Multiple sequence alignment - TraesCS3D01G153000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G153000 chr3D 100.000 4870 0 0 1 4870 119412189 119407320 0.000000e+00 8994.0
1 TraesCS3D01G153000 chr3D 82.986 1534 148 45 560 2036 119424852 119423375 0.000000e+00 1282.0
2 TraesCS3D01G153000 chr3D 85.324 695 74 11 3511 4188 119418808 119418125 0.000000e+00 693.0
3 TraesCS3D01G153000 chr3D 94.410 161 9 0 57 217 598201555 598201715 1.050000e-61 248.0
4 TraesCS3D01G153000 chr3D 92.920 113 7 1 2052 2163 119423390 119423278 3.900000e-36 163.0
5 TraesCS3D01G153000 chr3B 88.757 3629 242 75 644 4183 171799857 171796306 0.000000e+00 4289.0
6 TraesCS3D01G153000 chr3B 82.898 1456 157 39 641 2049 171814485 171813075 0.000000e+00 1225.0
7 TraesCS3D01G153000 chr3B 84.561 706 79 17 3504 4188 171808811 171808115 0.000000e+00 673.0
8 TraesCS3D01G153000 chr3B 89.597 471 26 11 4183 4653 171726761 171726314 1.180000e-160 577.0
9 TraesCS3D01G153000 chr3B 93.827 162 10 0 55 216 762999210 762999049 1.350000e-60 244.0
10 TraesCS3D01G153000 chr3B 93.421 152 10 0 4719 4870 171718275 171718124 4.900000e-55 226.0
11 TraesCS3D01G153000 chr3B 97.500 40 1 0 481 520 171800338 171800299 8.750000e-08 69.4
12 TraesCS3D01G153000 chr3A 90.915 1552 72 25 540 2036 126123609 126122072 0.000000e+00 2021.0
13 TraesCS3D01G153000 chr3A 92.805 1362 47 11 2054 3396 126122085 126120756 0.000000e+00 1925.0
14 TraesCS3D01G153000 chr3A 89.724 1343 91 23 3423 4759 126120339 126119038 0.000000e+00 1672.0
15 TraesCS3D01G153000 chr3A 81.154 1300 139 45 560 1815 126164290 126163053 0.000000e+00 946.0
16 TraesCS3D01G153000 chr3A 84.438 694 75 16 3511 4184 126157971 126157291 0.000000e+00 652.0
17 TraesCS3D01G153000 chr3A 85.271 387 48 6 3422 3803 120179130 120178748 1.640000e-104 390.0
18 TraesCS3D01G153000 chr3A 84.810 316 35 6 217 519 126123912 126123597 6.120000e-79 305.0
19 TraesCS3D01G153000 chr3A 83.333 234 22 12 1814 2036 126162986 126162759 2.970000e-47 200.0
20 TraesCS3D01G153000 chr3A 93.750 112 7 0 2052 2163 126162774 126162663 8.380000e-38 169.0
21 TraesCS3D01G153000 chr3A 88.043 92 11 0 4751 4842 126111422 126111331 5.150000e-20 110.0
22 TraesCS3D01G153000 chr5D 97.333 150 4 0 57 206 91330826 91330677 6.260000e-64 255.0
23 TraesCS3D01G153000 chr5D 94.410 161 9 0 57 217 439787265 439787425 1.050000e-61 248.0
24 TraesCS3D01G153000 chr5D 93.789 161 9 1 57 217 371220393 371220552 1.750000e-59 241.0
25 TraesCS3D01G153000 chr6D 94.545 165 8 1 53 217 132663799 132663962 2.250000e-63 254.0
26 TraesCS3D01G153000 chr1B 95.455 154 7 0 53 206 32368099 32368252 3.760000e-61 246.0
27 TraesCS3D01G153000 chr1B 91.329 173 13 2 45 217 565932746 565932916 8.150000e-58 235.0
28 TraesCS3D01G153000 chr5A 92.727 165 11 1 52 216 255491921 255492084 2.270000e-58 237.0
29 TraesCS3D01G153000 chr6A 81.667 120 12 8 4204 4322 582803136 582803026 1.870000e-14 91.6
30 TraesCS3D01G153000 chr2A 78.261 138 15 10 4204 4332 69342367 69342236 1.880000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G153000 chr3D 119407320 119412189 4869 True 8994.000000 8994 100.0000 1 4870 1 chr3D.!!$R1 4869
1 TraesCS3D01G153000 chr3D 119423278 119424852 1574 True 722.500000 1282 87.9530 560 2163 2 chr3D.!!$R3 1603
2 TraesCS3D01G153000 chr3D 119418125 119418808 683 True 693.000000 693 85.3240 3511 4188 1 chr3D.!!$R2 677
3 TraesCS3D01G153000 chr3B 171796306 171800338 4032 True 2179.200000 4289 93.1285 481 4183 2 chr3B.!!$R6 3702
4 TraesCS3D01G153000 chr3B 171813075 171814485 1410 True 1225.000000 1225 82.8980 641 2049 1 chr3B.!!$R4 1408
5 TraesCS3D01G153000 chr3B 171808115 171808811 696 True 673.000000 673 84.5610 3504 4188 1 chr3B.!!$R3 684
6 TraesCS3D01G153000 chr3A 126119038 126123912 4874 True 1480.750000 2021 89.5635 217 4759 4 chr3A.!!$R4 4542
7 TraesCS3D01G153000 chr3A 126157291 126157971 680 True 652.000000 652 84.4380 3511 4184 1 chr3A.!!$R3 673
8 TraesCS3D01G153000 chr3A 126162663 126164290 1627 True 438.333333 946 86.0790 560 2163 3 chr3A.!!$R5 1603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 412 0.034337 TGTCGGTCCAACACCTAAGC 59.966 55.0 0.0 0.0 44.21 3.09 F
2026 2575 0.108424 AGCTCGCAGATCCACACTTC 60.108 55.0 0.0 0.0 33.89 3.01 F
2027 2576 0.108424 GCTCGCAGATCCACACTTCT 60.108 55.0 0.0 0.0 33.89 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2958 0.040646 TCATCCACCACTCTACCGGT 59.959 55.0 13.98 13.98 35.27 5.28 R
3712 4731 0.679002 CTTGTCCCACTGCCTGATGG 60.679 60.0 0.00 0.00 35.59 3.51 R
3958 4984 0.811281 GAAACTCCCCTTGGCAATCG 59.189 55.0 0.00 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.944129 TCAGTGGGGAACAGGAAAAAG 58.056 47.619 0.00 0.00 0.00 2.27
21 22 1.963515 CAGTGGGGAACAGGAAAAAGG 59.036 52.381 0.00 0.00 0.00 3.11
22 23 1.856920 AGTGGGGAACAGGAAAAAGGA 59.143 47.619 0.00 0.00 0.00 3.36
23 24 1.961394 GTGGGGAACAGGAAAAAGGAC 59.039 52.381 0.00 0.00 0.00 3.85
24 25 1.856920 TGGGGAACAGGAAAAAGGACT 59.143 47.619 0.00 0.00 0.00 3.85
25 26 2.239400 GGGGAACAGGAAAAAGGACTG 58.761 52.381 0.00 0.00 38.19 3.51
26 27 2.239400 GGGAACAGGAAAAAGGACTGG 58.761 52.381 0.00 0.00 36.57 4.00
27 28 2.158519 GGGAACAGGAAAAAGGACTGGA 60.159 50.000 0.00 0.00 36.57 3.86
28 29 3.500471 GGGAACAGGAAAAAGGACTGGAT 60.500 47.826 0.00 0.00 36.57 3.41
29 30 3.759086 GGAACAGGAAAAAGGACTGGATC 59.241 47.826 0.00 0.00 36.57 3.36
30 31 3.059352 ACAGGAAAAAGGACTGGATCG 57.941 47.619 0.00 0.00 36.57 3.69
31 32 2.290323 ACAGGAAAAAGGACTGGATCGG 60.290 50.000 0.00 0.00 36.57 4.18
32 33 1.282157 AGGAAAAAGGACTGGATCGGG 59.718 52.381 0.00 0.00 0.00 5.14
33 34 1.682087 GGAAAAAGGACTGGATCGGGG 60.682 57.143 0.00 0.00 0.00 5.73
34 35 1.004394 GAAAAAGGACTGGATCGGGGT 59.996 52.381 0.00 0.00 0.00 4.95
35 36 1.961133 AAAAGGACTGGATCGGGGTA 58.039 50.000 0.00 0.00 0.00 3.69
36 37 1.961133 AAAGGACTGGATCGGGGTAA 58.039 50.000 0.00 0.00 0.00 2.85
37 38 1.961133 AAGGACTGGATCGGGGTAAA 58.039 50.000 0.00 0.00 0.00 2.01
38 39 1.961133 AGGACTGGATCGGGGTAAAA 58.039 50.000 0.00 0.00 0.00 1.52
39 40 1.558294 AGGACTGGATCGGGGTAAAAC 59.442 52.381 0.00 0.00 0.00 2.43
40 41 1.407851 GGACTGGATCGGGGTAAAACC 60.408 57.143 0.00 0.00 37.60 3.27
44 45 0.745486 GGATCGGGGTAAAACCGGTG 60.745 60.000 8.52 0.00 46.49 4.94
45 46 0.745486 GATCGGGGTAAAACCGGTGG 60.745 60.000 8.52 0.00 46.49 4.61
47 48 3.169378 GGGGTAAAACCGGTGGGA 58.831 61.111 8.52 0.00 39.83 4.37
48 49 1.001764 GGGGTAAAACCGGTGGGAG 60.002 63.158 8.52 0.00 39.83 4.30
49 50 1.001764 GGGTAAAACCGGTGGGAGG 60.002 63.158 8.52 0.00 39.83 4.30
50 51 1.001764 GGTAAAACCGGTGGGAGGG 60.002 63.158 8.52 0.00 36.97 4.30
51 52 1.763120 GTAAAACCGGTGGGAGGGT 59.237 57.895 8.52 0.00 38.44 4.34
52 53 0.983467 GTAAAACCGGTGGGAGGGTA 59.017 55.000 8.52 0.00 34.85 3.69
53 54 1.561076 GTAAAACCGGTGGGAGGGTAT 59.439 52.381 8.52 0.00 34.85 2.73
54 55 1.969713 AAAACCGGTGGGAGGGTATA 58.030 50.000 8.52 0.00 34.85 1.47
55 56 2.201523 AAACCGGTGGGAGGGTATAT 57.798 50.000 8.52 0.00 34.85 0.86
56 57 1.725803 AACCGGTGGGAGGGTATATC 58.274 55.000 8.52 0.00 34.85 1.63
57 58 0.564171 ACCGGTGGGAGGGTATATCA 59.436 55.000 6.12 0.00 33.95 2.15
58 59 1.061967 ACCGGTGGGAGGGTATATCAA 60.062 52.381 6.12 0.00 33.95 2.57
59 60 2.266279 CCGGTGGGAGGGTATATCAAT 58.734 52.381 0.00 0.00 34.06 2.57
60 61 2.027192 CCGGTGGGAGGGTATATCAATG 60.027 54.545 0.00 0.00 34.06 2.82
61 62 2.903784 CGGTGGGAGGGTATATCAATGA 59.096 50.000 0.00 0.00 0.00 2.57
62 63 3.326588 CGGTGGGAGGGTATATCAATGAA 59.673 47.826 0.00 0.00 0.00 2.57
63 64 4.202419 CGGTGGGAGGGTATATCAATGAAA 60.202 45.833 0.00 0.00 0.00 2.69
64 65 5.689031 CGGTGGGAGGGTATATCAATGAAAA 60.689 44.000 0.00 0.00 0.00 2.29
65 66 6.133356 GGTGGGAGGGTATATCAATGAAAAA 58.867 40.000 0.00 0.00 0.00 1.94
81 82 3.897819 AAAAATAGCGCGCTACAGC 57.102 47.368 40.42 6.98 37.78 4.40
82 83 1.083489 AAAAATAGCGCGCTACAGCA 58.917 45.000 40.42 23.17 42.21 4.41
83 84 1.083489 AAAATAGCGCGCTACAGCAA 58.917 45.000 40.42 22.36 42.21 3.91
84 85 1.083489 AAATAGCGCGCTACAGCAAA 58.917 45.000 40.42 21.55 42.21 3.68
85 86 1.083489 AATAGCGCGCTACAGCAAAA 58.917 45.000 40.42 20.74 42.21 2.44
86 87 1.299541 ATAGCGCGCTACAGCAAAAT 58.700 45.000 40.42 22.12 42.21 1.82
87 88 1.929230 TAGCGCGCTACAGCAAAATA 58.071 45.000 35.48 13.06 42.21 1.40
88 89 0.652592 AGCGCGCTACAGCAAAATAG 59.347 50.000 35.79 0.00 42.21 1.73
89 90 0.925721 GCGCGCTACAGCAAAATAGC 60.926 55.000 26.67 0.00 42.21 2.97
92 93 3.533913 GCTACAGCAAAATAGCGGC 57.466 52.632 0.00 0.00 41.59 6.53
93 94 0.316196 GCTACAGCAAAATAGCGGCG 60.316 55.000 0.51 0.51 41.59 6.46
94 95 1.286501 CTACAGCAAAATAGCGGCGA 58.713 50.000 12.98 0.00 40.15 5.54
95 96 1.003851 TACAGCAAAATAGCGGCGAC 58.996 50.000 12.98 1.23 40.15 5.19
96 97 1.062525 CAGCAAAATAGCGGCGACC 59.937 57.895 12.98 0.00 40.15 4.79
97 98 1.078426 AGCAAAATAGCGGCGACCT 60.078 52.632 12.98 0.56 40.15 3.85
98 99 1.090052 AGCAAAATAGCGGCGACCTC 61.090 55.000 12.98 0.00 40.15 3.85
99 100 1.366111 GCAAAATAGCGGCGACCTCA 61.366 55.000 12.98 0.00 0.00 3.86
100 101 1.083489 CAAAATAGCGGCGACCTCAA 58.917 50.000 12.98 0.00 0.00 3.02
101 102 1.466950 CAAAATAGCGGCGACCTCAAA 59.533 47.619 12.98 0.00 0.00 2.69
102 103 1.816074 AAATAGCGGCGACCTCAAAA 58.184 45.000 12.98 0.00 0.00 2.44
103 104 2.038387 AATAGCGGCGACCTCAAAAT 57.962 45.000 12.98 0.00 0.00 1.82
104 105 2.902705 ATAGCGGCGACCTCAAAATA 57.097 45.000 12.98 0.00 0.00 1.40
105 106 2.902705 TAGCGGCGACCTCAAAATAT 57.097 45.000 12.98 0.00 0.00 1.28
106 107 1.299541 AGCGGCGACCTCAAAATATG 58.700 50.000 12.98 0.00 0.00 1.78
107 108 0.317020 GCGGCGACCTCAAAATATGC 60.317 55.000 12.98 0.00 0.00 3.14
108 109 1.299541 CGGCGACCTCAAAATATGCT 58.700 50.000 0.00 0.00 0.00 3.79
109 110 2.479837 CGGCGACCTCAAAATATGCTA 58.520 47.619 0.00 0.00 0.00 3.49
110 111 3.067106 CGGCGACCTCAAAATATGCTAT 58.933 45.455 0.00 0.00 0.00 2.97
111 112 3.498397 CGGCGACCTCAAAATATGCTATT 59.502 43.478 0.00 0.00 0.00 1.73
112 113 4.688879 CGGCGACCTCAAAATATGCTATTA 59.311 41.667 0.00 0.00 0.00 0.98
113 114 5.163953 CGGCGACCTCAAAATATGCTATTAG 60.164 44.000 0.00 0.00 0.00 1.73
114 115 5.390991 GGCGACCTCAAAATATGCTATTAGC 60.391 44.000 8.80 8.80 42.82 3.09
115 116 5.668866 GCGACCTCAAAATATGCTATTAGCG 60.669 44.000 10.94 0.00 46.26 4.26
116 117 5.405571 CGACCTCAAAATATGCTATTAGCGT 59.594 40.000 14.53 14.53 46.26 5.07
117 118 6.545504 ACCTCAAAATATGCTATTAGCGTG 57.454 37.500 18.61 3.72 46.26 5.34
118 119 5.049405 ACCTCAAAATATGCTATTAGCGTGC 60.049 40.000 18.61 0.00 46.26 5.34
119 120 5.180117 CCTCAAAATATGCTATTAGCGTGCT 59.820 40.000 18.61 0.00 46.26 4.40
120 121 6.368791 CCTCAAAATATGCTATTAGCGTGCTA 59.631 38.462 18.61 0.00 46.26 3.49
121 122 7.065085 CCTCAAAATATGCTATTAGCGTGCTAT 59.935 37.037 18.61 5.81 46.26 2.97
122 123 8.996024 TCAAAATATGCTATTAGCGTGCTATA 57.004 30.769 18.61 7.66 46.26 1.31
123 124 9.599866 TCAAAATATGCTATTAGCGTGCTATAT 57.400 29.630 18.61 9.39 46.26 0.86
124 125 9.855361 CAAAATATGCTATTAGCGTGCTATATC 57.145 33.333 18.61 0.00 46.26 1.63
125 126 9.599866 AAAATATGCTATTAGCGTGCTATATCA 57.400 29.630 18.61 0.00 46.26 2.15
126 127 8.581057 AATATGCTATTAGCGTGCTATATCAC 57.419 34.615 18.61 0.00 46.26 3.06
146 147 0.778815 GCTACAGCGTGCTATTAGCG 59.221 55.000 15.09 0.00 46.26 4.26
147 148 1.599667 GCTACAGCGTGCTATTAGCGA 60.600 52.381 15.09 0.00 46.26 4.93
148 149 2.311462 CTACAGCGTGCTATTAGCGAG 58.689 52.381 10.94 8.24 46.26 5.03
149 150 0.738975 ACAGCGTGCTATTAGCGAGA 59.261 50.000 10.94 0.00 46.26 4.04
150 151 1.124462 CAGCGTGCTATTAGCGAGAC 58.876 55.000 10.94 3.28 46.26 3.36
151 152 0.317103 AGCGTGCTATTAGCGAGACG 60.317 55.000 17.79 17.79 46.26 4.18
152 153 0.591741 GCGTGCTATTAGCGAGACGT 60.592 55.000 21.02 0.00 46.26 4.34
153 154 1.823828 CGTGCTATTAGCGAGACGTT 58.176 50.000 15.20 0.00 46.26 3.99
154 155 1.513178 CGTGCTATTAGCGAGACGTTG 59.487 52.381 15.20 0.00 46.26 4.10
155 156 2.527100 GTGCTATTAGCGAGACGTTGT 58.473 47.619 10.94 0.00 46.26 3.32
156 157 3.688272 GTGCTATTAGCGAGACGTTGTA 58.312 45.455 10.94 0.00 46.26 2.41
157 158 3.481388 GTGCTATTAGCGAGACGTTGTAC 59.519 47.826 10.94 0.00 46.26 2.90
158 159 3.127376 TGCTATTAGCGAGACGTTGTACA 59.873 43.478 10.94 0.00 46.26 2.90
159 160 3.481388 GCTATTAGCGAGACGTTGTACAC 59.519 47.826 0.00 0.00 0.00 2.90
160 161 3.844577 ATTAGCGAGACGTTGTACACT 57.155 42.857 0.00 0.00 0.00 3.55
161 162 2.606717 TAGCGAGACGTTGTACACTG 57.393 50.000 0.00 0.00 0.00 3.66
162 163 0.949397 AGCGAGACGTTGTACACTGA 59.051 50.000 0.00 0.00 0.00 3.41
163 164 1.540267 AGCGAGACGTTGTACACTGAT 59.460 47.619 0.00 0.00 0.00 2.90
164 165 2.745821 AGCGAGACGTTGTACACTGATA 59.254 45.455 0.00 0.00 0.00 2.15
165 166 3.377485 AGCGAGACGTTGTACACTGATAT 59.623 43.478 0.00 0.00 0.00 1.63
166 167 4.573607 AGCGAGACGTTGTACACTGATATA 59.426 41.667 0.00 0.00 0.00 0.86
167 168 5.238868 AGCGAGACGTTGTACACTGATATAT 59.761 40.000 0.00 0.00 0.00 0.86
168 169 5.913514 GCGAGACGTTGTACACTGATATATT 59.086 40.000 0.00 0.00 0.00 1.28
169 170 6.417044 GCGAGACGTTGTACACTGATATATTT 59.583 38.462 0.00 0.00 0.00 1.40
170 171 7.588854 GCGAGACGTTGTACACTGATATATTTA 59.411 37.037 0.00 0.00 0.00 1.40
171 172 9.104126 CGAGACGTTGTACACTGATATATTTAG 57.896 37.037 0.00 0.00 0.00 1.85
172 173 8.798748 AGACGTTGTACACTGATATATTTAGC 57.201 34.615 0.00 0.00 0.00 3.09
173 174 7.590322 AGACGTTGTACACTGATATATTTAGCG 59.410 37.037 0.00 0.00 0.00 4.26
174 175 7.420002 ACGTTGTACACTGATATATTTAGCGA 58.580 34.615 0.00 0.00 0.00 4.93
175 176 7.590322 ACGTTGTACACTGATATATTTAGCGAG 59.410 37.037 0.00 0.00 0.00 5.03
176 177 7.801783 CGTTGTACACTGATATATTTAGCGAGA 59.198 37.037 0.00 0.00 0.00 4.04
177 178 8.903723 GTTGTACACTGATATATTTAGCGAGAC 58.096 37.037 0.00 0.00 0.00 3.36
178 179 8.161699 TGTACACTGATATATTTAGCGAGACA 57.838 34.615 0.00 0.00 0.00 3.41
179 180 8.626526 TGTACACTGATATATTTAGCGAGACAA 58.373 33.333 0.00 0.00 0.00 3.18
180 181 9.627395 GTACACTGATATATTTAGCGAGACAAT 57.373 33.333 0.00 0.00 0.00 2.71
182 183 9.197694 ACACTGATATATTTAGCGAGACAATTC 57.802 33.333 0.00 0.00 0.00 2.17
183 184 9.416794 CACTGATATATTTAGCGAGACAATTCT 57.583 33.333 0.00 0.00 33.37 2.40
184 185 9.988815 ACTGATATATTTAGCGAGACAATTCTT 57.011 29.630 0.00 0.00 29.47 2.52
186 187 9.981114 TGATATATTTAGCGAGACAATTCTTCA 57.019 29.630 0.00 0.00 29.47 3.02
190 191 6.569228 TTTAGCGAGACAATTCTTCATACG 57.431 37.500 0.00 0.00 29.47 3.06
191 192 2.860735 AGCGAGACAATTCTTCATACGC 59.139 45.455 0.00 0.00 43.00 4.42
192 193 2.860735 GCGAGACAATTCTTCATACGCT 59.139 45.455 0.00 0.00 40.28 5.07
193 194 4.042398 GCGAGACAATTCTTCATACGCTA 58.958 43.478 0.00 0.00 40.28 4.26
194 195 4.681942 GCGAGACAATTCTTCATACGCTAT 59.318 41.667 0.00 0.00 40.28 2.97
195 196 5.856986 GCGAGACAATTCTTCATACGCTATA 59.143 40.000 0.00 0.00 40.28 1.31
196 197 6.032985 GCGAGACAATTCTTCATACGCTATAG 59.967 42.308 0.00 0.00 40.28 1.31
197 198 6.032985 CGAGACAATTCTTCATACGCTATAGC 59.967 42.308 15.09 15.09 32.28 2.97
238 239 4.935808 GGGGTATATCCACGAATCATTCAC 59.064 45.833 3.96 0.00 38.11 3.18
242 243 6.307318 GGTATATCCACGAATCATTCACGTAC 59.693 42.308 0.00 0.00 38.47 3.67
250 251 5.068723 ACGAATCATTCACGTACTTATCCCT 59.931 40.000 0.00 0.00 38.47 4.20
254 255 2.832643 TCACGTACTTATCCCTCCCA 57.167 50.000 0.00 0.00 0.00 4.37
255 256 2.662866 TCACGTACTTATCCCTCCCAG 58.337 52.381 0.00 0.00 0.00 4.45
278 279 1.551883 GAACCATTGCCCAAAGCTGAT 59.448 47.619 0.00 0.00 44.23 2.90
280 281 0.899720 CCATTGCCCAAAGCTGATGT 59.100 50.000 0.00 0.00 44.23 3.06
281 282 1.404986 CCATTGCCCAAAGCTGATGTG 60.405 52.381 0.00 0.00 44.23 3.21
305 306 1.613255 GGGAAAGTGCCCGAAGATTCA 60.613 52.381 0.00 0.00 38.58 2.57
321 322 6.540438 AAGATTCATGCAAAGTGAATGGAT 57.460 33.333 16.69 0.00 44.10 3.41
325 326 1.630223 TGCAAAGTGAATGGATGGCA 58.370 45.000 0.00 0.00 0.00 4.92
327 328 2.166870 TGCAAAGTGAATGGATGGCATC 59.833 45.455 19.23 19.23 0.00 3.91
337 338 1.017387 GGATGGCATCAAGGACGTTC 58.983 55.000 27.39 4.45 0.00 3.95
359 360 4.832823 TCGCTGGGAAATGTCTCATATCTA 59.167 41.667 0.00 0.00 32.34 1.98
362 363 5.406780 GCTGGGAAATGTCTCATATCTAACG 59.593 44.000 0.00 0.00 32.34 3.18
367 368 4.569761 ATGTCTCATATCTAACGTGCGT 57.430 40.909 0.00 0.00 0.00 5.24
399 400 7.465989 TGATTTCCGTTTTATTATTGTCGGTC 58.534 34.615 0.00 0.00 39.14 4.79
411 412 0.034337 TGTCGGTCCAACACCTAAGC 59.966 55.000 0.00 0.00 44.21 3.09
425 426 5.937111 ACACCTAAGCTTTTCCTCTGTTTA 58.063 37.500 3.20 0.00 0.00 2.01
431 432 3.003378 AGCTTTTCCTCTGTTTACGTTGC 59.997 43.478 0.00 0.00 0.00 4.17
432 433 3.242936 GCTTTTCCTCTGTTTACGTTGCA 60.243 43.478 0.00 0.00 0.00 4.08
433 434 3.955771 TTTCCTCTGTTTACGTTGCAC 57.044 42.857 0.00 0.00 0.00 4.57
456 457 3.298958 TGGCTCACCAGTCCGATC 58.701 61.111 0.00 0.00 42.67 3.69
458 459 0.904865 TGGCTCACCAGTCCGATCTT 60.905 55.000 0.00 0.00 42.67 2.40
460 461 1.480954 GGCTCACCAGTCCGATCTTAA 59.519 52.381 0.00 0.00 35.26 1.85
461 462 2.541556 GCTCACCAGTCCGATCTTAAC 58.458 52.381 0.00 0.00 0.00 2.01
462 463 2.738964 GCTCACCAGTCCGATCTTAACC 60.739 54.545 0.00 0.00 0.00 2.85
471 485 2.503765 TCCGATCTTAACCCTGCATGAA 59.496 45.455 0.00 0.00 0.00 2.57
509 523 9.313118 TCGAATCGAAAAATGAAGATTAGATGA 57.687 29.630 1.57 0.00 32.57 2.92
510 524 9.920826 CGAATCGAAAAATGAAGATTAGATGAA 57.079 29.630 0.00 0.00 33.95 2.57
519 533 9.972106 AAATGAAGATTAGATGAAGAAGAACCT 57.028 29.630 0.00 0.00 0.00 3.50
520 534 9.972106 AATGAAGATTAGATGAAGAAGAACCTT 57.028 29.630 0.00 0.00 0.00 3.50
521 535 9.612066 ATGAAGATTAGATGAAGAAGAACCTTC 57.388 33.333 0.00 0.00 42.09 3.46
522 536 8.043710 TGAAGATTAGATGAAGAAGAACCTTCC 58.956 37.037 3.33 0.00 41.29 3.46
523 537 6.894682 AGATTAGATGAAGAAGAACCTTCCC 58.105 40.000 3.33 0.00 41.29 3.97
524 538 6.676189 AGATTAGATGAAGAAGAACCTTCCCT 59.324 38.462 3.33 0.00 41.29 4.20
525 539 4.835284 AGATGAAGAAGAACCTTCCCTC 57.165 45.455 3.33 2.34 41.29 4.30
526 540 4.171234 AGATGAAGAAGAACCTTCCCTCA 58.829 43.478 9.88 9.88 41.29 3.86
527 541 4.599241 AGATGAAGAAGAACCTTCCCTCAA 59.401 41.667 10.93 0.55 41.29 3.02
528 542 4.788925 TGAAGAAGAACCTTCCCTCAAA 57.211 40.909 3.33 0.00 41.29 2.69
529 543 5.124036 TGAAGAAGAACCTTCCCTCAAAA 57.876 39.130 3.33 0.00 41.29 2.44
530 544 5.515106 TGAAGAAGAACCTTCCCTCAAAAA 58.485 37.500 3.33 0.00 41.29 1.94
632 658 3.316308 GGCTCACTGAAACATGACAAAGT 59.684 43.478 0.00 0.00 0.00 2.66
652 1022 2.681344 GTGAAGCGGGGAAATACGAAAT 59.319 45.455 0.00 0.00 0.00 2.17
681 1051 4.647291 ACAACAAAGAGATAAGCGTTCG 57.353 40.909 0.00 0.00 0.00 3.95
730 1109 4.467438 ACCAAATATTTTTCCTGGGCAGAG 59.533 41.667 7.79 0.00 0.00 3.35
947 1374 2.159382 GTTGAAATTTGAGGGGCTCGA 58.841 47.619 0.00 0.00 32.35 4.04
1008 1439 3.520862 GCCGGCACCATGGACATG 61.521 66.667 24.80 7.72 38.51 3.21
1026 1469 3.460712 ACATGGATCTCAATGATGTCCCA 59.539 43.478 10.32 4.54 35.14 4.37
1125 1568 1.141019 GATGCTGAAGGACGCCGTA 59.859 57.895 0.00 0.00 0.00 4.02
1451 1894 0.888619 CTGGAGGACTACTTCGTGCA 59.111 55.000 0.00 0.00 38.03 4.57
1529 1972 4.814294 CCCCGAGCACACGCCTAC 62.814 72.222 0.00 0.00 39.83 3.18
1570 2013 6.042638 TCACTCTAATCTTTCTTCACCCAG 57.957 41.667 0.00 0.00 0.00 4.45
1587 2036 3.094572 CCCAGCACCATCTCAGAAATTT 58.905 45.455 0.00 0.00 0.00 1.82
1588 2037 3.119245 CCCAGCACCATCTCAGAAATTTG 60.119 47.826 0.00 0.00 0.00 2.32
1683 2142 5.760743 GCCTTAGGTTATGGTTGATCTCTTC 59.239 44.000 0.00 0.00 0.00 2.87
1777 2236 2.018515 TGGACCGAAGAAACACCAAAC 58.981 47.619 0.00 0.00 0.00 2.93
1855 2384 0.250945 TTTGTACAGCCGGAATGCCA 60.251 50.000 5.05 0.50 0.00 4.92
1913 2443 2.454055 GCTCTGTGTGCACTTTTGAAC 58.546 47.619 19.41 7.11 0.00 3.18
2011 2560 4.750098 TGTTTGTACTTGAACTAGCAGCTC 59.250 41.667 0.00 0.00 0.00 4.09
2020 2569 1.039785 ACTAGCAGCTCGCAGATCCA 61.040 55.000 0.00 0.00 46.13 3.41
2021 2570 0.597118 CTAGCAGCTCGCAGATCCAC 60.597 60.000 0.00 0.00 46.13 4.02
2022 2571 1.322538 TAGCAGCTCGCAGATCCACA 61.323 55.000 0.00 0.00 46.13 4.17
2023 2572 2.459442 GCAGCTCGCAGATCCACAC 61.459 63.158 3.64 0.00 41.79 3.82
2024 2573 1.217511 CAGCTCGCAGATCCACACT 59.782 57.895 0.00 0.00 33.89 3.55
2025 2574 0.390866 CAGCTCGCAGATCCACACTT 60.391 55.000 0.00 0.00 33.89 3.16
2026 2575 0.108424 AGCTCGCAGATCCACACTTC 60.108 55.000 0.00 0.00 33.89 3.01
2027 2576 0.108424 GCTCGCAGATCCACACTTCT 60.108 55.000 0.00 0.00 33.89 2.85
2028 2577 1.919918 CTCGCAGATCCACACTTCTC 58.080 55.000 0.00 0.00 33.89 2.87
2029 2578 0.532573 TCGCAGATCCACACTTCTCC 59.467 55.000 0.00 0.00 0.00 3.71
2030 2579 0.534412 CGCAGATCCACACTTCTCCT 59.466 55.000 0.00 0.00 0.00 3.69
2031 2580 1.470632 CGCAGATCCACACTTCTCCTC 60.471 57.143 0.00 0.00 0.00 3.71
2032 2581 1.552337 GCAGATCCACACTTCTCCTCA 59.448 52.381 0.00 0.00 0.00 3.86
2033 2582 2.170187 GCAGATCCACACTTCTCCTCAT 59.830 50.000 0.00 0.00 0.00 2.90
2034 2583 3.370315 GCAGATCCACACTTCTCCTCATT 60.370 47.826 0.00 0.00 0.00 2.57
2035 2584 4.141846 GCAGATCCACACTTCTCCTCATTA 60.142 45.833 0.00 0.00 0.00 1.90
2036 2585 5.355596 CAGATCCACACTTCTCCTCATTAC 58.644 45.833 0.00 0.00 0.00 1.89
2037 2586 4.407296 AGATCCACACTTCTCCTCATTACC 59.593 45.833 0.00 0.00 0.00 2.85
2038 2587 3.791320 TCCACACTTCTCCTCATTACCT 58.209 45.455 0.00 0.00 0.00 3.08
2039 2588 3.515502 TCCACACTTCTCCTCATTACCTG 59.484 47.826 0.00 0.00 0.00 4.00
2040 2589 3.261897 CCACACTTCTCCTCATTACCTGT 59.738 47.826 0.00 0.00 0.00 4.00
2041 2590 4.499183 CACACTTCTCCTCATTACCTGTC 58.501 47.826 0.00 0.00 0.00 3.51
2042 2591 4.221703 CACACTTCTCCTCATTACCTGTCT 59.778 45.833 0.00 0.00 0.00 3.41
2043 2592 4.464597 ACACTTCTCCTCATTACCTGTCTC 59.535 45.833 0.00 0.00 0.00 3.36
2044 2593 4.464244 CACTTCTCCTCATTACCTGTCTCA 59.536 45.833 0.00 0.00 0.00 3.27
2045 2594 5.047021 CACTTCTCCTCATTACCTGTCTCAA 60.047 44.000 0.00 0.00 0.00 3.02
2046 2595 5.544176 ACTTCTCCTCATTACCTGTCTCAAA 59.456 40.000 0.00 0.00 0.00 2.69
2047 2596 6.043243 ACTTCTCCTCATTACCTGTCTCAAAA 59.957 38.462 0.00 0.00 0.00 2.44
2048 2597 6.433847 TCTCCTCATTACCTGTCTCAAAAA 57.566 37.500 0.00 0.00 0.00 1.94
2250 2815 1.746220 ACTAGGAGCTGTCAACTAGCG 59.254 52.381 0.00 0.00 45.61 4.26
2347 2912 3.667497 TGTGATGACTTCGCTCTTTCT 57.333 42.857 3.84 0.00 35.78 2.52
2351 2916 0.392706 TGACTTCGCTCTTTCTGGCA 59.607 50.000 0.00 0.00 0.00 4.92
2386 2958 2.223502 CGGCTAGTTCTATGTTCGCAGA 60.224 50.000 0.00 0.00 0.00 4.26
2411 2983 3.871594 GGTAGAGTGGTGGATGAAAATCG 59.128 47.826 0.00 0.00 0.00 3.34
2420 2992 3.087781 TGGATGAAAATCGTGGCATCAA 58.912 40.909 0.00 0.00 39.02 2.57
2458 3030 3.691118 TCTCTTTGGCAGACATTATGCAC 59.309 43.478 0.00 0.00 45.68 4.57
2459 3031 3.419943 TCTTTGGCAGACATTATGCACA 58.580 40.909 0.00 0.00 45.68 4.57
2548 3120 7.274686 TCGAAAAGAAAAGAAAAATGTGTGTCC 59.725 33.333 0.00 0.00 0.00 4.02
2596 3168 2.028112 AGTAGCATTGCTTCTTCGTCCA 60.028 45.455 17.71 0.00 40.44 4.02
2760 3332 8.985315 ATATAAGGCATTTGAGACAAAGATGA 57.015 30.769 0.00 0.00 0.00 2.92
2761 3333 7.893124 ATAAGGCATTTGAGACAAAGATGAT 57.107 32.000 0.00 0.00 0.00 2.45
2762 3334 5.578005 AGGCATTTGAGACAAAGATGATG 57.422 39.130 0.00 0.00 0.00 3.07
2814 3388 5.414454 TCAGTACAATGTTGGGTATGAAAGC 59.586 40.000 0.00 0.00 0.00 3.51
2898 3472 1.017387 GCTCCCAGGCATTAAACTCG 58.983 55.000 0.00 0.00 0.00 4.18
2965 3541 3.446161 TGATAGGTGTTGGTCTTACTCCG 59.554 47.826 0.00 0.00 35.01 4.63
3004 3580 3.495434 TGTGTTAGGATCCAACGGTTT 57.505 42.857 15.82 0.00 0.00 3.27
3005 3581 3.822940 TGTGTTAGGATCCAACGGTTTT 58.177 40.909 15.82 0.00 0.00 2.43
3006 3582 4.208746 TGTGTTAGGATCCAACGGTTTTT 58.791 39.130 15.82 0.00 0.00 1.94
3007 3583 4.276431 TGTGTTAGGATCCAACGGTTTTTC 59.724 41.667 15.82 3.96 0.00 2.29
3008 3584 4.517832 GTGTTAGGATCCAACGGTTTTTCT 59.482 41.667 15.82 0.00 0.00 2.52
3009 3585 5.009310 GTGTTAGGATCCAACGGTTTTTCTT 59.991 40.000 15.82 0.00 0.00 2.52
3010 3586 6.205270 GTGTTAGGATCCAACGGTTTTTCTTA 59.795 38.462 15.82 0.00 0.00 2.10
3011 3587 6.943718 TGTTAGGATCCAACGGTTTTTCTTAT 59.056 34.615 15.82 0.00 0.00 1.73
3012 3588 7.449086 TGTTAGGATCCAACGGTTTTTCTTATT 59.551 33.333 15.82 0.00 0.00 1.40
3013 3589 6.911250 AGGATCCAACGGTTTTTCTTATTT 57.089 33.333 15.82 0.00 0.00 1.40
3014 3590 9.517868 TTAGGATCCAACGGTTTTTCTTATTTA 57.482 29.630 15.82 0.00 0.00 1.40
3015 3591 8.051901 AGGATCCAACGGTTTTTCTTATTTAG 57.948 34.615 15.82 0.00 0.00 1.85
3016 3592 7.886446 AGGATCCAACGGTTTTTCTTATTTAGA 59.114 33.333 15.82 0.00 0.00 2.10
3017 3593 8.182227 GGATCCAACGGTTTTTCTTATTTAGAG 58.818 37.037 6.95 0.00 33.51 2.43
3025 3601 9.724839 CGGTTTTTCTTATTTAGAGTGTTTGAA 57.275 29.630 0.00 0.00 33.51 2.69
3305 3890 7.111593 GTCTAACGTCTAAACTGCACATTTTTG 59.888 37.037 0.00 0.00 0.00 2.44
3307 3892 5.034152 ACGTCTAAACTGCACATTTTTGTG 58.966 37.500 1.80 1.80 42.32 3.33
3308 3893 4.440758 CGTCTAAACTGCACATTTTTGTGG 59.559 41.667 8.08 0.00 39.97 4.17
3309 3894 5.587289 GTCTAAACTGCACATTTTTGTGGA 58.413 37.500 8.08 4.37 39.97 4.02
3310 3895 6.039616 GTCTAAACTGCACATTTTTGTGGAA 58.960 36.000 8.08 0.00 39.54 3.53
3311 3896 6.533367 GTCTAAACTGCACATTTTTGTGGAAA 59.467 34.615 8.08 0.00 39.54 3.13
3312 3897 7.064016 GTCTAAACTGCACATTTTTGTGGAAAA 59.936 33.333 8.08 0.00 39.54 2.29
3313 3898 6.756299 AAACTGCACATTTTTGTGGAAAAT 57.244 29.167 8.08 0.00 41.25 1.82
3329 3938 8.870160 TGTGGAAAATTTACTCTCATGTTTTG 57.130 30.769 0.00 0.00 0.00 2.44
3358 3967 4.613925 TTTGTGCCTGCAATTTCCATAA 57.386 36.364 0.00 0.00 0.00 1.90
3362 3972 5.558818 TGTGCCTGCAATTTCCATAATTTT 58.441 33.333 0.00 0.00 0.00 1.82
3364 3974 5.065090 GTGCCTGCAATTTCCATAATTTTCC 59.935 40.000 0.00 0.00 0.00 3.13
3441 4441 6.000246 TCCCACATGAATTCAAGCTACATA 58.000 37.500 13.09 0.00 0.00 2.29
3536 4537 7.011499 TGCTAAAAAGACACACCTCCTAATA 57.989 36.000 0.00 0.00 0.00 0.98
3537 4538 7.630082 TGCTAAAAAGACACACCTCCTAATAT 58.370 34.615 0.00 0.00 0.00 1.28
3585 4598 2.036098 TCGCTGTCCCGGAACCTA 59.964 61.111 0.73 0.00 0.00 3.08
3637 4650 1.064166 CAAGTTCCTGATCCTGGCCAT 60.064 52.381 5.51 0.00 0.00 4.40
3640 4653 1.355718 TTCCTGATCCTGGCCATCCC 61.356 60.000 5.51 0.00 0.00 3.85
3672 4685 2.596338 TCGTCACTCCAGGCGACA 60.596 61.111 0.00 0.00 0.00 4.35
3686 4699 2.667318 CGACACGTGCGCCTTCATT 61.667 57.895 17.22 0.00 0.00 2.57
3712 4731 0.671781 AGATTGAGCGTGCCACAGAC 60.672 55.000 0.00 0.00 0.00 3.51
3720 4739 2.042831 GTGCCACAGACCATCAGGC 61.043 63.158 0.00 0.00 45.41 4.85
3958 4984 5.646606 TGGAAACTTTGTTGCTGTCTTAAC 58.353 37.500 0.00 0.00 0.00 2.01
3965 4991 2.225491 TGTTGCTGTCTTAACGATTGCC 59.775 45.455 0.00 0.00 0.00 4.52
3984 5011 1.144913 CCAAGGGGAGTTTCCAACAGA 59.855 52.381 0.00 0.00 38.64 3.41
4021 5052 5.818136 TCTTGTAGCTATTTCAACATGGC 57.182 39.130 0.00 0.00 0.00 4.40
4090 5121 6.541278 TTCTATCCGAGAACTGAAGTATTCGA 59.459 38.462 14.49 0.00 43.19 3.71
4138 5170 8.093307 GGACTGATATATCTTGAGCATTGAGAA 58.907 37.037 13.79 0.00 0.00 2.87
4164 5196 5.406477 GGGGTGTTTCAGTTACTTAGTTACG 59.594 44.000 0.00 0.00 0.00 3.18
4196 5228 9.625747 AGAGTATGTTTACTAGTAGTACTTCCC 57.374 37.037 8.40 0.00 38.81 3.97
4202 5234 7.124750 TGTTTACTAGTAGTACTTCCCCCATTC 59.875 40.741 8.40 0.00 28.93 2.67
4204 5236 3.502051 AGTAGTACTTCCCCCATTCCA 57.498 47.619 0.00 0.00 0.00 3.53
4205 5237 4.022359 AGTAGTACTTCCCCCATTCCAT 57.978 45.455 0.00 0.00 0.00 3.41
4206 5238 5.166013 AGTAGTACTTCCCCCATTCCATA 57.834 43.478 0.00 0.00 0.00 2.74
4208 5240 6.158260 AGTAGTACTTCCCCCATTCCATAAT 58.842 40.000 0.00 0.00 0.00 1.28
4209 5241 5.324832 AGTACTTCCCCCATTCCATAATG 57.675 43.478 0.00 0.00 41.90 1.90
4210 5242 4.731929 AGTACTTCCCCCATTCCATAATGT 59.268 41.667 0.00 0.00 40.84 2.71
4211 5243 5.914716 AGTACTTCCCCCATTCCATAATGTA 59.085 40.000 0.00 0.00 40.84 2.29
4243 5275 9.736023 ACATGTAGATTTTCTGAAAAGTCAAAC 57.264 29.630 19.14 16.32 34.49 2.93
4339 5371 7.577303 TGAAAATAGAACTCATTAGGGAGCAT 58.423 34.615 0.00 0.00 38.50 3.79
4343 5375 8.677870 AATAGAACTCATTAGGGAGCATCTAT 57.322 34.615 10.73 10.73 42.77 1.98
4374 5406 8.872845 CAGGTGCCTGAAATTTTTATATGTTTC 58.127 33.333 12.66 0.00 46.30 2.78
4397 5429 3.958147 AGTTGATTTTTCCCTGAACCGTT 59.042 39.130 0.00 0.00 0.00 4.44
4447 5479 6.708054 AGAAACTATTTGTCCTGAGTTGACTG 59.292 38.462 0.00 0.00 32.57 3.51
4449 5481 6.174720 ACTATTTGTCCTGAGTTGACTGAA 57.825 37.500 0.00 0.00 33.83 3.02
4458 5490 8.321353 TGTCCTGAGTTGACTGAATAATTATGT 58.679 33.333 0.00 0.00 33.83 2.29
4488 5521 5.824624 CAGTTATGTTCAGTATCAGCCCATT 59.175 40.000 0.00 0.00 0.00 3.16
4492 5525 4.264253 TGTTCAGTATCAGCCCATTGAAG 58.736 43.478 0.00 0.00 0.00 3.02
4515 5548 4.822350 GCCCAACAGGGAGAAAGTATTATC 59.178 45.833 4.37 0.00 46.20 1.75
4516 5549 5.377478 CCCAACAGGGAGAAAGTATTATCC 58.623 45.833 0.00 0.00 46.20 2.59
4525 5558 4.110482 AGAAAGTATTATCCGTGTCGCAC 58.890 43.478 0.58 0.58 0.00 5.34
4538 5571 1.651631 TGTCGCACGATTGATGTTACG 59.348 47.619 0.00 0.00 0.00 3.18
4543 5576 3.302434 CGCACGATTGATGTTACGTACTT 59.698 43.478 0.00 0.00 37.22 2.24
4573 5606 9.801873 TTAGTTTGTCTACAAAAACGTACTACT 57.198 29.630 9.72 3.65 46.08 2.57
4575 5608 9.971922 AGTTTGTCTACAAAAACGTACTACTAT 57.028 29.630 9.72 0.00 46.08 2.12
4578 5611 9.748708 TTGTCTACAAAAACGTACTACTATTGT 57.251 29.630 0.00 0.00 32.11 2.71
4639 5672 3.994789 CATGCACATACGCTATACATGC 58.005 45.455 0.00 0.00 0.00 4.06
4759 5794 8.086143 ACCAAACTAGTCTAACCATTATGCTA 57.914 34.615 0.00 0.00 0.00 3.49
4760 5795 8.545472 ACCAAACTAGTCTAACCATTATGCTAA 58.455 33.333 0.00 0.00 0.00 3.09
4761 5796 9.391006 CCAAACTAGTCTAACCATTATGCTAAA 57.609 33.333 0.00 0.00 0.00 1.85
4831 5866 8.765044 ATTTTGAAAACAATTTATGCAACACG 57.235 26.923 0.00 0.00 0.00 4.49
4832 5867 5.321983 TGAAAACAATTTATGCAACACGC 57.678 34.783 0.00 0.00 42.89 5.34
4833 5868 5.046529 TGAAAACAATTTATGCAACACGCT 58.953 33.333 0.00 0.00 43.06 5.07
4834 5869 5.521735 TGAAAACAATTTATGCAACACGCTT 59.478 32.000 0.00 0.00 43.06 4.68
4835 5870 5.982465 AAACAATTTATGCAACACGCTTT 57.018 30.435 0.00 0.00 43.06 3.51
4836 5871 4.970472 ACAATTTATGCAACACGCTTTG 57.030 36.364 0.00 0.00 43.06 2.77
4837 5872 4.615949 ACAATTTATGCAACACGCTTTGA 58.384 34.783 0.00 0.00 43.06 2.69
4838 5873 5.229423 ACAATTTATGCAACACGCTTTGAT 58.771 33.333 0.00 0.00 43.06 2.57
4839 5874 6.385843 ACAATTTATGCAACACGCTTTGATA 58.614 32.000 0.00 0.00 43.06 2.15
4840 5875 7.035004 ACAATTTATGCAACACGCTTTGATAT 58.965 30.769 0.00 0.00 43.06 1.63
4841 5876 7.009448 ACAATTTATGCAACACGCTTTGATATG 59.991 33.333 0.00 0.00 43.06 1.78
4842 5877 5.559427 TTATGCAACACGCTTTGATATGT 57.441 34.783 0.00 0.00 43.06 2.29
4843 5878 3.200294 TGCAACACGCTTTGATATGTG 57.800 42.857 0.88 0.00 43.06 3.21
4844 5879 2.095314 TGCAACACGCTTTGATATGTGG 60.095 45.455 0.88 0.00 43.06 4.17
4845 5880 2.161410 GCAACACGCTTTGATATGTGGA 59.839 45.455 0.88 0.00 36.67 4.02
4846 5881 3.365868 GCAACACGCTTTGATATGTGGAA 60.366 43.478 0.88 0.00 36.67 3.53
4847 5882 4.675146 GCAACACGCTTTGATATGTGGAAT 60.675 41.667 0.88 0.00 36.67 3.01
4848 5883 5.401550 CAACACGCTTTGATATGTGGAATT 58.598 37.500 0.00 0.00 36.67 2.17
4849 5884 6.550843 CAACACGCTTTGATATGTGGAATTA 58.449 36.000 0.00 0.00 36.67 1.40
4850 5885 6.751514 ACACGCTTTGATATGTGGAATTAA 57.248 33.333 0.00 0.00 36.67 1.40
4851 5886 6.785191 ACACGCTTTGATATGTGGAATTAAG 58.215 36.000 0.00 0.00 36.67 1.85
4852 5887 6.183360 ACACGCTTTGATATGTGGAATTAAGG 60.183 38.462 0.00 0.00 36.67 2.69
4853 5888 5.885912 ACGCTTTGATATGTGGAATTAAGGT 59.114 36.000 0.00 0.00 0.00 3.50
4854 5889 6.377146 ACGCTTTGATATGTGGAATTAAGGTT 59.623 34.615 0.00 0.00 0.00 3.50
4855 5890 7.554835 ACGCTTTGATATGTGGAATTAAGGTTA 59.445 33.333 0.00 0.00 0.00 2.85
4856 5891 8.402472 CGCTTTGATATGTGGAATTAAGGTTAA 58.598 33.333 0.00 0.00 0.00 2.01
4857 5892 9.516314 GCTTTGATATGTGGAATTAAGGTTAAC 57.484 33.333 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.963515 CCTTTTTCCTGTTCCCCACTG 59.036 52.381 0.00 0.00 0.00 3.66
2 3 1.856920 TCCTTTTTCCTGTTCCCCACT 59.143 47.619 0.00 0.00 0.00 4.00
3 4 1.961394 GTCCTTTTTCCTGTTCCCCAC 59.039 52.381 0.00 0.00 0.00 4.61
5 6 2.239400 CAGTCCTTTTTCCTGTTCCCC 58.761 52.381 0.00 0.00 0.00 4.81
6 7 2.158519 TCCAGTCCTTTTTCCTGTTCCC 60.159 50.000 0.00 0.00 0.00 3.97
7 8 3.223674 TCCAGTCCTTTTTCCTGTTCC 57.776 47.619 0.00 0.00 0.00 3.62
8 9 3.437049 CGATCCAGTCCTTTTTCCTGTTC 59.563 47.826 0.00 0.00 0.00 3.18
9 10 3.412386 CGATCCAGTCCTTTTTCCTGTT 58.588 45.455 0.00 0.00 0.00 3.16
10 11 2.290323 CCGATCCAGTCCTTTTTCCTGT 60.290 50.000 0.00 0.00 0.00 4.00
11 12 2.359900 CCGATCCAGTCCTTTTTCCTG 58.640 52.381 0.00 0.00 0.00 3.86
12 13 1.282157 CCCGATCCAGTCCTTTTTCCT 59.718 52.381 0.00 0.00 0.00 3.36
13 14 1.682087 CCCCGATCCAGTCCTTTTTCC 60.682 57.143 0.00 0.00 0.00 3.13
14 15 1.004394 ACCCCGATCCAGTCCTTTTTC 59.996 52.381 0.00 0.00 0.00 2.29
15 16 1.073098 ACCCCGATCCAGTCCTTTTT 58.927 50.000 0.00 0.00 0.00 1.94
16 17 1.961133 TACCCCGATCCAGTCCTTTT 58.039 50.000 0.00 0.00 0.00 2.27
17 18 1.961133 TTACCCCGATCCAGTCCTTT 58.039 50.000 0.00 0.00 0.00 3.11
18 19 1.961133 TTTACCCCGATCCAGTCCTT 58.039 50.000 0.00 0.00 0.00 3.36
19 20 1.558294 GTTTTACCCCGATCCAGTCCT 59.442 52.381 0.00 0.00 0.00 3.85
20 21 1.407851 GGTTTTACCCCGATCCAGTCC 60.408 57.143 0.00 0.00 30.04 3.85
21 22 2.034104 GGTTTTACCCCGATCCAGTC 57.966 55.000 0.00 0.00 30.04 3.51
29 30 2.360225 CCCACCGGTTTTACCCCG 60.360 66.667 2.97 0.00 45.07 5.73
30 31 1.001764 CTCCCACCGGTTTTACCCC 60.002 63.158 2.97 0.00 33.75 4.95
31 32 1.001764 CCTCCCACCGGTTTTACCC 60.002 63.158 2.97 0.00 33.75 3.69
32 33 1.001764 CCCTCCCACCGGTTTTACC 60.002 63.158 2.97 0.00 34.05 2.85
33 34 0.983467 TACCCTCCCACCGGTTTTAC 59.017 55.000 2.97 0.00 33.36 2.01
34 35 1.969713 ATACCCTCCCACCGGTTTTA 58.030 50.000 2.97 0.00 33.36 1.52
35 36 1.969713 TATACCCTCCCACCGGTTTT 58.030 50.000 2.97 0.00 33.36 2.43
36 37 2.052468 GATATACCCTCCCACCGGTTT 58.948 52.381 2.97 0.00 33.36 3.27
37 38 1.061967 TGATATACCCTCCCACCGGTT 60.062 52.381 2.97 0.00 33.36 4.44
38 39 0.564171 TGATATACCCTCCCACCGGT 59.436 55.000 0.00 0.00 36.08 5.28
39 40 1.724545 TTGATATACCCTCCCACCGG 58.275 55.000 0.00 0.00 0.00 5.28
40 41 2.903784 TCATTGATATACCCTCCCACCG 59.096 50.000 0.00 0.00 0.00 4.94
41 42 4.993705 TTCATTGATATACCCTCCCACC 57.006 45.455 0.00 0.00 0.00 4.61
63 64 1.083489 TGCTGTAGCGCGCTATTTTT 58.917 45.000 39.99 18.75 45.83 1.94
64 65 1.083489 TTGCTGTAGCGCGCTATTTT 58.917 45.000 39.99 19.54 45.83 1.82
65 66 1.083489 TTTGCTGTAGCGCGCTATTT 58.917 45.000 39.99 19.95 45.83 1.40
66 67 1.083489 TTTTGCTGTAGCGCGCTATT 58.917 45.000 39.99 20.35 45.83 1.73
67 68 1.299541 ATTTTGCTGTAGCGCGCTAT 58.700 45.000 39.99 22.30 45.83 2.97
68 69 1.858458 CTATTTTGCTGTAGCGCGCTA 59.142 47.619 35.48 35.48 45.83 4.26
69 70 0.652592 CTATTTTGCTGTAGCGCGCT 59.347 50.000 38.01 38.01 45.83 5.92
70 71 0.925721 GCTATTTTGCTGTAGCGCGC 60.926 55.000 26.66 26.66 45.83 6.86
71 72 3.133814 GCTATTTTGCTGTAGCGCG 57.866 52.632 0.00 0.00 45.83 6.86
74 75 0.316196 CGCCGCTATTTTGCTGTAGC 60.316 55.000 0.00 0.00 39.86 3.58
75 76 1.004927 GTCGCCGCTATTTTGCTGTAG 60.005 52.381 0.00 0.00 0.00 2.74
76 77 1.003851 GTCGCCGCTATTTTGCTGTA 58.996 50.000 0.00 0.00 0.00 2.74
77 78 1.644786 GGTCGCCGCTATTTTGCTGT 61.645 55.000 0.00 0.00 0.00 4.40
78 79 1.062525 GGTCGCCGCTATTTTGCTG 59.937 57.895 0.00 0.00 0.00 4.41
79 80 1.078426 AGGTCGCCGCTATTTTGCT 60.078 52.632 0.00 0.00 0.00 3.91
80 81 1.352056 GAGGTCGCCGCTATTTTGC 59.648 57.895 0.00 0.00 0.00 3.68
81 82 1.083489 TTGAGGTCGCCGCTATTTTG 58.917 50.000 1.93 0.00 0.00 2.44
82 83 1.816074 TTTGAGGTCGCCGCTATTTT 58.184 45.000 1.93 0.00 0.00 1.82
83 84 1.816074 TTTTGAGGTCGCCGCTATTT 58.184 45.000 1.93 0.00 0.00 1.40
84 85 2.038387 ATTTTGAGGTCGCCGCTATT 57.962 45.000 1.93 0.00 0.00 1.73
85 86 2.902705 TATTTTGAGGTCGCCGCTAT 57.097 45.000 1.93 0.00 0.00 2.97
86 87 2.479837 CATATTTTGAGGTCGCCGCTA 58.520 47.619 1.93 0.00 0.00 4.26
87 88 1.299541 CATATTTTGAGGTCGCCGCT 58.700 50.000 1.93 0.00 0.00 5.52
88 89 0.317020 GCATATTTTGAGGTCGCCGC 60.317 55.000 0.00 0.00 0.00 6.53
89 90 1.299541 AGCATATTTTGAGGTCGCCG 58.700 50.000 0.00 0.00 0.00 6.46
90 91 5.390991 GCTAATAGCATATTTTGAGGTCGCC 60.391 44.000 7.49 0.00 41.89 5.54
91 92 5.622378 GCTAATAGCATATTTTGAGGTCGC 58.378 41.667 7.49 0.00 41.89 5.19
92 93 5.405571 ACGCTAATAGCATATTTTGAGGTCG 59.594 40.000 13.15 0.00 42.58 4.79
93 94 6.593978 CACGCTAATAGCATATTTTGAGGTC 58.406 40.000 13.15 0.00 42.58 3.85
94 95 5.049405 GCACGCTAATAGCATATTTTGAGGT 60.049 40.000 13.15 0.00 42.58 3.85
95 96 5.180117 AGCACGCTAATAGCATATTTTGAGG 59.820 40.000 13.15 0.00 42.58 3.86
96 97 6.233430 AGCACGCTAATAGCATATTTTGAG 57.767 37.500 13.15 0.00 42.58 3.02
97 98 7.905604 ATAGCACGCTAATAGCATATTTTGA 57.094 32.000 13.15 0.00 42.58 2.69
98 99 9.855361 GATATAGCACGCTAATAGCATATTTTG 57.145 33.333 13.15 0.00 42.58 2.44
99 100 9.599866 TGATATAGCACGCTAATAGCATATTTT 57.400 29.630 13.15 0.00 42.58 1.82
100 101 9.035607 GTGATATAGCACGCTAATAGCATATTT 57.964 33.333 13.15 0.91 42.58 1.40
101 102 8.581057 GTGATATAGCACGCTAATAGCATATT 57.419 34.615 13.15 0.00 42.58 1.28
127 128 0.778815 CGCTAATAGCACGCTGTAGC 59.221 55.000 19.15 19.15 42.58 3.58
128 129 2.031944 TCTCGCTAATAGCACGCTGTAG 60.032 50.000 13.15 4.71 42.58 2.74
129 130 1.944709 TCTCGCTAATAGCACGCTGTA 59.055 47.619 13.15 0.00 42.58 2.74
130 131 0.738975 TCTCGCTAATAGCACGCTGT 59.261 50.000 13.15 0.00 42.58 4.40
131 132 1.124462 GTCTCGCTAATAGCACGCTG 58.876 55.000 13.15 0.00 42.58 5.18
132 133 0.317103 CGTCTCGCTAATAGCACGCT 60.317 55.000 13.15 0.00 42.58 5.07
133 134 0.591741 ACGTCTCGCTAATAGCACGC 60.592 55.000 19.08 3.98 42.58 5.34
134 135 1.513178 CAACGTCTCGCTAATAGCACG 59.487 52.381 18.01 18.01 42.58 5.34
135 136 2.527100 ACAACGTCTCGCTAATAGCAC 58.473 47.619 13.15 2.25 42.58 4.40
136 137 2.933495 ACAACGTCTCGCTAATAGCA 57.067 45.000 13.15 0.00 42.58 3.49
137 138 3.481388 GTGTACAACGTCTCGCTAATAGC 59.519 47.826 1.41 1.41 38.02 2.97
138 139 4.729086 CAGTGTACAACGTCTCGCTAATAG 59.271 45.833 0.00 0.00 0.00 1.73
139 140 4.392754 TCAGTGTACAACGTCTCGCTAATA 59.607 41.667 0.00 0.00 0.00 0.98
140 141 3.189910 TCAGTGTACAACGTCTCGCTAAT 59.810 43.478 0.00 0.00 0.00 1.73
141 142 2.549329 TCAGTGTACAACGTCTCGCTAA 59.451 45.455 0.00 0.00 0.00 3.09
142 143 2.145536 TCAGTGTACAACGTCTCGCTA 58.854 47.619 0.00 0.00 0.00 4.26
143 144 0.949397 TCAGTGTACAACGTCTCGCT 59.051 50.000 0.00 0.00 0.00 4.93
144 145 1.978542 ATCAGTGTACAACGTCTCGC 58.021 50.000 0.00 0.00 0.00 5.03
145 146 7.909777 AAATATATCAGTGTACAACGTCTCG 57.090 36.000 0.00 0.00 0.00 4.04
146 147 8.903723 GCTAAATATATCAGTGTACAACGTCTC 58.096 37.037 0.00 0.00 0.00 3.36
147 148 7.590322 CGCTAAATATATCAGTGTACAACGTCT 59.410 37.037 0.00 0.00 0.00 4.18
148 149 7.588854 TCGCTAAATATATCAGTGTACAACGTC 59.411 37.037 0.00 0.00 0.00 4.34
149 150 7.420002 TCGCTAAATATATCAGTGTACAACGT 58.580 34.615 0.00 0.00 0.00 3.99
150 151 7.801783 TCTCGCTAAATATATCAGTGTACAACG 59.198 37.037 0.00 0.00 0.00 4.10
151 152 8.903723 GTCTCGCTAAATATATCAGTGTACAAC 58.096 37.037 0.00 0.00 0.00 3.32
152 153 8.626526 TGTCTCGCTAAATATATCAGTGTACAA 58.373 33.333 0.00 0.00 0.00 2.41
153 154 8.161699 TGTCTCGCTAAATATATCAGTGTACA 57.838 34.615 0.00 0.00 0.00 2.90
154 155 9.627395 ATTGTCTCGCTAAATATATCAGTGTAC 57.373 33.333 7.40 0.00 0.00 2.90
156 157 9.197694 GAATTGTCTCGCTAAATATATCAGTGT 57.802 33.333 7.40 0.00 0.00 3.55
157 158 9.416794 AGAATTGTCTCGCTAAATATATCAGTG 57.583 33.333 0.00 0.00 0.00 3.66
158 159 9.988815 AAGAATTGTCTCGCTAAATATATCAGT 57.011 29.630 0.00 0.00 30.70 3.41
160 161 9.981114 TGAAGAATTGTCTCGCTAAATATATCA 57.019 29.630 0.00 0.00 30.70 2.15
164 165 8.916654 CGTATGAAGAATTGTCTCGCTAAATAT 58.083 33.333 0.00 0.00 30.70 1.28
165 166 7.096189 GCGTATGAAGAATTGTCTCGCTAAATA 60.096 37.037 0.00 0.00 38.46 1.40
166 167 6.292381 GCGTATGAAGAATTGTCTCGCTAAAT 60.292 38.462 0.00 0.00 38.46 1.40
167 168 5.005394 GCGTATGAAGAATTGTCTCGCTAAA 59.995 40.000 0.00 0.00 38.46 1.85
168 169 4.503007 GCGTATGAAGAATTGTCTCGCTAA 59.497 41.667 0.00 0.00 38.46 3.09
169 170 4.042398 GCGTATGAAGAATTGTCTCGCTA 58.958 43.478 0.00 0.00 38.46 4.26
170 171 2.860735 GCGTATGAAGAATTGTCTCGCT 59.139 45.455 0.00 0.00 38.46 4.93
171 172 2.860735 AGCGTATGAAGAATTGTCTCGC 59.139 45.455 0.00 0.00 41.11 5.03
172 173 6.032985 GCTATAGCGTATGAAGAATTGTCTCG 59.967 42.308 9.40 0.00 30.70 4.04
173 174 7.271936 GCTATAGCGTATGAAGAATTGTCTC 57.728 40.000 9.40 0.00 30.70 3.36
214 215 4.595350 TGAATGATTCGTGGATATACCCCA 59.405 41.667 0.18 0.00 38.00 4.96
215 216 4.935808 GTGAATGATTCGTGGATATACCCC 59.064 45.833 0.18 0.00 38.00 4.95
230 231 4.283722 GGGAGGGATAAGTACGTGAATGAT 59.716 45.833 0.00 0.00 0.00 2.45
238 239 0.680061 GCCTGGGAGGGATAAGTACG 59.320 60.000 0.00 0.00 35.37 3.67
242 243 0.106894 GTTCGCCTGGGAGGGATAAG 59.893 60.000 0.00 0.00 35.37 1.73
250 251 2.361104 GCAATGGTTCGCCTGGGA 60.361 61.111 0.00 0.00 38.36 4.37
278 279 4.966787 GGCACTTTCCCCGCCACA 62.967 66.667 0.00 0.00 45.52 4.17
297 298 5.957798 TCCATTCACTTTGCATGAATCTTC 58.042 37.500 10.40 0.00 43.39 2.87
305 306 2.181125 TGCCATCCATTCACTTTGCAT 58.819 42.857 0.00 0.00 0.00 3.96
321 322 2.032634 GCGAACGTCCTTGATGCCA 61.033 57.895 0.00 0.00 0.00 4.92
325 326 1.079127 CCCAGCGAACGTCCTTGAT 60.079 57.895 0.00 0.00 0.00 2.57
327 328 0.882927 TTTCCCAGCGAACGTCCTTG 60.883 55.000 0.00 0.00 0.00 3.61
337 338 4.000331 AGATATGAGACATTTCCCAGCG 58.000 45.455 0.00 0.00 0.00 5.18
359 360 3.555956 GGAAATCATATCTGACGCACGTT 59.444 43.478 0.00 0.00 33.22 3.99
362 363 3.123804 ACGGAAATCATATCTGACGCAC 58.876 45.455 0.00 0.00 33.22 5.34
396 397 2.557056 GGAAAAGCTTAGGTGTTGGACC 59.443 50.000 0.00 0.00 46.58 4.46
399 400 3.503748 CAGAGGAAAAGCTTAGGTGTTGG 59.496 47.826 0.00 0.00 0.00 3.77
411 412 4.279659 GTGCAACGTAAACAGAGGAAAAG 58.720 43.478 0.00 0.00 0.00 2.27
436 437 1.267574 ATCGGACTGGTGAGCCACAT 61.268 55.000 7.49 0.00 40.46 3.21
442 443 2.159085 GGGTTAAGATCGGACTGGTGAG 60.159 54.545 0.00 0.00 0.00 3.51
471 485 1.821241 CGATTCGATCGCCGTTGCAT 61.821 55.000 11.09 0.00 46.55 3.96
504 518 4.171234 TGAGGGAAGGTTCTTCTTCATCT 58.829 43.478 7.47 3.97 43.52 2.90
505 519 4.559862 TGAGGGAAGGTTCTTCTTCATC 57.440 45.455 7.47 5.06 43.52 2.92
506 520 5.324832 TTTGAGGGAAGGTTCTTCTTCAT 57.675 39.130 7.47 0.00 43.52 2.57
507 521 4.788925 TTTGAGGGAAGGTTCTTCTTCA 57.211 40.909 7.47 8.66 43.52 3.02
533 547 6.306987 TGGCTAGGTTCTTCTTCATCTTTTT 58.693 36.000 0.00 0.00 0.00 1.94
534 548 5.880901 TGGCTAGGTTCTTCTTCATCTTTT 58.119 37.500 0.00 0.00 0.00 2.27
535 549 5.505181 TGGCTAGGTTCTTCTTCATCTTT 57.495 39.130 0.00 0.00 0.00 2.52
536 550 5.707066 ATGGCTAGGTTCTTCTTCATCTT 57.293 39.130 0.00 0.00 0.00 2.40
581 595 2.016604 GCGTCATGCCTGGTTTGGATA 61.017 52.381 0.00 0.00 37.76 2.59
632 658 2.476126 TTTCGTATTTCCCCGCTTCA 57.524 45.000 0.00 0.00 0.00 3.02
652 1022 6.695278 CGCTTATCTCTTTGTTGTTTCCAAAA 59.305 34.615 0.00 0.00 31.86 2.44
776 1165 6.322491 GGCGATTAATTACCTGCCAAATATC 58.678 40.000 13.48 0.00 42.03 1.63
778 1167 5.699097 GGCGATTAATTACCTGCCAAATA 57.301 39.130 13.48 0.00 42.03 1.40
947 1374 6.318900 GCTTCCAATGCTAAAACTGTACCTAT 59.681 38.462 0.00 0.00 0.00 2.57
1008 1439 4.133078 GTTCTGGGACATCATTGAGATCC 58.867 47.826 9.53 9.53 38.20 3.36
1125 1568 4.295119 AACGACTTCACGGCGGCT 62.295 61.111 13.24 0.00 37.61 5.52
1344 1787 0.108585 GCACCTCTTTGTCCACCTGA 59.891 55.000 0.00 0.00 0.00 3.86
1529 1972 2.161609 GTGAAAGGTGGAAGCATTACCG 59.838 50.000 0.00 0.00 39.46 4.02
1570 2013 3.760684 AGACCAAATTTCTGAGATGGTGC 59.239 43.478 10.00 3.14 44.12 5.01
1587 2036 3.940209 AACGTAACGGAACATAGACCA 57.060 42.857 0.00 0.00 0.00 4.02
1588 2037 4.236935 TGAAACGTAACGGAACATAGACC 58.763 43.478 0.00 0.00 0.00 3.85
1725 2184 4.454847 GCTTAGGGGTACAAGTTTTCTCAC 59.545 45.833 0.00 0.00 0.00 3.51
1727 2186 4.648651 TGCTTAGGGGTACAAGTTTTCTC 58.351 43.478 0.00 0.00 0.00 2.87
1728 2187 4.717279 TGCTTAGGGGTACAAGTTTTCT 57.283 40.909 0.00 0.00 0.00 2.52
1729 2188 7.457024 TTTATGCTTAGGGGTACAAGTTTTC 57.543 36.000 0.00 0.00 0.00 2.29
1730 2189 7.842887 TTTTATGCTTAGGGGTACAAGTTTT 57.157 32.000 0.00 0.00 0.00 2.43
1731 2190 8.430573 AATTTTATGCTTAGGGGTACAAGTTT 57.569 30.769 0.00 0.00 0.00 2.66
1777 2236 2.420022 CCCTTCTTTGATGCCTACAACG 59.580 50.000 0.00 0.00 0.00 4.10
1913 2443 2.983229 AGCTTGCATGACCTAGTTCAG 58.017 47.619 3.33 0.00 0.00 3.02
2011 2560 0.534412 AGGAGAAGTGTGGATCTGCG 59.466 55.000 0.00 0.00 38.83 5.18
2020 2569 4.421131 AGACAGGTAATGAGGAGAAGTGT 58.579 43.478 0.00 0.00 0.00 3.55
2021 2570 4.464244 TGAGACAGGTAATGAGGAGAAGTG 59.536 45.833 0.00 0.00 0.00 3.16
2022 2571 4.678256 TGAGACAGGTAATGAGGAGAAGT 58.322 43.478 0.00 0.00 0.00 3.01
2023 2572 5.667539 TTGAGACAGGTAATGAGGAGAAG 57.332 43.478 0.00 0.00 0.00 2.85
2024 2573 6.433847 TTTTGAGACAGGTAATGAGGAGAA 57.566 37.500 0.00 0.00 0.00 2.87
2025 2574 6.433847 TTTTTGAGACAGGTAATGAGGAGA 57.566 37.500 0.00 0.00 0.00 3.71
2091 2640 4.765339 AGTTCTTTAATGGGAAAAGTCGGG 59.235 41.667 0.00 0.00 35.79 5.14
2121 2671 7.801716 AACAAATCACAGCTAGAACAAGTAA 57.198 32.000 0.00 0.00 0.00 2.24
2250 2815 0.244721 GAAATGTTGGTCAGGCAGCC 59.755 55.000 1.84 1.84 0.00 4.85
2347 2912 2.939640 GCCGTAAAAGGAGAAGATGCCA 60.940 50.000 0.00 0.00 0.00 4.92
2351 2916 5.422650 AGAACTAGCCGTAAAAGGAGAAGAT 59.577 40.000 0.00 0.00 0.00 2.40
2386 2958 0.040646 TCATCCACCACTCTACCGGT 59.959 55.000 13.98 13.98 35.27 5.28
2411 2983 3.909430 CATCCATAATGCTTGATGCCAC 58.091 45.455 0.00 0.00 42.00 5.01
2548 3120 2.202690 CAGCCAACGCCATGCATG 60.203 61.111 20.19 20.19 34.57 4.06
2596 3168 5.851693 TGATTATAATGGAGGATGGTGAGGT 59.148 40.000 1.78 0.00 0.00 3.85
2728 3300 8.607441 TGTCTCAAATGCCTTATATATGTCAC 57.393 34.615 0.00 0.00 0.00 3.67
2898 3472 9.911980 CAATAATGACATATATGATGCGAGAAC 57.088 33.333 19.63 0.78 0.00 3.01
2965 3541 4.022849 ACACAAAAGCAGCTGGAAGTAATC 60.023 41.667 17.12 0.00 35.30 1.75
3305 3890 8.871686 ACAAAACATGAGAGTAAATTTTCCAC 57.128 30.769 0.00 0.00 0.00 4.02
3307 3892 9.313118 ACAACAAAACATGAGAGTAAATTTTCC 57.687 29.630 0.00 0.00 0.00 3.13
3329 3938 5.671742 AATTGCAGGCACAAATAAACAAC 57.328 34.783 0.00 0.00 32.27 3.32
3358 3967 3.208747 ACGTCACAGGTGAAGGAAAAT 57.791 42.857 17.36 0.00 42.14 1.82
3362 3972 3.823281 TTAAACGTCACAGGTGAAGGA 57.177 42.857 17.36 2.57 42.14 3.36
3364 3974 3.875134 ACCTTTAAACGTCACAGGTGAAG 59.125 43.478 12.72 12.72 41.85 3.02
3397 4007 8.181573 GTGGGAACTAAAACACACACATATATG 58.818 37.037 11.29 11.29 39.80 1.78
3412 4022 5.774690 AGCTTGAATTCATGTGGGAACTAAA 59.225 36.000 19.25 0.00 0.00 1.85
3414 4024 4.922206 AGCTTGAATTCATGTGGGAACTA 58.078 39.130 19.25 0.00 0.00 2.24
3441 4441 1.906574 ACACATGAGGATACGGGTGTT 59.093 47.619 0.00 0.00 46.39 3.32
3491 4492 9.969001 TTAGCATGGTAGAAAACTAGGTTTTAT 57.031 29.630 7.31 2.29 44.33 1.40
3493 4494 8.700439 TTTAGCATGGTAGAAAACTAGGTTTT 57.300 30.769 7.31 7.92 46.51 2.43
3536 4537 6.183361 CCCTAAACTTTGAGCTCCCTGTATAT 60.183 42.308 12.15 0.84 0.00 0.86
3537 4538 5.130477 CCCTAAACTTTGAGCTCCCTGTATA 59.870 44.000 12.15 0.00 0.00 1.47
3585 4598 1.664965 GCTTCACTGCGACGACCTT 60.665 57.895 0.00 0.00 0.00 3.50
3672 4685 1.005037 TCTCAATGAAGGCGCACGT 60.005 52.632 10.83 0.00 0.00 4.49
3686 4699 1.404717 GGCACGCTCAATCTTCTCTCA 60.405 52.381 0.00 0.00 0.00 3.27
3712 4731 0.679002 CTTGTCCCACTGCCTGATGG 60.679 60.000 0.00 0.00 35.59 3.51
3720 4739 0.954452 GTTGGCTTCTTGTCCCACTG 59.046 55.000 0.00 0.00 0.00 3.66
3958 4984 0.811281 GAAACTCCCCTTGGCAATCG 59.189 55.000 0.00 0.00 0.00 3.34
4090 5121 6.593770 GTCCAGAACCACAAAAAGTTGAAAAT 59.406 34.615 0.00 0.00 38.20 1.82
4095 5126 4.157656 TCAGTCCAGAACCACAAAAAGTTG 59.842 41.667 0.00 0.00 40.84 3.16
4138 5170 3.978672 ACTAAGTAACTGAAACACCCCCT 59.021 43.478 0.00 0.00 0.00 4.79
4164 5196 8.907222 ACTACTAGTAAACATACTCTAGCTCC 57.093 38.462 3.76 0.00 34.89 4.70
4193 5225 5.482580 ACTACTACATTATGGAATGGGGGA 58.517 41.667 0.00 0.00 45.83 4.81
4196 5228 8.375506 ACATGTACTACTACATTATGGAATGGG 58.624 37.037 0.00 0.00 45.83 4.00
4322 5354 5.486526 CCATAGATGCTCCCTAATGAGTTC 58.513 45.833 0.00 0.00 34.74 3.01
4374 5406 3.317993 ACGGTTCAGGGAAAAATCAACTG 59.682 43.478 0.00 0.00 0.00 3.16
4383 5415 2.158593 TGAATCCAACGGTTCAGGGAAA 60.159 45.455 2.93 0.00 32.25 3.13
4387 5419 1.890876 TGTGAATCCAACGGTTCAGG 58.109 50.000 0.00 0.00 35.22 3.86
4412 5444 8.023128 CAGGACAAATAGTTTCTATGTGGTTTG 58.977 37.037 10.47 5.54 0.00 2.93
4413 5445 7.942341 TCAGGACAAATAGTTTCTATGTGGTTT 59.058 33.333 10.47 0.00 0.00 3.27
4458 5490 6.818644 GCTGATACTGAACATAACTGAAAGGA 59.181 38.462 0.00 0.00 39.30 3.36
4471 5503 3.065925 GCTTCAATGGGCTGATACTGAAC 59.934 47.826 0.00 0.00 0.00 3.18
4476 5508 1.322442 GGGCTTCAATGGGCTGATAC 58.678 55.000 0.00 0.00 0.00 2.24
4479 5511 0.899717 GTTGGGCTTCAATGGGCTGA 60.900 55.000 0.00 0.00 37.73 4.26
4582 5615 8.353684 CCAGTTCTAGTCATTCGTATGTCTATT 58.646 37.037 8.84 0.00 33.78 1.73
4583 5616 7.502895 ACCAGTTCTAGTCATTCGTATGTCTAT 59.497 37.037 8.84 0.00 33.78 1.98
4584 5617 6.827251 ACCAGTTCTAGTCATTCGTATGTCTA 59.173 38.462 8.27 8.27 33.25 2.59
4585 5618 5.652891 ACCAGTTCTAGTCATTCGTATGTCT 59.347 40.000 6.95 6.95 35.00 3.41
4586 5619 5.892568 ACCAGTTCTAGTCATTCGTATGTC 58.107 41.667 1.75 0.00 33.34 3.06
4587 5620 5.916661 ACCAGTTCTAGTCATTCGTATGT 57.083 39.130 1.75 0.00 33.34 2.29
4588 5621 7.877003 AGATACCAGTTCTAGTCATTCGTATG 58.123 38.462 0.00 0.00 0.00 2.39
4589 5622 7.095144 CGAGATACCAGTTCTAGTCATTCGTAT 60.095 40.741 0.00 0.00 0.00 3.06
4590 5623 6.202379 CGAGATACCAGTTCTAGTCATTCGTA 59.798 42.308 0.00 0.00 0.00 3.43
4591 5624 5.007823 CGAGATACCAGTTCTAGTCATTCGT 59.992 44.000 0.00 0.00 0.00 3.85
4592 5625 5.007823 ACGAGATACCAGTTCTAGTCATTCG 59.992 44.000 0.00 0.00 0.00 3.34
4639 5672 9.411801 ACATAGTGATTGTTATATAGTGCTTCG 57.588 33.333 0.00 0.00 0.00 3.79
4734 5769 6.958767 AGCATAATGGTTAGACTAGTTTGGT 58.041 36.000 0.00 0.00 0.00 3.67
4735 5770 8.958119 TTAGCATAATGGTTAGACTAGTTTGG 57.042 34.615 0.00 0.00 0.00 3.28
4805 5840 9.219497 CGTGTTGCATAAATTGTTTTCAAAATT 57.781 25.926 0.00 0.00 43.39 1.82
4806 5841 7.375544 GCGTGTTGCATAAATTGTTTTCAAAAT 59.624 29.630 0.00 0.00 45.45 1.82
4807 5842 6.684555 GCGTGTTGCATAAATTGTTTTCAAAA 59.315 30.769 0.00 0.00 45.45 2.44
4808 5843 6.188175 GCGTGTTGCATAAATTGTTTTCAAA 58.812 32.000 0.00 0.00 45.45 2.69
4809 5844 5.732288 GCGTGTTGCATAAATTGTTTTCAA 58.268 33.333 0.00 0.00 45.45 2.69
4810 5845 5.321983 GCGTGTTGCATAAATTGTTTTCA 57.678 34.783 0.00 0.00 45.45 2.69
4824 5859 2.161410 TCCACATATCAAAGCGTGTTGC 59.839 45.455 0.00 0.00 46.98 4.17
4825 5860 4.418013 TTCCACATATCAAAGCGTGTTG 57.582 40.909 0.00 0.00 0.00 3.33
4826 5861 5.643379 AATTCCACATATCAAAGCGTGTT 57.357 34.783 0.00 0.00 0.00 3.32
4827 5862 6.183360 CCTTAATTCCACATATCAAAGCGTGT 60.183 38.462 0.00 0.00 0.00 4.49
4828 5863 6.183360 ACCTTAATTCCACATATCAAAGCGTG 60.183 38.462 0.00 0.00 0.00 5.34
4829 5864 5.885912 ACCTTAATTCCACATATCAAAGCGT 59.114 36.000 0.00 0.00 0.00 5.07
4830 5865 6.377327 ACCTTAATTCCACATATCAAAGCG 57.623 37.500 0.00 0.00 0.00 4.68
4831 5866 9.516314 GTTAACCTTAATTCCACATATCAAAGC 57.484 33.333 0.00 0.00 0.00 3.51
4833 5868 9.762381 AGGTTAACCTTAATTCCACATATCAAA 57.238 29.630 21.96 0.00 46.09 2.69
4837 5872 9.333724 CGTTAGGTTAACCTTAATTCCACATAT 57.666 33.333 31.47 5.52 46.09 1.78
4838 5873 8.538701 TCGTTAGGTTAACCTTAATTCCACATA 58.461 33.333 31.47 6.85 46.09 2.29
4839 5874 7.335171 GTCGTTAGGTTAACCTTAATTCCACAT 59.665 37.037 31.47 6.17 46.09 3.21
4840 5875 6.650390 GTCGTTAGGTTAACCTTAATTCCACA 59.350 38.462 31.47 8.17 46.09 4.17
4841 5876 6.092670 GGTCGTTAGGTTAACCTTAATTCCAC 59.907 42.308 31.47 17.55 46.09 4.02
4842 5877 6.013466 AGGTCGTTAGGTTAACCTTAATTCCA 60.013 38.462 31.47 9.72 46.09 3.53
4843 5878 6.314648 CAGGTCGTTAGGTTAACCTTAATTCC 59.685 42.308 31.47 24.69 46.09 3.01
4844 5879 6.875726 ACAGGTCGTTAGGTTAACCTTAATTC 59.124 38.462 31.47 18.22 46.09 2.17
4845 5880 6.772605 ACAGGTCGTTAGGTTAACCTTAATT 58.227 36.000 31.47 10.48 46.09 1.40
4846 5881 6.364568 ACAGGTCGTTAGGTTAACCTTAAT 57.635 37.500 31.47 10.87 46.09 1.40
4847 5882 5.806654 ACAGGTCGTTAGGTTAACCTTAA 57.193 39.130 31.47 19.35 46.09 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.