Multiple sequence alignment - TraesCS3D01G150600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G150600 chr3D 100.000 9217 0 0 1 9217 115033901 115024685 0.000000e+00 17021.0
1 TraesCS3D01G150600 chr3D 97.980 99 1 1 1 98 424002907 424003005 4.430000e-38 171.0
2 TraesCS3D01G150600 chr3D 96.970 99 3 0 1 99 433194011 433193913 5.720000e-37 167.0
3 TraesCS3D01G150600 chr3D 85.034 147 21 1 469 615 55088977 55088832 2.070000e-31 148.0
4 TraesCS3D01G150600 chr3D 86.992 123 14 2 1 122 484729211 484729332 4.490000e-28 137.0
5 TraesCS3D01G150600 chr3B 94.780 7376 298 38 91 7420 168696950 168689616 0.000000e+00 11407.0
6 TraesCS3D01G150600 chr3B 94.351 1310 39 22 7414 8711 168685636 168684350 0.000000e+00 1977.0
7 TraesCS3D01G150600 chr3B 97.835 231 4 1 8933 9162 168683838 168683608 1.860000e-106 398.0
8 TraesCS3D01G150600 chr3B 93.970 199 8 1 8748 8946 168684206 168684012 1.950000e-76 298.0
9 TraesCS3D01G150600 chr3B 100.000 40 0 0 8711 8750 168684270 168684231 3.570000e-09 75.0
10 TraesCS3D01G150600 chr3A 94.150 3607 181 13 3717 7302 111560105 111556508 0.000000e+00 5465.0
11 TraesCS3D01G150600 chr3A 91.583 1093 68 11 7368 8458 111556047 111554977 0.000000e+00 1487.0
12 TraesCS3D01G150600 chr3A 85.656 1234 90 34 917 2102 111564553 111563359 0.000000e+00 1218.0
13 TraesCS3D01G150600 chr3A 91.757 740 48 8 2933 3663 111561388 111560653 0.000000e+00 1016.0
14 TraesCS3D01G150600 chr3A 89.216 612 45 12 2107 2704 111563178 111562574 0.000000e+00 745.0
15 TraesCS3D01G150600 chr3A 86.460 613 55 7 2401 3000 611183021 611183618 0.000000e+00 647.0
16 TraesCS3D01G150600 chr3A 89.485 447 34 6 3051 3491 611183616 611184055 3.760000e-153 553.0
17 TraesCS3D01G150600 chr3A 80.400 250 18 12 644 862 111566275 111566026 2.660000e-35 161.0
18 TraesCS3D01G150600 chr3A 79.821 223 31 11 91 312 111566854 111566645 5.770000e-32 150.0
19 TraesCS3D01G150600 chr3A 86.111 72 2 4 8533 8596 109148681 109148752 4.620000e-08 71.3
20 TraesCS3D01G150600 chr3A 84.932 73 6 2 8533 8600 699881924 699881852 1.660000e-07 69.4
21 TraesCS3D01G150600 chr3A 92.683 41 2 1 7335 7375 700747671 700747710 3.590000e-04 58.4
22 TraesCS3D01G150600 chr5A 89.882 425 35 6 3076 3494 609703853 609703431 2.930000e-149 540.0
23 TraesCS3D01G150600 chr5A 85.759 323 37 4 2679 3000 609704194 609703880 5.330000e-87 333.0
24 TraesCS3D01G150600 chr4D 100.000 94 0 0 1 94 219514442 219514535 3.420000e-39 174.0
25 TraesCS3D01G150600 chr4D 97.938 97 2 0 1 97 151981773 151981869 1.590000e-37 169.0
26 TraesCS3D01G150600 chrUn 97.938 97 2 0 1 97 333880182 333880278 1.590000e-37 169.0
27 TraesCS3D01G150600 chr6D 97.938 97 2 0 1 97 5180334 5180430 1.590000e-37 169.0
28 TraesCS3D01G150600 chr6D 85.417 144 19 2 469 612 468111688 468111829 2.070000e-31 148.0
29 TraesCS3D01G150600 chr7D 92.857 112 6 2 1 111 14654614 14654504 2.660000e-35 161.0
30 TraesCS3D01G150600 chr7D 95.349 43 1 1 8554 8596 358722556 358722515 5.970000e-07 67.6
31 TraesCS3D01G150600 chr4A 86.395 147 19 1 469 615 714205136 714204991 9.580000e-35 159.0
32 TraesCS3D01G150600 chr4A 92.683 41 2 1 7335 7375 686881730 686881691 3.590000e-04 58.4
33 TraesCS3D01G150600 chr1D 86.620 142 13 6 1 137 318666721 318666861 1.600000e-32 152.0
34 TraesCS3D01G150600 chr1D 92.857 42 2 1 7339 7380 77013417 77013457 9.990000e-05 60.2
35 TraesCS3D01G150600 chr5D 85.612 139 19 1 474 612 282374891 282375028 2.680000e-30 145.0
36 TraesCS3D01G150600 chr1A 84.354 147 22 1 469 615 519469192 519469047 9.650000e-30 143.0
37 TraesCS3D01G150600 chr1A 93.333 45 3 0 8554 8598 377018163 377018207 5.970000e-07 67.6
38 TraesCS3D01G150600 chr7B 97.674 43 1 0 8554 8596 242718368 242718326 3.570000e-09 75.0
39 TraesCS3D01G150600 chr7A 95.745 47 1 1 8554 8600 262465910 262465955 3.570000e-09 75.0
40 TraesCS3D01G150600 chr7A 92.683 41 2 1 7335 7375 398924477 398924516 3.590000e-04 58.4
41 TraesCS3D01G150600 chr2A 95.349 43 2 0 7339 7381 509547621 509547579 1.660000e-07 69.4
42 TraesCS3D01G150600 chr2A 92.500 40 3 0 7339 7378 593655945 593655906 3.590000e-04 58.4
43 TraesCS3D01G150600 chr6B 95.000 40 2 0 8557 8596 95494815 95494854 7.730000e-06 63.9
44 TraesCS3D01G150600 chr2D 94.737 38 2 0 8560 8597 81657674 81657637 9.990000e-05 60.2
45 TraesCS3D01G150600 chr2D 94.595 37 2 0 7339 7375 449065547 449065583 3.590000e-04 58.4
46 TraesCS3D01G150600 chr1B 92.683 41 3 0 7339 7379 120657891 120657931 9.990000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G150600 chr3D 115024685 115033901 9216 True 17021.000000 17021 100.000000 1 9217 1 chr3D.!!$R2 9216
1 TraesCS3D01G150600 chr3B 168683608 168696950 13342 True 2831.000000 11407 96.187200 91 9162 5 chr3B.!!$R1 9071
2 TraesCS3D01G150600 chr3A 111554977 111566854 11877 True 1463.142857 5465 87.511857 91 8458 7 chr3A.!!$R2 8367
3 TraesCS3D01G150600 chr3A 611183021 611184055 1034 False 600.000000 647 87.972500 2401 3491 2 chr3A.!!$F3 1090
4 TraesCS3D01G150600 chr5A 609703431 609704194 763 True 436.500000 540 87.820500 2679 3494 2 chr5A.!!$R1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 289 0.252103 TCCTTAGAACCGCCAGACCT 60.252 55.000 0.00 0.00 0.00 3.85 F
1557 3292 0.743345 GCGGCCCGATTTCAGTTACT 60.743 55.000 7.68 0.00 0.00 2.24 F
1601 3338 0.393808 ACTGCGTGTTTGGTTCCAGT 60.394 50.000 0.00 0.00 0.00 4.00 F
1794 3541 1.153229 GCGCCGGGTTCTAGGAATT 60.153 57.895 2.18 0.00 0.00 2.17 F
2228 4161 1.271926 TGGGGCTAAAGGAGTCTTTGC 60.272 52.381 2.05 4.03 42.61 3.68 F
3829 7382 2.354203 GGACAGAGAAAAGGATCACGCT 60.354 50.000 0.00 0.00 0.00 5.07 F
4850 8414 2.954318 AGTTTGTCAAGTGCAGATGCTT 59.046 40.909 6.35 0.00 42.66 3.91 F
5515 9079 0.034896 GGCTCTTCGGACTTGAACCA 59.965 55.000 0.00 0.00 0.00 3.67 F
6356 9920 2.152830 GATTGGAGGATCATGAGCTGC 58.847 52.381 11.34 3.08 36.25 5.25 F
7703 15656 0.602905 ACAGCACACTAAAGGACCGC 60.603 55.000 0.00 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1594 3329 0.036875 CCACCCTGGAAGACTGGAAC 59.963 60.000 0.00 0.0 40.96 3.62 R
3491 6517 1.635663 CTTCGGGCGCAGAAAACGAT 61.636 55.000 10.83 0.0 33.26 3.73 R
3571 6597 4.377021 TGGAGCAGTAACAACACAAGTAG 58.623 43.478 0.00 0.0 0.00 2.57 R
3688 7240 0.253044 ACGGTACCTCAGCAATGCAT 59.747 50.000 10.90 0.0 0.00 3.96 R
3855 7408 1.075050 CCATTCCTATGCCTGGATGCT 59.925 52.381 0.00 0.0 33.09 3.79 R
4938 8502 2.097825 GGTCTCCAGCAGCATCATTTT 58.902 47.619 0.00 0.0 0.00 1.82 R
6494 10058 1.600058 TCTCCAGCAGGATGGGATTT 58.400 50.000 0.00 0.0 44.70 2.17 R
7089 10653 0.598065 GTGGGTTCTTCAATTGCGCT 59.402 50.000 9.73 0.0 0.00 5.92 R
7786 15741 0.946221 CAGTGGACTCGGTTGACTGC 60.946 60.000 0.00 0.0 0.00 4.40 R
9191 17452 0.037160 TGAATGGCTGAAGAGCTGCA 59.963 50.000 1.02 0.0 45.44 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.052759 AGTGTAAATTCACTCATTTTACTTCGT 57.947 29.630 0.00 0.00 44.07 3.85
44 45 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
45 46 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
46 47 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
47 48 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
48 49 8.521176 ACTCATTTTACTTCGTATGTAGTCACT 58.479 33.333 0.00 0.00 0.00 3.41
49 50 9.355215 CTCATTTTACTTCGTATGTAGTCACTT 57.645 33.333 0.00 0.00 0.00 3.16
50 51 9.135843 TCATTTTACTTCGTATGTAGTCACTTG 57.864 33.333 0.00 0.00 0.00 3.16
51 52 8.922676 CATTTTACTTCGTATGTAGTCACTTGT 58.077 33.333 0.00 0.00 0.00 3.16
52 53 8.876275 TTTTACTTCGTATGTAGTCACTTGTT 57.124 30.769 0.00 0.00 0.00 2.83
53 54 7.862741 TTACTTCGTATGTAGTCACTTGTTG 57.137 36.000 0.00 0.00 0.00 3.33
54 55 6.080648 ACTTCGTATGTAGTCACTTGTTGA 57.919 37.500 0.00 0.00 0.00 3.18
55 56 6.509656 ACTTCGTATGTAGTCACTTGTTGAA 58.490 36.000 0.00 0.00 35.39 2.69
56 57 6.982141 ACTTCGTATGTAGTCACTTGTTGAAA 59.018 34.615 0.00 0.00 35.39 2.69
57 58 7.656137 ACTTCGTATGTAGTCACTTGTTGAAAT 59.344 33.333 0.00 0.00 35.39 2.17
58 59 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
59 60 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
60 61 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
61 62 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
62 63 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
63 64 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
64 65 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
65 66 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
66 67 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
67 68 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
68 69 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
69 70 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
70 71 5.827797 ACTTGTTGAAATGCCTAGAAAGACA 59.172 36.000 0.00 0.00 0.00 3.41
71 72 6.321181 ACTTGTTGAAATGCCTAGAAAGACAA 59.679 34.615 0.00 0.00 0.00 3.18
72 73 6.317789 TGTTGAAATGCCTAGAAAGACAAG 57.682 37.500 0.00 0.00 0.00 3.16
73 74 5.827797 TGTTGAAATGCCTAGAAAGACAAGT 59.172 36.000 0.00 0.00 0.00 3.16
74 75 6.995686 TGTTGAAATGCCTAGAAAGACAAGTA 59.004 34.615 0.00 0.00 0.00 2.24
75 76 7.665559 TGTTGAAATGCCTAGAAAGACAAGTAT 59.334 33.333 0.00 0.00 0.00 2.12
76 77 8.515414 GTTGAAATGCCTAGAAAGACAAGTATT 58.485 33.333 0.00 0.00 0.00 1.89
77 78 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
78 79 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
80 81 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
81 82 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
82 83 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
83 84 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
84 85 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
85 86 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
86 87 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
87 88 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
88 89 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
89 90 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
97 98 5.859205 TTTAGGAACGGAGGGAGTATAAC 57.141 43.478 0.00 0.00 0.00 1.89
129 132 7.643569 AAAACATGCATGTAGATATTGTCCA 57.356 32.000 31.55 0.00 40.80 4.02
220 223 9.440773 GCAATAGAAATCCTTTTTCTTTTGGAT 57.559 29.630 21.64 0.00 42.42 3.41
258 261 6.195244 CGAATGTCAGATTTTTAAGCAATCCG 59.805 38.462 6.05 0.00 31.86 4.18
286 289 0.252103 TCCTTAGAACCGCCAGACCT 60.252 55.000 0.00 0.00 0.00 3.85
439 674 2.097466 CGAATGGCAATTCTAGGCGTTT 59.903 45.455 12.04 0.00 40.35 3.60
458 693 4.926832 CGTTTGCCGGGAAATCTTAAAAAT 59.073 37.500 24.64 0.00 0.00 1.82
459 694 5.407084 CGTTTGCCGGGAAATCTTAAAAATT 59.593 36.000 24.64 0.00 0.00 1.82
485 720 2.614983 GTCGGTTTTAAGGCTGTGTTCA 59.385 45.455 0.00 0.00 0.00 3.18
495 731 1.680338 GCTGTGTTCAACAACCCTCT 58.320 50.000 0.00 0.00 38.67 3.69
497 733 2.643551 CTGTGTTCAACAACCCTCTGT 58.356 47.619 0.00 0.00 38.67 3.41
509 745 0.895530 CCCTCTGTTCCTTCGCTACA 59.104 55.000 0.00 0.00 0.00 2.74
513 749 1.202582 TCTGTTCCTTCGCTACAGAGC 59.797 52.381 0.00 0.00 42.31 4.09
603 839 3.108376 AGTTGTAGAGTGGAGGGATTCC 58.892 50.000 0.00 0.00 46.98 3.01
613 849 0.810426 GAGGGATTCCGAACGGCTTC 60.810 60.000 8.48 7.41 38.33 3.86
617 853 2.624636 GGATTCCGAACGGCTTCTAAA 58.375 47.619 8.48 0.00 34.68 1.85
624 860 3.000727 CGAACGGCTTCTAAATGTTCCT 58.999 45.455 0.00 0.00 36.46 3.36
688 926 7.048512 GTGCTAAAGGAAAAGATAGGCTAGAA 58.951 38.462 0.00 0.00 0.00 2.10
689 927 7.225734 GTGCTAAAGGAAAAGATAGGCTAGAAG 59.774 40.741 0.00 0.00 0.00 2.85
690 928 6.203915 GCTAAAGGAAAAGATAGGCTAGAAGC 59.796 42.308 0.00 0.00 41.46 3.86
691 929 5.700402 AAGGAAAAGATAGGCTAGAAGCA 57.300 39.130 0.00 0.00 44.75 3.91
692 930 5.029807 AGGAAAAGATAGGCTAGAAGCAC 57.970 43.478 0.00 0.00 44.75 4.40
693 931 3.804873 GGAAAAGATAGGCTAGAAGCACG 59.195 47.826 0.00 0.00 44.75 5.34
694 932 4.441634 GGAAAAGATAGGCTAGAAGCACGA 60.442 45.833 0.00 0.00 44.75 4.35
696 934 4.314740 AAGATAGGCTAGAAGCACGAAG 57.685 45.455 0.00 0.00 44.75 3.79
792 1060 1.679153 GCAACCCGAGGAAGTGAAAAA 59.321 47.619 0.00 0.00 0.00 1.94
800 1068 4.574828 CCGAGGAAGTGAAAAACAAGAAGA 59.425 41.667 0.00 0.00 0.00 2.87
805 1073 4.907879 AGTGAAAAACAAGAAGAGCCAG 57.092 40.909 0.00 0.00 0.00 4.85
864 1133 4.504916 CCCAGCAGCCTCGACTCG 62.505 72.222 0.00 0.00 0.00 4.18
865 1134 4.504916 CCAGCAGCCTCGACTCGG 62.505 72.222 0.00 0.00 0.00 4.63
885 1169 2.667536 GCATCGGCATCGGCATCT 60.668 61.111 0.00 0.00 43.71 2.90
945 2634 4.587189 CCGCGCCTGCCTACTACC 62.587 72.222 0.00 0.00 38.08 3.18
1126 2826 2.766229 GCCTCCACTCCTCCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
1128 2828 2.443016 CTCCACTCCTCCTCCCCG 60.443 72.222 0.00 0.00 0.00 5.73
1129 2829 4.779733 TCCACTCCTCCTCCCCGC 62.780 72.222 0.00 0.00 0.00 6.13
1292 3006 2.043852 TGAGGACGAGGAGGAGCC 60.044 66.667 0.00 0.00 0.00 4.70
1503 3233 0.752009 AGATCTCGCGGAGTAAGCCA 60.752 55.000 6.13 0.00 0.00 4.75
1521 3251 2.364448 GCTCCCTCCCCTCGTCTT 60.364 66.667 0.00 0.00 0.00 3.01
1524 3254 2.362632 CCCTCCCCTCGTCTTCGT 60.363 66.667 0.00 0.00 38.33 3.85
1526 3261 1.215647 CCTCCCCTCGTCTTCGTTG 59.784 63.158 0.00 0.00 38.33 4.10
1555 3290 1.812093 CGCGGCCCGATTTCAGTTA 60.812 57.895 7.68 0.00 40.02 2.24
1556 3291 1.719709 GCGGCCCGATTTCAGTTAC 59.280 57.895 7.68 0.00 0.00 2.50
1557 3292 0.743345 GCGGCCCGATTTCAGTTACT 60.743 55.000 7.68 0.00 0.00 2.24
1558 3293 1.472026 GCGGCCCGATTTCAGTTACTA 60.472 52.381 7.68 0.00 0.00 1.82
1567 3302 3.984018 TTTCAGTTACTATTCGTGCGC 57.016 42.857 0.00 0.00 0.00 6.09
1586 3321 3.621394 GCTCGATTCCGCGACTGC 61.621 66.667 8.23 0.00 36.17 4.40
1601 3338 0.393808 ACTGCGTGTTTGGTTCCAGT 60.394 50.000 0.00 0.00 0.00 4.00
1609 3346 2.230660 GTTTGGTTCCAGTCTTCCAGG 58.769 52.381 0.00 0.00 0.00 4.45
1630 3367 2.107953 GGATCTGGTGCTCTCCGC 59.892 66.667 0.00 0.00 39.77 5.54
1637 3376 2.881352 GTGCTCTCCGCGTGCTAC 60.881 66.667 4.92 2.13 43.27 3.58
1765 3512 3.884895 TGAGGTGGTTGCATTCGATTAT 58.115 40.909 0.00 0.00 0.00 1.28
1767 3514 3.620488 AGGTGGTTGCATTCGATTATGT 58.380 40.909 0.00 0.00 0.00 2.29
1794 3541 1.153229 GCGCCGGGTTCTAGGAATT 60.153 57.895 2.18 0.00 0.00 2.17
1825 3572 2.050351 CGCTCGCCGGTTATCGAT 60.050 61.111 1.90 2.16 42.43 3.59
1829 3576 1.454653 GCTCGCCGGTTATCGATAAAC 59.545 52.381 21.03 21.03 42.43 2.01
1840 3587 2.472695 TCGATAAACCAGCAGTGCTT 57.527 45.000 16.89 3.15 36.40 3.91
1902 3649 4.671250 GCTTTTGAGCTCATTTTCCGAGAG 60.671 45.833 19.04 6.38 31.84 3.20
1905 3652 3.092301 TGAGCTCATTTTCCGAGAGAGA 58.908 45.455 13.74 0.00 31.84 3.10
1938 3685 2.095415 GTCGGGTAGAACCAAATTGTGC 60.095 50.000 0.00 0.00 41.02 4.57
1949 3696 2.549754 CCAAATTGTGCGTCTTCAGAGT 59.450 45.455 0.00 0.00 0.00 3.24
2020 3767 3.238597 AGGTTTTTGGAGGCATGCTTTA 58.761 40.909 18.92 0.16 0.00 1.85
2036 3790 6.350110 GCATGCTTTACTGAATTGGTAGGAAA 60.350 38.462 11.37 0.00 0.00 3.13
2068 3822 5.179452 AGTCTAGGTATGCCATGTTTTGT 57.821 39.130 1.54 0.00 37.19 2.83
2138 4068 7.482654 TTTTCTTTGTGATGTAGACTGTCAG 57.517 36.000 10.88 0.00 0.00 3.51
2203 4136 8.131731 TGAGTGAATTCGTAGATATCTTGTGAG 58.868 37.037 11.25 0.00 35.04 3.51
2228 4161 1.271926 TGGGGCTAAAGGAGTCTTTGC 60.272 52.381 2.05 4.03 42.61 3.68
2231 4164 3.536570 GGGCTAAAGGAGTCTTTGCTAG 58.463 50.000 2.05 0.00 42.61 3.42
2234 4167 4.632251 GGCTAAAGGAGTCTTTGCTAGTTC 59.368 45.833 2.05 0.00 42.61 3.01
2299 4232 4.084589 TGTTGATCGAAAACTGTCATCACG 60.085 41.667 13.55 0.00 0.00 4.35
2399 4343 5.771165 TGCCATATGCTTATGACAATGTCAT 59.229 36.000 28.78 28.78 46.78 3.06
2418 4362 7.870509 TGTCATAATTGATCTGCTAGCTTTT 57.129 32.000 17.23 0.00 33.56 2.27
2449 4393 7.667635 GGCTTAAGGAATGCTATAAATCCTCTT 59.332 37.037 4.29 0.00 41.39 2.85
2509 4454 6.169094 CGCCTGAGATATTCTTTGGTCATAT 58.831 40.000 0.00 0.00 0.00 1.78
2721 5732 9.772973 ACTATACATGTGTTCACAAGTAGAAAA 57.227 29.630 20.09 5.56 0.00 2.29
2833 5844 9.959721 AGTGTATTGATAGTATTTGAAGTTGGT 57.040 29.630 0.00 0.00 0.00 3.67
2884 5895 5.688807 AGTATTAGCAGTGGCAATCTGAAT 58.311 37.500 9.12 3.95 44.61 2.57
3013 6024 2.780010 AGTCCTGGCTGGCAGTAATAAT 59.220 45.455 26.72 8.49 35.26 1.28
3169 6188 5.135383 TGCTAATTAAATGCAGGCTCTGAT 58.865 37.500 6.40 0.00 32.44 2.90
3324 6344 9.914923 GTTTTCTTATTTTTCAAGCGATTTTGT 57.085 25.926 0.00 0.00 0.00 2.83
3504 6530 4.962151 GGTTCTATTTATCGTTTTCTGCGC 59.038 41.667 0.00 0.00 0.00 6.09
3524 6550 3.733337 GCCCGAAGATCAATGTCTATGT 58.267 45.455 0.00 0.00 0.00 2.29
3571 6597 6.583806 CAGGCACAACTAACTTCAAATCAATC 59.416 38.462 0.00 0.00 0.00 2.67
3634 6660 6.061441 TGCCAACCATTATGTACTAATCTGG 58.939 40.000 0.00 0.00 30.73 3.86
3688 7240 7.994425 TCCACATCAAGTCTTTATTGCTAAA 57.006 32.000 0.00 0.00 0.00 1.85
3690 7242 8.461222 TCCACATCAAGTCTTTATTGCTAAATG 58.539 33.333 0.00 0.00 0.00 2.32
3829 7382 2.354203 GGACAGAGAAAAGGATCACGCT 60.354 50.000 0.00 0.00 0.00 5.07
3935 7488 4.037923 CAGCAGGTTTTACACACAAATCCT 59.962 41.667 0.00 0.00 37.86 3.24
3986 7539 8.731275 ATATGTTTTCATCGTCCATGACTTTA 57.269 30.769 0.00 0.00 41.56 1.85
4165 7723 4.215399 TCTTCATTTAGTTCAAAGGCACGG 59.785 41.667 0.00 0.00 0.00 4.94
4195 7753 2.995939 TGCAGAACAAGCTTCAGATACG 59.004 45.455 0.00 0.00 0.00 3.06
4226 7784 6.194967 TCTGTAGTTCCTCATGAGAATGGTA 58.805 40.000 24.62 6.05 0.00 3.25
4326 7884 3.740631 TGATCTGGGTGATGATTCGAG 57.259 47.619 0.00 0.00 35.14 4.04
4819 8383 8.220755 TGTTACATACTTTTGAAAGAACTGCT 57.779 30.769 10.26 0.00 39.31 4.24
4850 8414 2.954318 AGTTTGTCAAGTGCAGATGCTT 59.046 40.909 6.35 0.00 42.66 3.91
4938 8502 4.047166 ACCACCATCCCTGAGAATAATGA 58.953 43.478 0.00 0.00 0.00 2.57
4983 8547 1.611491 TGAAATTTCAGAACCGGCACC 59.389 47.619 16.91 0.00 32.50 5.01
5012 8576 2.779755 TACAGCTACACCACCCAATG 57.220 50.000 0.00 0.00 0.00 2.82
5017 8581 1.818674 GCTACACCACCCAATGAAAGG 59.181 52.381 0.00 0.00 0.00 3.11
5018 8582 2.817839 GCTACACCACCCAATGAAAGGT 60.818 50.000 0.00 0.00 36.58 3.50
5188 8752 3.027412 AGATGCGTCAGAAGATGGTACT 58.973 45.455 8.99 0.00 0.00 2.73
5199 8763 5.413833 CAGAAGATGGTACTGTTGAAAGCAT 59.586 40.000 0.00 0.00 34.25 3.79
5214 8778 7.066404 TGTTGAAAGCATTAGTTGTCTTGTACA 59.934 33.333 0.00 0.00 35.88 2.90
5250 8814 2.039084 CCTTTGCTCCAACTAGTGAGGT 59.961 50.000 12.84 0.00 0.00 3.85
5286 8850 2.500098 TCTTACCTGGTGATACCACTGC 59.500 50.000 10.23 0.00 44.79 4.40
5515 9079 0.034896 GGCTCTTCGGACTTGAACCA 59.965 55.000 0.00 0.00 0.00 3.67
5664 9228 2.433838 CGAGCACAGGGAGCACAG 60.434 66.667 0.00 0.00 0.00 3.66
5701 9265 4.077822 AGCAAGCTTCAATAAGTGAGCTT 58.922 39.130 0.00 3.79 44.53 3.74
5948 9512 4.773323 AATTCTACTCTTGCACCAAAGC 57.227 40.909 0.00 0.00 0.00 3.51
5962 9526 4.813027 CACCAAAGCAAGCAGTATTTGAT 58.187 39.130 6.19 0.00 35.19 2.57
6151 9715 3.201487 TCTCTGATGGCAACCTTCATGAT 59.799 43.478 0.00 0.00 37.13 2.45
6259 9823 6.879400 AGATGACACCTTTGGTAGATCTTAC 58.121 40.000 0.00 0.00 32.11 2.34
6289 9853 5.970592 TCTTCATATGATGATCTAAGCCCG 58.029 41.667 15.39 0.00 39.39 6.13
6356 9920 2.152830 GATTGGAGGATCATGAGCTGC 58.847 52.381 11.34 3.08 36.25 5.25
6494 10058 3.382227 TCATAATGGACTCGGCTCGTTAA 59.618 43.478 0.00 0.00 0.00 2.01
6676 10240 5.690865 ACAATGAGACAAACAACTTCCCTA 58.309 37.500 0.00 0.00 0.00 3.53
6831 10395 7.255381 GGAAGTGGTAAGACTTAACCCTTTTTC 60.255 40.741 9.06 5.52 36.27 2.29
6844 10408 5.245584 ACCCTTTTTCGAATACCTTGGTA 57.754 39.130 0.00 1.65 0.00 3.25
6870 10434 7.386059 TCAGTTGTCATTGTAATCTCTTGCTA 58.614 34.615 0.00 0.00 0.00 3.49
7003 10567 3.838565 TCAGGGATAAGGTTTGTTTGCA 58.161 40.909 0.00 0.00 0.00 4.08
7137 10709 1.133482 CCCCAGTCTGGAAGTTGGTTT 60.133 52.381 21.23 0.00 40.96 3.27
7292 10864 7.688372 AGTGAGTTCGCATTTTATGTTCATAG 58.312 34.615 0.00 0.00 0.00 2.23
7702 15655 1.148310 CACAGCACACTAAAGGACCG 58.852 55.000 0.00 0.00 0.00 4.79
7703 15656 0.602905 ACAGCACACTAAAGGACCGC 60.603 55.000 0.00 0.00 0.00 5.68
7786 15741 4.806247 GGATCTAAGACAAACACCTCATCG 59.194 45.833 0.00 0.00 0.00 3.84
8174 16134 8.230472 AGAGATGTTAAATCATTTCCACATCC 57.770 34.615 21.52 16.15 40.71 3.51
8256 16216 7.250569 TGTTTAGCTATCTTTTGTAGCATTGC 58.749 34.615 0.00 0.00 45.41 3.56
8432 16398 5.975939 GCAAAATCTAAATCAGGAGATGCAC 59.024 40.000 0.00 0.00 33.90 4.57
8496 16462 8.806429 TTCCTTCATGTTAGAAATCATTAGCA 57.194 30.769 0.00 0.00 0.00 3.49
8497 16463 8.806429 TCCTTCATGTTAGAAATCATTAGCAA 57.194 30.769 0.00 0.00 0.00 3.91
8498 16464 8.896744 TCCTTCATGTTAGAAATCATTAGCAAG 58.103 33.333 0.00 0.00 0.00 4.01
8499 16465 7.646922 CCTTCATGTTAGAAATCATTAGCAAGC 59.353 37.037 0.00 0.00 0.00 4.01
8500 16466 7.628769 TCATGTTAGAAATCATTAGCAAGCA 57.371 32.000 0.00 0.00 0.00 3.91
8501 16467 8.229253 TCATGTTAGAAATCATTAGCAAGCAT 57.771 30.769 0.00 0.00 0.00 3.79
8502 16468 8.132995 TCATGTTAGAAATCATTAGCAAGCATG 58.867 33.333 0.00 0.00 0.00 4.06
8503 16469 7.395190 TGTTAGAAATCATTAGCAAGCATGT 57.605 32.000 0.00 0.00 0.00 3.21
8504 16470 8.504812 TGTTAGAAATCATTAGCAAGCATGTA 57.495 30.769 0.00 0.00 0.00 2.29
8505 16471 8.615211 TGTTAGAAATCATTAGCAAGCATGTAG 58.385 33.333 0.00 0.00 0.00 2.74
8506 16472 8.616076 GTTAGAAATCATTAGCAAGCATGTAGT 58.384 33.333 0.00 0.00 0.00 2.73
8507 16473 9.830975 TTAGAAATCATTAGCAAGCATGTAGTA 57.169 29.630 0.00 0.00 0.00 1.82
8522 16488 8.012957 AGCATGTAGTAAGTAAGAGTTAGCAT 57.987 34.615 0.00 0.00 0.00 3.79
8577 16543 4.842574 TGTGTAGAGGCTGCATCAATTAA 58.157 39.130 17.19 0.00 0.00 1.40
8697 16664 7.977789 TTTGTAAGAGATGTGCAACTGAATA 57.022 32.000 0.00 0.00 38.04 1.75
8700 16667 6.813649 TGTAAGAGATGTGCAACTGAATACTC 59.186 38.462 0.00 0.00 38.04 2.59
8701 16668 5.411831 AGAGATGTGCAACTGAATACTCA 57.588 39.130 0.00 0.00 38.04 3.41
8702 16669 5.987098 AGAGATGTGCAACTGAATACTCAT 58.013 37.500 0.00 0.00 38.04 2.90
8705 16672 3.609853 TGTGCAACTGAATACTCATCCC 58.390 45.455 0.00 0.00 38.04 3.85
8706 16673 3.264193 TGTGCAACTGAATACTCATCCCT 59.736 43.478 0.00 0.00 38.04 4.20
8707 16674 4.469586 TGTGCAACTGAATACTCATCCCTA 59.530 41.667 0.00 0.00 38.04 3.53
8708 16675 4.811557 GTGCAACTGAATACTCATCCCTAC 59.188 45.833 0.00 0.00 0.00 3.18
8709 16676 4.716784 TGCAACTGAATACTCATCCCTACT 59.283 41.667 0.00 0.00 0.00 2.57
8755 16828 5.852229 CGGATCTTCTTAGTTCGTAGTATGC 59.148 44.000 0.00 0.00 0.00 3.14
8784 16857 2.802247 GTTGGCATTGCACTTTCCTTTC 59.198 45.455 11.39 0.00 0.00 2.62
8791 16864 0.900182 GCACTTTCCTTTCCTGGGGG 60.900 60.000 0.00 0.00 0.00 5.40
8792 16865 0.777446 CACTTTCCTTTCCTGGGGGA 59.223 55.000 0.00 0.00 40.36 4.81
8795 16868 2.043115 ACTTTCCTTTCCTGGGGGATTC 59.957 50.000 0.00 0.00 41.87 2.52
8821 16894 8.789762 CAGAGATGGTAATGCATATTTTGATGA 58.210 33.333 0.00 0.00 0.00 2.92
8822 16895 9.529823 AGAGATGGTAATGCATATTTTGATGAT 57.470 29.630 0.00 0.00 0.00 2.45
8859 16932 5.109903 GCCGTTGTTATAAGACTGATCTGT 58.890 41.667 4.73 4.73 34.48 3.41
8969 17230 2.017049 AGATACCAATTGAAGCGGCAC 58.983 47.619 7.12 0.00 0.00 5.01
9052 17313 4.541779 CCATTTTTGTGAATTTCCGACGA 58.458 39.130 0.00 0.00 0.00 4.20
9088 17349 8.492673 TGGTTGCATCTACTAGTTTTTATCAG 57.507 34.615 0.00 0.00 0.00 2.90
9124 17385 1.548719 TGTCAATACTGTCACGGAGGG 59.451 52.381 0.00 0.00 0.00 4.30
9162 17423 1.446907 CATGTCTCTGTTGGTCCAGC 58.553 55.000 0.00 0.00 32.32 4.85
9163 17424 0.036952 ATGTCTCTGTTGGTCCAGCG 60.037 55.000 0.83 0.00 32.32 5.18
9164 17425 2.029844 GTCTCTGTTGGTCCAGCGC 61.030 63.158 0.00 0.00 32.32 5.92
9165 17426 3.114616 CTCTGTTGGTCCAGCGCG 61.115 66.667 0.00 0.00 32.32 6.86
9169 17430 4.683334 GTTGGTCCAGCGCGCAAC 62.683 66.667 35.10 25.92 0.00 4.17
9172 17433 3.737172 GGTCCAGCGCGCAACATT 61.737 61.111 35.10 9.38 0.00 2.71
9173 17434 2.202349 GTCCAGCGCGCAACATTC 60.202 61.111 35.10 14.13 0.00 2.67
9174 17435 3.430862 TCCAGCGCGCAACATTCC 61.431 61.111 35.10 0.00 0.00 3.01
9175 17436 3.736100 CCAGCGCGCAACATTCCA 61.736 61.111 35.10 0.00 0.00 3.53
9176 17437 2.502510 CAGCGCGCAACATTCCAC 60.503 61.111 35.10 0.00 0.00 4.02
9177 17438 2.977456 AGCGCGCAACATTCCACA 60.977 55.556 35.10 0.00 0.00 4.17
9178 17439 2.800746 GCGCGCAACATTCCACAC 60.801 61.111 29.10 0.00 0.00 3.82
9179 17440 2.126888 CGCGCAACATTCCACACC 60.127 61.111 8.75 0.00 0.00 4.16
9180 17441 2.902419 CGCGCAACATTCCACACCA 61.902 57.895 8.75 0.00 0.00 4.17
9181 17442 1.081242 GCGCAACATTCCACACCAG 60.081 57.895 0.30 0.00 0.00 4.00
9182 17443 1.514678 GCGCAACATTCCACACCAGA 61.515 55.000 0.30 0.00 0.00 3.86
9183 17444 0.950836 CGCAACATTCCACACCAGAA 59.049 50.000 0.00 0.00 0.00 3.02
9184 17445 1.336440 CGCAACATTCCACACCAGAAA 59.664 47.619 0.00 0.00 0.00 2.52
9185 17446 2.742774 GCAACATTCCACACCAGAAAC 58.257 47.619 0.00 0.00 0.00 2.78
9186 17447 2.545742 GCAACATTCCACACCAGAAACC 60.546 50.000 0.00 0.00 0.00 3.27
9187 17448 2.692557 CAACATTCCACACCAGAAACCA 59.307 45.455 0.00 0.00 0.00 3.67
9188 17449 2.586425 ACATTCCACACCAGAAACCAG 58.414 47.619 0.00 0.00 0.00 4.00
9189 17450 2.091885 ACATTCCACACCAGAAACCAGT 60.092 45.455 0.00 0.00 0.00 4.00
9190 17451 2.341846 TTCCACACCAGAAACCAGTC 57.658 50.000 0.00 0.00 0.00 3.51
9191 17452 1.507140 TCCACACCAGAAACCAGTCT 58.493 50.000 0.00 0.00 0.00 3.24
9192 17453 1.140852 TCCACACCAGAAACCAGTCTG 59.859 52.381 0.00 0.00 43.98 3.51
9193 17454 0.947244 CACACCAGAAACCAGTCTGC 59.053 55.000 0.00 0.00 43.18 4.26
9194 17455 0.546122 ACACCAGAAACCAGTCTGCA 59.454 50.000 0.00 0.00 43.18 4.41
9195 17456 1.233019 CACCAGAAACCAGTCTGCAG 58.767 55.000 7.63 7.63 43.18 4.41
9196 17457 0.536006 ACCAGAAACCAGTCTGCAGC 60.536 55.000 9.47 4.26 43.18 5.25
9197 17458 0.250640 CCAGAAACCAGTCTGCAGCT 60.251 55.000 9.47 6.85 43.18 4.24
9198 17459 1.155042 CAGAAACCAGTCTGCAGCTC 58.845 55.000 9.47 4.66 38.74 4.09
9199 17460 1.055040 AGAAACCAGTCTGCAGCTCT 58.945 50.000 9.47 7.14 0.00 4.09
9200 17461 1.419387 AGAAACCAGTCTGCAGCTCTT 59.581 47.619 9.47 3.07 0.00 2.85
9201 17462 1.803555 GAAACCAGTCTGCAGCTCTTC 59.196 52.381 9.47 8.22 0.00 2.87
9202 17463 0.761187 AACCAGTCTGCAGCTCTTCA 59.239 50.000 9.47 0.00 0.00 3.02
9203 17464 0.321021 ACCAGTCTGCAGCTCTTCAG 59.679 55.000 9.47 4.17 0.00 3.02
9214 17475 2.274920 GCTCTTCAGCCATTCAAAGC 57.725 50.000 0.00 0.00 40.14 3.51
9215 17476 1.467035 GCTCTTCAGCCATTCAAAGCG 60.467 52.381 0.00 0.00 40.14 4.68
9216 17477 1.808945 CTCTTCAGCCATTCAAAGCGT 59.191 47.619 0.00 0.00 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.136800 TTCAACAAGTGACTACATACGAAGTAA 58.863 33.333 0.00 0.00 41.03 2.24
30 31 7.650890 TTCAACAAGTGACTACATACGAAGTA 58.349 34.615 0.00 0.00 41.66 2.24
31 32 6.509656 TTCAACAAGTGACTACATACGAAGT 58.490 36.000 0.00 0.00 39.84 3.01
32 33 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
33 34 7.570507 GCATTTCAACAAGTGACTACATACGAA 60.571 37.037 0.00 0.00 35.39 3.85
34 35 6.128661 GCATTTCAACAAGTGACTACATACGA 60.129 38.462 0.00 0.00 35.39 3.43
35 36 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
36 37 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
37 38 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
38 39 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
39 40 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
40 41 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
41 42 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
42 43 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
43 44 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
44 45 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
45 46 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
46 47 5.827797 TGTCTTTCTAGGCATTTCAACAAGT 59.172 36.000 0.00 0.00 29.10 3.16
47 48 6.317789 TGTCTTTCTAGGCATTTCAACAAG 57.682 37.500 0.00 0.00 29.10 3.16
48 49 6.321181 ACTTGTCTTTCTAGGCATTTCAACAA 59.679 34.615 0.00 0.00 35.56 2.83
49 50 5.827797 ACTTGTCTTTCTAGGCATTTCAACA 59.172 36.000 0.00 0.00 35.56 3.33
50 51 6.319141 ACTTGTCTTTCTAGGCATTTCAAC 57.681 37.500 0.00 0.00 35.56 3.18
51 52 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
52 53 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
54 55 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
55 56 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
56 57 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
57 58 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
58 59 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
59 60 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
60 61 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
61 62 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
62 63 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
63 64 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
64 65 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
65 66 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
66 67 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
67 68 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
68 69 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
69 70 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
70 71 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
71 72 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
72 73 7.374272 GTTATACTCCCTCCGTTCCTAAATAC 58.626 42.308 0.00 0.00 0.00 1.89
73 74 6.494835 GGTTATACTCCCTCCGTTCCTAAATA 59.505 42.308 0.00 0.00 0.00 1.40
74 75 5.306419 GGTTATACTCCCTCCGTTCCTAAAT 59.694 44.000 0.00 0.00 0.00 1.40
75 76 4.651045 GGTTATACTCCCTCCGTTCCTAAA 59.349 45.833 0.00 0.00 0.00 1.85
76 77 4.218312 GGTTATACTCCCTCCGTTCCTAA 58.782 47.826 0.00 0.00 0.00 2.69
77 78 3.205056 TGGTTATACTCCCTCCGTTCCTA 59.795 47.826 0.00 0.00 0.00 2.94
78 79 2.023695 TGGTTATACTCCCTCCGTTCCT 60.024 50.000 0.00 0.00 0.00 3.36
79 80 2.391678 TGGTTATACTCCCTCCGTTCC 58.608 52.381 0.00 0.00 0.00 3.62
80 81 4.439968 CTTTGGTTATACTCCCTCCGTTC 58.560 47.826 0.00 0.00 0.00 3.95
81 82 3.199289 CCTTTGGTTATACTCCCTCCGTT 59.801 47.826 0.00 0.00 0.00 4.44
82 83 2.770232 CCTTTGGTTATACTCCCTCCGT 59.230 50.000 0.00 0.00 0.00 4.69
83 84 3.036091 TCCTTTGGTTATACTCCCTCCG 58.964 50.000 0.00 0.00 0.00 4.63
84 85 5.446260 TTTCCTTTGGTTATACTCCCTCC 57.554 43.478 0.00 0.00 0.00 4.30
85 86 6.717997 TGTTTTTCCTTTGGTTATACTCCCTC 59.282 38.462 0.00 0.00 0.00 4.30
86 87 6.616577 TGTTTTTCCTTTGGTTATACTCCCT 58.383 36.000 0.00 0.00 0.00 4.20
87 88 6.904463 TGTTTTTCCTTTGGTTATACTCCC 57.096 37.500 0.00 0.00 0.00 4.30
88 89 6.811665 GCATGTTTTTCCTTTGGTTATACTCC 59.188 38.462 0.00 0.00 0.00 3.85
89 90 7.375053 TGCATGTTTTTCCTTTGGTTATACTC 58.625 34.615 0.00 0.00 0.00 2.59
97 98 5.782047 TCTACATGCATGTTTTTCCTTTGG 58.218 37.500 35.45 11.03 41.97 3.28
129 132 8.799367 ACTACAGTTGGTCTTTTAAAACTTTGT 58.201 29.630 0.00 0.00 30.59 2.83
220 223 0.036164 ACATTCGCTGGTTAGTGGCA 59.964 50.000 0.00 0.00 35.14 4.92
258 261 1.725164 CGGTTCTAAGGACGTTTGCTC 59.275 52.381 0.00 0.00 0.00 4.26
286 289 1.240641 AATTGCCATGCGTTCGACCA 61.241 50.000 0.00 0.00 0.00 4.02
339 342 6.449635 AAGAAAATCGCCATGTAGCATAAA 57.550 33.333 0.00 0.00 0.00 1.40
413 648 4.498009 CGCCTAGAATTGCCATTCGAAAAT 60.498 41.667 0.00 0.00 43.38 1.82
420 655 2.417243 GCAAACGCCTAGAATTGCCATT 60.417 45.455 9.29 0.00 38.93 3.16
439 674 6.403855 CGTCTAATTTTTAAGATTTCCCGGCA 60.404 38.462 0.00 0.00 0.00 5.69
442 677 6.898189 CGACGTCTAATTTTTAAGATTTCCCG 59.102 38.462 14.70 0.00 0.00 5.14
458 693 3.243839 ACAGCCTTAAAACCGACGTCTAA 60.244 43.478 14.70 4.10 0.00 2.10
459 694 2.297033 ACAGCCTTAAAACCGACGTCTA 59.703 45.455 14.70 0.00 0.00 2.59
485 720 1.814248 GCGAAGGAACAGAGGGTTGTT 60.814 52.381 0.00 0.00 43.61 2.83
495 731 3.814577 GCTCTGTAGCGAAGGAACA 57.185 52.632 0.00 0.00 39.39 3.18
587 823 2.385803 GTTCGGAATCCCTCCACTCTA 58.614 52.381 0.00 0.00 45.74 2.43
603 839 3.000727 AGGAACATTTAGAAGCCGTTCG 58.999 45.455 0.00 0.00 37.44 3.95
613 849 9.927668 ACACAAAATGGAAATAGGAACATTTAG 57.072 29.630 0.00 0.00 41.24 1.85
617 853 7.301868 ACACACAAAATGGAAATAGGAACAT 57.698 32.000 0.00 0.00 0.00 2.71
636 872 7.438564 AGGGTTTCAATGGTATTTTTACACAC 58.561 34.615 0.00 0.00 0.00 3.82
638 874 7.929245 ACAAGGGTTTCAATGGTATTTTTACAC 59.071 33.333 0.00 0.00 0.00 2.90
792 1060 1.302033 CGTGGCTGGCTCTTCTTGT 60.302 57.895 2.00 0.00 0.00 3.16
867 1136 2.786539 TAGATGCCGATGCCGATGCC 62.787 60.000 0.00 0.00 38.22 4.40
868 1137 1.357258 CTAGATGCCGATGCCGATGC 61.357 60.000 0.00 0.00 38.22 3.91
885 1169 1.609501 AGGCTCGACTTGGGTGCTA 60.610 57.895 0.00 0.00 0.00 3.49
890 1174 2.125350 GCTCAGGCTCGACTTGGG 60.125 66.667 0.00 0.00 35.22 4.12
909 1193 1.678101 GGCCTGGTGTGATTATGCTTC 59.322 52.381 0.00 0.00 0.00 3.86
910 1194 1.767759 GGCCTGGTGTGATTATGCTT 58.232 50.000 0.00 0.00 0.00 3.91
1292 3006 4.899239 GGCATCTCCACCGAGCGG 62.899 72.222 7.48 7.48 42.03 5.52
1503 3233 2.864770 GAAGACGAGGGGAGGGAGCT 62.865 65.000 0.00 0.00 0.00 4.09
1542 3277 4.025979 GCACGAATAGTAACTGAAATCGGG 60.026 45.833 0.00 0.00 35.48 5.14
1544 3279 4.737598 CGCACGAATAGTAACTGAAATCG 58.262 43.478 0.00 0.00 35.16 3.34
1555 3290 2.582498 GAGCCGCGCACGAATAGT 60.582 61.111 8.75 0.00 43.93 2.12
1556 3291 3.682315 CGAGCCGCGCACGAATAG 61.682 66.667 8.75 0.00 44.57 1.73
1557 3292 4.182315 TCGAGCCGCGCACGAATA 62.182 61.111 17.00 0.08 46.83 1.75
1583 3318 0.307760 GACTGGAACCAAACACGCAG 59.692 55.000 0.00 0.00 0.00 5.18
1586 3321 1.602377 GGAAGACTGGAACCAAACACG 59.398 52.381 0.00 0.00 0.00 4.49
1591 3326 0.771127 CCCTGGAAGACTGGAACCAA 59.229 55.000 0.00 0.00 40.42 3.67
1594 3329 0.036875 CCACCCTGGAAGACTGGAAC 59.963 60.000 0.00 0.00 40.96 3.62
1601 3338 3.012153 CAGATCCCACCCTGGAAGA 57.988 57.895 0.00 0.00 40.96 2.87
1609 3346 1.524482 GAGAGCACCAGATCCCACC 59.476 63.158 0.00 0.00 0.00 4.61
1630 3367 2.867472 CCCGCCAAAAGTAGCACG 59.133 61.111 0.00 0.00 0.00 5.34
1765 3512 2.125552 CCGGCGCTCAATCTCACA 60.126 61.111 7.64 0.00 0.00 3.58
1767 3514 2.852495 GAACCCGGCGCTCAATCTCA 62.852 60.000 7.64 0.00 0.00 3.27
1825 3572 1.896220 CAGGAAGCACTGCTGGTTTA 58.104 50.000 3.73 0.00 39.73 2.01
1902 3649 2.438392 ACCCGACCCAATCCTAATTCTC 59.562 50.000 0.00 0.00 0.00 2.87
1905 3652 3.660959 TCTACCCGACCCAATCCTAATT 58.339 45.455 0.00 0.00 0.00 1.40
1938 3685 4.029704 GCTCGTATAACACTCTGAAGACG 58.970 47.826 0.00 0.00 0.00 4.18
1949 3696 9.511272 TGATTATAGAGGTTAGCTCGTATAACA 57.489 33.333 17.09 14.98 35.30 2.41
2020 3767 7.182060 ACACCAATATTTCCTACCAATTCAGT 58.818 34.615 0.00 0.00 0.00 3.41
2036 3790 6.082031 TGGCATACCTAGACTACACCAATAT 58.918 40.000 0.00 0.00 36.63 1.28
2068 3822 6.823286 TTCATCCTAACATGGGATCTTACA 57.177 37.500 0.00 0.00 41.17 2.41
2113 4043 7.716998 ACTGACAGTCTACATCACAAAGAAAAT 59.283 33.333 1.07 0.00 0.00 1.82
2136 4066 7.359598 CGTCTAGAACAGGAATTTTTCAGACTG 60.360 40.741 0.00 0.00 31.87 3.51
2138 4068 6.128526 CCGTCTAGAACAGGAATTTTTCAGAC 60.129 42.308 0.00 0.00 31.34 3.51
2228 4161 4.335315 TGGAAACACTTGCACAAGAACTAG 59.665 41.667 16.95 4.27 41.42 2.57
2231 4164 3.502191 TGGAAACACTTGCACAAGAAC 57.498 42.857 16.95 3.72 41.42 3.01
2299 4232 4.759516 TCGTAAAAATGACTTCCCAAGC 57.240 40.909 0.00 0.00 0.00 4.01
2399 4343 7.201732 GCCAACTAAAAGCTAGCAGATCAATTA 60.202 37.037 18.83 4.43 0.00 1.40
2418 4362 9.284968 GATTTATAGCATTCCTTAAGCCAACTA 57.715 33.333 0.00 0.00 0.00 2.24
2509 4454 1.825090 AACATCTGCCGCAAATCTGA 58.175 45.000 0.00 0.00 0.00 3.27
2721 5732 8.794335 AAGAATCCTTAGCTCGTTTTTCTATT 57.206 30.769 0.00 0.00 0.00 1.73
2771 5782 5.830991 GTGGGAACTACATATGGGCAAAATA 59.169 40.000 7.80 0.00 0.00 1.40
2785 5796 7.763071 ACACTTCGATAAATTAGTGGGAACTAC 59.237 37.037 15.15 0.00 41.69 2.73
2822 5833 5.913137 AGTCAACATCAACCAACTTCAAA 57.087 34.783 0.00 0.00 0.00 2.69
2858 5869 4.272018 CAGATTGCCACTGCTAATACTCAC 59.728 45.833 0.00 0.00 38.71 3.51
2884 5895 5.407407 TTGTTTTGTAAGTTTGCCCTGAA 57.593 34.783 0.00 0.00 0.00 3.02
3169 6188 3.667497 TTTTGAAGTTGTGTGTGCCAA 57.333 38.095 0.00 0.00 0.00 4.52
3306 6326 9.906660 TTAGATACACAAAATCGCTTGAAAAAT 57.093 25.926 0.00 0.00 0.00 1.82
3311 6331 7.333174 TCATGTTAGATACACAAAATCGCTTGA 59.667 33.333 0.00 0.00 40.19 3.02
3491 6517 1.635663 CTTCGGGCGCAGAAAACGAT 61.636 55.000 10.83 0.00 33.26 3.73
3504 6530 6.754209 GCTATACATAGACATTGATCTTCGGG 59.246 42.308 0.30 0.00 32.05 5.14
3524 6550 9.706691 GCCTGTGTATTGACTAAAATAGCTATA 57.293 33.333 6.68 0.00 0.00 1.31
3571 6597 4.377021 TGGAGCAGTAACAACACAAGTAG 58.623 43.478 0.00 0.00 0.00 2.57
3645 6671 8.780846 ATGTGGATTAAATAACAGTGTTCGTA 57.219 30.769 12.82 0.52 0.00 3.43
3646 6672 7.389330 TGATGTGGATTAAATAACAGTGTTCGT 59.611 33.333 12.82 0.00 0.00 3.85
3647 6673 7.747888 TGATGTGGATTAAATAACAGTGTTCG 58.252 34.615 12.82 0.00 0.00 3.95
3648 6674 9.559958 CTTGATGTGGATTAAATAACAGTGTTC 57.440 33.333 12.82 0.00 0.00 3.18
3649 6675 9.077885 ACTTGATGTGGATTAAATAACAGTGTT 57.922 29.630 14.05 14.05 0.00 3.32
3650 6676 8.635765 ACTTGATGTGGATTAAATAACAGTGT 57.364 30.769 0.00 0.00 0.00 3.55
3688 7240 0.253044 ACGGTACCTCAGCAATGCAT 59.747 50.000 10.90 0.00 0.00 3.96
3690 7242 1.982073 GCACGGTACCTCAGCAATGC 61.982 60.000 10.90 0.00 31.55 3.56
3701 7253 4.024048 CCATCCAATAATGAAGCACGGTAC 60.024 45.833 0.00 0.00 0.00 3.34
3855 7408 1.075050 CCATTCCTATGCCTGGATGCT 59.925 52.381 0.00 0.00 33.09 3.79
3856 7409 1.202976 ACCATTCCTATGCCTGGATGC 60.203 52.381 0.00 0.00 33.09 3.91
3935 7488 4.447724 GCAGTTGTTGTATCTTCGAGTTCA 59.552 41.667 0.00 0.00 0.00 3.18
4165 7723 2.122564 GCTTGTTCTGCAAAACTCAGC 58.877 47.619 10.63 10.63 36.53 4.26
4195 7753 3.963428 TGAGGAACTACAGAAGGCTTC 57.037 47.619 19.53 19.53 41.55 3.86
4251 7809 2.424601 GAGGCATCATTAAGCTTGTGCA 59.575 45.455 9.86 0.00 42.74 4.57
4252 7810 2.686915 AGAGGCATCATTAAGCTTGTGC 59.313 45.455 9.86 10.99 40.05 4.57
4819 8383 3.636300 CACTTGACAAACTGGGGAAATCA 59.364 43.478 0.00 0.00 0.00 2.57
4850 8414 6.054941 ACAATGTATGCTGTGAAATATCCGA 58.945 36.000 0.00 0.00 0.00 4.55
4938 8502 2.097825 GGTCTCCAGCAGCATCATTTT 58.902 47.619 0.00 0.00 0.00 1.82
4983 8547 2.476619 GGTGTAGCTGTATATGCTTGCG 59.523 50.000 0.00 0.00 41.46 4.85
5188 8752 6.449635 ACAAGACAACTAATGCTTTCAACA 57.550 33.333 0.00 0.00 0.00 3.33
5199 8763 5.607477 CAGGTTCCTGTACAAGACAACTAA 58.393 41.667 10.40 0.00 37.70 2.24
5250 8814 6.122277 CCAGGTAAGATTTTTGCAGGAGATA 58.878 40.000 0.00 0.00 0.00 1.98
5286 8850 9.145865 GACTCCTTTCTGAAATTACAGAGTTAG 57.854 37.037 2.88 0.00 45.63 2.34
5386 8950 3.411446 TGATGACTCGTTCAAAGGCATT 58.589 40.909 0.00 0.00 42.63 3.56
5515 9079 5.103940 ACATATGCCAACTGGAGGTTTAGAT 60.104 40.000 1.58 0.00 35.74 1.98
5664 9228 3.749609 AGCTTGCTTGCCATTCAAATTTC 59.250 39.130 0.00 0.00 33.65 2.17
5701 9265 7.423844 TTCAGCATTACCTTCAGATTCTAGA 57.576 36.000 0.00 0.00 0.00 2.43
5948 9512 5.066117 ACTGAGATGCATCAAATACTGCTTG 59.934 40.000 27.81 7.22 39.16 4.01
6010 9574 5.632959 CGACTAGAGAAGATTGACGACTTT 58.367 41.667 0.00 0.00 0.00 2.66
6286 9850 4.569162 TCAGAGTTTGAATATAAACGCGGG 59.431 41.667 12.47 0.00 42.63 6.13
6289 9853 7.478667 CACAACTCAGAGTTTGAATATAAACGC 59.521 37.037 13.53 0.00 43.51 4.84
6494 10058 1.600058 TCTCCAGCAGGATGGGATTT 58.400 50.000 0.00 0.00 44.70 2.17
6676 10240 5.951747 AGCTGTAGAGTCTCTTTCTTCATCT 59.048 40.000 7.89 0.00 0.00 2.90
6831 10395 5.416083 TGACAACTGATACCAAGGTATTCG 58.584 41.667 12.73 9.42 40.93 3.34
6844 10408 6.883217 AGCAAGAGATTACAATGACAACTGAT 59.117 34.615 0.00 0.00 0.00 2.90
6870 10434 8.565416 CATGCACAGAGTTCATATAATGTCATT 58.435 33.333 3.06 3.06 0.00 2.57
7088 10652 1.000274 GTGGGTTCTTCAATTGCGCTT 60.000 47.619 9.73 0.00 0.00 4.68
7089 10653 0.598065 GTGGGTTCTTCAATTGCGCT 59.402 50.000 9.73 0.00 0.00 5.92
7092 10656 2.293399 ACGAAGTGGGTTCTTCAATTGC 59.707 45.455 0.00 0.00 42.51 3.56
7205 10777 7.540299 TGACTACACATATCACACATACGAAA 58.460 34.615 0.00 0.00 0.00 3.46
7292 10864 6.511767 CGGAGTACTTTGTATGGCATTCATTC 60.512 42.308 4.78 0.00 37.30 2.67
7347 11230 9.095065 ACTGCCTATGTAACTTTTTATAAGACG 57.905 33.333 0.00 0.00 0.00 4.18
7542 15495 7.731882 TTCGTCCAAACTGTTAACATCATTA 57.268 32.000 9.13 0.00 0.00 1.90
7702 15655 6.300354 ACATGTTAACAAACTAGTGAGTGC 57.700 37.500 13.23 0.00 35.52 4.40
7703 15656 8.181573 ACAAACATGTTAACAAACTAGTGAGTG 58.818 33.333 13.23 10.45 35.52 3.51
7786 15741 0.946221 CAGTGGACTCGGTTGACTGC 60.946 60.000 0.00 0.00 0.00 4.40
7909 15866 2.858644 ACATGGAAGTAATCAGGGGGA 58.141 47.619 0.00 0.00 0.00 4.81
8256 16216 8.356533 ACAATGCAAAGAGACAATTTTTAGTG 57.643 30.769 0.00 0.00 0.00 2.74
8312 16274 4.439305 TGCTTGCAAATGACAGGATAAC 57.561 40.909 0.00 0.00 0.00 1.89
8351 16313 9.520515 TGAGACTTCTTAAGAATTATTTTGCCT 57.479 29.630 18.02 2.95 33.01 4.75
8470 16436 9.241919 TGCTAATGATTTCTAACATGAAGGAAA 57.758 29.630 0.00 6.93 33.23 3.13
8471 16437 8.806429 TGCTAATGATTTCTAACATGAAGGAA 57.194 30.769 0.00 0.00 0.00 3.36
8473 16439 7.646922 GCTTGCTAATGATTTCTAACATGAAGG 59.353 37.037 0.00 0.00 0.00 3.46
8474 16440 8.186163 TGCTTGCTAATGATTTCTAACATGAAG 58.814 33.333 0.00 0.00 0.00 3.02
8476 16442 7.628769 TGCTTGCTAATGATTTCTAACATGA 57.371 32.000 0.00 0.00 0.00 3.07
8477 16443 7.919091 ACATGCTTGCTAATGATTTCTAACATG 59.081 33.333 0.00 0.00 35.85 3.21
8478 16444 8.004087 ACATGCTTGCTAATGATTTCTAACAT 57.996 30.769 0.00 0.00 0.00 2.71
8479 16445 7.395190 ACATGCTTGCTAATGATTTCTAACA 57.605 32.000 0.00 0.00 0.00 2.41
8480 16446 8.616076 ACTACATGCTTGCTAATGATTTCTAAC 58.384 33.333 0.00 0.00 0.00 2.34
8481 16447 8.737168 ACTACATGCTTGCTAATGATTTCTAA 57.263 30.769 0.00 0.00 0.00 2.10
8482 16448 9.830975 TTACTACATGCTTGCTAATGATTTCTA 57.169 29.630 0.00 0.00 0.00 2.10
8485 16451 8.511604 ACTTACTACATGCTTGCTAATGATTT 57.488 30.769 0.00 0.00 0.00 2.17
8486 16452 9.613428 TTACTTACTACATGCTTGCTAATGATT 57.387 29.630 0.00 0.00 0.00 2.57
8488 16454 8.474831 TCTTACTTACTACATGCTTGCTAATGA 58.525 33.333 0.00 0.00 0.00 2.57
8489 16455 8.648557 TCTTACTTACTACATGCTTGCTAATG 57.351 34.615 0.00 0.00 0.00 1.90
8490 16456 8.478877 ACTCTTACTTACTACATGCTTGCTAAT 58.521 33.333 0.00 0.00 0.00 1.73
8491 16457 7.837863 ACTCTTACTTACTACATGCTTGCTAA 58.162 34.615 0.00 0.00 0.00 3.09
8492 16458 7.406031 ACTCTTACTTACTACATGCTTGCTA 57.594 36.000 0.00 0.00 0.00 3.49
8493 16459 6.287589 ACTCTTACTTACTACATGCTTGCT 57.712 37.500 0.00 0.00 0.00 3.91
8494 16460 6.969828 AACTCTTACTTACTACATGCTTGC 57.030 37.500 0.00 0.00 0.00 4.01
8495 16461 7.759886 TGCTAACTCTTACTTACTACATGCTTG 59.240 37.037 0.00 0.00 0.00 4.01
8496 16462 7.837863 TGCTAACTCTTACTTACTACATGCTT 58.162 34.615 0.00 0.00 0.00 3.91
8497 16463 7.406031 TGCTAACTCTTACTTACTACATGCT 57.594 36.000 0.00 0.00 0.00 3.79
8498 16464 9.745880 TTATGCTAACTCTTACTTACTACATGC 57.254 33.333 0.00 0.00 0.00 4.06
8577 16543 2.041891 AGATACTCCCTCCGATCCGAAT 59.958 50.000 0.00 0.00 0.00 3.34
8681 16648 5.121811 GGATGAGTATTCAGTTGCACATCT 58.878 41.667 0.00 0.00 36.61 2.90
8697 16664 6.517013 TGACATCTACTAGTAGGGATGAGT 57.483 41.667 26.81 17.77 38.91 3.41
8700 16667 8.183104 TGAAATGACATCTACTAGTAGGGATG 57.817 38.462 26.06 23.65 40.68 3.51
8701 16668 8.964533 ATGAAATGACATCTACTAGTAGGGAT 57.035 34.615 26.06 13.19 34.06 3.85
8755 16828 2.137523 GTGCAATGCCAACCTTTCTTG 58.862 47.619 1.53 0.00 0.00 3.02
8784 16857 0.769873 CCATCTCTGAATCCCCCAGG 59.230 60.000 0.00 0.00 32.73 4.45
8791 16864 9.622004 CAAAATATGCATTACCATCTCTGAATC 57.378 33.333 3.54 0.00 0.00 2.52
8792 16865 9.358406 TCAAAATATGCATTACCATCTCTGAAT 57.642 29.630 3.54 0.00 0.00 2.57
8795 16868 8.789762 TCATCAAAATATGCATTACCATCTCTG 58.210 33.333 3.54 0.00 0.00 3.35
8821 16894 5.435686 ACAACGGCCCATCATGTATATAT 57.564 39.130 0.00 0.00 0.00 0.86
8822 16895 4.901197 ACAACGGCCCATCATGTATATA 57.099 40.909 0.00 0.00 0.00 0.86
8823 16896 3.788227 ACAACGGCCCATCATGTATAT 57.212 42.857 0.00 0.00 0.00 0.86
8824 16897 3.569194 AACAACGGCCCATCATGTATA 57.431 42.857 0.00 0.00 0.00 1.47
8969 17230 8.809159 AATATTCTGTAGACGATGAGACATTG 57.191 34.615 0.00 0.00 0.00 2.82
9052 17313 9.499479 CTAGTAGATGCAACCAAATATCATCTT 57.501 33.333 8.12 0.00 42.47 2.40
9088 17349 2.221169 TGACACTGGACAGCAACAATC 58.779 47.619 0.00 0.00 0.00 2.67
9124 17385 0.394488 GGGGGAAGCTGCTAAACCTC 60.394 60.000 0.90 7.17 0.00 3.85
9162 17423 2.126888 GGTGTGGAATGTTGCGCG 60.127 61.111 0.00 0.00 0.00 6.86
9163 17424 1.081242 CTGGTGTGGAATGTTGCGC 60.081 57.895 0.00 0.00 0.00 6.09
9164 17425 0.950836 TTCTGGTGTGGAATGTTGCG 59.049 50.000 0.00 0.00 0.00 4.85
9165 17426 2.545742 GGTTTCTGGTGTGGAATGTTGC 60.546 50.000 0.00 0.00 0.00 4.17
9166 17427 2.692557 TGGTTTCTGGTGTGGAATGTTG 59.307 45.455 0.00 0.00 0.00 3.33
9167 17428 2.958355 CTGGTTTCTGGTGTGGAATGTT 59.042 45.455 0.00 0.00 0.00 2.71
9168 17429 2.091885 ACTGGTTTCTGGTGTGGAATGT 60.092 45.455 0.00 0.00 0.00 2.71
9169 17430 2.554032 GACTGGTTTCTGGTGTGGAATG 59.446 50.000 0.00 0.00 0.00 2.67
9170 17431 2.443255 AGACTGGTTTCTGGTGTGGAAT 59.557 45.455 0.00 0.00 0.00 3.01
9171 17432 1.843851 AGACTGGTTTCTGGTGTGGAA 59.156 47.619 0.00 0.00 0.00 3.53
9172 17433 1.140852 CAGACTGGTTTCTGGTGTGGA 59.859 52.381 0.00 0.00 39.59 4.02
9173 17434 1.597742 CAGACTGGTTTCTGGTGTGG 58.402 55.000 0.00 0.00 39.59 4.17
9174 17435 0.947244 GCAGACTGGTTTCTGGTGTG 59.053 55.000 4.26 0.00 42.95 3.82
9175 17436 0.546122 TGCAGACTGGTTTCTGGTGT 59.454 50.000 4.26 0.00 42.95 4.16
9176 17437 1.233019 CTGCAGACTGGTTTCTGGTG 58.767 55.000 8.42 0.00 42.95 4.17
9177 17438 0.536006 GCTGCAGACTGGTTTCTGGT 60.536 55.000 20.43 0.00 42.95 4.00
9178 17439 0.250640 AGCTGCAGACTGGTTTCTGG 60.251 55.000 20.43 0.00 42.95 3.86
9179 17440 1.155042 GAGCTGCAGACTGGTTTCTG 58.845 55.000 20.43 0.00 45.15 3.02
9180 17441 1.055040 AGAGCTGCAGACTGGTTTCT 58.945 50.000 20.43 1.19 0.00 2.52
9181 17442 1.803555 GAAGAGCTGCAGACTGGTTTC 59.196 52.381 20.43 12.62 0.00 2.78
9182 17443 1.141657 TGAAGAGCTGCAGACTGGTTT 59.858 47.619 20.43 8.11 0.00 3.27
9183 17444 0.761187 TGAAGAGCTGCAGACTGGTT 59.239 50.000 20.43 9.57 0.00 3.67
9184 17445 0.321021 CTGAAGAGCTGCAGACTGGT 59.679 55.000 20.43 4.03 34.06 4.00
9185 17446 1.020333 GCTGAAGAGCTGCAGACTGG 61.020 60.000 20.43 10.43 42.52 4.00
9186 17447 1.020333 GGCTGAAGAGCTGCAGACTG 61.020 60.000 20.43 0.00 45.44 3.51
9187 17448 1.296068 GGCTGAAGAGCTGCAGACT 59.704 57.895 20.43 14.36 45.44 3.24
9188 17449 0.392729 ATGGCTGAAGAGCTGCAGAC 60.393 55.000 20.43 7.04 45.44 3.51
9189 17450 0.327259 AATGGCTGAAGAGCTGCAGA 59.673 50.000 20.43 0.00 45.44 4.26
9190 17451 0.733729 GAATGGCTGAAGAGCTGCAG 59.266 55.000 10.11 10.11 45.44 4.41
9191 17452 0.037160 TGAATGGCTGAAGAGCTGCA 59.963 50.000 1.02 0.00 45.44 4.41
9192 17453 1.171308 TTGAATGGCTGAAGAGCTGC 58.829 50.000 0.00 0.00 45.44 5.25
9193 17454 2.415625 GCTTTGAATGGCTGAAGAGCTG 60.416 50.000 0.00 0.00 45.44 4.24
9194 17455 1.817447 GCTTTGAATGGCTGAAGAGCT 59.183 47.619 0.00 0.00 45.44 4.09
9195 17456 1.467035 CGCTTTGAATGGCTGAAGAGC 60.467 52.381 0.00 0.00 45.40 4.09
9196 17457 1.808945 ACGCTTTGAATGGCTGAAGAG 59.191 47.619 0.00 0.00 0.00 2.85
9197 17458 1.896220 ACGCTTTGAATGGCTGAAGA 58.104 45.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.