Multiple sequence alignment - TraesCS3D01G152100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G152100 chr3D 100.000 2655 0 0 1 2655 116333365 116336019 0.000000e+00 4903.0
1 TraesCS3D01G152100 chr3D 86.842 76 10 0 2341 2416 470498575 470498650 4.710000e-13 86.1
2 TraesCS3D01G152100 chr3B 94.059 1414 58 8 866 2274 169921582 169922974 0.000000e+00 2122.0
3 TraesCS3D01G152100 chr4D 98.851 870 10 0 1 870 65841394 65840525 0.000000e+00 1552.0
4 TraesCS3D01G152100 chr4D 98.391 870 14 0 1 870 380293081 380292212 0.000000e+00 1530.0
5 TraesCS3D01G152100 chr7D 98.276 870 15 0 1 870 162838761 162839630 0.000000e+00 1524.0
6 TraesCS3D01G152100 chr7D 96.897 870 9 1 1 870 75311849 75310998 0.000000e+00 1441.0
7 TraesCS3D01G152100 chr7D 85.421 487 47 14 1877 2340 110253588 110253103 3.970000e-133 484.0
8 TraesCS3D01G152100 chr7D 93.243 74 4 1 2363 2436 213382004 213382076 1.000000e-19 108.0
9 TraesCS3D01G152100 chr2B 92.557 833 62 0 38 870 727230153 727229321 0.000000e+00 1195.0
10 TraesCS3D01G152100 chr2B 92.308 65 5 0 2361 2425 243578146 243578210 2.810000e-15 93.5
11 TraesCS3D01G152100 chr2B 92.063 63 5 0 1288 1350 744189533 744189471 3.640000e-14 89.8
12 TraesCS3D01G152100 chr2B 87.671 73 8 1 2365 2437 683819193 683819122 1.690000e-12 84.2
13 TraesCS3D01G152100 chr6A 90.548 857 80 1 13 869 612305577 612306432 0.000000e+00 1133.0
14 TraesCS3D01G152100 chr5A 85.579 846 122 0 24 869 356348012 356347167 0.000000e+00 887.0
15 TraesCS3D01G152100 chr5A 88.139 489 53 5 25 511 9395713 9396198 6.370000e-161 577.0
16 TraesCS3D01G152100 chr1D 86.066 488 43 14 1877 2340 454850886 454850400 3.950000e-138 501.0
17 TraesCS3D01G152100 chr1D 91.633 251 19 2 866 1115 323116569 323116320 1.960000e-91 346.0
18 TraesCS3D01G152100 chr1D 91.339 254 20 2 866 1118 323499352 323499100 1.960000e-91 346.0
19 TraesCS3D01G152100 chr1D 90.551 254 22 2 866 1118 322783852 322783600 4.230000e-88 335.0
20 TraesCS3D01G152100 chr1D 90.157 254 23 2 866 1118 322996594 322996342 1.970000e-86 329.0
21 TraesCS3D01G152100 chr1D 89.764 254 24 2 866 1118 322759116 322758864 9.170000e-85 324.0
22 TraesCS3D01G152100 chr1D 86.667 75 9 1 2360 2434 365969010 365968937 6.090000e-12 82.4
23 TraesCS3D01G152100 chr1B 76.293 793 175 12 74 860 577646059 577646844 6.840000e-111 411.0
24 TraesCS3D01G152100 chr1B 92.490 253 17 2 866 1118 435369056 435368806 6.990000e-96 361.0
25 TraesCS3D01G152100 chr1A 92.520 254 17 2 866 1118 32801349 32801097 1.940000e-96 363.0
26 TraesCS3D01G152100 chr1A 90.837 251 18 4 866 1115 398892908 398892662 5.480000e-87 331.0
27 TraesCS3D01G152100 chr1A 92.208 77 5 1 1657 1732 398843838 398843762 1.000000e-19 108.0
28 TraesCS3D01G152100 chr1A 91.892 74 4 1 1650 1723 423461497 423461426 4.680000e-18 102.0
29 TraesCS3D01G152100 chr1A 91.892 74 4 1 1650 1723 423514459 423514388 4.680000e-18 102.0
30 TraesCS3D01G152100 chr1A 90.476 63 4 2 1289 1350 424081184 424081245 6.090000e-12 82.4
31 TraesCS3D01G152100 chr2D 89.925 268 23 2 1876 2139 39425079 39424812 2.530000e-90 342.0
32 TraesCS3D01G152100 chr2D 80.743 296 37 10 1976 2258 567650034 567650322 2.070000e-51 213.0
33 TraesCS3D01G152100 chr2D 94.030 134 8 0 2137 2270 39424464 39424331 1.250000e-48 204.0
34 TraesCS3D01G152100 chr7B 84.163 221 27 5 2021 2234 710502614 710502833 9.630000e-50 207.0
35 TraesCS3D01G152100 chr7B 84.706 85 13 0 2345 2429 340585669 340585753 4.710000e-13 86.1
36 TraesCS3D01G152100 chr5B 91.892 74 6 0 2360 2433 460682260 460682187 1.300000e-18 104.0
37 TraesCS3D01G152100 chr3A 91.429 70 5 1 2356 2425 75031765 75031833 7.820000e-16 95.3
38 TraesCS3D01G152100 chr4A 82.979 94 8 5 2357 2443 598120436 598120528 7.880000e-11 78.7
39 TraesCS3D01G152100 chr6D 100.000 38 0 0 1 38 450001017 450000980 1.320000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G152100 chr3D 116333365 116336019 2654 False 4903 4903 100.0000 1 2655 1 chr3D.!!$F1 2654
1 TraesCS3D01G152100 chr3B 169921582 169922974 1392 False 2122 2122 94.0590 866 2274 1 chr3B.!!$F1 1408
2 TraesCS3D01G152100 chr4D 65840525 65841394 869 True 1552 1552 98.8510 1 870 1 chr4D.!!$R1 869
3 TraesCS3D01G152100 chr4D 380292212 380293081 869 True 1530 1530 98.3910 1 870 1 chr4D.!!$R2 869
4 TraesCS3D01G152100 chr7D 162838761 162839630 869 False 1524 1524 98.2760 1 870 1 chr7D.!!$F1 869
5 TraesCS3D01G152100 chr7D 75310998 75311849 851 True 1441 1441 96.8970 1 870 1 chr7D.!!$R1 869
6 TraesCS3D01G152100 chr2B 727229321 727230153 832 True 1195 1195 92.5570 38 870 1 chr2B.!!$R2 832
7 TraesCS3D01G152100 chr6A 612305577 612306432 855 False 1133 1133 90.5480 13 869 1 chr6A.!!$F1 856
8 TraesCS3D01G152100 chr5A 356347167 356348012 845 True 887 887 85.5790 24 869 1 chr5A.!!$R1 845
9 TraesCS3D01G152100 chr1B 577646059 577646844 785 False 411 411 76.2930 74 860 1 chr1B.!!$F1 786
10 TraesCS3D01G152100 chr2D 39424331 39425079 748 True 273 342 91.9775 1876 2270 2 chr2D.!!$R1 394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 233 1.88556 TTTTCCGCATCGAGGACAAA 58.114 45.0 0.0 0.0 37.53 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 1974 0.040514 CAACGCTTCGCCAAACATCA 60.041 50.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 233 1.885560 TTTTCCGCATCGAGGACAAA 58.114 45.000 0.00 0.00 37.53 2.83
276 277 6.049149 GTGTATCTTAGTTTATGCTCAGCCA 58.951 40.000 0.00 0.00 0.00 4.75
573 574 2.829914 GATCCTGCATGGCCGCAA 60.830 61.111 6.77 0.00 42.45 4.85
888 889 7.603404 TCCAAATGGCAAAAATTGATACTCAAG 59.397 33.333 0.00 0.00 35.94 3.02
977 978 5.239525 CACAACCAAAAGGACTTAGGAGAAG 59.760 44.000 9.58 0.00 0.00 2.85
1015 1017 1.270147 ACGTTATGGCTCTAATCCGGC 60.270 52.381 0.00 0.00 0.00 6.13
1027 1029 2.851263 AATCCGGCTCAACACAAGTA 57.149 45.000 0.00 0.00 0.00 2.24
1118 1120 9.555727 GACCATAGGTACATTTCTATTTAGCAA 57.444 33.333 0.00 0.00 35.25 3.91
1161 1163 3.341823 CGTACCTAGTACAGTGAGGTGT 58.658 50.000 15.30 0.00 43.55 4.16
1224 1227 1.447317 CCGCGCTCATGCCCTTATTT 61.447 55.000 5.56 0.00 35.36 1.40
1225 1228 0.040958 CGCGCTCATGCCCTTATTTC 60.041 55.000 5.56 0.00 35.36 2.17
1226 1229 1.024271 GCGCTCATGCCCTTATTTCA 58.976 50.000 0.00 0.00 35.36 2.69
1227 1230 1.610522 GCGCTCATGCCCTTATTTCAT 59.389 47.619 0.00 0.00 35.36 2.57
1228 1231 2.813754 GCGCTCATGCCCTTATTTCATA 59.186 45.455 0.00 0.00 35.36 2.15
1229 1232 3.253188 GCGCTCATGCCCTTATTTCATAA 59.747 43.478 0.00 0.00 35.36 1.90
1230 1233 4.082571 GCGCTCATGCCCTTATTTCATAAT 60.083 41.667 0.00 0.00 35.36 1.28
1268 1271 5.213675 CCTCGTAGTCCTTTAAATCTAGCG 58.786 45.833 0.00 1.36 0.00 4.26
1272 1275 7.934457 TCGTAGTCCTTTAAATCTAGCGTAAT 58.066 34.615 0.00 0.00 0.00 1.89
1316 1319 7.479980 TCTAGTGTTATTTAACAATGGCATGC 58.520 34.615 9.90 9.90 46.54 4.06
1345 1348 3.958147 AGAGGTGTTTTCCCGTTGATTTT 59.042 39.130 0.00 0.00 0.00 1.82
1378 1381 4.653868 ACCACAATAACAATTGGGTCGTA 58.346 39.130 10.83 0.00 33.08 3.43
1388 1391 6.474140 ACAATTGGGTCGTAGTATGTATGA 57.526 37.500 10.83 0.00 0.00 2.15
1407 1410 7.116075 TGTATGATTTTGGTAGTACTGGCAAT 58.884 34.615 5.39 0.00 0.00 3.56
1428 1431 8.180267 GGCAATGACATGAAATATATCAGTAGC 58.820 37.037 0.00 0.00 31.76 3.58
1451 1454 2.554032 GTTCTGCCTGTGTTTGCATAGT 59.446 45.455 0.00 0.00 36.79 2.12
1488 1491 8.858003 TTCATAGAATTCTGAGCTTAACTACG 57.142 34.615 18.47 0.00 0.00 3.51
1545 1548 0.535553 GTTTGCGGTGGGAAGTACCA 60.536 55.000 0.00 0.00 41.20 3.25
1586 1589 4.830826 ATCGATGCTAAGTCGTGTGATA 57.169 40.909 0.00 0.00 39.91 2.15
1587 1590 3.948851 TCGATGCTAAGTCGTGTGATAC 58.051 45.455 0.00 0.00 39.91 2.24
1590 1593 4.024302 CGATGCTAAGTCGTGTGATACCTA 60.024 45.833 0.00 0.00 34.56 3.08
1702 1705 9.981114 AAAGTGTGGAAATAAAGATTTACTTGG 57.019 29.630 0.00 0.00 36.88 3.61
1713 1716 9.920946 ATAAAGATTTACTTGGGAGCATTAAGA 57.079 29.630 0.00 0.00 38.98 2.10
1723 1726 7.442062 ACTTGGGAGCATTAAGAATTGTTTTTG 59.558 33.333 0.00 0.00 0.00 2.44
1821 1824 4.202121 CCAACGCTCAGGCTATTAAGAGTA 60.202 45.833 0.00 0.00 36.09 2.59
1835 1838 9.109393 GCTATTAAGAGTAGATCAGATCGAGAT 57.891 37.037 4.67 3.73 0.00 2.75
1944 1951 1.681538 AGTACATCGGCTCGTCATCT 58.318 50.000 0.00 0.00 0.00 2.90
1976 1983 1.875963 GACCACCGCTGATGTTTGG 59.124 57.895 0.00 0.00 0.00 3.28
1977 1984 2.200170 GACCACCGCTGATGTTTGGC 62.200 60.000 0.00 0.00 0.00 4.52
2013 2020 3.430895 GTCCGAGCTTTCGAACAATTACA 59.569 43.478 0.00 0.00 34.64 2.41
2015 2022 3.678072 CCGAGCTTTCGAACAATTACAGA 59.322 43.478 0.00 0.00 34.64 3.41
2109 2119 6.092670 AGTTCAACACGATACAAGATGATTGG 59.907 38.462 0.00 0.00 0.00 3.16
2129 2139 3.898123 TGGGAGAGATTAGTAGATGGTGC 59.102 47.826 0.00 0.00 0.00 5.01
2270 2630 1.908793 ATAGGATGGGAGGTCGGCG 60.909 63.158 0.00 0.00 0.00 6.46
2278 2638 4.587189 GAGGTCGGCGGCGCTAAT 62.587 66.667 32.30 13.37 0.00 1.73
2279 2639 4.587189 AGGTCGGCGGCGCTAATC 62.587 66.667 32.30 19.61 0.00 1.75
2280 2640 4.884257 GGTCGGCGGCGCTAATCA 62.884 66.667 32.30 5.07 0.00 2.57
2281 2641 3.627218 GTCGGCGGCGCTAATCAC 61.627 66.667 32.30 14.84 0.00 3.06
2285 2645 4.884257 GCGGCGCTAATCACGGGA 62.884 66.667 26.86 0.00 0.00 5.14
2286 2646 2.658593 CGGCGCTAATCACGGGAG 60.659 66.667 7.64 0.00 0.00 4.30
2287 2647 2.967615 GGCGCTAATCACGGGAGC 60.968 66.667 7.64 0.00 0.00 4.70
2288 2648 2.202878 GCGCTAATCACGGGAGCA 60.203 61.111 0.00 0.00 35.91 4.26
2289 2649 1.595382 GCGCTAATCACGGGAGCAT 60.595 57.895 0.00 0.00 35.91 3.79
2290 2650 1.560860 GCGCTAATCACGGGAGCATC 61.561 60.000 0.00 0.00 35.91 3.91
2291 2651 0.032678 CGCTAATCACGGGAGCATCT 59.967 55.000 0.00 0.00 35.91 2.90
2292 2652 1.789506 GCTAATCACGGGAGCATCTC 58.210 55.000 0.00 0.00 36.20 2.75
2293 2653 1.069204 GCTAATCACGGGAGCATCTCA 59.931 52.381 0.00 0.00 32.47 3.27
2294 2654 2.865670 GCTAATCACGGGAGCATCTCAG 60.866 54.545 0.00 0.00 32.47 3.35
2295 2655 0.467384 AATCACGGGAGCATCTCAGG 59.533 55.000 0.00 0.00 32.47 3.86
2296 2656 0.397675 ATCACGGGAGCATCTCAGGA 60.398 55.000 0.00 0.00 32.47 3.86
2297 2657 1.039785 TCACGGGAGCATCTCAGGAG 61.040 60.000 0.00 0.00 32.47 3.69
2298 2658 1.039785 CACGGGAGCATCTCAGGAGA 61.040 60.000 0.81 0.81 32.47 3.71
2299 2659 1.040339 ACGGGAGCATCTCAGGAGAC 61.040 60.000 0.22 0.00 40.75 3.36
2300 2660 1.039785 CGGGAGCATCTCAGGAGACA 61.040 60.000 0.22 0.00 40.75 3.41
2301 2661 0.752054 GGGAGCATCTCAGGAGACAG 59.248 60.000 0.22 0.00 40.75 3.51
2302 2662 1.687682 GGGAGCATCTCAGGAGACAGA 60.688 57.143 0.22 0.00 40.75 3.41
2303 2663 2.106566 GGAGCATCTCAGGAGACAGAA 58.893 52.381 0.22 0.00 40.75 3.02
2304 2664 2.101249 GGAGCATCTCAGGAGACAGAAG 59.899 54.545 0.22 0.00 40.75 2.85
2305 2665 2.101249 GAGCATCTCAGGAGACAGAAGG 59.899 54.545 0.22 0.00 40.75 3.46
2306 2666 1.473080 GCATCTCAGGAGACAGAAGGC 60.473 57.143 0.22 0.00 40.75 4.35
2307 2667 1.138661 CATCTCAGGAGACAGAAGGCC 59.861 57.143 0.22 0.00 40.75 5.19
2308 2668 0.115152 TCTCAGGAGACAGAAGGCCA 59.885 55.000 5.01 0.00 31.41 5.36
2309 2669 0.979665 CTCAGGAGACAGAAGGCCAA 59.020 55.000 5.01 0.00 0.00 4.52
2310 2670 1.558756 CTCAGGAGACAGAAGGCCAAT 59.441 52.381 5.01 0.00 0.00 3.16
2311 2671 1.556911 TCAGGAGACAGAAGGCCAATC 59.443 52.381 5.01 2.29 0.00 2.67
2312 2672 0.539051 AGGAGACAGAAGGCCAATCG 59.461 55.000 5.01 2.36 0.00 3.34
2313 2673 1.092345 GGAGACAGAAGGCCAATCGC 61.092 60.000 5.01 0.00 0.00 4.58
2314 2674 0.107945 GAGACAGAAGGCCAATCGCT 60.108 55.000 5.01 3.55 37.74 4.93
2315 2675 0.107945 AGACAGAAGGCCAATCGCTC 60.108 55.000 5.01 3.16 37.74 5.03
2316 2676 0.391661 GACAGAAGGCCAATCGCTCA 60.392 55.000 5.01 0.00 37.74 4.26
2317 2677 0.036732 ACAGAAGGCCAATCGCTCAA 59.963 50.000 5.01 0.00 37.74 3.02
2318 2678 1.340405 ACAGAAGGCCAATCGCTCAAT 60.340 47.619 5.01 0.00 37.74 2.57
2319 2679 1.332997 CAGAAGGCCAATCGCTCAATC 59.667 52.381 5.01 0.00 37.74 2.67
2320 2680 1.211457 AGAAGGCCAATCGCTCAATCT 59.789 47.619 5.01 0.00 37.74 2.40
2321 2681 2.019984 GAAGGCCAATCGCTCAATCTT 58.980 47.619 5.01 0.00 37.74 2.40
2322 2682 2.134789 AGGCCAATCGCTCAATCTTT 57.865 45.000 5.01 0.00 37.74 2.52
2323 2683 2.019984 AGGCCAATCGCTCAATCTTTC 58.980 47.619 5.01 0.00 37.74 2.62
2324 2684 1.066152 GGCCAATCGCTCAATCTTTCC 59.934 52.381 0.00 0.00 37.74 3.13
2325 2685 2.019984 GCCAATCGCTCAATCTTTCCT 58.980 47.619 0.00 0.00 0.00 3.36
2326 2686 2.424956 GCCAATCGCTCAATCTTTCCTT 59.575 45.455 0.00 0.00 0.00 3.36
2327 2687 3.627577 GCCAATCGCTCAATCTTTCCTTA 59.372 43.478 0.00 0.00 0.00 2.69
2328 2688 4.496507 GCCAATCGCTCAATCTTTCCTTAC 60.497 45.833 0.00 0.00 0.00 2.34
2329 2689 4.878397 CCAATCGCTCAATCTTTCCTTACT 59.122 41.667 0.00 0.00 0.00 2.24
2330 2690 6.049149 CCAATCGCTCAATCTTTCCTTACTA 58.951 40.000 0.00 0.00 0.00 1.82
2331 2691 6.018669 CCAATCGCTCAATCTTTCCTTACTAC 60.019 42.308 0.00 0.00 0.00 2.73
2332 2692 5.916661 TCGCTCAATCTTTCCTTACTACT 57.083 39.130 0.00 0.00 0.00 2.57
2333 2693 7.584122 ATCGCTCAATCTTTCCTTACTACTA 57.416 36.000 0.00 0.00 0.00 1.82
2334 2694 7.584122 TCGCTCAATCTTTCCTTACTACTAT 57.416 36.000 0.00 0.00 0.00 2.12
2335 2695 7.649973 TCGCTCAATCTTTCCTTACTACTATC 58.350 38.462 0.00 0.00 0.00 2.08
2336 2696 7.502895 TCGCTCAATCTTTCCTTACTACTATCT 59.497 37.037 0.00 0.00 0.00 1.98
2337 2697 8.784994 CGCTCAATCTTTCCTTACTACTATCTA 58.215 37.037 0.00 0.00 0.00 1.98
2344 2704 9.282569 TCTTTCCTTACTACTATCTAATCCGAC 57.717 37.037 0.00 0.00 0.00 4.79
2345 2705 7.992754 TTCCTTACTACTATCTAATCCGACC 57.007 40.000 0.00 0.00 0.00 4.79
2346 2706 6.479884 TCCTTACTACTATCTAATCCGACCC 58.520 44.000 0.00 0.00 0.00 4.46
2347 2707 5.353678 CCTTACTACTATCTAATCCGACCCG 59.646 48.000 0.00 0.00 0.00 5.28
2348 2708 4.630644 ACTACTATCTAATCCGACCCGA 57.369 45.455 0.00 0.00 0.00 5.14
2349 2709 4.978099 ACTACTATCTAATCCGACCCGAA 58.022 43.478 0.00 0.00 0.00 4.30
2350 2710 5.380043 ACTACTATCTAATCCGACCCGAAA 58.620 41.667 0.00 0.00 0.00 3.46
2351 2711 5.829924 ACTACTATCTAATCCGACCCGAAAA 59.170 40.000 0.00 0.00 0.00 2.29
2352 2712 5.603170 ACTATCTAATCCGACCCGAAAAA 57.397 39.130 0.00 0.00 0.00 1.94
2353 2713 5.598769 ACTATCTAATCCGACCCGAAAAAG 58.401 41.667 0.00 0.00 0.00 2.27
2354 2714 2.624636 TCTAATCCGACCCGAAAAAGC 58.375 47.619 0.00 0.00 0.00 3.51
2355 2715 2.027929 TCTAATCCGACCCGAAAAAGCA 60.028 45.455 0.00 0.00 0.00 3.91
2356 2716 1.611519 AATCCGACCCGAAAAAGCAA 58.388 45.000 0.00 0.00 0.00 3.91
2357 2717 1.834188 ATCCGACCCGAAAAAGCAAT 58.166 45.000 0.00 0.00 0.00 3.56
2358 2718 2.476126 TCCGACCCGAAAAAGCAATA 57.524 45.000 0.00 0.00 0.00 1.90
2359 2719 2.078392 TCCGACCCGAAAAAGCAATAC 58.922 47.619 0.00 0.00 0.00 1.89
2360 2720 1.131693 CCGACCCGAAAAAGCAATACC 59.868 52.381 0.00 0.00 0.00 2.73
2361 2721 1.131693 CGACCCGAAAAAGCAATACCC 59.868 52.381 0.00 0.00 0.00 3.69
2362 2722 1.131693 GACCCGAAAAAGCAATACCCG 59.868 52.381 0.00 0.00 0.00 5.28
2363 2723 1.271488 ACCCGAAAAAGCAATACCCGA 60.271 47.619 0.00 0.00 0.00 5.14
2364 2724 1.131693 CCCGAAAAAGCAATACCCGAC 59.868 52.381 0.00 0.00 0.00 4.79
2365 2725 1.131693 CCGAAAAAGCAATACCCGACC 59.868 52.381 0.00 0.00 0.00 4.79
2366 2726 1.131693 CGAAAAAGCAATACCCGACCC 59.868 52.381 0.00 0.00 0.00 4.46
2367 2727 1.131693 GAAAAAGCAATACCCGACCCG 59.868 52.381 0.00 0.00 0.00 5.28
2369 2729 3.692370 AAGCAATACCCGACCCGGC 62.692 63.158 0.00 0.00 46.86 6.13
2371 2731 4.557385 CAATACCCGACCCGGCCC 62.557 72.222 0.00 0.00 46.86 5.80
2405 2765 4.272245 CGGGGTCGGGTCTAGATT 57.728 61.111 0.00 0.00 0.00 2.40
2406 2766 2.512973 CGGGGTCGGGTCTAGATTT 58.487 57.895 0.00 0.00 0.00 2.17
2407 2767 0.388294 CGGGGTCGGGTCTAGATTTC 59.612 60.000 0.00 0.00 0.00 2.17
2408 2768 1.492764 GGGGTCGGGTCTAGATTTCA 58.507 55.000 0.00 0.00 0.00 2.69
2409 2769 1.835531 GGGGTCGGGTCTAGATTTCAA 59.164 52.381 0.00 0.00 0.00 2.69
2410 2770 2.158943 GGGGTCGGGTCTAGATTTCAAG 60.159 54.545 0.00 0.00 0.00 3.02
2411 2771 2.552031 GGTCGGGTCTAGATTTCAAGC 58.448 52.381 0.00 0.00 0.00 4.01
2412 2772 2.552031 GTCGGGTCTAGATTTCAAGCC 58.448 52.381 0.00 0.00 0.00 4.35
2413 2773 1.485066 TCGGGTCTAGATTTCAAGCCC 59.515 52.381 0.00 0.00 0.00 5.19
2414 2774 1.954927 GGGTCTAGATTTCAAGCCCG 58.045 55.000 0.00 0.00 0.00 6.13
2415 2775 1.485066 GGGTCTAGATTTCAAGCCCGA 59.515 52.381 0.00 0.00 0.00 5.14
2416 2776 2.104963 GGGTCTAGATTTCAAGCCCGAT 59.895 50.000 0.00 0.00 0.00 4.18
2417 2777 3.134458 GGTCTAGATTTCAAGCCCGATG 58.866 50.000 0.00 0.00 0.00 3.84
2418 2778 3.134458 GTCTAGATTTCAAGCCCGATGG 58.866 50.000 0.00 0.00 0.00 3.51
2419 2779 2.771943 TCTAGATTTCAAGCCCGATGGT 59.228 45.455 0.00 0.00 0.00 3.55
2420 2780 2.044123 AGATTTCAAGCCCGATGGTC 57.956 50.000 0.00 0.00 0.00 4.02
2421 2781 0.657840 GATTTCAAGCCCGATGGTCG 59.342 55.000 0.00 0.00 40.07 4.79
2431 2791 4.554036 GATGGTCGGGCTGGGCTC 62.554 72.222 0.00 0.00 0.00 4.70
2445 2805 3.780624 GGCTCGGCCTAGATTTCAA 57.219 52.632 8.81 0.00 46.69 2.69
2446 2806 1.587547 GGCTCGGCCTAGATTTCAAG 58.412 55.000 8.81 0.00 46.69 3.02
2447 2807 0.940833 GCTCGGCCTAGATTTCAAGC 59.059 55.000 8.81 0.00 0.00 4.01
2448 2808 1.474143 GCTCGGCCTAGATTTCAAGCT 60.474 52.381 8.81 0.00 0.00 3.74
2449 2809 2.208431 CTCGGCCTAGATTTCAAGCTG 58.792 52.381 0.00 0.00 0.00 4.24
2450 2810 1.831106 TCGGCCTAGATTTCAAGCTGA 59.169 47.619 0.00 0.00 36.53 4.26
2451 2811 2.236146 TCGGCCTAGATTTCAAGCTGAA 59.764 45.455 0.00 0.00 35.97 3.02
2461 2821 3.449322 TTCAAGCTGAAATAACGTCGC 57.551 42.857 0.00 0.00 32.71 5.19
2462 2822 2.683968 TCAAGCTGAAATAACGTCGCT 58.316 42.857 0.00 0.00 0.00 4.93
2463 2823 3.840468 TCAAGCTGAAATAACGTCGCTA 58.160 40.909 0.00 0.00 0.00 4.26
2464 2824 4.239304 TCAAGCTGAAATAACGTCGCTAA 58.761 39.130 0.00 0.00 0.00 3.09
2465 2825 4.868171 TCAAGCTGAAATAACGTCGCTAAT 59.132 37.500 0.00 0.00 0.00 1.73
2466 2826 5.350365 TCAAGCTGAAATAACGTCGCTAATT 59.650 36.000 0.00 0.00 0.00 1.40
2467 2827 6.532302 TCAAGCTGAAATAACGTCGCTAATTA 59.468 34.615 0.00 0.00 0.00 1.40
2468 2828 6.270096 AGCTGAAATAACGTCGCTAATTAC 57.730 37.500 0.00 0.00 0.00 1.89
2469 2829 5.233689 AGCTGAAATAACGTCGCTAATTACC 59.766 40.000 0.00 0.00 0.00 2.85
2470 2830 5.557703 GCTGAAATAACGTCGCTAATTACCC 60.558 44.000 0.00 0.00 0.00 3.69
2471 2831 5.417811 TGAAATAACGTCGCTAATTACCCA 58.582 37.500 0.00 0.00 0.00 4.51
2472 2832 6.050432 TGAAATAACGTCGCTAATTACCCAT 58.950 36.000 0.00 0.00 0.00 4.00
2473 2833 5.917541 AATAACGTCGCTAATTACCCATG 57.082 39.130 0.00 0.00 0.00 3.66
2474 2834 1.578583 ACGTCGCTAATTACCCATGC 58.421 50.000 0.00 0.00 0.00 4.06
2475 2835 1.134640 ACGTCGCTAATTACCCATGCA 60.135 47.619 0.00 0.00 0.00 3.96
2476 2836 1.526887 CGTCGCTAATTACCCATGCAG 59.473 52.381 0.00 0.00 0.00 4.41
2477 2837 2.801699 CGTCGCTAATTACCCATGCAGA 60.802 50.000 0.00 0.00 0.00 4.26
2478 2838 3.202906 GTCGCTAATTACCCATGCAGAA 58.797 45.455 0.00 0.00 0.00 3.02
2479 2839 3.248602 GTCGCTAATTACCCATGCAGAAG 59.751 47.826 0.00 0.00 0.00 2.85
2480 2840 2.549754 CGCTAATTACCCATGCAGAAGG 59.450 50.000 0.00 0.00 0.00 3.46
2485 2845 2.599597 CCCATGCAGAAGGGGAGG 59.400 66.667 12.64 0.00 45.08 4.30
2486 2846 2.599597 CCATGCAGAAGGGGAGGG 59.400 66.667 0.00 0.00 0.00 4.30
2487 2847 2.599597 CATGCAGAAGGGGAGGGG 59.400 66.667 0.00 0.00 0.00 4.79
2488 2848 3.424105 ATGCAGAAGGGGAGGGGC 61.424 66.667 0.00 0.00 0.00 5.80
2489 2849 3.978241 ATGCAGAAGGGGAGGGGCT 62.978 63.158 0.00 0.00 0.00 5.19
2490 2850 4.120755 GCAGAAGGGGAGGGGCTG 62.121 72.222 0.00 0.00 0.00 4.85
2491 2851 3.415087 CAGAAGGGGAGGGGCTGG 61.415 72.222 0.00 0.00 0.00 4.85
2509 2869 4.394712 CCCTGGTCGCCCTGTGTC 62.395 72.222 0.00 0.00 0.00 3.67
2510 2870 4.394712 CCTGGTCGCCCTGTGTCC 62.395 72.222 0.00 0.00 0.00 4.02
2511 2871 4.742201 CTGGTCGCCCTGTGTCCG 62.742 72.222 0.00 0.00 0.00 4.79
2517 2877 3.702048 GCCCTGTGTCCGCCACTA 61.702 66.667 5.26 0.00 44.81 2.74
2518 2878 2.579201 CCCTGTGTCCGCCACTAG 59.421 66.667 5.26 0.00 44.81 2.57
2519 2879 2.283529 CCCTGTGTCCGCCACTAGT 61.284 63.158 0.00 0.00 44.81 2.57
2520 2880 1.079819 CCTGTGTCCGCCACTAGTG 60.080 63.158 16.34 16.34 44.81 2.74
2521 2881 1.738099 CTGTGTCCGCCACTAGTGC 60.738 63.158 17.86 11.72 44.81 4.40
2522 2882 2.434359 GTGTCCGCCACTAGTGCC 60.434 66.667 17.86 5.42 41.11 5.01
2523 2883 2.920384 TGTCCGCCACTAGTGCCA 60.920 61.111 17.86 5.48 0.00 4.92
2524 2884 2.434359 GTCCGCCACTAGTGCCAC 60.434 66.667 17.86 7.92 0.00 5.01
2525 2885 4.063967 TCCGCCACTAGTGCCACG 62.064 66.667 17.86 18.34 0.00 4.94
2526 2886 4.373116 CCGCCACTAGTGCCACGT 62.373 66.667 17.86 0.00 0.00 4.49
2527 2887 2.569657 CGCCACTAGTGCCACGTA 59.430 61.111 17.86 0.00 0.00 3.57
2528 2888 1.516386 CGCCACTAGTGCCACGTAG 60.516 63.158 17.86 3.06 0.00 3.51
2529 2889 1.153628 GCCACTAGTGCCACGTAGG 60.154 63.158 17.86 2.19 41.84 3.18
2530 2890 1.515954 CCACTAGTGCCACGTAGGG 59.484 63.158 17.86 0.00 38.09 3.53
2531 2891 0.968901 CCACTAGTGCCACGTAGGGA 60.969 60.000 17.86 0.00 38.09 4.20
2532 2892 1.112113 CACTAGTGCCACGTAGGGAT 58.888 55.000 10.54 0.00 41.14 3.85
2533 2893 1.480954 CACTAGTGCCACGTAGGGATT 59.519 52.381 10.54 0.00 41.14 3.01
2534 2894 2.093658 CACTAGTGCCACGTAGGGATTT 60.094 50.000 10.54 0.00 41.14 2.17
2535 2895 2.093658 ACTAGTGCCACGTAGGGATTTG 60.094 50.000 0.00 0.00 41.14 2.32
2536 2896 0.690762 AGTGCCACGTAGGGATTTGT 59.309 50.000 0.00 0.00 41.14 2.83
2537 2897 0.802494 GTGCCACGTAGGGATTTGTG 59.198 55.000 0.00 0.00 41.14 3.33
2538 2898 0.958382 TGCCACGTAGGGATTTGTGC 60.958 55.000 0.00 0.00 38.09 4.57
2539 2899 1.977594 GCCACGTAGGGATTTGTGCG 61.978 60.000 0.00 0.00 38.09 5.34
2540 2900 1.423845 CACGTAGGGATTTGTGCGC 59.576 57.895 0.00 0.00 0.00 6.09
2541 2901 2.098233 ACGTAGGGATTTGTGCGCG 61.098 57.895 0.00 0.00 0.00 6.86
2542 2902 2.098233 CGTAGGGATTTGTGCGCGT 61.098 57.895 8.43 0.00 0.00 6.01
2543 2903 1.632046 CGTAGGGATTTGTGCGCGTT 61.632 55.000 8.43 0.00 0.00 4.84
2544 2904 0.096454 GTAGGGATTTGTGCGCGTTC 59.904 55.000 8.43 1.34 0.00 3.95
2545 2905 0.320858 TAGGGATTTGTGCGCGTTCA 60.321 50.000 8.43 4.43 0.00 3.18
2546 2906 1.154225 GGGATTTGTGCGCGTTCAG 60.154 57.895 8.43 0.00 0.00 3.02
2547 2907 1.154225 GGATTTGTGCGCGTTCAGG 60.154 57.895 8.43 0.00 0.00 3.86
2548 2908 1.573829 GGATTTGTGCGCGTTCAGGA 61.574 55.000 8.43 1.05 0.00 3.86
2549 2909 0.179215 GATTTGTGCGCGTTCAGGAG 60.179 55.000 8.43 0.00 0.00 3.69
2550 2910 0.602638 ATTTGTGCGCGTTCAGGAGA 60.603 50.000 8.43 0.00 0.00 3.71
2551 2911 0.812014 TTTGTGCGCGTTCAGGAGAA 60.812 50.000 8.43 0.00 0.00 2.87
2552 2912 1.221466 TTGTGCGCGTTCAGGAGAAG 61.221 55.000 8.43 0.00 33.63 2.85
2553 2913 1.372997 GTGCGCGTTCAGGAGAAGA 60.373 57.895 8.43 0.00 33.63 2.87
2554 2914 0.944311 GTGCGCGTTCAGGAGAAGAA 60.944 55.000 8.43 0.00 33.63 2.52
2555 2915 0.667487 TGCGCGTTCAGGAGAAGAAG 60.667 55.000 8.43 0.00 33.63 2.85
2556 2916 0.388649 GCGCGTTCAGGAGAAGAAGA 60.389 55.000 8.43 0.00 33.63 2.87
2557 2917 1.935300 GCGCGTTCAGGAGAAGAAGAA 60.935 52.381 8.43 0.00 33.63 2.52
2558 2918 1.989165 CGCGTTCAGGAGAAGAAGAAG 59.011 52.381 0.00 0.00 33.63 2.85
2559 2919 2.342179 GCGTTCAGGAGAAGAAGAAGG 58.658 52.381 0.00 0.00 33.63 3.46
2560 2920 2.028930 GCGTTCAGGAGAAGAAGAAGGA 60.029 50.000 0.00 0.00 33.63 3.36
2561 2921 3.843999 CGTTCAGGAGAAGAAGAAGGAG 58.156 50.000 0.00 0.00 33.63 3.69
2562 2922 3.508012 CGTTCAGGAGAAGAAGAAGGAGA 59.492 47.826 0.00 0.00 33.63 3.71
2563 2923 4.617298 CGTTCAGGAGAAGAAGAAGGAGAC 60.617 50.000 0.00 0.00 33.63 3.36
2564 2924 3.085533 TCAGGAGAAGAAGAAGGAGACG 58.914 50.000 0.00 0.00 0.00 4.18
2565 2925 2.823154 CAGGAGAAGAAGAAGGAGACGT 59.177 50.000 0.00 0.00 0.00 4.34
2566 2926 2.823154 AGGAGAAGAAGAAGGAGACGTG 59.177 50.000 0.00 0.00 0.00 4.49
2567 2927 2.601804 GAGAAGAAGAAGGAGACGTGC 58.398 52.381 0.00 0.00 0.00 5.34
2568 2928 1.068194 AGAAGAAGAAGGAGACGTGCG 60.068 52.381 0.00 0.00 0.00 5.34
2569 2929 0.667792 AAGAAGAAGGAGACGTGCGC 60.668 55.000 0.00 0.00 0.00 6.09
2570 2930 2.430921 AAGAAGGAGACGTGCGCG 60.431 61.111 19.78 19.78 44.93 6.86
2580 2940 4.968164 CGTGCGCGTGTGTTCGTG 62.968 66.667 12.43 0.00 42.99 4.35
2584 2944 4.273951 CGCGTGTGTTCGTGCGTT 62.274 61.111 0.00 0.00 45.12 4.84
2585 2945 2.022207 GCGTGTGTTCGTGCGTTT 59.978 55.556 0.00 0.00 0.00 3.60
2586 2946 1.581657 GCGTGTGTTCGTGCGTTTT 60.582 52.632 0.00 0.00 0.00 2.43
2587 2947 1.129301 GCGTGTGTTCGTGCGTTTTT 61.129 50.000 0.00 0.00 0.00 1.94
2610 2970 8.984891 TTTTTCTTTGATACCATGCACATAAG 57.015 30.769 0.00 0.00 0.00 1.73
2611 2971 6.698008 TTCTTTGATACCATGCACATAAGG 57.302 37.500 0.00 0.00 0.00 2.69
2612 2972 4.580167 TCTTTGATACCATGCACATAAGGC 59.420 41.667 0.00 0.00 0.00 4.35
2613 2973 2.862541 TGATACCATGCACATAAGGCC 58.137 47.619 0.00 0.00 0.00 5.19
2614 2974 2.162681 GATACCATGCACATAAGGCCC 58.837 52.381 0.00 0.00 0.00 5.80
2615 2975 0.922626 TACCATGCACATAAGGCCCA 59.077 50.000 0.00 0.00 0.00 5.36
2616 2976 0.040942 ACCATGCACATAAGGCCCAA 59.959 50.000 0.00 0.00 0.00 4.12
2617 2977 1.343277 ACCATGCACATAAGGCCCAAT 60.343 47.619 0.00 0.00 0.00 3.16
2618 2978 2.091389 ACCATGCACATAAGGCCCAATA 60.091 45.455 0.00 0.00 0.00 1.90
2619 2979 2.297033 CCATGCACATAAGGCCCAATAC 59.703 50.000 0.00 0.00 0.00 1.89
2620 2980 2.065899 TGCACATAAGGCCCAATACC 57.934 50.000 0.00 0.00 0.00 2.73
2621 2981 1.286257 TGCACATAAGGCCCAATACCA 59.714 47.619 0.00 0.00 0.00 3.25
2622 2982 2.091389 TGCACATAAGGCCCAATACCAT 60.091 45.455 0.00 0.00 0.00 3.55
2623 2983 2.558359 GCACATAAGGCCCAATACCATC 59.442 50.000 0.00 0.00 0.00 3.51
2624 2984 3.751893 GCACATAAGGCCCAATACCATCT 60.752 47.826 0.00 0.00 0.00 2.90
2625 2985 4.074970 CACATAAGGCCCAATACCATCTC 58.925 47.826 0.00 0.00 0.00 2.75
2626 2986 3.983410 ACATAAGGCCCAATACCATCTCT 59.017 43.478 0.00 0.00 0.00 3.10
2627 2987 5.013079 CACATAAGGCCCAATACCATCTCTA 59.987 44.000 0.00 0.00 0.00 2.43
2628 2988 5.610982 ACATAAGGCCCAATACCATCTCTAA 59.389 40.000 0.00 0.00 0.00 2.10
2629 2989 4.713792 AAGGCCCAATACCATCTCTAAG 57.286 45.455 0.00 0.00 0.00 2.18
2630 2990 2.982488 AGGCCCAATACCATCTCTAAGG 59.018 50.000 0.00 0.00 0.00 2.69
2631 2991 2.979678 GGCCCAATACCATCTCTAAGGA 59.020 50.000 0.00 0.00 0.00 3.36
2632 2992 3.589288 GGCCCAATACCATCTCTAAGGAT 59.411 47.826 0.00 0.00 0.00 3.24
2633 2993 4.783227 GGCCCAATACCATCTCTAAGGATA 59.217 45.833 0.00 0.00 0.00 2.59
2634 2994 5.430089 GGCCCAATACCATCTCTAAGGATAT 59.570 44.000 0.00 0.00 0.00 1.63
2635 2995 6.408662 GGCCCAATACCATCTCTAAGGATATC 60.409 46.154 0.00 0.00 0.00 1.63
2636 2996 6.408662 GCCCAATACCATCTCTAAGGATATCC 60.409 46.154 14.41 14.41 0.00 2.59
2647 3007 2.815357 AGGATATCCTGTAGGCCCAA 57.185 50.000 23.95 0.00 46.55 4.12
2648 3008 3.297994 AGGATATCCTGTAGGCCCAAT 57.702 47.619 23.95 0.00 46.55 3.16
2649 3009 3.613559 AGGATATCCTGTAGGCCCAATT 58.386 45.455 23.95 0.00 46.55 2.32
2650 3010 3.990245 AGGATATCCTGTAGGCCCAATTT 59.010 43.478 23.95 0.00 46.55 1.82
2651 3011 4.043435 AGGATATCCTGTAGGCCCAATTTC 59.957 45.833 23.95 0.00 46.55 2.17
2652 3012 4.202567 GGATATCCTGTAGGCCCAATTTCA 60.203 45.833 14.97 0.00 34.44 2.69
2653 3013 3.756082 ATCCTGTAGGCCCAATTTCAA 57.244 42.857 0.00 0.00 34.44 2.69
2654 3014 3.534357 TCCTGTAGGCCCAATTTCAAA 57.466 42.857 0.00 0.00 34.44 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
276 277 2.832129 TGAGAAAGATCTGGGCGTTACT 59.168 45.455 0.00 0.00 35.54 2.24
777 778 0.537143 ATGACAGCCGCCTTTGTGAA 60.537 50.000 0.00 0.00 0.00 3.18
977 978 9.537848 CCATAACGTAATTGTCTACTGTTTTTC 57.462 33.333 0.00 0.00 0.00 2.29
1015 1017 5.237127 TCAAGCACAGAATACTTGTGTTGAG 59.763 40.000 13.85 4.89 41.22 3.02
1120 1122 8.635328 AGGTACGGTTGAAACATTTTTCTTAAT 58.365 29.630 5.95 0.00 41.64 1.40
1161 1163 9.649316 TTCAGGAAAAAGATAACTAAAGGGAAA 57.351 29.630 0.00 0.00 0.00 3.13
1224 1227 7.498900 ACGAGGCATATCAACTTTGAATTATGA 59.501 33.333 13.33 0.00 41.13 2.15
1225 1228 7.642669 ACGAGGCATATCAACTTTGAATTATG 58.357 34.615 7.69 7.69 41.13 1.90
1226 1229 7.807977 ACGAGGCATATCAACTTTGAATTAT 57.192 32.000 0.00 0.00 41.13 1.28
1227 1230 7.985184 ACTACGAGGCATATCAACTTTGAATTA 59.015 33.333 0.00 0.00 41.13 1.40
1228 1231 6.823689 ACTACGAGGCATATCAACTTTGAATT 59.176 34.615 0.00 0.00 41.13 2.17
1229 1232 6.349300 ACTACGAGGCATATCAACTTTGAAT 58.651 36.000 0.00 0.00 41.13 2.57
1230 1233 5.730550 ACTACGAGGCATATCAACTTTGAA 58.269 37.500 0.00 0.00 41.13 2.69
1283 1286 9.869757 ATTGTTAAATAACACTAGATTTTGCCC 57.130 29.630 5.53 0.00 45.01 5.36
1316 1319 2.290641 CGGGAAAACACCTCTTGTCTTG 59.709 50.000 0.00 0.00 37.51 3.02
1378 1381 7.931948 GCCAGTACTACCAAAATCATACATACT 59.068 37.037 0.00 0.00 0.00 2.12
1388 1391 5.321102 TGTCATTGCCAGTACTACCAAAAT 58.679 37.500 10.34 0.00 0.00 1.82
1407 1410 9.481340 GAACAGCTACTGATATATTTCATGTCA 57.519 33.333 0.78 0.00 35.18 3.58
1428 1431 0.740149 TGCAAACACAGGCAGAACAG 59.260 50.000 0.00 0.00 34.58 3.16
1507 1510 1.592400 CGTCGTCTTCCAGGCCTACA 61.592 60.000 3.98 0.00 0.00 2.74
1586 1589 5.183904 CCTTTTTATCTTGCTTGCAGTAGGT 59.816 40.000 0.00 0.00 0.00 3.08
1587 1590 5.393461 CCCTTTTTATCTTGCTTGCAGTAGG 60.393 44.000 0.00 0.00 0.00 3.18
1590 1593 4.151883 TCCCTTTTTATCTTGCTTGCAGT 58.848 39.130 0.00 0.00 0.00 4.40
1677 1680 8.585018 CCCAAGTAAATCTTTATTTCCACACTT 58.415 33.333 0.00 0.00 36.67 3.16
1696 1699 7.775053 AAACAATTCTTAATGCTCCCAAGTA 57.225 32.000 0.00 0.00 0.00 2.24
1697 1700 6.670695 AAACAATTCTTAATGCTCCCAAGT 57.329 33.333 0.00 0.00 0.00 3.16
1698 1701 7.442062 ACAAAAACAATTCTTAATGCTCCCAAG 59.558 33.333 0.00 0.00 0.00 3.61
1699 1702 7.278875 ACAAAAACAATTCTTAATGCTCCCAA 58.721 30.769 0.00 0.00 0.00 4.12
1700 1703 6.825610 ACAAAAACAATTCTTAATGCTCCCA 58.174 32.000 0.00 0.00 0.00 4.37
1701 1704 7.728847 AACAAAAACAATTCTTAATGCTCCC 57.271 32.000 0.00 0.00 0.00 4.30
1702 1705 9.476202 AGTAACAAAAACAATTCTTAATGCTCC 57.524 29.630 0.00 0.00 0.00 4.70
1766 1769 9.553064 CTAGCCACACATAAATTAGAAGAAGAT 57.447 33.333 0.00 0.00 0.00 2.40
1801 1804 4.462133 TCTACTCTTAATAGCCTGAGCGT 58.538 43.478 0.00 0.00 46.67 5.07
1821 1824 4.759183 TCGACATCAATCTCGATCTGATCT 59.241 41.667 15.16 0.00 34.04 2.75
1835 1838 4.762251 TGTCTCTCTTTCTCTCGACATCAA 59.238 41.667 0.00 0.00 0.00 2.57
1929 1936 0.933097 CCAAAGATGACGAGCCGATG 59.067 55.000 1.50 0.00 0.00 3.84
1965 1972 1.512734 CGCTTCGCCAAACATCAGC 60.513 57.895 0.00 0.00 0.00 4.26
1967 1974 0.040514 CAACGCTTCGCCAAACATCA 60.041 50.000 0.00 0.00 0.00 3.07
1976 1983 3.774702 GACCCGTCAACGCTTCGC 61.775 66.667 0.00 0.00 38.18 4.70
1977 1984 3.110178 GGACCCGTCAACGCTTCG 61.110 66.667 0.00 0.00 38.18 3.79
2013 2020 1.187087 GCGCTAGGGTATAGGCATCT 58.813 55.000 8.77 0.00 0.00 2.90
2015 2022 0.898320 CTGCGCTAGGGTATAGGCAT 59.102 55.000 9.73 0.00 0.00 4.40
2109 2119 3.057174 CCGCACCATCTACTAATCTCTCC 60.057 52.174 0.00 0.00 0.00 3.71
2129 2139 2.073816 CTAGGCAAGGTTAACACACCG 58.926 52.381 8.10 0.00 42.33 4.94
2270 2630 2.967615 GCTCCCGTGATTAGCGCC 60.968 66.667 2.29 0.00 0.00 6.53
2274 2634 2.288702 CCTGAGATGCTCCCGTGATTAG 60.289 54.545 0.00 0.00 0.00 1.73
2275 2635 1.688735 CCTGAGATGCTCCCGTGATTA 59.311 52.381 0.00 0.00 0.00 1.75
2276 2636 0.467384 CCTGAGATGCTCCCGTGATT 59.533 55.000 0.00 0.00 0.00 2.57
2277 2637 0.397675 TCCTGAGATGCTCCCGTGAT 60.398 55.000 0.00 0.00 0.00 3.06
2278 2638 1.000359 TCCTGAGATGCTCCCGTGA 60.000 57.895 0.00 0.00 0.00 4.35
2279 2639 1.039785 TCTCCTGAGATGCTCCCGTG 61.040 60.000 0.00 0.00 31.41 4.94
2280 2640 1.040339 GTCTCCTGAGATGCTCCCGT 61.040 60.000 0.00 0.00 39.97 5.28
2281 2641 1.039785 TGTCTCCTGAGATGCTCCCG 61.040 60.000 0.00 0.00 39.97 5.14
2282 2642 0.752054 CTGTCTCCTGAGATGCTCCC 59.248 60.000 0.00 0.00 39.97 4.30
2283 2643 1.774110 TCTGTCTCCTGAGATGCTCC 58.226 55.000 0.00 0.00 39.97 4.70
2284 2644 2.101249 CCTTCTGTCTCCTGAGATGCTC 59.899 54.545 0.00 0.00 39.97 4.26
2285 2645 2.109774 CCTTCTGTCTCCTGAGATGCT 58.890 52.381 0.00 0.00 39.97 3.79
2286 2646 1.473080 GCCTTCTGTCTCCTGAGATGC 60.473 57.143 0.00 0.00 39.97 3.91
2287 2647 1.138661 GGCCTTCTGTCTCCTGAGATG 59.861 57.143 0.00 0.00 39.97 2.90
2288 2648 1.273495 TGGCCTTCTGTCTCCTGAGAT 60.273 52.381 3.32 0.00 39.97 2.75
2289 2649 0.115152 TGGCCTTCTGTCTCCTGAGA 59.885 55.000 3.32 0.00 34.56 3.27
2290 2650 0.979665 TTGGCCTTCTGTCTCCTGAG 59.020 55.000 3.32 0.00 0.00 3.35
2291 2651 1.556911 GATTGGCCTTCTGTCTCCTGA 59.443 52.381 3.32 0.00 0.00 3.86
2292 2652 1.741732 CGATTGGCCTTCTGTCTCCTG 60.742 57.143 3.32 0.00 0.00 3.86
2293 2653 0.539051 CGATTGGCCTTCTGTCTCCT 59.461 55.000 3.32 0.00 0.00 3.69
2294 2654 1.092345 GCGATTGGCCTTCTGTCTCC 61.092 60.000 3.32 0.00 34.80 3.71
2295 2655 0.107945 AGCGATTGGCCTTCTGTCTC 60.108 55.000 3.32 0.00 45.17 3.36
2296 2656 0.107945 GAGCGATTGGCCTTCTGTCT 60.108 55.000 3.32 0.00 45.17 3.41
2297 2657 0.391661 TGAGCGATTGGCCTTCTGTC 60.392 55.000 3.32 1.49 45.17 3.51
2298 2658 0.036732 TTGAGCGATTGGCCTTCTGT 59.963 50.000 3.32 0.00 45.17 3.41
2299 2659 1.332997 GATTGAGCGATTGGCCTTCTG 59.667 52.381 3.32 0.00 45.17 3.02
2300 2660 1.211457 AGATTGAGCGATTGGCCTTCT 59.789 47.619 3.32 0.00 45.17 2.85
2301 2661 1.673168 AGATTGAGCGATTGGCCTTC 58.327 50.000 3.32 0.00 45.17 3.46
2302 2662 2.134789 AAGATTGAGCGATTGGCCTT 57.865 45.000 3.32 0.00 45.17 4.35
2303 2663 2.019984 GAAAGATTGAGCGATTGGCCT 58.980 47.619 3.32 0.00 45.17 5.19
2304 2664 1.066152 GGAAAGATTGAGCGATTGGCC 59.934 52.381 0.00 0.00 45.17 5.36
2305 2665 2.019984 AGGAAAGATTGAGCGATTGGC 58.980 47.619 0.00 0.00 44.05 4.52
2306 2666 4.878397 AGTAAGGAAAGATTGAGCGATTGG 59.122 41.667 0.00 0.00 0.00 3.16
2307 2667 6.758886 AGTAGTAAGGAAAGATTGAGCGATTG 59.241 38.462 0.00 0.00 0.00 2.67
2308 2668 6.879400 AGTAGTAAGGAAAGATTGAGCGATT 58.121 36.000 0.00 0.00 0.00 3.34
2309 2669 6.472686 AGTAGTAAGGAAAGATTGAGCGAT 57.527 37.500 0.00 0.00 0.00 4.58
2310 2670 5.916661 AGTAGTAAGGAAAGATTGAGCGA 57.083 39.130 0.00 0.00 0.00 4.93
2311 2671 7.653647 AGATAGTAGTAAGGAAAGATTGAGCG 58.346 38.462 0.00 0.00 0.00 5.03
2318 2678 9.282569 GTCGGATTAGATAGTAGTAAGGAAAGA 57.717 37.037 0.00 0.00 0.00 2.52
2319 2679 8.513774 GGTCGGATTAGATAGTAGTAAGGAAAG 58.486 40.741 0.00 0.00 0.00 2.62
2320 2680 7.449704 GGGTCGGATTAGATAGTAGTAAGGAAA 59.550 40.741 0.00 0.00 0.00 3.13
2321 2681 6.944862 GGGTCGGATTAGATAGTAGTAAGGAA 59.055 42.308 0.00 0.00 0.00 3.36
2322 2682 6.479884 GGGTCGGATTAGATAGTAGTAAGGA 58.520 44.000 0.00 0.00 0.00 3.36
2323 2683 5.353678 CGGGTCGGATTAGATAGTAGTAAGG 59.646 48.000 0.00 0.00 0.00 2.69
2324 2684 6.169094 TCGGGTCGGATTAGATAGTAGTAAG 58.831 44.000 0.00 0.00 0.00 2.34
2325 2685 6.114187 TCGGGTCGGATTAGATAGTAGTAA 57.886 41.667 0.00 0.00 0.00 2.24
2326 2686 5.745312 TCGGGTCGGATTAGATAGTAGTA 57.255 43.478 0.00 0.00 0.00 1.82
2327 2687 4.630644 TCGGGTCGGATTAGATAGTAGT 57.369 45.455 0.00 0.00 0.00 2.73
2328 2688 5.954296 TTTCGGGTCGGATTAGATAGTAG 57.046 43.478 0.00 0.00 0.00 2.57
2329 2689 6.713762 TTTTTCGGGTCGGATTAGATAGTA 57.286 37.500 0.00 0.00 0.00 1.82
2330 2690 5.598769 CTTTTTCGGGTCGGATTAGATAGT 58.401 41.667 0.00 0.00 0.00 2.12
2331 2691 4.448060 GCTTTTTCGGGTCGGATTAGATAG 59.552 45.833 0.00 0.00 0.00 2.08
2332 2692 4.141892 TGCTTTTTCGGGTCGGATTAGATA 60.142 41.667 0.00 0.00 0.00 1.98
2333 2693 3.203716 GCTTTTTCGGGTCGGATTAGAT 58.796 45.455 0.00 0.00 0.00 1.98
2334 2694 2.027929 TGCTTTTTCGGGTCGGATTAGA 60.028 45.455 0.00 0.00 0.00 2.10
2335 2695 2.352388 TGCTTTTTCGGGTCGGATTAG 58.648 47.619 0.00 0.00 0.00 1.73
2336 2696 2.476126 TGCTTTTTCGGGTCGGATTA 57.524 45.000 0.00 0.00 0.00 1.75
2337 2697 1.611519 TTGCTTTTTCGGGTCGGATT 58.388 45.000 0.00 0.00 0.00 3.01
2338 2698 1.834188 ATTGCTTTTTCGGGTCGGAT 58.166 45.000 0.00 0.00 0.00 4.18
2339 2699 2.078392 GTATTGCTTTTTCGGGTCGGA 58.922 47.619 0.00 0.00 0.00 4.55
2340 2700 1.131693 GGTATTGCTTTTTCGGGTCGG 59.868 52.381 0.00 0.00 0.00 4.79
2341 2701 1.131693 GGGTATTGCTTTTTCGGGTCG 59.868 52.381 0.00 0.00 0.00 4.79
2342 2702 1.131693 CGGGTATTGCTTTTTCGGGTC 59.868 52.381 0.00 0.00 0.00 4.46
2343 2703 1.170442 CGGGTATTGCTTTTTCGGGT 58.830 50.000 0.00 0.00 0.00 5.28
2344 2704 1.131693 GTCGGGTATTGCTTTTTCGGG 59.868 52.381 0.00 0.00 0.00 5.14
2345 2705 1.131693 GGTCGGGTATTGCTTTTTCGG 59.868 52.381 0.00 0.00 0.00 4.30
2346 2706 1.131693 GGGTCGGGTATTGCTTTTTCG 59.868 52.381 0.00 0.00 0.00 3.46
2347 2707 1.131693 CGGGTCGGGTATTGCTTTTTC 59.868 52.381 0.00 0.00 0.00 2.29
2348 2708 1.170442 CGGGTCGGGTATTGCTTTTT 58.830 50.000 0.00 0.00 0.00 1.94
2349 2709 0.678684 CCGGGTCGGGTATTGCTTTT 60.679 55.000 0.00 0.00 44.15 2.27
2350 2710 1.078001 CCGGGTCGGGTATTGCTTT 60.078 57.895 0.00 0.00 44.15 3.51
2351 2711 2.587889 CCGGGTCGGGTATTGCTT 59.412 61.111 0.00 0.00 44.15 3.91
2388 2748 0.388294 GAAATCTAGACCCGACCCCG 59.612 60.000 0.00 0.00 0.00 5.73
2389 2749 1.492764 TGAAATCTAGACCCGACCCC 58.507 55.000 0.00 0.00 0.00 4.95
2390 2750 2.742204 GCTTGAAATCTAGACCCGACCC 60.742 54.545 0.00 0.00 0.00 4.46
2391 2751 2.552031 GCTTGAAATCTAGACCCGACC 58.448 52.381 0.00 0.00 0.00 4.79
2392 2752 2.552031 GGCTTGAAATCTAGACCCGAC 58.448 52.381 0.00 0.00 0.00 4.79
2393 2753 1.485066 GGGCTTGAAATCTAGACCCGA 59.515 52.381 5.54 0.00 40.41 5.14
2394 2754 1.806623 CGGGCTTGAAATCTAGACCCG 60.807 57.143 21.50 21.50 42.84 5.28
2395 2755 1.485066 TCGGGCTTGAAATCTAGACCC 59.515 52.381 10.58 11.07 42.84 4.46
2396 2756 2.981859 TCGGGCTTGAAATCTAGACC 57.018 50.000 6.68 6.68 42.44 3.85
2397 2757 3.134458 CCATCGGGCTTGAAATCTAGAC 58.866 50.000 0.00 0.00 0.00 2.59
2398 2758 2.771943 ACCATCGGGCTTGAAATCTAGA 59.228 45.455 0.00 0.00 37.90 2.43
2399 2759 3.134458 GACCATCGGGCTTGAAATCTAG 58.866 50.000 0.00 0.00 37.90 2.43
2400 2760 2.483013 CGACCATCGGGCTTGAAATCTA 60.483 50.000 0.00 0.00 36.00 1.98
2401 2761 1.743772 CGACCATCGGGCTTGAAATCT 60.744 52.381 0.00 0.00 36.00 2.40
2402 2762 0.657840 CGACCATCGGGCTTGAAATC 59.342 55.000 0.00 0.00 36.00 2.17
2403 2763 2.780595 CGACCATCGGGCTTGAAAT 58.219 52.632 0.00 0.00 36.00 2.17
2404 2764 4.294523 CGACCATCGGGCTTGAAA 57.705 55.556 0.00 0.00 36.00 2.69
2414 2774 4.554036 GAGCCCAGCCCGACCATC 62.554 72.222 0.00 0.00 0.00 3.51
2428 2788 0.940833 GCTTGAAATCTAGGCCGAGC 59.059 55.000 8.21 0.00 0.00 5.03
2429 2789 2.159043 TCAGCTTGAAATCTAGGCCGAG 60.159 50.000 6.52 6.52 0.00 4.63
2430 2790 1.831106 TCAGCTTGAAATCTAGGCCGA 59.169 47.619 0.00 0.00 0.00 5.54
2431 2791 2.315925 TCAGCTTGAAATCTAGGCCG 57.684 50.000 0.00 0.00 0.00 6.13
2441 2801 3.064207 AGCGACGTTATTTCAGCTTGAA 58.936 40.909 0.00 0.00 34.03 2.69
2442 2802 2.683968 AGCGACGTTATTTCAGCTTGA 58.316 42.857 0.00 0.00 0.00 3.02
2443 2803 4.577687 TTAGCGACGTTATTTCAGCTTG 57.422 40.909 0.00 0.00 36.30 4.01
2444 2804 5.796350 AATTAGCGACGTTATTTCAGCTT 57.204 34.783 0.00 0.00 36.30 3.74
2445 2805 5.233689 GGTAATTAGCGACGTTATTTCAGCT 59.766 40.000 0.00 0.00 38.57 4.24
2446 2806 5.429615 GGTAATTAGCGACGTTATTTCAGC 58.570 41.667 0.00 0.00 0.00 4.26
2447 2807 5.521010 TGGGTAATTAGCGACGTTATTTCAG 59.479 40.000 8.49 0.00 0.00 3.02
2448 2808 5.417811 TGGGTAATTAGCGACGTTATTTCA 58.582 37.500 8.49 0.00 0.00 2.69
2449 2809 5.971895 TGGGTAATTAGCGACGTTATTTC 57.028 39.130 8.49 0.00 0.00 2.17
2450 2810 5.277634 GCATGGGTAATTAGCGACGTTATTT 60.278 40.000 8.49 0.43 0.00 1.40
2451 2811 4.212636 GCATGGGTAATTAGCGACGTTATT 59.787 41.667 8.49 0.00 0.00 1.40
2452 2812 3.744426 GCATGGGTAATTAGCGACGTTAT 59.256 43.478 8.49 0.00 0.00 1.89
2453 2813 3.125316 GCATGGGTAATTAGCGACGTTA 58.875 45.455 8.49 0.00 0.00 3.18
2454 2814 1.937899 GCATGGGTAATTAGCGACGTT 59.062 47.619 8.49 0.00 0.00 3.99
2455 2815 1.134640 TGCATGGGTAATTAGCGACGT 60.135 47.619 8.49 0.00 0.00 4.34
2456 2816 1.526887 CTGCATGGGTAATTAGCGACG 59.473 52.381 8.49 0.00 0.00 5.12
2457 2817 2.833794 TCTGCATGGGTAATTAGCGAC 58.166 47.619 8.49 0.00 0.00 5.19
2458 2818 3.466836 CTTCTGCATGGGTAATTAGCGA 58.533 45.455 8.49 5.22 0.00 4.93
2459 2819 2.549754 CCTTCTGCATGGGTAATTAGCG 59.450 50.000 8.49 0.00 0.00 4.26
2460 2820 2.887152 CCCTTCTGCATGGGTAATTAGC 59.113 50.000 6.10 6.10 38.65 3.09
2461 2821 3.138283 TCCCCTTCTGCATGGGTAATTAG 59.862 47.826 15.56 3.11 41.82 1.73
2462 2822 3.127250 TCCCCTTCTGCATGGGTAATTA 58.873 45.455 15.56 0.00 41.82 1.40
2463 2823 1.929494 TCCCCTTCTGCATGGGTAATT 59.071 47.619 15.56 0.00 41.82 1.40
2464 2824 1.496429 CTCCCCTTCTGCATGGGTAAT 59.504 52.381 15.56 0.00 41.82 1.89
2465 2825 0.918983 CTCCCCTTCTGCATGGGTAA 59.081 55.000 15.56 5.65 41.82 2.85
2466 2826 0.988145 CCTCCCCTTCTGCATGGGTA 60.988 60.000 15.56 2.64 41.82 3.69
2467 2827 2.311854 CCTCCCCTTCTGCATGGGT 61.312 63.158 15.56 0.00 41.82 4.51
2468 2828 2.599597 CCTCCCCTTCTGCATGGG 59.400 66.667 11.38 11.38 42.98 4.00
2469 2829 2.599597 CCCTCCCCTTCTGCATGG 59.400 66.667 0.00 0.00 0.00 3.66
2470 2830 2.599597 CCCCTCCCCTTCTGCATG 59.400 66.667 0.00 0.00 0.00 4.06
2471 2831 3.424105 GCCCCTCCCCTTCTGCAT 61.424 66.667 0.00 0.00 0.00 3.96
2472 2832 4.682714 AGCCCCTCCCCTTCTGCA 62.683 66.667 0.00 0.00 0.00 4.41
2473 2833 4.120755 CAGCCCCTCCCCTTCTGC 62.121 72.222 0.00 0.00 0.00 4.26
2474 2834 3.415087 CCAGCCCCTCCCCTTCTG 61.415 72.222 0.00 0.00 0.00 3.02
2512 2872 0.968901 TCCCTACGTGGCACTAGTGG 60.969 60.000 23.95 16.47 0.00 4.00
2513 2873 1.112113 ATCCCTACGTGGCACTAGTG 58.888 55.000 18.93 18.93 0.00 2.74
2514 2874 1.861982 AATCCCTACGTGGCACTAGT 58.138 50.000 16.72 9.68 0.00 2.57
2515 2875 2.093658 ACAAATCCCTACGTGGCACTAG 60.094 50.000 16.72 14.90 0.00 2.57
2516 2876 1.903860 ACAAATCCCTACGTGGCACTA 59.096 47.619 16.72 6.37 0.00 2.74
2517 2877 0.690762 ACAAATCCCTACGTGGCACT 59.309 50.000 16.72 5.47 0.00 4.40
2518 2878 0.802494 CACAAATCCCTACGTGGCAC 59.198 55.000 7.79 7.79 0.00 5.01
2519 2879 0.958382 GCACAAATCCCTACGTGGCA 60.958 55.000 0.00 0.00 0.00 4.92
2520 2880 1.800681 GCACAAATCCCTACGTGGC 59.199 57.895 0.00 0.00 0.00 5.01
2521 2881 1.977594 GCGCACAAATCCCTACGTGG 61.978 60.000 0.30 0.00 0.00 4.94
2522 2882 1.423845 GCGCACAAATCCCTACGTG 59.576 57.895 0.30 0.00 0.00 4.49
2523 2883 2.098233 CGCGCACAAATCCCTACGT 61.098 57.895 8.75 0.00 0.00 3.57
2524 2884 1.632046 AACGCGCACAAATCCCTACG 61.632 55.000 5.73 0.00 0.00 3.51
2525 2885 0.096454 GAACGCGCACAAATCCCTAC 59.904 55.000 5.73 0.00 0.00 3.18
2526 2886 0.320858 TGAACGCGCACAAATCCCTA 60.321 50.000 5.73 0.00 0.00 3.53
2527 2887 1.577328 CTGAACGCGCACAAATCCCT 61.577 55.000 5.73 0.00 0.00 4.20
2528 2888 1.154225 CTGAACGCGCACAAATCCC 60.154 57.895 5.73 0.00 0.00 3.85
2529 2889 1.154225 CCTGAACGCGCACAAATCC 60.154 57.895 5.73 0.00 0.00 3.01
2530 2890 0.179215 CTCCTGAACGCGCACAAATC 60.179 55.000 5.73 0.00 0.00 2.17
2531 2891 0.602638 TCTCCTGAACGCGCACAAAT 60.603 50.000 5.73 0.00 0.00 2.32
2532 2892 0.812014 TTCTCCTGAACGCGCACAAA 60.812 50.000 5.73 0.00 0.00 2.83
2533 2893 1.221466 CTTCTCCTGAACGCGCACAA 61.221 55.000 5.73 0.00 0.00 3.33
2534 2894 1.664649 CTTCTCCTGAACGCGCACA 60.665 57.895 5.73 5.75 0.00 4.57
2535 2895 0.944311 TTCTTCTCCTGAACGCGCAC 60.944 55.000 5.73 0.00 0.00 5.34
2536 2896 0.667487 CTTCTTCTCCTGAACGCGCA 60.667 55.000 5.73 0.00 0.00 6.09
2537 2897 0.388649 TCTTCTTCTCCTGAACGCGC 60.389 55.000 5.73 0.00 0.00 6.86
2538 2898 1.989165 CTTCTTCTTCTCCTGAACGCG 59.011 52.381 3.53 3.53 0.00 6.01
2539 2899 2.028930 TCCTTCTTCTTCTCCTGAACGC 60.029 50.000 0.00 0.00 0.00 4.84
2540 2900 3.508012 TCTCCTTCTTCTTCTCCTGAACG 59.492 47.826 0.00 0.00 0.00 3.95
2541 2901 4.617298 CGTCTCCTTCTTCTTCTCCTGAAC 60.617 50.000 0.00 0.00 0.00 3.18
2542 2902 3.508012 CGTCTCCTTCTTCTTCTCCTGAA 59.492 47.826 0.00 0.00 0.00 3.02
2543 2903 3.085533 CGTCTCCTTCTTCTTCTCCTGA 58.914 50.000 0.00 0.00 0.00 3.86
2544 2904 2.823154 ACGTCTCCTTCTTCTTCTCCTG 59.177 50.000 0.00 0.00 0.00 3.86
2545 2905 2.823154 CACGTCTCCTTCTTCTTCTCCT 59.177 50.000 0.00 0.00 0.00 3.69
2546 2906 2.672760 GCACGTCTCCTTCTTCTTCTCC 60.673 54.545 0.00 0.00 0.00 3.71
2547 2907 2.601804 GCACGTCTCCTTCTTCTTCTC 58.398 52.381 0.00 0.00 0.00 2.87
2548 2908 1.068194 CGCACGTCTCCTTCTTCTTCT 60.068 52.381 0.00 0.00 0.00 2.85
2549 2909 1.341606 CGCACGTCTCCTTCTTCTTC 58.658 55.000 0.00 0.00 0.00 2.87
2550 2910 0.667792 GCGCACGTCTCCTTCTTCTT 60.668 55.000 0.30 0.00 0.00 2.52
2551 2911 1.080434 GCGCACGTCTCCTTCTTCT 60.080 57.895 0.30 0.00 0.00 2.85
2552 2912 2.437343 CGCGCACGTCTCCTTCTTC 61.437 63.158 8.75 0.00 33.53 2.87
2553 2913 2.430921 CGCGCACGTCTCCTTCTT 60.431 61.111 8.75 0.00 33.53 2.52
2568 2928 1.129301 AAAAACGCACGAACACACGC 61.129 50.000 0.00 0.00 36.70 5.34
2569 2929 2.919286 AAAAACGCACGAACACACG 58.081 47.368 0.00 0.00 39.31 4.49
2585 2945 8.034215 CCTTATGTGCATGGTATCAAAGAAAAA 58.966 33.333 0.00 0.00 0.00 1.94
2586 2946 7.546358 CCTTATGTGCATGGTATCAAAGAAAA 58.454 34.615 0.00 0.00 0.00 2.29
2587 2947 6.405731 GCCTTATGTGCATGGTATCAAAGAAA 60.406 38.462 0.00 0.00 0.00 2.52
2588 2948 5.067674 GCCTTATGTGCATGGTATCAAAGAA 59.932 40.000 0.00 0.00 0.00 2.52
2589 2949 4.580167 GCCTTATGTGCATGGTATCAAAGA 59.420 41.667 0.00 0.00 0.00 2.52
2590 2950 4.261741 GGCCTTATGTGCATGGTATCAAAG 60.262 45.833 0.00 0.00 0.00 2.77
2591 2951 3.636300 GGCCTTATGTGCATGGTATCAAA 59.364 43.478 0.00 0.00 0.00 2.69
2592 2952 3.221771 GGCCTTATGTGCATGGTATCAA 58.778 45.455 0.00 0.00 0.00 2.57
2593 2953 2.488891 GGGCCTTATGTGCATGGTATCA 60.489 50.000 0.84 0.00 0.00 2.15
2594 2954 2.162681 GGGCCTTATGTGCATGGTATC 58.837 52.381 0.84 0.00 0.00 2.24
2595 2955 1.498576 TGGGCCTTATGTGCATGGTAT 59.501 47.619 4.53 0.00 0.00 2.73
2596 2956 0.922626 TGGGCCTTATGTGCATGGTA 59.077 50.000 4.53 0.00 0.00 3.25
2597 2957 0.040942 TTGGGCCTTATGTGCATGGT 59.959 50.000 4.53 0.00 0.00 3.55
2598 2958 1.416243 ATTGGGCCTTATGTGCATGG 58.584 50.000 4.53 0.00 0.00 3.66
2599 2959 2.297033 GGTATTGGGCCTTATGTGCATG 59.703 50.000 4.53 0.00 0.00 4.06
2600 2960 2.091389 TGGTATTGGGCCTTATGTGCAT 60.091 45.455 4.53 0.00 0.00 3.96
2601 2961 1.286257 TGGTATTGGGCCTTATGTGCA 59.714 47.619 4.53 0.00 0.00 4.57
2602 2962 2.065899 TGGTATTGGGCCTTATGTGC 57.934 50.000 4.53 0.00 0.00 4.57
2603 2963 4.074970 GAGATGGTATTGGGCCTTATGTG 58.925 47.826 4.53 0.00 0.00 3.21
2604 2964 3.983410 AGAGATGGTATTGGGCCTTATGT 59.017 43.478 4.53 0.00 0.00 2.29
2605 2965 4.647564 AGAGATGGTATTGGGCCTTATG 57.352 45.455 4.53 0.00 0.00 1.90
2606 2966 5.251700 CCTTAGAGATGGTATTGGGCCTTAT 59.748 44.000 4.53 0.50 0.00 1.73
2607 2967 4.597507 CCTTAGAGATGGTATTGGGCCTTA 59.402 45.833 4.53 0.00 0.00 2.69
2608 2968 3.395941 CCTTAGAGATGGTATTGGGCCTT 59.604 47.826 4.53 0.00 0.00 4.35
2609 2969 2.982488 CCTTAGAGATGGTATTGGGCCT 59.018 50.000 4.53 0.00 0.00 5.19
2610 2970 2.979678 TCCTTAGAGATGGTATTGGGCC 59.020 50.000 0.00 0.00 0.00 5.80
2611 2971 4.917906 ATCCTTAGAGATGGTATTGGGC 57.082 45.455 0.00 0.00 0.00 5.36
2612 2972 6.905776 AGGATATCCTTAGAGATGGTATTGGG 59.094 42.308 19.18 0.00 46.09 4.12
2613 2973 7.401493 ACAGGATATCCTTAGAGATGGTATTGG 59.599 40.741 22.29 7.24 46.09 3.16
2614 2974 8.372877 ACAGGATATCCTTAGAGATGGTATTG 57.627 38.462 22.29 8.73 46.09 1.90
2615 2975 9.707957 CTACAGGATATCCTTAGAGATGGTATT 57.292 37.037 22.29 0.00 46.09 1.89
2616 2976 8.285891 CCTACAGGATATCCTTAGAGATGGTAT 58.714 40.741 26.43 4.65 46.09 2.73
2617 2977 7.644062 CCTACAGGATATCCTTAGAGATGGTA 58.356 42.308 26.43 19.78 46.09 3.25
2618 2978 6.498538 CCTACAGGATATCCTTAGAGATGGT 58.501 44.000 26.43 19.74 46.09 3.55
2619 2979 5.362430 GCCTACAGGATATCCTTAGAGATGG 59.638 48.000 26.43 19.91 46.09 3.51
2620 2980 5.362430 GGCCTACAGGATATCCTTAGAGATG 59.638 48.000 26.43 17.43 46.09 2.90
2621 2981 5.524535 GGCCTACAGGATATCCTTAGAGAT 58.475 45.833 26.43 12.97 46.09 2.75
2622 2982 4.264442 GGGCCTACAGGATATCCTTAGAGA 60.264 50.000 26.43 12.14 46.09 3.10
2623 2983 4.027437 GGGCCTACAGGATATCCTTAGAG 58.973 52.174 26.43 20.85 46.09 2.43
2624 2984 3.404769 TGGGCCTACAGGATATCCTTAGA 59.595 47.826 26.43 15.22 46.09 2.10
2625 2985 3.791320 TGGGCCTACAGGATATCCTTAG 58.209 50.000 22.29 22.10 46.09 2.18
2626 2986 3.935240 TGGGCCTACAGGATATCCTTA 57.065 47.619 22.29 15.36 46.09 2.69
2627 2987 2.815357 TGGGCCTACAGGATATCCTT 57.185 50.000 22.29 15.06 46.09 3.36
2629 2989 4.202567 TGAAATTGGGCCTACAGGATATCC 60.203 45.833 14.41 14.41 37.39 2.59
2630 2990 4.985538 TGAAATTGGGCCTACAGGATATC 58.014 43.478 4.53 0.00 37.39 1.63
2631 2991 5.402054 TTGAAATTGGGCCTACAGGATAT 57.598 39.130 4.53 0.00 37.39 1.63
2632 2992 4.871871 TTGAAATTGGGCCTACAGGATA 57.128 40.909 4.53 0.00 37.39 2.59
2633 2993 3.756082 TTGAAATTGGGCCTACAGGAT 57.244 42.857 4.53 0.00 37.39 3.24
2634 2994 3.534357 TTTGAAATTGGGCCTACAGGA 57.466 42.857 4.53 0.00 37.39 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.