AutoCloner

Multiple sequence alignment - TraesCS3D01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G153300	chr3D	100.000	2675	0	0	1	2675	120143135	120145809	0.000000e+00	4940
1	TraesCS3D01G153300	chr3D	89.422	1541	130	25	520	2040	120132750	120134277	0.000000e+00	1912
2	TraesCS3D01G153300	chr3B	92.593	2052	127	20	1	2038	172093003	172095043	0.000000e+00	2924
3	TraesCS3D01G153300	chr3B	92.679	2049	117	21	1	2038	172212461	172214487	0.000000e+00	2922
4	TraesCS3D01G153300	chr3B	93.622	1960	103	12	1	1941	146981810	146979854	0.000000e+00	2907
5	TraesCS3D01G153300	chr3B	92.739	1942	132	7	1	1941	172171166	172173099	0.000000e+00	2796
6	TraesCS3D01G153300	chr3B	92.636	1942	135	6	1	1941	172052806	172054740	0.000000e+00	2787
7	TraesCS3D01G153300	chr3B	87.113	194	24	1	2441	2633	172106019	172106212	4.480000e-53	219
8	TraesCS3D01G153300	chr3B	86.082	194	26	1	2441	2633	172225490	172225683	9.710000e-50	207
9	TraesCS3D01G153300	chr3B	89.773	88	8	1	1953	2040	172054725	172054811	7.830000e-21	111
10	TraesCS3D01G153300	chr3B	89.773	88	8	1	1953	2040	172173084	172173170	7.830000e-21	111
11	TraesCS3D01G153300	chr1D	93.252	1882	116	6	1	1873	465902484	465900605	0.000000e+00	2761
12	TraesCS3D01G153300	chr1B	92.355	1949	135	10	1	1936	456713603	456711656	0.000000e+00	2761
13	TraesCS3D01G153300	chr1B	93.839	1834	109	2	1	1830	642700823	642698990	0.000000e+00	2758
14	TraesCS3D01G153300	chr6D	91.650	2012	140	24	1	1998	452127347	452125350	0.000000e+00	2760
15	TraesCS3D01G153300	chr6D	86.234	385	40	4	2299	2673	452124942	452124561	3.210000e-109	405
16	TraesCS3D01G153300	chr5B	90.431	2017	138	21	1	2001	507802377	507800400	0.000000e+00	2604
17	TraesCS3D01G153300	chr5B	87.725	334	33	5	2347	2675	507798000	507797670	1.500000e-102	383
18	TraesCS3D01G153300	chr3A	90.506	158	14	1	2509	2665	127074532	127074689	9.710000e-50	207

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G153300	chr3D	120143135	120145809	2674	False	4940.0	4940	100.0000	1	2675	1	chr3D.!!$F2	2674
1	TraesCS3D01G153300	chr3D	120132750	120134277	1527	False	1912.0	1912	89.4220	520	2040	1	chr3D.!!$F1	1520
2	TraesCS3D01G153300	chr3B	172093003	172095043	2040	False	2924.0	2924	92.5930	1	2038	1	chr3B.!!$F1	2037
3	TraesCS3D01G153300	chr3B	172212461	172214487	2026	False	2922.0	2922	92.6790	1	2038	1	chr3B.!!$F3	2037
4	TraesCS3D01G153300	chr3B	146979854	146981810	1956	True	2907.0	2907	93.6220	1	1941	1	chr3B.!!$R1	1940
5	TraesCS3D01G153300	chr3B	172171166	172173170	2004	False	1453.5	2796	91.2560	1	2040	2	chr3B.!!$F6	2039
6	TraesCS3D01G153300	chr3B	172052806	172054811	2005	False	1449.0	2787	91.2045	1	2040	2	chr3B.!!$F5	2039
7	TraesCS3D01G153300	chr1D	465900605	465902484	1879	True	2761.0	2761	93.2520	1	1873	1	chr1D.!!$R1	1872
8	TraesCS3D01G153300	chr1B	456711656	456713603	1947	True	2761.0	2761	92.3550	1	1936	1	chr1B.!!$R1	1935
9	TraesCS3D01G153300	chr1B	642698990	642700823	1833	True	2758.0	2758	93.8390	1	1830	1	chr1B.!!$R2	1829
10	TraesCS3D01G153300	chr6D	452124561	452127347	2786	True	1582.5	2760	88.9420	1	2673	2	chr6D.!!$R1	2672
11	TraesCS3D01G153300	chr5B	507797670	507802377	4707	True	1493.5	2604	89.0780	1	2675	2	chr5B.!!$R1	2674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
828	833	1.153369	CGTCATCGAGGTGCCCAAT	60.153	57.895	0.0	0.0	39.71	3.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2054	4026	0.617249	AGGAGCAGAGAGGGGTTGAG	60.617	60.0	0.0	0.0	0.0	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
148	149	2.446036	ATCCACCTCTACGGCCCC	60.446	66.667	0.00	0.00	35.61	5.80
196	197	4.681978	GCGGTGGCCAACGAGACT	62.682	66.667	45.74	0.00	45.97	3.24
238	242	1.794714	ACGGCCCAGAGATAATGTCT	58.205	50.000	0.00	0.00	40.81	3.41
412	416	2.202797	CTGACGCTGATGGACGGG	60.203	66.667	0.00	0.00	0.00	5.28
828	833	1.153369	CGTCATCGAGGTGCCCAAT	60.153	57.895	0.00	0.00	39.71	3.16
919	924	1.623311	TCGAGCACCCAGAGAAATTCA	59.377	47.619	0.00	0.00	0.00	2.57
970	975	1.550130	CCTCTTCTACGGGCCACCAA	61.550	60.000	4.39	0.00	36.13	3.67
989	994	1.636148	AGGTGCGGTAAGACCTTGTA	58.364	50.000	0.00	0.00	39.75	2.41
1231	1236	0.889306	GAACCAGCTACTCACCGAGT	59.111	55.000	1.75	1.75	45.54	4.18
1590	1598	3.803162	GGGCAGGAAGAGGAGGCC	61.803	72.222	0.00	0.00	43.86	5.19
1591	1599	3.011517	GGCAGGAAGAGGAGGCCA	61.012	66.667	5.01	0.00	44.01	5.36
1672	1680	0.456221	CGCCGACATCAGGAAGTACT	59.544	55.000	0.00	0.00	0.00	2.73
1800	1808	4.797471	CTGATGAGGATGAAGACGATCTC	58.203	47.826	0.00	0.00	0.00	2.75
1831	1839	7.390718	AGTGATCCAGTAACCATTGTTAGAAAC	59.609	37.037	0.00	0.00	37.62	2.78
1839	1853	6.391227	AACCATTGTTAGAAACTGAAGTGG	57.609	37.500	0.00	0.00	31.36	4.00
1904	1981	8.934023	ATTCGTCCCATGTATATAATTTTGGT	57.066	30.769	0.00	0.00	0.00	3.67
1992	2075	7.483307	TGATGAAATAATAAGCTCCTTGTTGC	58.517	34.615	0.00	0.00	0.00	4.17
2007	2090	5.241949	TCCTTGTTGCGCTTTCCTTTTATTA	59.758	36.000	9.73	0.00	0.00	0.98
2031	2176	3.872511	AGCAGTGATGAGACTCTGAAG	57.127	47.619	3.68	0.00	34.58	3.02
2033	2178	3.831333	AGCAGTGATGAGACTCTGAAGAA	59.169	43.478	3.68	0.00	34.58	2.52
2040	2185	4.998671	TGAGACTCTGAAGAATAGCCTG	57.001	45.455	3.68	0.00	0.00	4.85
2041	2186	3.131933	TGAGACTCTGAAGAATAGCCTGC	59.868	47.826	3.68	0.00	0.00	4.85
2042	2187	3.102972	AGACTCTGAAGAATAGCCTGCA	58.897	45.455	0.00	0.00	0.00	4.41
2043	2188	3.132646	AGACTCTGAAGAATAGCCTGCAG	59.867	47.826	6.78	6.78	40.48	4.41
2045	2190	2.170187	CTCTGAAGAATAGCCTGCAGGT	59.830	50.000	32.81	21.44	39.73	4.00
2046	2191	2.573462	TCTGAAGAATAGCCTGCAGGTT	59.427	45.455	32.81	29.58	39.73	3.50
2047	2192	3.009473	TCTGAAGAATAGCCTGCAGGTTT	59.991	43.478	32.81	23.00	39.73	3.27
2054	4026	1.902938	AGCCTGCAGGTTTTTCTCTC	58.097	50.000	32.81	13.48	37.57	3.20
2055	4027	1.423161	AGCCTGCAGGTTTTTCTCTCT	59.577	47.619	32.81	15.59	37.57	3.10
2078	4050	2.583520	CCTCTCTGCTCCTGCACC	59.416	66.667	0.00	0.00	45.31	5.01
2086	4058	3.150949	CTCCTGCACCAGACCACA	58.849	61.111	0.00	0.00	32.44	4.17
2088	4060	1.459348	TCCTGCACCAGACCACAGA	60.459	57.895	0.00	0.00	32.44	3.41
2092	4064	2.023673	CTGCACCAGACCACAGAAAAA	58.976	47.619	0.00	0.00	32.44	1.94
2117	4221	3.237268	AGGTTGCCTGTTTAATGTCCA	57.763	42.857	0.00	0.00	29.57	4.02
2128	4232	7.542130	GCCTGTTTAATGTCCAGTTAATTTCTG	59.458	37.037	4.12	4.12	0.00	3.02
2130	4234	9.612620	CTGTTTAATGTCCAGTTAATTTCTGAC	57.387	33.333	10.57	8.09	35.20	3.51
2145	4249	6.793492	ATTTCTGACTGAACTTGTAAGAGC	57.207	37.500	0.00	0.00	33.88	4.09
2146	4250	4.937201	TCTGACTGAACTTGTAAGAGCA	57.063	40.909	0.00	0.00	0.00	4.26
2147	4251	4.876125	TCTGACTGAACTTGTAAGAGCAG	58.124	43.478	13.03	13.03	37.04	4.24
2148	4252	4.584743	TCTGACTGAACTTGTAAGAGCAGA	59.415	41.667	18.10	0.00	35.90	4.26
2149	4253	5.069119	TCTGACTGAACTTGTAAGAGCAGAA	59.931	40.000	18.10	9.68	35.90	3.02
2150	4254	5.670485	TGACTGAACTTGTAAGAGCAGAAA	58.330	37.500	18.10	8.39	35.90	2.52
2170	4275	4.701956	AACACCTGTTGTCTGAAACTTG	57.298	40.909	0.00	0.00	37.51	3.16
2177	4282	1.967319	TGTCTGAAACTTGTGGCTCC	58.033	50.000	0.00	0.00	0.00	4.70
2198	4303	3.070018	CCAACAGTCTTAGTTGCAGAGG	58.930	50.000	0.00	0.00	43.74	3.69
2220	4325	2.989166	GTTCTTTGCTAGCCAACAATGC	59.011	45.455	13.29	0.00	31.97	3.56
2223	4328	0.889994	TTGCTAGCCAACAATGCTGG	59.110	50.000	13.29	0.00	39.91	4.85
2224	4329	0.966875	TGCTAGCCAACAATGCTGGG	60.967	55.000	13.29	0.00	39.91	4.45
2225	4330	1.811860	CTAGCCAACAATGCTGGGC	59.188	57.895	4.71	3.63	46.77	5.36
2235	4340	2.273123	TGCTGGGCATACTGCTGG	59.727	61.111	0.00	0.00	44.28	4.85
2236	4341	2.517875	GCTGGGCATACTGCTGGG	60.518	66.667	0.00	0.00	44.28	4.45
2237	4342	3.001514	CTGGGCATACTGCTGGGT	58.998	61.111	0.00	0.00	44.28	4.51
2238	4343	1.452651	CTGGGCATACTGCTGGGTG	60.453	63.158	0.00	0.00	44.28	4.61
2239	4344	2.830370	GGGCATACTGCTGGGTGC	60.830	66.667	12.06	12.06	44.28	5.01
2241	4346	1.821332	GGCATACTGCTGGGTGCTC	60.821	63.158	17.39	8.08	44.28	4.26
2242	4347	1.078214	GCATACTGCTGGGTGCTCA	60.078	57.895	12.87	0.00	40.96	4.26
2243	4348	0.465097	GCATACTGCTGGGTGCTCAT	60.465	55.000	12.87	0.00	40.96	2.90
2244	4349	1.306148	CATACTGCTGGGTGCTCATG	58.694	55.000	0.00	0.00	43.37	3.07
2246	4351	0.250234	TACTGCTGGGTGCTCATGAC	59.750	55.000	0.00	0.00	43.37	3.06
2247	4352	1.748122	CTGCTGGGTGCTCATGACC	60.748	63.158	0.00	0.00	43.37	4.02
2248	4353	2.352422	GCTGGGTGCTCATGACCA	59.648	61.111	4.59	3.80	38.95	4.02
2249	4354	2.042831	GCTGGGTGCTCATGACCAC	61.043	63.158	12.00	12.00	38.95	4.16
2250	4355	1.376086	CTGGGTGCTCATGACCACA	59.624	57.895	20.10	5.47	34.89	4.17
2251	4356	0.034767	CTGGGTGCTCATGACCACAT	60.035	55.000	20.10	0.00	34.89	3.21
2252	4357	0.405198	TGGGTGCTCATGACCACATT	59.595	50.000	20.10	0.00	34.89	2.71
2253	4358	0.813184	GGGTGCTCATGACCACATTG	59.187	55.000	20.10	0.00	34.89	2.82
2275	4435	1.603739	GTGAGTTCAGGTTGGGGGC	60.604	63.158	0.00	0.00	0.00	5.80
2309	4502	0.921896	ACCATCAAGGGCATACTGCT	59.078	50.000	0.00	0.00	44.28	4.24
2310	4503	1.315690	CCATCAAGGGCATACTGCTG	58.684	55.000	0.00	0.00	44.28	4.41
2312	4505	0.184451	ATCAAGGGCATACTGCTGGG	59.816	55.000	0.00	0.00	44.28	4.45
2330	4523	1.600957	GGGTGCTCATGATCACATTCG	59.399	52.381	26.21	1.33	34.15	3.34
2332	4525	1.003116	GTGCTCATGATCACATTCGCC	60.003	52.381	21.73	0.00	34.15	5.54
2333	4526	1.302366	GCTCATGATCACATTCGCCA	58.698	50.000	0.00	0.00	34.15	5.69
2334	4527	1.003116	GCTCATGATCACATTCGCCAC	60.003	52.381	0.00	0.00	34.15	5.01
2359	4559	2.327568	CGCTTATGGTTTGCAACAAGG	58.672	47.619	0.00	0.00	0.00	3.61
2373	4573	3.636764	GCAACAAGGGAAAGAAAGAAGGA	59.363	43.478	0.00	0.00	0.00	3.36
2378	4578	5.360999	ACAAGGGAAAGAAAGAAGGAAAGTG	59.639	40.000	0.00	0.00	0.00	3.16
2387	4587	7.138054	AGAAAGAAGGAAAGTGTCTTTAGGA	57.862	36.000	0.00	0.00	40.73	2.94
2421	4621	8.594550	ACTCATAAGTTACTCTTTAAGGCTTCA	58.405	33.333	1.30	0.00	37.56	3.02
2547	4751	2.823984	CTGCCAGCTCAAGTAGATCTG	58.176	52.381	5.18	0.00	39.60	2.90
2553	4757	5.391416	GCCAGCTCAAGTAGATCTGTTTTTC	60.391	44.000	5.18	0.00	38.52	2.29

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
196	197	2.053747	TAAGGAAGAAGAAGGCCCCA	57.946	50.000	0.00	0.00	0.00	4.96
238	242	1.456196	CGCTCTCTCCGGCCATCTTA	61.456	60.000	2.24	0.00	0.00	2.10
828	833	1.007734	GACGTCGTTCCAGCTGACA	60.008	57.895	17.39	0.00	32.91	3.58
919	924	2.162716	GCGACATGCCGAACTTCTT	58.837	52.632	5.30	0.00	37.76	2.52
970	975	1.549170	CTACAAGGTCTTACCGCACCT	59.451	52.381	0.00	0.00	44.90	4.00
1231	1236	3.053291	GGCGTTCATGCCGTCCAA	61.053	61.111	0.00	0.00	46.75	3.53
1590	1598	0.876342	GAGCCGCCTTAATCTCCGTG	60.876	60.000	0.00	0.00	0.00	4.94
1591	1599	1.327690	TGAGCCGCCTTAATCTCCGT	61.328	55.000	0.00	0.00	0.00	4.69
1672	1680	4.492160	CGTCTGCGCGAAGGCCTA	62.492	66.667	14.36	0.00	35.02	3.93
1753	1761	2.872388	CGGAGGTGTGGACAGCAGT	61.872	63.158	11.32	0.00	46.03	4.40
1800	1808	6.173339	ACAATGGTTACTGGATCACTTGTAG	58.827	40.000	0.00	0.00	0.00	2.74
1831	1839	8.584157	AGAGTCTATAATATTCTGCCACTTCAG	58.416	37.037	0.00	0.00	35.46	3.02
1864	1885	5.943416	TGGGACGAATCAACATAAACAGAAT	59.057	36.000	0.00	0.00	0.00	2.40
1873	1915	9.739276	AATTATATACATGGGACGAATCAACAT	57.261	29.630	0.00	0.00	0.00	2.71
1992	2075	6.961554	CACTGCTTACTAATAAAAGGAAAGCG	59.038	38.462	0.00	0.00	40.07	4.68
2007	2090	4.339748	TCAGAGTCTCATCACTGCTTACT	58.660	43.478	1.94	0.00	0.00	2.24
2031	2176	4.013050	AGAGAAAAACCTGCAGGCTATTC	58.987	43.478	33.06	28.71	39.32	1.75
2033	2178	3.265479	AGAGAGAAAAACCTGCAGGCTAT	59.735	43.478	33.06	17.97	39.32	2.97
2040	2185	2.554462	GGGTTGAGAGAGAAAAACCTGC	59.446	50.000	3.66	0.00	41.51	4.85
2041	2186	3.149981	GGGGTTGAGAGAGAAAAACCTG	58.850	50.000	3.66	0.00	41.51	4.00
2042	2187	3.056832	AGGGGTTGAGAGAGAAAAACCT	58.943	45.455	3.66	0.00	41.51	3.50
2043	2188	3.073209	AGAGGGGTTGAGAGAGAAAAACC	59.927	47.826	0.00	0.00	41.14	3.27
2045	2190	4.040952	CAGAGAGGGGTTGAGAGAGAAAAA	59.959	45.833	0.00	0.00	0.00	1.94
2046	2191	3.580458	CAGAGAGGGGTTGAGAGAGAAAA	59.420	47.826	0.00	0.00	0.00	2.29
2047	2192	3.169099	CAGAGAGGGGTTGAGAGAGAAA	58.831	50.000	0.00	0.00	0.00	2.52
2054	4026	0.617249	AGGAGCAGAGAGGGGTTGAG	60.617	60.000	0.00	0.00	0.00	3.02
2055	4027	0.906756	CAGGAGCAGAGAGGGGTTGA	60.907	60.000	0.00	0.00	0.00	3.18
2100	4072	6.909550	ATTAACTGGACATTAAACAGGCAA	57.090	33.333	0.00	0.00	36.57	4.52
2101	4073	6.909550	AATTAACTGGACATTAAACAGGCA	57.090	33.333	0.00	0.00	36.57	4.75
2102	4074	7.542130	CAGAAATTAACTGGACATTAAACAGGC	59.458	37.037	0.00	0.00	36.57	4.85
2103	4075	8.792633	TCAGAAATTAACTGGACATTAAACAGG	58.207	33.333	11.06	0.00	36.57	4.00
2104	4076	9.612620	GTCAGAAATTAACTGGACATTAAACAG	57.387	33.333	11.06	0.00	38.19	3.16
2106	4078	9.612620	CAGTCAGAAATTAACTGGACATTAAAC	57.387	33.333	11.06	2.52	37.38	2.01
2107	4079	9.567776	TCAGTCAGAAATTAACTGGACATTAAA	57.432	29.630	11.06	0.00	40.60	1.52
2108	4080	9.567776	TTCAGTCAGAAATTAACTGGACATTAA	57.432	29.630	11.06	0.00	40.60	1.40
2109	4081	8.999431	GTTCAGTCAGAAATTAACTGGACATTA	58.001	33.333	8.02	0.00	45.14	1.90
2110	4082	7.875971	GTTCAGTCAGAAATTAACTGGACATT	58.124	34.615	8.02	0.00	45.14	2.71
2111	4083	7.440523	GTTCAGTCAGAAATTAACTGGACAT	57.559	36.000	8.02	0.00	45.14	3.06
2112	4084	6.861065	GTTCAGTCAGAAATTAACTGGACA	57.139	37.500	8.02	0.00	45.14	4.02
2113	4085	7.012421	ACAAGTTCAGTCAGAAATTAACTGGAC	59.988	37.037	5.24	5.24	45.83	4.02
2117	4221	9.832445	TCTTACAAGTTCAGTCAGAAATTAACT	57.168	29.630	0.00	0.00	42.13	2.24
2128	4232	5.523916	TGTTTCTGCTCTTACAAGTTCAGTC	59.476	40.000	10.58	6.28	32.53	3.51
2130	4234	5.277538	GGTGTTTCTGCTCTTACAAGTTCAG	60.278	44.000	0.00	6.80	0.00	3.02
2145	4249	4.396166	AGTTTCAGACAACAGGTGTTTCTG	59.604	41.667	18.85	18.85	41.96	3.02
2146	4250	4.589908	AGTTTCAGACAACAGGTGTTTCT	58.410	39.130	0.00	0.00	41.96	2.52
2147	4251	4.965119	AGTTTCAGACAACAGGTGTTTC	57.035	40.909	0.00	0.00	41.96	2.78
2148	4252	4.522789	ACAAGTTTCAGACAACAGGTGTTT	59.477	37.500	0.00	0.00	41.96	2.83
2149	4253	4.079253	ACAAGTTTCAGACAACAGGTGTT	58.921	39.130	0.00	0.00	41.96	3.32
2150	4254	3.440173	CACAAGTTTCAGACAACAGGTGT	59.560	43.478	0.00	0.00	45.74	4.16
2170	4275	1.348036	ACTAAGACTGTTGGGAGCCAC	59.652	52.381	0.00	0.00	30.78	5.01
2177	4282	3.070018	CCTCTGCAACTAAGACTGTTGG	58.930	50.000	7.54	0.00	43.37	3.77
2198	4303	3.578688	CATTGTTGGCTAGCAAAGAACC	58.421	45.455	16.13	0.00	30.64	3.62
2207	4312	0.966875	TGCCCAGCATTGTTGGCTAG	60.967	55.000	13.65	2.40	44.32	3.42
2231	4336	2.352422	TGGTCATGAGCACCCAGC	59.648	61.111	23.20	0.00	46.19	4.85
2248	4353	3.297134	ACCTGAACTCACAACCAATGT	57.703	42.857	0.00	0.00	45.34	2.71
2249	4354	3.243501	CCAACCTGAACTCACAACCAATG	60.244	47.826	0.00	0.00	0.00	2.82
2250	4355	2.958355	CCAACCTGAACTCACAACCAAT	59.042	45.455	0.00	0.00	0.00	3.16
2251	4356	2.374184	CCAACCTGAACTCACAACCAA	58.626	47.619	0.00	0.00	0.00	3.67
2252	4357	1.409521	CCCAACCTGAACTCACAACCA	60.410	52.381	0.00	0.00	0.00	3.67
2253	4358	1.318576	CCCAACCTGAACTCACAACC	58.681	55.000	0.00	0.00	0.00	3.77
2265	4425	2.142292	CTAGCAAGTGCCCCCAACCT	62.142	60.000	0.00	0.00	43.38	3.50
2309	4502	2.646930	GAATGTGATCATGAGCACCCA	58.353	47.619	34.30	21.34	46.28	4.51
2310	4503	1.600957	CGAATGTGATCATGAGCACCC	59.399	52.381	34.30	23.51	46.28	4.61
2312	4505	1.003116	GGCGAATGTGATCATGAGCAC	60.003	52.381	32.01	32.01	46.94	4.40
2330	4523	4.715983	CCATAAGCGCATTGTGGC	57.284	55.556	11.47	0.00	42.46	5.01
2332	4525	1.655099	GCAAACCATAAGCGCATTGTG	59.345	47.619	11.47	9.58	0.00	3.33
2333	4526	1.271934	TGCAAACCATAAGCGCATTGT	59.728	42.857	11.47	0.00	0.00	2.71
2334	4527	1.993542	TGCAAACCATAAGCGCATTG	58.006	45.000	11.47	3.42	0.00	2.82
2359	4559	6.701145	AAGACACTTTCCTTCTTTCTTTCC	57.299	37.500	0.00	0.00	0.00	3.13
2481	4685	1.475280	CAGGAATGACAGTGGCCAATG	59.525	52.381	30.60	30.60	0.00	2.82
2483	4687	0.895100	GCAGGAATGACAGTGGCCAA	60.895	55.000	7.24	0.00	0.00	4.52
2547	4751	1.335496	TGTGGGTTAGCAGCGAAAAAC	59.665	47.619	0.00	0.00	0.00	2.43
2553	4757	2.309528	TCTATTGTGGGTTAGCAGCG	57.690	50.000	0.00	0.00	0.00	5.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.