 0.755698 TAGCCATGGGTCTCCTCGTC 60.756 60.000 22.15 0.00 0.00 4.20
1112 1123 2.052690 CCATGGGTCTCCTCGTCGT 61.053 63.158 2.85 0.00 0.00 4.34
1119 1130 0.109689 GTCTCCTCGTCGTCTTGGTG 60.110 60.000 0.00 0.00 0.00 4.17
1123 1134 1.284982 CCTCGTCGTCTTGGTGCTTG 61.285 60.000 0.00 0.00 0.00 4.01
1275 1286 3.003763 AGGTCCAACTCCGGCCTC 61.004 66.667 0.00 0.00 29.69 4.70
1278 1289 3.003173 TCCAACTCCGGCCTCCAG 61.003 66.667 0.00 0.00 0.00 3.86
1304 1315 2.361865 GGCCAACGGGGTATGCAA 60.362 61.111 0.00 0.00 39.65 4.08
1328 1339 4.293415 CGCCTATTGCAAATCTCAAATCC 58.707 43.478 1.71 0.00 41.33 3.01
1352 1363 5.640732 GGGTGCAACTAATTAATCTGTGTG 58.359 41.667 0.00 0.00 36.74 3.82
1384 1397 7.054491 ACATTAACTTCTGCATTTTCCAACT 57.946 32.000 0.00 0.00 0.00 3.16
1396 1409 3.703001 TTTCCAACTCAGGTGGATCTC 57.297 47.619 13.82 0.00 0.00 2.75
1493 1506 4.883300 GCGTCCTCGAGTACGGCG 62.883 72.222 28.28 19.10 39.46 6.46
1683 1696 2.651232 GCGCGTAGTCGGTAGCTG 60.651 66.667 8.43 0.00 37.56 4.24
1699 1712 0.721718 GCTGACCAAGTGTACGCATC 59.278 55.000 9.48 1.50 0.00 3.91
1705 1718 2.094182 ACCAAGTGTACGCATCTCGAAT 60.094 45.455 9.48 0.00 41.67 3.34
1712 1725 2.898729 ACGCATCTCGAATGGATTCT 57.101 45.000 8.86 0.00 41.67 2.40
1735 1748 2.200370 AGGTGGGAGACGGTGACA 59.800 61.111 0.00 0.00 0.00 3.58
1899 1912 2.195567 CCCGGGATACGCGAACCTA 61.196 63.158 18.48 0.00 42.31 3.08
1928 1941 1.064758 ACACTCCAAGCAGGTTTGTCA 60.065 47.619 0.00 0.00 39.02 3.58
1932 1945 2.023673 TCCAAGCAGGTTTGTCAGTTG 58.976 47.619 0.00 0.00 39.02 3.16
1962 1980 4.139786 ACCATCCAAGATGAAATGATCCG 58.860 43.478 6.15 0.00 0.00 4.18
1967 1985 5.240891 TCCAAGATGAAATGATCCGATAGC 58.759 41.667 0.00 0.00 0.00 2.97
1970 1988 4.829968 AGATGAAATGATCCGATAGCTGG 58.170 43.478 0.00 0.00 0.00 4.85
1975 1993 2.971901 TGATCCGATAGCTGGTCCTA 57.028 50.000 0.00 0.00 0.00 2.94
1988 2006 3.690460 CTGGTCCTAATGTTTCTTGGCT 58.310 45.455 0.00 0.00 0.00 4.75
1998 2016 0.968405 TTTCTTGGCTCCATTGGTGC 59.032 50.000 19.19 19.19 40.94 5.01
2002 2020 0.542467 TTGGCTCCATTGGTGCATGT 60.542 50.000 26.21 0.00 43.12 3.21
2016 2034 2.486982 GTGCATGTCTCAGCTGTTTGAT 59.513 45.455 14.67 0.00 0.00 2.57
2030 2048 2.356382 TGTTTGATTTCGCCGACAAGTT 59.644 40.909 0.00 0.00 0.00 2.66
2059 2077 3.076258 TACGACGCCAGCATCCCTG 62.076 63.158 0.00 0.00 41.41 4.45
2070 2088 1.299648 CATCCCTGTGGCGAGGAAA 59.700 57.895 3.98 0.00 34.69 3.13
2151 2185 1.808133 GCATCCCGTCTTGATCTGGTC 60.808 57.143 0.00 0.00 0.00 4.02
2152 2186 0.747255 ATCCCGTCTTGATCTGGTCG 59.253 55.000 0.00 0.00 0.00 4.79
2161 2195 3.446161 TCTTGATCTGGTCGTTAATCCGT 59.554 43.478 0.00 0.00 0.00 4.69
2182 2216 1.595929 GGTGCGGTTTCAGGACGAA 60.596 57.895 0.00 0.00 0.00 3.85
2483 2517 1.220749 GGCGGCCTCTTGTATCACA 59.779 57.895 12.87 0.00 0.00 3.58
2484 2518 0.179045 GGCGGCCTCTTGTATCACAT 60.179 55.000 12.87 0.00 0.00 3.21
2741 2775 1.810030 GCGTCCATCGTGTCCTTCC 60.810 63.158 0.00 0.00 42.13 3.46
2914 2949 1.677633 GGCGCCCACCTACAACAAT 60.678 57.895 18.11 0.00 0.00 2.71
2989 3024 4.678574 CGGTCAATTCCAGATGGTACGTAA 60.679 45.833 0.00 0.00 36.34 3.18
2991 3026 4.266976 GTCAATTCCAGATGGTACGTAACG 59.733 45.833 6.07 0.00 36.34 3.18
2992 3027 4.082081 TCAATTCCAGATGGTACGTAACGT 60.082 41.667 4.67 4.67 44.35 3.99
3132 3168 2.307496 ACCCAACATCATGGCTTTCA 57.693 45.000 0.00 0.00 39.26 2.69
3170 3206 8.340443 AGTAACAGAGTTTTCGTCATTTTTACC 58.660 33.333 0.00 0.00 0.00 2.85
3171 3207 5.744490 ACAGAGTTTTCGTCATTTTTACCG 58.256 37.500 0.00 0.00 0.00 4.02
3209 3245 5.244178 ACGACTAACTCTTGATTCTTCACCT 59.756 40.000 0.00 0.00 0.00 4.00
3219 3255 1.495584 TTCTTCACCTTGTGCGCGTC 61.496 55.000 8.43 0.00 32.98 5.19
3239 3275 3.706373 AGCCGGCGATCAAGGTGT 61.706 61.111 23.20 0.00 0.00 4.16
3377 3413 2.184322 GCTGTTCCTCGGCATCGA 59.816 61.111 0.00 0.00 46.78 3.59
3379 3415 1.215382 CTGTTCCTCGGCATCGACA 59.785 57.895 0.00 0.00 40.88 4.35
3434 3470 2.267642 GTATGGCCACGTGCTCCA 59.732 61.111 23.82 23.82 40.92 3.86
3618 3654 3.017442 TGGGTCTAGTGACAATCTCTCG 58.983 50.000 0.00 0.00 44.61 4.04
3631 3667 1.988293 TCTCTCGGTCATCCTCCATC 58.012 55.000 0.00 0.00 0.00 3.51
3714 3759 7.175990 GGTTGAAAATGTAAGAGGAATGGTGTA 59.824 37.037 0.00 0.00 0.00 2.90
3715 3760 8.739972 GTTGAAAATGTAAGAGGAATGGTGTAT 58.260 33.333 0.00 0.00 0.00 2.29
3716 3761 8.877864 TGAAAATGTAAGAGGAATGGTGTATT 57.122 30.769 0.00 0.00 0.00 1.89
3727 3772 3.757745 ATGGTGTATTTGTTGCGCTAC 57.242 42.857 15.28 15.28 0.00 3.58
3887 4247 7.328249 CCAAAAGCTTTGTATTTATTTCGCTGA 59.672 33.333 13.54 0.00 0.00 4.26
3893 4253 5.973651 TGTATTTATTTCGCTGAGCTCTG 57.026 39.130 16.19 15.96 0.00 3.35
3894 4254 5.419542 TGTATTTATTTCGCTGAGCTCTGT 58.580 37.500 20.24 4.45 0.00 3.41
3895 4255 6.569780 TGTATTTATTTCGCTGAGCTCTGTA 58.430 36.000 20.24 7.87 0.00 2.74
3896 4256 5.975410 ATTTATTTCGCTGAGCTCTGTAC 57.025 39.130 20.24 5.48 0.00 2.90
3926 4850 0.250901 GAAGTTCCTCTGGCAGGCAA 60.251 55.000 15.73 2.09 43.08 4.52
3929 4853 1.211457 AGTTCCTCTGGCAGGCAATAG 59.789 52.381 15.73 3.79 43.08 1.73
3937 4861 3.448301 TCTGGCAGGCAATAGAAATTTGG 59.552 43.478 15.73 0.00 0.00 3.28
3938 4862 2.093553 TGGCAGGCAATAGAAATTTGGC 60.094 45.455 0.00 2.13 46.68 4.52
3966 4890 9.153952 GAATGCCTTTAAAAATGAAAACGTTTC 57.846 29.630 15.01 8.59 0.00 2.78
3968 4892 7.680062 TGCCTTTAAAAATGAAAACGTTTCTG 58.320 30.769 15.01 0.00 0.00 3.02
3969 4893 7.123190 GCCTTTAAAAATGAAAACGTTTCTGG 58.877 34.615 15.01 4.54 0.00 3.86
3976 4900 3.082548 TGAAAACGTTTCTGGTGTTCCA 58.917 40.909 15.01 0.00 42.05 3.53
3977 4901 3.506455 TGAAAACGTTTCTGGTGTTCCAA 59.494 39.130 15.01 0.00 43.81 3.53
3978 4902 4.022242 TGAAAACGTTTCTGGTGTTCCAAA 60.022 37.500 15.01 0.00 43.81 3.28
3979 4903 4.729227 AAACGTTTCTGGTGTTCCAAAT 57.271 36.364 7.96 0.00 43.81 2.32
3980 4904 5.838531 AAACGTTTCTGGTGTTCCAAATA 57.161 34.783 7.96 0.00 43.81 1.40
3981 4905 5.432885 AACGTTTCTGGTGTTCCAAATAG 57.567 39.130 0.00 0.00 43.81 1.73
4108 5032 4.908601 TCCAAGTAGGACAATGACACAT 57.091 40.909 0.00 0.00 43.07 3.21
4109 5033 4.832248 TCCAAGTAGGACAATGACACATC 58.168 43.478 0.00 0.00 43.07 3.06
4110 5034 3.941483 CCAAGTAGGACAATGACACATCC 59.059 47.826 0.00 0.00 41.22 3.51
4111 5035 4.565444 CCAAGTAGGACAATGACACATCCA 60.565 45.833 4.70 0.00 41.22 3.41
4131 5055 2.798283 CAACAAGCCTGTGCAAATTCAG 59.202 45.455 0.00 0.00 41.13 3.02
4258 5185 2.309528 TCTATTGTGGGTTAGCAGCG 57.690 50.000 0.00 0.00 0.00 5.18
4264 5191 1.335496 TGTGGGTTAGCAGCGAAAAAC 59.665 47.619 0.00 0.00 0.00 2.43
4328 5256 0.895100 GCAGGAATGACAGTGGCCAA 60.895 55.000 7.24 0.00 0.00 4.52
4330 5258 1.475280 CAGGAATGACAGTGGCCAATG 59.525 52.381 30.60 30.60 0.00 2.82
4452 5384 6.701145 AAGACACTTTCCTTCTTTCTTTCC 57.299 37.500 0.00 0.00 0.00 3.13
4474 5406 3.488048 GTTGCAAACCATAAGCGCA 57.512 47.368 11.47 0.00 42.21 6.09
4475 5407 1.994916 GTTGCAAACCATAAGCGCAT 58.005 45.000 11.47 0.00 42.21 4.73
4476 5408 2.336667 GTTGCAAACCATAAGCGCATT 58.663 42.857 11.47 3.50 42.21 3.56
4478 5410 1.271934 TGCAAACCATAAGCGCATTGT 59.728 42.857 11.47 0.00 0.00 2.71
4481 5413 4.715983 CCATAAGCGCATTGTGGC 57.284 55.556 11.47 0.00 42.46 5.01
4499 5438 1.003116 GGCGAATGTGATCATGAGCAC 60.003 52.381 32.01 32.01 46.94 4.40
4501 5440 1.600957 CGAATGTGATCATGAGCACCC 59.399 52.381 34.30 23.51 46.28 4.61
4502 5441 2.646930 GAATGTGATCATGAGCACCCA 58.353 47.619 34.30 21.34 46.28 4.51
4525 5464 4.900635 CAGTATGCCCTTGATGGTAAAC 57.099 45.455 0.00 0.00 0.00 2.01
4526 5465 4.269183 CAGTATGCCCTTGATGGTAAACA 58.731 43.478 0.00 0.00 0.00 2.83
4527 5466 4.096382 CAGTATGCCCTTGATGGTAAACAC 59.904 45.833 0.00 0.00 0.00 3.32
4528 5467 2.969821 TGCCCTTGATGGTAAACACT 57.030 45.000 0.00 0.00 0.00 3.55
4529 5468 4.584638 ATGCCCTTGATGGTAAACACTA 57.415 40.909 0.00 0.00 0.00 2.74
4530 5469 3.950397 TGCCCTTGATGGTAAACACTAG 58.050 45.455 0.00 0.00 0.00 2.57
4531 5470 2.683362 GCCCTTGATGGTAAACACTAGC 59.317 50.000 0.00 0.00 0.00 3.42
4532 5471 3.872240 GCCCTTGATGGTAAACACTAGCA 60.872 47.826 0.00 0.00 0.00 3.49
4533 5472 4.331968 CCCTTGATGGTAAACACTAGCAA 58.668 43.478 0.00 0.00 0.00 3.91
4534 5473 4.396166 CCCTTGATGGTAAACACTAGCAAG 59.604 45.833 10.89 10.89 32.10 4.01
4535 5474 5.003804 CCTTGATGGTAAACACTAGCAAGT 58.996 41.667 14.99 0.00 35.91 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.693739 ATGGTTATGAACAGGTGATAAAATACA 57.306 29.630 0.00 0.00 0.00 2.29
37 38 8.405531 CGAATGGTTATGAACAGGTGATAAAAT 58.594 33.333 0.00 0.00 0.00 1.82
48 49 3.526534 TCGCATCGAATGGTTATGAACA 58.473 40.909 0.00 0.00 31.06 3.18
63 64 0.530288 GGAGATAGGGAGCTCGCATC 59.470 60.000 29.95 26.07 39.11 3.91
64 65 0.178950 TGGAGATAGGGAGCTCGCAT 60.179 55.000 29.95 20.77 39.11 4.73
84 85 7.068348 GTGTAACTCTACCACTTGGAGATCATA 59.932 40.741 1.14 0.00 38.94 2.15
95 99 3.255634 ACCTGGTGTAACTCTACCACT 57.744 47.619 0.00 0.00 41.80 4.00
99 103 6.708949 TCAATGAAAACCTGGTGTAACTCTAC 59.291 38.462 0.00 0.00 36.74 2.59
101 105 5.690865 TCAATGAAAACCTGGTGTAACTCT 58.309 37.500 0.00 0.00 36.74 3.24
108 112 9.143631 GAATTAAAGATCAATGAAAACCTGGTG 57.856 33.333 0.00 0.00 0.00 4.17
148 152 2.027100 GGAAGAGAGTTGGTAGGGTTGG 60.027 54.545 0.00 0.00 0.00 3.77
162 166 0.040646 TGGACCGGCTAAGGAAGAGA 59.959 55.000 0.00 0.00 34.73 3.10
165 169 1.153349 GCTGGACCGGCTAAGGAAG 60.153 63.158 18.66 0.00 32.24 3.46
204 215 2.805099 GCAGATATTCTGGCTACAGCAC 59.195 50.000 3.24 0.00 44.43 4.40
205 216 2.435437 TGCAGATATTCTGGCTACAGCA 59.565 45.455 3.24 0.00 44.43 4.41
207 218 3.436015 GCATGCAGATATTCTGGCTACAG 59.564 47.826 14.21 0.00 44.43 2.74
208 219 3.405831 GCATGCAGATATTCTGGCTACA 58.594 45.455 14.21 0.00 44.43 2.74
210 221 2.290514 GGGCATGCAGATATTCTGGCTA 60.291 50.000 21.36 0.00 44.43 3.93
211 222 1.547223 GGGCATGCAGATATTCTGGCT 60.547 52.381 21.36 0.00 44.43 4.75
212 223 0.886563 GGGCATGCAGATATTCTGGC 59.113 55.000 21.36 0.00 44.43 4.85
213 224 1.202964 TGGGGCATGCAGATATTCTGG 60.203 52.381 21.36 0.00 44.43 3.86
214 225 2.160205 CTGGGGCATGCAGATATTCTG 58.840 52.381 21.36 0.08 46.90 3.02
215 226 1.075050 CCTGGGGCATGCAGATATTCT 59.925 52.381 21.36 0.00 0.00 2.40
216 227 1.542492 CCTGGGGCATGCAGATATTC 58.458 55.000 21.36 0.00 0.00 1.75
217 228 3.759865 CCTGGGGCATGCAGATATT 57.240 52.632 21.36 0.00 0.00 1.28
233 244 4.992881 ACTGTAGCAGCGAGGATAGCCT 62.993 54.545 0.00 0.00 40.57 4.58
234 245 0.038709 CTGTAGCAGCGAGGATAGCC 60.039 60.000 0.00 0.00 37.48 3.93
235 246 0.671251 ACTGTAGCAGCGAGGATAGC 59.329 55.000 0.00 0.00 34.37 2.97
236 247 1.678627 ACACTGTAGCAGCGAGGATAG 59.321 52.381 0.00 0.00 34.37 2.08
237 248 1.676529 GACACTGTAGCAGCGAGGATA 59.323 52.381 0.00 0.00 34.37 2.59
238 249 0.457851 GACACTGTAGCAGCGAGGAT 59.542 55.000 0.00 0.00 34.37 3.24
239 250 1.595993 GGACACTGTAGCAGCGAGGA 61.596 60.000 0.00 0.00 34.37 3.71
240 251 1.153745 GGACACTGTAGCAGCGAGG 60.154 63.158 0.00 0.00 34.37 4.63
241 252 0.734253 GTGGACACTGTAGCAGCGAG 60.734 60.000 0.00 0.00 34.37 5.03
242 253 1.179174 AGTGGACACTGTAGCAGCGA 61.179 55.000 3.82 0.00 40.75 4.93
243 254 1.290324 AGTGGACACTGTAGCAGCG 59.710 57.895 3.82 0.00 40.75 5.18
252 263 2.963101 TGTTGTAGCTACAGTGGACACT 59.037 45.455 24.79 0.00 43.61 3.55
253 264 3.380479 TGTTGTAGCTACAGTGGACAC 57.620 47.619 24.79 19.13 37.52 3.67
254 265 3.323691 ACATGTTGTAGCTACAGTGGACA 59.676 43.478 24.17 24.17 37.52 4.02
255 266 3.679980 CACATGTTGTAGCTACAGTGGAC 59.320 47.826 25.39 21.19 37.52 4.02
256 267 3.576550 TCACATGTTGTAGCTACAGTGGA 59.423 43.478 29.20 21.61 37.52 4.02
257 268 3.679980 GTCACATGTTGTAGCTACAGTGG 59.320 47.826 29.20 21.31 37.52 4.00
258 269 4.386954 CAGTCACATGTTGTAGCTACAGTG 59.613 45.833 26.42 26.42 37.52 3.66
259 270 4.039245 ACAGTCACATGTTGTAGCTACAGT 59.961 41.667 24.79 17.00 37.52 3.55
260 271 4.560128 ACAGTCACATGTTGTAGCTACAG 58.440 43.478 24.79 16.38 37.52 2.74
261 272 4.600692 ACAGTCACATGTTGTAGCTACA 57.399 40.909 22.67 22.67 0.00 2.74
262 273 5.950883 TCTACAGTCACATGTTGTAGCTAC 58.049 41.667 22.96 17.30 42.40 3.58
263 274 5.393135 GCTCTACAGTCACATGTTGTAGCTA 60.393 44.000 22.96 11.80 42.40 3.32
264 275 4.619394 GCTCTACAGTCACATGTTGTAGCT 60.619 45.833 22.96 0.00 42.40 3.32
265 276 3.614616 GCTCTACAGTCACATGTTGTAGC 59.385 47.826 22.96 15.66 42.40 3.58
266 277 5.065704 AGCTCTACAGTCACATGTTGTAG 57.934 43.478 22.22 22.22 43.46 2.74
267 278 6.584185 TTAGCTCTACAGTCACATGTTGTA 57.416 37.500 8.26 8.26 34.56 2.41
268 279 5.468540 TTAGCTCTACAGTCACATGTTGT 57.531 39.130 6.86 6.86 34.56 3.32
269 280 6.785488 TTTTAGCTCTACAGTCACATGTTG 57.215 37.500 0.00 0.00 34.56 3.33
270 281 7.986085 AATTTTAGCTCTACAGTCACATGTT 57.014 32.000 0.00 0.00 34.56 2.71
271 282 8.936864 GTTAATTTTAGCTCTACAGTCACATGT 58.063 33.333 0.00 0.00 37.19 3.21
272 283 8.110612 CGTTAATTTTAGCTCTACAGTCACATG 58.889 37.037 0.00 0.00 0.00 3.21
273 284 8.033038 TCGTTAATTTTAGCTCTACAGTCACAT 58.967 33.333 0.00 0.00 0.00 3.21
274 285 7.372714 TCGTTAATTTTAGCTCTACAGTCACA 58.627 34.615 0.00 0.00 0.00 3.58
275 286 7.807687 TCGTTAATTTTAGCTCTACAGTCAC 57.192 36.000 0.00 0.00 0.00 3.67
276 287 7.544566 CCTTCGTTAATTTTAGCTCTACAGTCA 59.455 37.037 0.00 0.00 0.00 3.41
277 288 7.544915 ACCTTCGTTAATTTTAGCTCTACAGTC 59.455 37.037 0.00 0.00 0.00 3.51
278 289 7.384477 ACCTTCGTTAATTTTAGCTCTACAGT 58.616 34.615 0.00 0.00 0.00 3.55
279 290 7.829378 ACCTTCGTTAATTTTAGCTCTACAG 57.171 36.000 0.00 0.00 0.00 2.74
280 291 8.611654 AAACCTTCGTTAATTTTAGCTCTACA 57.388 30.769 0.00 0.00 0.00 2.74
281 292 9.539139 GAAAACCTTCGTTAATTTTAGCTCTAC 57.461 33.333 0.00 0.00 0.00 2.59
282 293 9.275398 TGAAAACCTTCGTTAATTTTAGCTCTA 57.725 29.630 0.00 0.00 33.94 2.43
283 294 8.074370 GTGAAAACCTTCGTTAATTTTAGCTCT 58.926 33.333 0.00 0.00 33.94 4.09
284 295 7.325338 GGTGAAAACCTTCGTTAATTTTAGCTC 59.675 37.037 0.00 0.00 33.94 4.09
285 296 7.143340 GGTGAAAACCTTCGTTAATTTTAGCT 58.857 34.615 0.00 0.00 33.94 3.32
286 297 6.919115 TGGTGAAAACCTTCGTTAATTTTAGC 59.081 34.615 0.00 0.00 33.94 3.09
287 298 7.114388 GCTGGTGAAAACCTTCGTTAATTTTAG 59.886 37.037 0.00 0.00 33.94 1.85
288 299 6.919115 GCTGGTGAAAACCTTCGTTAATTTTA 59.081 34.615 0.00 0.00 33.94 1.52
289 300 5.751509 GCTGGTGAAAACCTTCGTTAATTTT 59.248 36.000 0.00 0.00 33.94 1.82
290 301 5.163499 TGCTGGTGAAAACCTTCGTTAATTT 60.163 36.000 0.00 0.00 33.94 1.82
291 302 4.339814 TGCTGGTGAAAACCTTCGTTAATT 59.660 37.500 0.00 0.00 33.94 1.40
292 303 3.886505 TGCTGGTGAAAACCTTCGTTAAT 59.113 39.130 0.00 0.00 33.94 1.40
293 304 3.065648 GTGCTGGTGAAAACCTTCGTTAA 59.934 43.478 0.00 0.00 33.94 2.01
294 305 2.614983 GTGCTGGTGAAAACCTTCGTTA 59.385 45.455 0.00 0.00 33.94 3.18
295 306 1.404035 GTGCTGGTGAAAACCTTCGTT 59.596 47.619 0.00 0.00 33.94 3.85
296 307 1.021968 GTGCTGGTGAAAACCTTCGT 58.978 50.000 0.00 0.00 33.94 3.85
297 308 0.041312 CGTGCTGGTGAAAACCTTCG 60.041 55.000 0.00 0.00 33.94 3.79
298 309 0.317854 GCGTGCTGGTGAAAACCTTC 60.318 55.000 0.00 0.00 0.00 3.46
299 310 1.733526 GCGTGCTGGTGAAAACCTT 59.266 52.632 0.00 0.00 0.00 3.50
300 311 2.193536 GGCGTGCTGGTGAAAACCT 61.194 57.895 0.00 0.00 0.00 3.50
301 312 2.130073 GAGGCGTGCTGGTGAAAACC 62.130 60.000 0.00 0.00 0.00 3.27
302 313 1.282875 GAGGCGTGCTGGTGAAAAC 59.717 57.895 0.00 0.00 0.00 2.43
303 314 1.153066 TGAGGCGTGCTGGTGAAAA 60.153 52.632 0.00 0.00 0.00 2.29
304 315 1.597854 CTGAGGCGTGCTGGTGAAA 60.598 57.895 0.00 0.00 0.00 2.69
305 316 2.031012 CTGAGGCGTGCTGGTGAA 59.969 61.111 0.00 0.00 0.00 3.18
306 317 4.007644 CCTGAGGCGTGCTGGTGA 62.008 66.667 0.00 0.00 0.00 4.02
350 361 2.563179 AGCATCTATTGTAGGGGCGTAG 59.437 50.000 0.00 0.00 32.85 3.51
351 362 2.605257 AGCATCTATTGTAGGGGCGTA 58.395 47.619 0.00 0.00 32.85 4.42
352 363 1.424638 AGCATCTATTGTAGGGGCGT 58.575 50.000 0.00 0.00 32.85 5.68
353 364 2.550830 AAGCATCTATTGTAGGGGCG 57.449 50.000 0.00 0.00 32.85 6.13
354 365 3.328050 ACCTAAGCATCTATTGTAGGGGC 59.672 47.826 0.00 0.00 0.00 5.80
355 366 4.020128 GGACCTAAGCATCTATTGTAGGGG 60.020 50.000 0.00 0.00 0.00 4.79
356 367 4.593206 TGGACCTAAGCATCTATTGTAGGG 59.407 45.833 0.00 0.00 0.00 3.53
357 368 5.808366 TGGACCTAAGCATCTATTGTAGG 57.192 43.478 0.00 0.00 0.00 3.18
358 369 7.770897 AGTTTTGGACCTAAGCATCTATTGTAG 59.229 37.037 5.42 0.00 0.00 2.74
359 370 7.630082 AGTTTTGGACCTAAGCATCTATTGTA 58.370 34.615 5.42 0.00 0.00 2.41
360 371 6.485171 AGTTTTGGACCTAAGCATCTATTGT 58.515 36.000 5.42 0.00 0.00 2.71
361 372 7.552687 TGTAGTTTTGGACCTAAGCATCTATTG 59.447 37.037 5.42 0.00 0.00 1.90
362 373 7.630082 TGTAGTTTTGGACCTAAGCATCTATT 58.370 34.615 5.42 0.00 0.00 1.73
363 374 7.195374 TGTAGTTTTGGACCTAAGCATCTAT 57.805 36.000 5.42 0.00 0.00 1.98
364 375 6.614694 TGTAGTTTTGGACCTAAGCATCTA 57.385 37.500 5.42 0.00 0.00 1.98
365 376 5.499004 TGTAGTTTTGGACCTAAGCATCT 57.501 39.130 5.42 0.00 0.00 2.90
366 377 6.759497 ATTGTAGTTTTGGACCTAAGCATC 57.241 37.500 5.42 0.00 0.00 3.91
367 378 7.630082 TCTATTGTAGTTTTGGACCTAAGCAT 58.370 34.615 5.42 0.00 0.00 3.79
433 444 2.681976 GCTGAGTCATGTATGTGGGCTT 60.682 50.000 0.00 0.00 0.00 4.35
487 498 5.497474 GTGTTACATAAATGGACTGACCCT 58.503 41.667 0.00 0.00 38.00 4.34
493 504 3.945346 TGCGGTGTTACATAAATGGACT 58.055 40.909 0.00 0.00 0.00 3.85
548 559 7.921786 TGTGATACAAGATCTCGGAAAAATT 57.078 32.000 0.00 0.00 0.00 1.82
549 560 9.784531 ATATGTGATACAAGATCTCGGAAAAAT 57.215 29.630 0.00 0.00 0.00 1.82
609 620 8.801882 TTGGATCTAAGGGTGTATTAAAACTG 57.198 34.615 0.00 0.00 0.00 3.16
621 632 7.893302 TGTGTCAATTAATTTGGATCTAAGGGT 59.107 33.333 0.00 0.00 35.92 4.34
688 699 8.680903 CACTTCCTACAAGCTGAATTAATTGAT 58.319 33.333 5.17 0.00 0.00 2.57
702 713 5.408604 ACATAAAACGAGCACTTCCTACAAG 59.591 40.000 0.00 0.00 0.00 3.16
706 717 5.142061 TGACATAAAACGAGCACTTCCTA 57.858 39.130 0.00 0.00 0.00 2.94
754 765 7.095940 GCACCCTAATTTCTTCGGTTTTAAAAC 60.096 37.037 20.58 20.58 38.17 2.43
758 769 5.071370 TGCACCCTAATTTCTTCGGTTTTA 58.929 37.500 0.00 0.00 0.00 1.52
817 828 2.580470 GCGGATCGTGCACATCTCG 61.580 63.158 18.64 20.42 0.00 4.04
833 844 0.819582 ATTGGGAAGCAAATGAGGCG 59.180 50.000 0.00 0.00 36.08 5.52
835 846 7.147846 ACACTAAATATTGGGAAGCAAATGAGG 60.148 37.037 0.00 0.00 0.00 3.86
849 860 5.957842 ACACACACCCACACTAAATATTG 57.042 39.130 0.00 0.00 0.00 1.90
863 874 3.257393 TGCACAAATGAAAACACACACC 58.743 40.909 0.00 0.00 0.00 4.16
865 876 2.928757 GCTGCACAAATGAAAACACACA 59.071 40.909 0.00 0.00 0.00 3.72
866 877 2.284952 GGCTGCACAAATGAAAACACAC 59.715 45.455 0.50 0.00 0.00 3.82
867 878 2.093816 TGGCTGCACAAATGAAAACACA 60.094 40.909 0.50 0.00 0.00 3.72
868 879 2.284952 GTGGCTGCACAAATGAAAACAC 59.715 45.455 0.50 0.00 0.00 3.32
869 880 2.548875 GTGGCTGCACAAATGAAAACA 58.451 42.857 0.50 0.00 0.00 2.83
870 881 1.866601 GGTGGCTGCACAAATGAAAAC 59.133 47.619 0.50 0.00 0.00 2.43
886 897 4.780815 TCTGTTGGCTATCTAAATGGTGG 58.219 43.478 0.00 0.00 0.00 4.61
911 922 5.236282 GTCTGGTTTCTTAGACAGGGTTAC 58.764 45.833 0.00 0.00 42.18 2.50
912 923 4.285260 GGTCTGGTTTCTTAGACAGGGTTA 59.715 45.833 0.00 0.00 43.91 2.85
914 925 2.638363 GGTCTGGTTTCTTAGACAGGGT 59.362 50.000 0.00 0.00 43.91 4.34
915 926 2.907042 AGGTCTGGTTTCTTAGACAGGG 59.093 50.000 0.00 0.00 43.91 4.45
916 927 3.055747 GGAGGTCTGGTTTCTTAGACAGG 60.056 52.174 0.00 0.00 43.91 4.00
917 928 3.367498 CGGAGGTCTGGTTTCTTAGACAG 60.367 52.174 0.00 0.00 43.91 3.51
918 929 2.561419 CGGAGGTCTGGTTTCTTAGACA 59.439 50.000 0.00 0.00 43.91 3.41
919 930 2.674462 GCGGAGGTCTGGTTTCTTAGAC 60.674 54.545 0.00 0.00 41.95 2.59
920 931 1.549170 GCGGAGGTCTGGTTTCTTAGA 59.451 52.381 0.00 0.00 0.00 2.10
921 932 1.405661 GGCGGAGGTCTGGTTTCTTAG 60.406 57.143 0.00 0.00 0.00 2.18
922 933 0.611714 GGCGGAGGTCTGGTTTCTTA 59.388 55.000 0.00 0.00 0.00 2.10
923 934 1.375326 GGCGGAGGTCTGGTTTCTT 59.625 57.895 0.00 0.00 0.00 2.52
924 935 1.841556 TGGCGGAGGTCTGGTTTCT 60.842 57.895 0.00 0.00 0.00 2.52
925 936 1.671379 GTGGCGGAGGTCTGGTTTC 60.671 63.158 0.00 0.00 0.00 2.78
960 971 2.202623 CGGAAGGAAGAGGACGCG 60.203 66.667 3.53 3.53 0.00 6.01
974 985 0.747644 TTATAGCGTGTCCCGTCGGA 60.748 55.000 14.39 0.00 39.32 4.55
1035 1046 0.037303 AGGGAATGCCACACTGTCTG 59.963 55.000 0.00 0.00 35.15 3.51
1037 1048 0.326264 AGAGGGAATGCCACACTGTC 59.674 55.000 0.00 0.00 35.15 3.51
1077 1088 0.323360 TGGCTATGGCTGGTTGGTTC 60.323 55.000 0.00 0.00 38.73 3.62
1158 1169 1.758592 GTAGTTCTGGGTGGTGCCA 59.241 57.895 0.00 0.00 39.65 4.92
1159 1170 1.002502 GGTAGTTCTGGGTGGTGCC 60.003 63.158 0.00 0.00 0.00 5.01
1272 1283 3.787001 GCCTTCCCGTCCTGGAGG 61.787 72.222 9.41 9.41 42.00 4.30
1275 1286 3.646715 TTGGCCTTCCCGTCCTGG 61.647 66.667 3.32 0.00 35.87 4.45
1312 1323 2.230992 CACCCGGATTTGAGATTTGCAA 59.769 45.455 0.73 0.00 0.00 4.08
1315 1326 1.818060 TGCACCCGGATTTGAGATTTG 59.182 47.619 0.73 0.00 0.00 2.32
1328 1339 4.394920 ACACAGATTAATTAGTTGCACCCG 59.605 41.667 0.00 0.00 0.00 5.28
1352 1363 6.867662 ATGCAGAAGTTAATGTATACTGGC 57.132 37.500 4.17 0.00 0.00 4.85
1384 1397 2.359169 GCCCGTGAGATCCACCTGA 61.359 63.158 8.25 0.00 42.76 3.86
1396 1409 3.511595 TCGTAGTAGCCGCCCGTG 61.512 66.667 0.00 0.00 0.00 4.94
1665 1678 4.233635 AGCTACCGACTACGCGCG 62.234 66.667 30.96 30.96 38.29 6.86
1666 1679 2.651232 CAGCTACCGACTACGCGC 60.651 66.667 5.73 0.00 38.29 6.86
1667 1680 1.297451 GTCAGCTACCGACTACGCG 60.297 63.158 3.53 3.53 38.29 6.01
1668 1681 1.063811 GGTCAGCTACCGACTACGC 59.936 63.158 3.02 0.00 38.88 4.42
1683 1696 1.135489 TCGAGATGCGTACACTTGGTC 60.135 52.381 0.00 0.00 41.80 4.02
1699 1712 2.353889 CCTGCACAAGAATCCATTCGAG 59.646 50.000 0.00 0.00 41.56 4.04
1705 1718 0.251297 CCCACCTGCACAAGAATCCA 60.251 55.000 0.00 0.00 0.00 3.41
1712 1725 2.425592 CGTCTCCCACCTGCACAA 59.574 61.111 0.00 0.00 0.00 3.33
1735 1748 2.743718 CCAGCAGAAGTGGTCGGT 59.256 61.111 0.00 0.00 29.64 4.69
1899 1912 0.536006 GCTTGGAGTGTTGCAGGAGT 60.536 55.000 0.00 0.00 0.00 3.85
1928 1941 7.458397 TCATCTTGGATGGTTAGTTTACAACT 58.542 34.615 7.54 0.00 45.40 3.16
1932 1945 8.956426 TCATTTCATCTTGGATGGTTAGTTTAC 58.044 33.333 7.54 0.00 0.00 2.01
1948 1966 4.285517 ACCAGCTATCGGATCATTTCATCT 59.714 41.667 0.00 0.00 0.00 2.90
1950 1968 4.564406 GGACCAGCTATCGGATCATTTCAT 60.564 45.833 0.00 0.00 0.00 2.57
1962 1980 5.529060 CCAAGAAACATTAGGACCAGCTATC 59.471 44.000 0.00 0.00 0.00 2.08
1967 1985 3.690460 AGCCAAGAAACATTAGGACCAG 58.310 45.455 0.00 0.00 0.00 4.00
1970 1988 3.686016 TGGAGCCAAGAAACATTAGGAC 58.314 45.455 0.00 0.00 0.00 3.85
1975 1993 3.007182 CACCAATGGAGCCAAGAAACATT 59.993 43.478 6.16 0.00 32.43 2.71
1988 2006 1.951895 GCTGAGACATGCACCAATGGA 60.952 52.381 6.16 0.00 31.46 3.41
1998 2016 4.400845 CGAAATCAAACAGCTGAGACATG 58.599 43.478 23.35 11.19 0.00 3.21
2002 2020 1.806542 GGCGAAATCAAACAGCTGAGA 59.193 47.619 23.35 15.25 0.00 3.27
2016 2034 1.957186 CCGGAACTTGTCGGCGAAA 60.957 57.895 12.92 1.96 39.78 3.46
2030 2048 2.751436 CGTCGTACCTTCCCCGGA 60.751 66.667 0.73 0.00 0.00 5.14
2059 2077 3.805207 ACTGGTAATATTTCCTCGCCAC 58.195 45.455 11.88 0.00 0.00 5.01
2070 2088 3.296854 TCCGCTGACTGACTGGTAATAT 58.703 45.455 0.00 0.00 0.00 1.28
2104 2122 8.680001 CAAATGTTGAACATCCATCTTATCAGA 58.320 33.333 11.70 0.00 37.97 3.27
2105 2123 7.919091 CCAAATGTTGAACATCCATCTTATCAG 59.081 37.037 11.70 0.00 37.97 2.90
2107 2125 6.698766 GCCAAATGTTGAACATCCATCTTATC 59.301 38.462 11.70 0.00 37.97 1.75
2109 2127 5.479724 TGCCAAATGTTGAACATCCATCTTA 59.520 36.000 11.70 0.00 37.97 2.10
2111 2129 3.833650 TGCCAAATGTTGAACATCCATCT 59.166 39.130 11.70 0.00 37.97 2.90
2112 2130 4.191033 TGCCAAATGTTGAACATCCATC 57.809 40.909 11.70 2.93 37.97 3.51
2116 2150 3.524541 GGGATGCCAAATGTTGAACATC 58.475 45.455 11.70 0.00 37.97 3.06
2151 2185 1.418367 CGCACCACACGGATTAACG 59.582 57.895 0.00 0.00 40.31 3.18
2161 2195 1.525077 GTCCTGAAACCGCACCACA 60.525 57.895 0.00 0.00 0.00 4.17
2483 2517 0.478072 TGGAGGTTGTTCCACTGCAT 59.522 50.000 0.00 0.00 42.24 3.96
2484 2518 0.179020 CTGGAGGTTGTTCCACTGCA 60.179 55.000 0.00 0.00 42.24 4.41
2741 2775 2.019951 CGAACGACGGGTTGGACTG 61.020 63.158 0.00 0.00 39.50 3.51
2960 2995 3.562973 CCATCTGGAATTGACCGATCAAG 59.437 47.826 0.00 0.00 42.28 3.02
3132 3168 8.738645 AAAACTCTGTTACTGAACTGAATCTT 57.261 30.769 0.00 0.00 41.37 2.40
3170 3206 2.278857 CGTCTCTCGGATTGGGCG 60.279 66.667 0.00 0.00 35.71 6.13
3171 3207 1.227002 GTCGTCTCTCGGATTGGGC 60.227 63.158 0.00 0.00 40.32 5.36
3282 3318 4.148825 CGGCCCTTCTCCGTCCAG 62.149 72.222 0.00 0.00 41.85 3.86
3365 3401 2.184322 GCTTGTCGATGCCGAGGA 59.816 61.111 0.00 0.00 46.52 3.71
3377 3413 3.771160 CCGGGCCGTAGAGCTTGT 61.771 66.667 26.32 0.00 0.00 3.16
3379 3415 3.771160 CACCGGGCCGTAGAGCTT 61.771 66.667 26.32 0.00 0.00 3.74
3618 3654 1.070445 CGGCAGATGGAGGATGACC 59.930 63.158 0.00 0.00 0.00 4.02
3631 3667 7.464710 GCATAGCTTAGCTTATTATAACGGCAG 60.465 40.741 13.44 0.00 40.44 4.85
3714 3759 6.804783 GGTTTATACTTTGTAGCGCAACAAAT 59.195 34.615 11.47 0.00 45.58 2.32
3715 3760 6.144175 GGTTTATACTTTGTAGCGCAACAAA 58.856 36.000 11.47 12.43 44.81 2.83
3716 3761 5.238868 TGGTTTATACTTTGTAGCGCAACAA 59.761 36.000 11.47 0.00 36.72 2.83
3860 4220 7.116233 CAGCGAAATAAATACAAAGCTTTTGGT 59.884 33.333 9.53 8.19 0.00 3.67
3869 4229 6.371548 ACAGAGCTCAGCGAAATAAATACAAA 59.628 34.615 17.77 0.00 0.00 2.83
3876 4236 4.157840 TCAGTACAGAGCTCAGCGAAATAA 59.842 41.667 17.77 0.00 0.00 1.40
3887 4247 5.011533 ACTTCAGTTGATTCAGTACAGAGCT 59.988 40.000 0.00 0.00 0.00 4.09
3893 4253 6.367422 CAGAGGAACTTCAGTTGATTCAGTAC 59.633 42.308 0.00 0.00 41.55 2.73
3894 4254 6.459066 CAGAGGAACTTCAGTTGATTCAGTA 58.541 40.000 0.00 0.00 41.55 2.74
3895 4255 5.303971 CAGAGGAACTTCAGTTGATTCAGT 58.696 41.667 0.00 0.00 41.55 3.41
3896 4256 4.694509 CCAGAGGAACTTCAGTTGATTCAG 59.305 45.833 0.00 0.00 41.55 3.02
3937 4861 6.791775 CGTTTTCATTTTTAAAGGCATTCAGC 59.208 34.615 0.00 0.00 44.65 4.26
3938 4862 7.850501 ACGTTTTCATTTTTAAAGGCATTCAG 58.149 30.769 0.00 0.00 0.00 3.02
3950 4874 6.091577 GGAACACCAGAAACGTTTTCATTTTT 59.908 34.615 15.89 5.37 0.00 1.94
3960 4884 4.710324 TCTATTTGGAACACCAGAAACGT 58.290 39.130 0.00 0.00 39.29 3.99
3961 4885 5.682943 TTCTATTTGGAACACCAGAAACG 57.317 39.130 0.00 0.00 39.29 3.60
3966 4890 5.359860 GGGGTATTTCTATTTGGAACACCAG 59.640 44.000 8.15 0.00 39.29 4.00
3968 4892 5.265989 TGGGGTATTTCTATTTGGAACACC 58.734 41.667 0.00 0.00 39.29 4.16
3969 4893 5.359860 CCTGGGGTATTTCTATTTGGAACAC 59.640 44.000 0.00 0.00 39.29 3.32
3978 4902 9.421399 CACTTTAATTTCCTGGGGTATTTCTAT 57.579 33.333 0.00 0.00 0.00 1.98
3979 4903 8.616598 TCACTTTAATTTCCTGGGGTATTTCTA 58.383 33.333 0.00 0.00 0.00 2.10
3980 4904 7.475299 TCACTTTAATTTCCTGGGGTATTTCT 58.525 34.615 0.00 0.00 0.00 2.52
3981 4905 7.712204 TCACTTTAATTTCCTGGGGTATTTC 57.288 36.000 0.00 0.00 0.00 2.17
4054 4978 2.050144 ACTGTGACATTGAGGGACAGT 58.950 47.619 0.00 0.00 41.85 3.55
4097 5021 2.297033 GGCTTGTTGGATGTGTCATTGT 59.703 45.455 0.00 0.00 0.00 2.71
4098 5022 2.559668 AGGCTTGTTGGATGTGTCATTG 59.440 45.455 0.00 0.00 0.00 2.82
4099 5023 2.559668 CAGGCTTGTTGGATGTGTCATT 59.440 45.455 0.00 0.00 0.00 2.57
4100 5024 2.165167 CAGGCTTGTTGGATGTGTCAT 58.835 47.619 0.00 0.00 0.00 3.06
4101 5025 1.133823 ACAGGCTTGTTGGATGTGTCA 60.134 47.619 0.00 0.00 32.28 3.58
4102 5026 1.267806 CACAGGCTTGTTGGATGTGTC 59.732 52.381 0.00 0.00 37.17 3.67
4103 5027 1.321474 CACAGGCTTGTTGGATGTGT 58.679 50.000 0.00 0.00 37.17 3.72
4104 5028 0.038892 GCACAGGCTTGTTGGATGTG 60.039 55.000 0.00 0.00 43.18 3.21
4105 5029 0.467844 TGCACAGGCTTGTTGGATGT 60.468 50.000 0.00 0.00 41.91 3.06
4106 5030 0.675083 TTGCACAGGCTTGTTGGATG 59.325 50.000 0.00 0.00 41.91 3.51
4107 5031 1.412079 TTTGCACAGGCTTGTTGGAT 58.588 45.000 0.00 0.00 41.91 3.41
4108 5032 1.412079 ATTTGCACAGGCTTGTTGGA 58.588 45.000 0.00 0.00 41.91 3.53
4109 5033 2.137523 GAATTTGCACAGGCTTGTTGG 58.862 47.619 0.00 0.00 41.91 3.77
4110 5034 2.798283 CTGAATTTGCACAGGCTTGTTG 59.202 45.455 0.00 0.00 41.91 3.33
4111 5035 2.694628 TCTGAATTTGCACAGGCTTGTT 59.305 40.909 0.00 0.00 41.91 2.83
4258 5185 5.391416 GCCAGCTCAAGTAGATCTGTTTTTC 60.391 44.000 5.18 0.00 38.52 2.29
4264 5191 2.823984 CTGCCAGCTCAAGTAGATCTG 58.176 52.381 5.18 0.00 39.60 2.90
4390 5322 8.594550 ACTCATAAGTTACTCTTTAAGGCTTCA 58.405 33.333 1.30 0.00 37.56 3.02
4424 5356 7.138054 AGAAAGAAGGAAAGTGTCTTTAGGA 57.862 36.000 0.00 0.00 40.73 2.94
4433 5365 5.360999 ACAAGGGAAAGAAAGAAGGAAAGTG 59.639 40.000 0.00 0.00 0.00 3.16
4438 5370 3.636764 GCAACAAGGGAAAGAAAGAAGGA 59.363 43.478 0.00 0.00 0.00 3.36
4452 5384 2.327568 CGCTTATGGTTTGCAACAAGG 58.672 47.619 0.00 0.00 0.00 3.61
4472 5404 1.132834 TGATCACATTCGCCACAATGC 59.867 47.619 0.00 0.00 37.28 3.56
4473 5405 3.065648 TCATGATCACATTCGCCACAATG 59.934 43.478 0.00 0.00 39.35 2.82
4474 5406 3.281158 TCATGATCACATTCGCCACAAT 58.719 40.909 0.00 0.00 34.15 2.71
4475 5407 2.679336 CTCATGATCACATTCGCCACAA 59.321 45.455 0.00 0.00 34.15 3.33
4476 5408 2.282407 CTCATGATCACATTCGCCACA 58.718 47.619 0.00 0.00 34.15 4.17
4478 5410 1.302366 GCTCATGATCACATTCGCCA 58.698 50.000 0.00 0.00 34.15 5.69
4480 5412 1.003116 GGTGCTCATGATCACATTCGC 60.003 52.381 26.21 11.39 34.15 4.70
4481 5413 1.600957 GGGTGCTCATGATCACATTCG 59.399 52.381 26.21 1.33 34.15 3.34
4499 5438 0.184451 ATCAAGGGCATACTGCTGGG 59.816 55.000 0.00 0.00 44.28 4.45
4501 5440 1.315690 CCATCAAGGGCATACTGCTG 58.684 55.000 0.00 0.00 44.28 4.41
4502 5441 0.921896 ACCATCAAGGGCATACTGCT 59.078 50.000 0.00 0.00 44.28 4.24
4514 5453 5.940192 CACTTGCTAGTGTTTACCATCAA 57.060 39.130 18.65 0.00 45.46 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.