Multiple sequence alignment - TraesCS3D01G150200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G150200 chr3D 100.000 2312 0 0 1 2312 114881723 114879412 0.000000e+00 4270.0
1 TraesCS3D01G150200 chr3D 80.623 289 49 4 301 583 103625904 103625617 1.390000e-52 217.0
2 TraesCS3D01G150200 chr3D 77.003 287 43 17 312 584 11347858 11348135 2.390000e-30 143.0
3 TraesCS3D01G150200 chr3A 89.208 1427 107 21 691 2075 111104436 111103015 0.000000e+00 1738.0
4 TraesCS3D01G150200 chr3A 92.059 340 14 6 257 586 594289848 594290184 1.250000e-127 466.0
5 TraesCS3D01G150200 chr3A 92.708 192 14 0 37 228 111104731 111104540 6.290000e-71 278.0
6 TraesCS3D01G150200 chr3A 89.474 76 5 3 2092 2164 111102933 111102858 2.450000e-15 93.5
7 TraesCS3D01G150200 chr3A 100.000 41 0 0 2272 2312 111102862 111102822 2.460000e-10 76.8
8 TraesCS3D01G150200 chr3A 100.000 35 0 0 235 269 594289792 594289826 5.330000e-07 65.8
9 TraesCS3D01G150200 chr1D 86.323 1338 125 31 709 2015 445367104 445365794 0.000000e+00 1404.0
10 TraesCS3D01G150200 chr1D 89.898 683 55 6 729 1407 446475906 446476578 0.000000e+00 867.0
11 TraesCS3D01G150200 chr1D 93.356 587 34 3 731 1316 355827820 355828402 0.000000e+00 863.0
12 TraesCS3D01G150200 chr1D 84.682 803 84 25 716 1504 388603350 388604127 0.000000e+00 765.0
13 TraesCS3D01G150200 chr1D 85.346 737 87 9 1348 2075 355828400 355829124 0.000000e+00 743.0
14 TraesCS3D01G150200 chr1D 90.000 330 22 6 264 584 110517310 110517637 1.280000e-112 416.0
15 TraesCS3D01G150200 chr1D 91.262 206 13 3 2094 2298 446477276 446477477 2.260000e-70 276.0
16 TraesCS3D01G150200 chr1D 88.889 216 22 2 2099 2312 355829210 355829425 4.900000e-67 265.0
17 TraesCS3D01G150200 chr1D 100.000 35 0 0 235 269 110517248 110517282 5.330000e-07 65.8
18 TraesCS3D01G150200 chr1A 85.880 1381 108 25 709 2075 541461073 541459766 0.000000e+00 1389.0
19 TraesCS3D01G150200 chr1A 84.554 1379 133 48 711 2075 541343537 541344849 0.000000e+00 1293.0
20 TraesCS3D01G150200 chr1A 88.027 877 61 16 737 1608 456653436 456654273 0.000000e+00 998.0
21 TraesCS3D01G150200 chr1A 84.881 377 39 12 1715 2075 456654271 456654645 4.690000e-97 364.0
22 TraesCS3D01G150200 chr1A 88.930 271 23 5 318 583 325796606 325796874 6.160000e-86 327.0
23 TraesCS3D01G150200 chr1A 89.604 202 17 3 2113 2312 541459669 541459470 1.060000e-63 254.0
24 TraesCS3D01G150200 chr1A 88.462 208 16 6 2092 2298 541344916 541345116 6.380000e-61 244.0
25 TraesCS3D01G150200 chr1A 77.419 279 57 6 309 584 49970023 49970298 6.610000e-36 161.0
26 TraesCS3D01G150200 chr1A 82.069 145 20 3 1635 1774 62793887 62793744 4.040000e-23 119.0
27 TraesCS3D01G150200 chr3B 90.596 1074 52 19 607 1673 168138728 168137697 0.000000e+00 1378.0
28 TraesCS3D01G150200 chr3B 96.410 195 7 0 35 229 168138914 168138720 2.870000e-84 322.0
29 TraesCS3D01G150200 chr3B 90.991 222 10 4 2092 2312 168137134 168136922 8.080000e-75 291.0
30 TraesCS3D01G150200 chr3B 100.000 37 0 0 1 37 168138962 168138926 4.120000e-08 69.4
31 TraesCS3D01G150200 chr1B 85.279 1379 141 41 729 2075 610892995 610894343 0.000000e+00 1365.0
32 TraesCS3D01G150200 chr1B 88.299 1017 87 16 729 1730 608043027 608042028 0.000000e+00 1190.0
33 TraesCS3D01G150200 chr1B 84.276 1202 104 45 729 1889 607317036 607315879 0.000000e+00 1094.0
34 TraesCS3D01G150200 chr1B 83.943 1202 108 45 729 1889 607137903 607136746 0.000000e+00 1072.0
35 TraesCS3D01G150200 chr1B 89.904 208 14 5 2092 2298 610894412 610894613 6.340000e-66 261.0
36 TraesCS3D01G150200 chr1B 83.537 164 21 3 1635 1793 104480894 104480732 5.150000e-32 148.0
37 TraesCS3D01G150200 chr1B 81.944 144 22 2 1653 1793 521767553 521767695 4.040000e-23 119.0
38 TraesCS3D01G150200 chr1B 98.214 56 1 0 611 666 608051085 608051030 5.260000e-17 99.0
39 TraesCS3D01G150200 chr1B 96.429 56 2 0 611 666 608353306 608353251 2.450000e-15 93.5
40 TraesCS3D01G150200 chr1B 94.915 59 3 0 607 665 610562852 610562910 2.450000e-15 93.5
41 TraesCS3D01G150200 chr1B 92.593 54 4 0 611 664 607427374 607427321 6.850000e-11 78.7
42 TraesCS3D01G150200 chr7A 78.042 337 51 19 264 584 39149868 39150197 8.430000e-45 191.0
43 TraesCS3D01G150200 chr4A 78.157 293 51 11 303 587 1733721 1734008 8.490000e-40 174.0
44 TraesCS3D01G150200 chr4D 77.003 287 43 17 312 584 15922041 15922318 2.390000e-30 143.0
45 TraesCS3D01G150200 chr6D 83.621 116 8 4 35 150 47813444 47813548 5.260000e-17 99.0
46 TraesCS3D01G150200 chr6D 100.000 37 0 0 607 643 47814152 47814188 4.120000e-08 69.4
47 TraesCS3D01G150200 chr6A 90.000 60 6 0 607 666 67140651 67140592 6.850000e-11 78.7
48 TraesCS3D01G150200 chr6A 93.333 45 3 0 164 208 67140744 67140700 1.480000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G150200 chr3D 114879412 114881723 2311 True 4270.000000 4270 100.00000 1 2312 1 chr3D.!!$R2 2311
1 TraesCS3D01G150200 chr3A 111102822 111104731 1909 True 546.575000 1738 92.84750 37 2312 4 chr3A.!!$R1 2275
2 TraesCS3D01G150200 chr1D 445365794 445367104 1310 True 1404.000000 1404 86.32300 709 2015 1 chr1D.!!$R1 1306
3 TraesCS3D01G150200 chr1D 388603350 388604127 777 False 765.000000 765 84.68200 716 1504 1 chr1D.!!$F1 788
4 TraesCS3D01G150200 chr1D 355827820 355829425 1605 False 623.666667 863 89.19700 731 2312 3 chr1D.!!$F3 1581
5 TraesCS3D01G150200 chr1D 446475906 446477477 1571 False 571.500000 867 90.58000 729 2298 2 chr1D.!!$F4 1569
6 TraesCS3D01G150200 chr1A 541459470 541461073 1603 True 821.500000 1389 87.74200 709 2312 2 chr1A.!!$R2 1603
7 TraesCS3D01G150200 chr1A 541343537 541345116 1579 False 768.500000 1293 86.50800 711 2298 2 chr1A.!!$F4 1587
8 TraesCS3D01G150200 chr1A 456653436 456654645 1209 False 681.000000 998 86.45400 737 2075 2 chr1A.!!$F3 1338
9 TraesCS3D01G150200 chr3B 168136922 168138962 2040 True 515.100000 1378 94.49925 1 2312 4 chr3B.!!$R1 2311
10 TraesCS3D01G150200 chr1B 608042028 608043027 999 True 1190.000000 1190 88.29900 729 1730 1 chr1B.!!$R5 1001
11 TraesCS3D01G150200 chr1B 607315879 607317036 1157 True 1094.000000 1094 84.27600 729 1889 1 chr1B.!!$R3 1160
12 TraesCS3D01G150200 chr1B 607136746 607137903 1157 True 1072.000000 1072 83.94300 729 1889 1 chr1B.!!$R2 1160
13 TraesCS3D01G150200 chr1B 610892995 610894613 1618 False 813.000000 1365 87.59150 729 2298 2 chr1B.!!$F3 1569

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 276 0.040067 CGACAAGCTTGGTTTGCCTC 60.04 55.0 29.18 14.91 35.27 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 2029 1.137825 CTCCCAGAACTCTCGTCGC 59.862 63.158 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 93 8.475331 TGACCGCTAAGCTATTATATTTAAGC 57.525 34.615 0.00 0.00 35.16 3.09
112 127 7.517417 CGTGTTATCTGAATGCTTGAATCCTAC 60.517 40.741 0.00 0.00 0.00 3.18
191 206 6.758886 AGCAAGTTTCCTGTAGATTATCTTCG 59.241 38.462 0.00 0.00 0.00 3.79
227 242 7.210873 ACAGTTCGGATGAAGGAGTAATAATC 58.789 38.462 0.00 0.00 33.98 1.75
228 243 7.070074 ACAGTTCGGATGAAGGAGTAATAATCT 59.930 37.037 0.00 0.00 33.98 2.40
229 244 7.928706 CAGTTCGGATGAAGGAGTAATAATCTT 59.071 37.037 0.00 0.00 33.98 2.40
230 245 8.487028 AGTTCGGATGAAGGAGTAATAATCTTT 58.513 33.333 0.00 0.00 33.98 2.52
231 246 9.110502 GTTCGGATGAAGGAGTAATAATCTTTT 57.889 33.333 0.00 0.00 33.98 2.27
232 247 8.662781 TCGGATGAAGGAGTAATAATCTTTTG 57.337 34.615 0.00 0.00 0.00 2.44
233 248 7.226720 TCGGATGAAGGAGTAATAATCTTTTGC 59.773 37.037 0.00 0.00 0.00 3.68
234 249 7.355778 GGATGAAGGAGTAATAATCTTTTGCG 58.644 38.462 0.00 0.00 0.00 4.85
235 250 6.119144 TGAAGGAGTAATAATCTTTTGCGC 57.881 37.500 0.00 0.00 0.00 6.09
236 251 5.645929 TGAAGGAGTAATAATCTTTTGCGCA 59.354 36.000 5.66 5.66 0.00 6.09
237 252 6.150307 TGAAGGAGTAATAATCTTTTGCGCAA 59.850 34.615 21.02 21.02 0.00 4.85
238 253 6.699575 AGGAGTAATAATCTTTTGCGCAAT 57.300 33.333 25.64 11.31 0.00 3.56
239 254 6.729187 AGGAGTAATAATCTTTTGCGCAATC 58.271 36.000 25.64 13.23 0.00 2.67
240 255 6.318648 AGGAGTAATAATCTTTTGCGCAATCA 59.681 34.615 25.64 12.97 0.00 2.57
241 256 7.013655 AGGAGTAATAATCTTTTGCGCAATCAT 59.986 33.333 25.64 13.07 0.00 2.45
242 257 7.324616 GGAGTAATAATCTTTTGCGCAATCATC 59.675 37.037 25.64 7.65 0.00 2.92
243 258 6.852853 AGTAATAATCTTTTGCGCAATCATCG 59.147 34.615 25.64 10.61 0.00 3.84
244 259 3.763097 AATCTTTTGCGCAATCATCGA 57.237 38.095 25.64 15.43 0.00 3.59
245 260 2.525750 TCTTTTGCGCAATCATCGAC 57.474 45.000 25.64 0.00 0.00 4.20
246 261 1.803555 TCTTTTGCGCAATCATCGACA 59.196 42.857 25.64 2.70 0.00 4.35
247 262 2.225255 TCTTTTGCGCAATCATCGACAA 59.775 40.909 25.64 11.47 0.00 3.18
248 263 2.245795 TTTGCGCAATCATCGACAAG 57.754 45.000 25.64 0.00 0.00 3.16
249 264 0.179192 TTGCGCAATCATCGACAAGC 60.179 50.000 21.02 0.00 0.00 4.01
250 265 1.020861 TGCGCAATCATCGACAAGCT 61.021 50.000 8.16 0.00 0.00 3.74
251 266 0.097674 GCGCAATCATCGACAAGCTT 59.902 50.000 0.30 0.00 0.00 3.74
252 267 1.806511 CGCAATCATCGACAAGCTTG 58.193 50.000 24.84 24.84 0.00 4.01
253 268 1.530441 CGCAATCATCGACAAGCTTGG 60.530 52.381 29.18 13.43 0.00 3.61
254 269 1.470098 GCAATCATCGACAAGCTTGGT 59.530 47.619 29.18 15.37 0.00 3.67
255 270 2.095059 GCAATCATCGACAAGCTTGGTT 60.095 45.455 29.18 10.46 0.00 3.67
256 271 3.612479 GCAATCATCGACAAGCTTGGTTT 60.612 43.478 29.18 9.67 0.00 3.27
257 272 3.837213 ATCATCGACAAGCTTGGTTTG 57.163 42.857 29.18 19.52 0.00 2.93
258 273 1.266718 TCATCGACAAGCTTGGTTTGC 59.733 47.619 29.18 12.28 0.00 3.68
259 274 0.598065 ATCGACAAGCTTGGTTTGCC 59.402 50.000 29.18 10.43 0.00 4.52
260 275 0.465460 TCGACAAGCTTGGTTTGCCT 60.465 50.000 29.18 7.31 35.27 4.75
261 276 0.040067 CGACAAGCTTGGTTTGCCTC 60.040 55.000 29.18 14.91 35.27 4.70
262 277 1.032014 GACAAGCTTGGTTTGCCTCA 58.968 50.000 29.18 0.00 35.27 3.86
263 278 0.746659 ACAAGCTTGGTTTGCCTCAC 59.253 50.000 29.18 0.00 35.27 3.51
264 279 0.318107 CAAGCTTGGTTTGCCTCACG 60.318 55.000 19.14 0.00 35.27 4.35
265 280 0.751643 AAGCTTGGTTTGCCTCACGT 60.752 50.000 0.00 0.00 35.27 4.49
266 281 1.166531 AGCTTGGTTTGCCTCACGTC 61.167 55.000 0.00 0.00 35.27 4.34
267 282 1.444119 GCTTGGTTTGCCTCACGTCA 61.444 55.000 0.00 0.00 35.27 4.35
268 283 1.021202 CTTGGTTTGCCTCACGTCAA 58.979 50.000 0.00 0.00 35.27 3.18
269 284 1.608590 CTTGGTTTGCCTCACGTCAAT 59.391 47.619 0.00 0.00 35.27 2.57
270 285 1.234821 TGGTTTGCCTCACGTCAATC 58.765 50.000 0.00 0.00 35.27 2.67
271 286 1.234821 GGTTTGCCTCACGTCAATCA 58.765 50.000 0.00 0.00 0.00 2.57
272 287 1.606668 GGTTTGCCTCACGTCAATCAA 59.393 47.619 0.00 0.00 0.00 2.57
273 288 2.228822 GGTTTGCCTCACGTCAATCAAT 59.771 45.455 0.00 0.00 0.00 2.57
274 289 3.236816 GTTTGCCTCACGTCAATCAATG 58.763 45.455 0.00 0.00 0.00 2.82
275 290 1.452110 TGCCTCACGTCAATCAATGG 58.548 50.000 0.00 0.00 0.00 3.16
276 291 1.271325 TGCCTCACGTCAATCAATGGT 60.271 47.619 0.00 0.00 0.00 3.55
277 292 1.131126 GCCTCACGTCAATCAATGGTG 59.869 52.381 0.00 0.00 0.00 4.17
278 293 1.739466 CCTCACGTCAATCAATGGTGG 59.261 52.381 0.00 0.00 0.00 4.61
279 294 1.739466 CTCACGTCAATCAATGGTGGG 59.261 52.381 0.00 0.00 0.00 4.61
280 295 1.349357 TCACGTCAATCAATGGTGGGA 59.651 47.619 0.00 0.00 0.00 4.37
281 296 1.468520 CACGTCAATCAATGGTGGGAC 59.531 52.381 0.00 0.00 0.00 4.46
282 297 1.073125 ACGTCAATCAATGGTGGGACA 59.927 47.619 0.00 0.00 0.00 4.02
283 298 2.158559 CGTCAATCAATGGTGGGACAA 58.841 47.619 0.00 0.00 44.16 3.18
284 299 2.754552 CGTCAATCAATGGTGGGACAAT 59.245 45.455 0.00 0.00 44.16 2.71
285 300 3.181497 CGTCAATCAATGGTGGGACAATC 60.181 47.826 0.00 0.00 44.16 2.67
286 301 3.763360 GTCAATCAATGGTGGGACAATCA 59.237 43.478 0.00 0.00 44.16 2.57
287 302 4.018490 TCAATCAATGGTGGGACAATCAG 58.982 43.478 0.00 0.00 44.16 2.90
288 303 4.018490 CAATCAATGGTGGGACAATCAGA 58.982 43.478 0.00 0.00 44.16 3.27
289 304 3.071874 TCAATGGTGGGACAATCAGAC 57.928 47.619 0.00 0.00 44.16 3.51
290 305 2.644299 TCAATGGTGGGACAATCAGACT 59.356 45.455 0.00 0.00 44.16 3.24
291 306 2.751259 CAATGGTGGGACAATCAGACTG 59.249 50.000 0.00 0.00 44.16 3.51
292 307 1.728323 TGGTGGGACAATCAGACTGA 58.272 50.000 7.80 7.80 44.16 3.41
293 308 1.347707 TGGTGGGACAATCAGACTGAC 59.652 52.381 7.47 0.00 44.16 3.51
294 309 1.347707 GGTGGGACAATCAGACTGACA 59.652 52.381 7.47 0.00 44.16 3.58
295 310 2.224523 GGTGGGACAATCAGACTGACAA 60.225 50.000 7.47 0.00 44.16 3.18
296 311 3.476552 GTGGGACAATCAGACTGACAAA 58.523 45.455 7.47 0.00 44.16 2.83
297 312 3.251004 GTGGGACAATCAGACTGACAAAC 59.749 47.826 7.47 0.47 44.16 2.93
298 313 3.136443 TGGGACAATCAGACTGACAAACT 59.864 43.478 7.47 0.00 31.92 2.66
299 314 4.137543 GGGACAATCAGACTGACAAACTT 58.862 43.478 7.47 0.00 0.00 2.66
300 315 4.214332 GGGACAATCAGACTGACAAACTTC 59.786 45.833 7.47 0.00 0.00 3.01
301 316 4.816385 GGACAATCAGACTGACAAACTTCA 59.184 41.667 7.47 0.00 0.00 3.02
302 317 5.296780 GGACAATCAGACTGACAAACTTCAA 59.703 40.000 7.47 0.00 0.00 2.69
303 318 6.183360 GGACAATCAGACTGACAAACTTCAAA 60.183 38.462 7.47 0.00 0.00 2.69
304 319 6.555315 ACAATCAGACTGACAAACTTCAAAC 58.445 36.000 7.47 0.00 0.00 2.93
305 320 6.375455 ACAATCAGACTGACAAACTTCAAACT 59.625 34.615 7.47 0.00 0.00 2.66
306 321 5.801350 TCAGACTGACAAACTTCAAACTG 57.199 39.130 0.00 0.00 33.59 3.16
307 322 4.635765 TCAGACTGACAAACTTCAAACTGG 59.364 41.667 0.00 0.00 33.36 4.00
308 323 3.378427 AGACTGACAAACTTCAAACTGGC 59.622 43.478 0.00 0.00 0.00 4.85
309 324 3.088532 ACTGACAAACTTCAAACTGGCA 58.911 40.909 0.00 0.00 0.00 4.92
310 325 3.701040 ACTGACAAACTTCAAACTGGCAT 59.299 39.130 0.00 0.00 0.00 4.40
311 326 4.044336 TGACAAACTTCAAACTGGCATG 57.956 40.909 0.00 0.00 0.00 4.06
312 327 2.796593 GACAAACTTCAAACTGGCATGC 59.203 45.455 9.90 9.90 0.00 4.06
313 328 2.137523 CAAACTTCAAACTGGCATGCC 58.862 47.619 30.54 30.54 0.00 4.40
314 329 1.412079 AACTTCAAACTGGCATGCCA 58.588 45.000 36.26 36.26 45.02 4.92
315 330 1.636148 ACTTCAAACTGGCATGCCAT 58.364 45.000 38.47 23.42 46.15 4.40
316 331 1.274167 ACTTCAAACTGGCATGCCATG 59.726 47.619 38.47 31.69 46.15 3.66
317 332 0.609151 TTCAAACTGGCATGCCATGG 59.391 50.000 38.47 29.17 46.15 3.66
328 343 2.520260 GCCATGGCATCCCTCACC 60.520 66.667 32.08 0.00 41.49 4.02
329 344 3.009275 CCATGGCATCCCTCACCA 58.991 61.111 0.00 0.00 37.99 4.17
330 345 1.540166 CCATGGCATCCCTCACCAT 59.460 57.895 0.00 0.00 45.08 3.55
332 347 1.152610 ATGGCATCCCTCACCATGC 60.153 57.895 0.00 0.00 42.59 4.06
333 348 1.652187 ATGGCATCCCTCACCATGCT 61.652 55.000 0.00 0.00 44.20 3.79
334 349 1.076485 GGCATCCCTCACCATGCTT 60.076 57.895 4.05 0.00 44.20 3.91
335 350 0.183492 GGCATCCCTCACCATGCTTA 59.817 55.000 4.05 0.00 44.20 3.09
336 351 1.202976 GGCATCCCTCACCATGCTTAT 60.203 52.381 4.05 0.00 44.20 1.73
337 352 2.157738 GCATCCCTCACCATGCTTATC 58.842 52.381 0.00 0.00 41.93 1.75
338 353 2.224719 GCATCCCTCACCATGCTTATCT 60.225 50.000 0.00 0.00 41.93 1.98
339 354 3.672808 CATCCCTCACCATGCTTATCTC 58.327 50.000 0.00 0.00 0.00 2.75
340 355 2.050144 TCCCTCACCATGCTTATCTCC 58.950 52.381 0.00 0.00 0.00 3.71
341 356 1.770658 CCCTCACCATGCTTATCTCCA 59.229 52.381 0.00 0.00 0.00 3.86
342 357 2.374504 CCCTCACCATGCTTATCTCCAT 59.625 50.000 0.00 0.00 0.00 3.41
343 358 3.409570 CCTCACCATGCTTATCTCCATG 58.590 50.000 0.00 0.00 38.78 3.66
351 366 6.401047 CATGCTTATCTCCATGGATTGTTT 57.599 37.500 16.63 1.18 36.16 2.83
352 367 5.840243 TGCTTATCTCCATGGATTGTTTG 57.160 39.130 16.63 2.02 0.00 2.93
353 368 4.646040 TGCTTATCTCCATGGATTGTTTGG 59.354 41.667 16.63 1.19 0.00 3.28
354 369 4.889409 GCTTATCTCCATGGATTGTTTGGA 59.111 41.667 16.63 7.52 37.20 3.53
355 370 5.360714 GCTTATCTCCATGGATTGTTTGGAA 59.639 40.000 16.63 0.87 38.99 3.53
356 371 6.681368 GCTTATCTCCATGGATTGTTTGGAAC 60.681 42.308 16.63 0.00 38.99 3.62
357 372 3.081061 TCTCCATGGATTGTTTGGAACG 58.919 45.455 16.63 0.00 38.99 3.95
358 373 3.081061 CTCCATGGATTGTTTGGAACGA 58.919 45.455 16.63 0.00 38.99 3.85
359 374 3.081061 TCCATGGATTGTTTGGAACGAG 58.919 45.455 11.44 0.00 36.62 4.18
360 375 2.415893 CCATGGATTGTTTGGAACGAGC 60.416 50.000 5.56 0.00 31.94 5.03
361 376 0.871722 TGGATTGTTTGGAACGAGCG 59.128 50.000 0.00 0.00 31.94 5.03
362 377 0.168128 GGATTGTTTGGAACGAGCGG 59.832 55.000 0.00 0.00 31.94 5.52
363 378 1.153353 GATTGTTTGGAACGAGCGGA 58.847 50.000 0.00 0.00 0.00 5.54
364 379 1.533731 GATTGTTTGGAACGAGCGGAA 59.466 47.619 0.00 0.00 0.00 4.30
365 380 0.658897 TTGTTTGGAACGAGCGGAAC 59.341 50.000 0.00 0.00 0.00 3.62
379 394 2.463592 GGAACGCTAGGGTTTTCCG 58.536 57.895 24.22 4.46 41.82 4.30
380 395 1.642037 GGAACGCTAGGGTTTTCCGC 61.642 60.000 24.22 12.15 41.82 5.54
381 396 1.642037 GAACGCTAGGGTTTTCCGCC 61.642 60.000 24.22 8.55 41.82 6.13
382 397 2.046700 CGCTAGGGTTTTCCGCCA 60.047 61.111 0.00 0.00 41.82 5.69
383 398 1.673009 CGCTAGGGTTTTCCGCCAA 60.673 57.895 0.00 0.00 41.82 4.52
384 399 1.238625 CGCTAGGGTTTTCCGCCAAA 61.239 55.000 0.00 0.00 41.82 3.28
385 400 0.963225 GCTAGGGTTTTCCGCCAAAA 59.037 50.000 0.00 0.00 41.82 2.44
386 401 1.341852 GCTAGGGTTTTCCGCCAAAAA 59.658 47.619 0.00 0.00 41.82 1.94
387 402 2.028476 GCTAGGGTTTTCCGCCAAAAAT 60.028 45.455 0.00 0.00 41.82 1.82
388 403 3.193903 GCTAGGGTTTTCCGCCAAAAATA 59.806 43.478 0.00 0.00 41.82 1.40
389 404 4.142026 GCTAGGGTTTTCCGCCAAAAATAT 60.142 41.667 0.00 0.00 41.82 1.28
390 405 4.200838 AGGGTTTTCCGCCAAAAATATG 57.799 40.909 0.00 0.00 41.82 1.78
391 406 2.675844 GGGTTTTCCGCCAAAAATATGC 59.324 45.455 0.00 0.00 41.82 3.14
392 407 2.675844 GGTTTTCCGCCAAAAATATGCC 59.324 45.455 0.00 0.00 35.68 4.40
393 408 2.675844 GTTTTCCGCCAAAAATATGCCC 59.324 45.455 0.00 0.00 35.68 5.36
394 409 0.827368 TTCCGCCAAAAATATGCCCC 59.173 50.000 0.00 0.00 0.00 5.80
395 410 0.324738 TCCGCCAAAAATATGCCCCA 60.325 50.000 0.00 0.00 0.00 4.96
396 411 0.179086 CCGCCAAAAATATGCCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
397 412 0.179086 CGCCAAAAATATGCCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
398 413 0.179086 GCCAAAAATATGCCCCACCG 60.179 55.000 0.00 0.00 0.00 4.94
399 414 0.179086 CCAAAAATATGCCCCACCGC 60.179 55.000 0.00 0.00 0.00 5.68
400 415 0.179086 CAAAAATATGCCCCACCGCC 60.179 55.000 0.00 0.00 0.00 6.13
401 416 0.325203 AAAAATATGCCCCACCGCCT 60.325 50.000 0.00 0.00 0.00 5.52
402 417 0.553819 AAAATATGCCCCACCGCCTA 59.446 50.000 0.00 0.00 0.00 3.93
403 418 0.777446 AAATATGCCCCACCGCCTAT 59.223 50.000 0.00 0.00 0.00 2.57
404 419 0.777446 AATATGCCCCACCGCCTATT 59.223 50.000 0.00 0.00 0.00 1.73
405 420 0.328258 ATATGCCCCACCGCCTATTC 59.672 55.000 0.00 0.00 0.00 1.75
406 421 0.766674 TATGCCCCACCGCCTATTCT 60.767 55.000 0.00 0.00 0.00 2.40
407 422 0.766674 ATGCCCCACCGCCTATTCTA 60.767 55.000 0.00 0.00 0.00 2.10
408 423 1.070957 GCCCCACCGCCTATTCTAC 59.929 63.158 0.00 0.00 0.00 2.59
409 424 1.408453 GCCCCACCGCCTATTCTACT 61.408 60.000 0.00 0.00 0.00 2.57
410 425 1.129058 CCCCACCGCCTATTCTACTT 58.871 55.000 0.00 0.00 0.00 2.24
411 426 2.322658 CCCCACCGCCTATTCTACTTA 58.677 52.381 0.00 0.00 0.00 2.24
412 427 2.036862 CCCCACCGCCTATTCTACTTAC 59.963 54.545 0.00 0.00 0.00 2.34
413 428 2.696707 CCCACCGCCTATTCTACTTACA 59.303 50.000 0.00 0.00 0.00 2.41
414 429 3.492137 CCCACCGCCTATTCTACTTACAC 60.492 52.174 0.00 0.00 0.00 2.90
415 430 3.383825 CCACCGCCTATTCTACTTACACT 59.616 47.826 0.00 0.00 0.00 3.55
416 431 4.499357 CCACCGCCTATTCTACTTACACTC 60.499 50.000 0.00 0.00 0.00 3.51
417 432 4.097437 CACCGCCTATTCTACTTACACTCA 59.903 45.833 0.00 0.00 0.00 3.41
418 433 4.894114 ACCGCCTATTCTACTTACACTCAT 59.106 41.667 0.00 0.00 0.00 2.90
419 434 5.363005 ACCGCCTATTCTACTTACACTCATT 59.637 40.000 0.00 0.00 0.00 2.57
420 435 6.548622 ACCGCCTATTCTACTTACACTCATTA 59.451 38.462 0.00 0.00 0.00 1.90
421 436 7.232941 ACCGCCTATTCTACTTACACTCATTAT 59.767 37.037 0.00 0.00 0.00 1.28
422 437 7.755822 CCGCCTATTCTACTTACACTCATTATC 59.244 40.741 0.00 0.00 0.00 1.75
423 438 7.482113 CGCCTATTCTACTTACACTCATTATCG 59.518 40.741 0.00 0.00 0.00 2.92
424 439 8.512956 GCCTATTCTACTTACACTCATTATCGA 58.487 37.037 0.00 0.00 0.00 3.59
425 440 9.828852 CCTATTCTACTTACACTCATTATCGAC 57.171 37.037 0.00 0.00 0.00 4.20
426 441 9.531412 CTATTCTACTTACACTCATTATCGACG 57.469 37.037 0.00 0.00 0.00 5.12
427 442 7.543947 TTCTACTTACACTCATTATCGACGA 57.456 36.000 0.00 0.00 0.00 4.20
428 443 7.175073 TCTACTTACACTCATTATCGACGAG 57.825 40.000 3.01 0.00 0.00 4.18
429 444 5.171147 ACTTACACTCATTATCGACGAGG 57.829 43.478 3.01 0.00 0.00 4.63
430 445 2.493713 ACACTCATTATCGACGAGGC 57.506 50.000 3.01 0.00 0.00 4.70
431 446 1.067212 ACACTCATTATCGACGAGGCC 59.933 52.381 3.01 0.00 0.00 5.19
432 447 1.067060 CACTCATTATCGACGAGGCCA 59.933 52.381 5.01 0.00 0.00 5.36
433 448 1.754803 ACTCATTATCGACGAGGCCAA 59.245 47.619 5.01 0.00 0.00 4.52
434 449 2.167693 ACTCATTATCGACGAGGCCAAA 59.832 45.455 5.01 0.00 0.00 3.28
435 450 3.181465 ACTCATTATCGACGAGGCCAAAT 60.181 43.478 5.01 0.00 0.00 2.32
436 451 3.804036 TCATTATCGACGAGGCCAAATT 58.196 40.909 5.01 0.00 0.00 1.82
437 452 4.951254 TCATTATCGACGAGGCCAAATTA 58.049 39.130 5.01 0.00 0.00 1.40
438 453 5.547465 TCATTATCGACGAGGCCAAATTAT 58.453 37.500 5.01 0.00 0.00 1.28
439 454 5.408299 TCATTATCGACGAGGCCAAATTATG 59.592 40.000 5.01 0.00 0.00 1.90
453 468 4.353737 CAAATTATGGATCACAACTGGCG 58.646 43.478 0.00 0.00 0.00 5.69
454 469 1.378531 TTATGGATCACAACTGGCGC 58.621 50.000 0.00 0.00 0.00 6.53
455 470 0.463654 TATGGATCACAACTGGCGCC 60.464 55.000 22.73 22.73 0.00 6.53
456 471 2.359850 GGATCACAACTGGCGCCA 60.360 61.111 30.59 30.59 0.00 5.69
457 472 1.971167 GGATCACAACTGGCGCCAA 60.971 57.895 32.09 15.48 0.00 4.52
458 473 1.503542 GATCACAACTGGCGCCAAG 59.496 57.895 32.09 25.07 0.00 3.61
459 474 0.955428 GATCACAACTGGCGCCAAGA 60.955 55.000 32.09 21.81 0.00 3.02
460 475 0.537143 ATCACAACTGGCGCCAAGAA 60.537 50.000 32.09 16.05 0.00 2.52
461 476 0.749818 TCACAACTGGCGCCAAGAAA 60.750 50.000 32.09 11.17 0.00 2.52
462 477 0.594796 CACAACTGGCGCCAAGAAAC 60.595 55.000 32.09 0.00 0.00 2.78
463 478 0.751643 ACAACTGGCGCCAAGAAACT 60.752 50.000 32.09 7.91 0.00 2.66
464 479 1.234821 CAACTGGCGCCAAGAAACTA 58.765 50.000 32.09 4.31 0.00 2.24
465 480 1.197721 CAACTGGCGCCAAGAAACTAG 59.802 52.381 32.09 18.43 0.00 2.57
466 481 0.321653 ACTGGCGCCAAGAAACTAGG 60.322 55.000 32.09 17.65 0.00 3.02
467 482 1.002624 TGGCGCCAAGAAACTAGGG 60.003 57.895 30.74 0.00 0.00 3.53
468 483 1.298667 GGCGCCAAGAAACTAGGGA 59.701 57.895 24.80 0.00 0.00 4.20
469 484 0.322187 GGCGCCAAGAAACTAGGGAA 60.322 55.000 24.80 0.00 0.00 3.97
470 485 1.682087 GGCGCCAAGAAACTAGGGAAT 60.682 52.381 24.80 0.00 0.00 3.01
471 486 1.401905 GCGCCAAGAAACTAGGGAATG 59.598 52.381 0.00 0.00 0.00 2.67
472 487 2.711542 CGCCAAGAAACTAGGGAATGT 58.288 47.619 0.00 0.00 0.00 2.71
473 488 3.081804 CGCCAAGAAACTAGGGAATGTT 58.918 45.455 0.00 0.00 0.00 2.71
474 489 4.258543 CGCCAAGAAACTAGGGAATGTTA 58.741 43.478 0.00 0.00 0.00 2.41
475 490 4.881850 CGCCAAGAAACTAGGGAATGTTAT 59.118 41.667 0.00 0.00 0.00 1.89
476 491 5.357032 CGCCAAGAAACTAGGGAATGTTATT 59.643 40.000 0.00 0.00 0.00 1.40
477 492 6.127730 CGCCAAGAAACTAGGGAATGTTATTT 60.128 38.462 0.00 0.00 0.00 1.40
478 493 7.576856 CGCCAAGAAACTAGGGAATGTTATTTT 60.577 37.037 0.00 0.00 0.00 1.82
479 494 7.545615 GCCAAGAAACTAGGGAATGTTATTTTG 59.454 37.037 0.00 0.00 0.00 2.44
480 495 8.585018 CCAAGAAACTAGGGAATGTTATTTTGT 58.415 33.333 0.00 0.00 0.00 2.83
481 496 9.410556 CAAGAAACTAGGGAATGTTATTTTGTG 57.589 33.333 0.00 0.00 0.00 3.33
482 497 8.706322 AGAAACTAGGGAATGTTATTTTGTGT 57.294 30.769 0.00 0.00 0.00 3.72
483 498 8.576442 AGAAACTAGGGAATGTTATTTTGTGTG 58.424 33.333 0.00 0.00 0.00 3.82
484 499 8.472007 AAACTAGGGAATGTTATTTTGTGTGA 57.528 30.769 0.00 0.00 0.00 3.58
485 500 7.687941 ACTAGGGAATGTTATTTTGTGTGAG 57.312 36.000 0.00 0.00 0.00 3.51
486 501 7.231467 ACTAGGGAATGTTATTTTGTGTGAGT 58.769 34.615 0.00 0.00 0.00 3.41
487 502 8.380099 ACTAGGGAATGTTATTTTGTGTGAGTA 58.620 33.333 0.00 0.00 0.00 2.59
488 503 9.226606 CTAGGGAATGTTATTTTGTGTGAGTAA 57.773 33.333 0.00 0.00 0.00 2.24
489 504 8.650143 AGGGAATGTTATTTTGTGTGAGTAAT 57.350 30.769 0.00 0.00 0.00 1.89
490 505 9.088987 AGGGAATGTTATTTTGTGTGAGTAATT 57.911 29.630 0.00 0.00 0.00 1.40
499 514 5.733226 TTGTGTGAGTAATTATCATGCCG 57.267 39.130 0.00 0.00 0.00 5.69
500 515 4.765273 TGTGTGAGTAATTATCATGCCGT 58.235 39.130 0.00 0.00 0.00 5.68
501 516 5.182487 TGTGTGAGTAATTATCATGCCGTT 58.818 37.500 0.00 0.00 0.00 4.44
502 517 5.645929 TGTGTGAGTAATTATCATGCCGTTT 59.354 36.000 0.00 0.00 0.00 3.60
503 518 6.150307 TGTGTGAGTAATTATCATGCCGTTTT 59.850 34.615 0.00 0.00 0.00 2.43
504 519 6.468956 GTGTGAGTAATTATCATGCCGTTTTG 59.531 38.462 0.00 0.00 0.00 2.44
505 520 6.150307 TGTGAGTAATTATCATGCCGTTTTGT 59.850 34.615 0.00 0.00 0.00 2.83
506 521 6.468956 GTGAGTAATTATCATGCCGTTTTGTG 59.531 38.462 0.00 0.00 0.00 3.33
507 522 5.890334 AGTAATTATCATGCCGTTTTGTGG 58.110 37.500 0.00 0.00 0.00 4.17
508 523 3.799281 ATTATCATGCCGTTTTGTGGG 57.201 42.857 0.00 0.00 0.00 4.61
509 524 2.498644 TATCATGCCGTTTTGTGGGA 57.501 45.000 0.00 0.00 0.00 4.37
510 525 1.851304 ATCATGCCGTTTTGTGGGAT 58.149 45.000 0.00 0.00 38.16 3.85
511 526 3.422122 CATGCCGTTTTGTGGGATG 57.578 52.632 0.00 0.00 46.69 3.51
512 527 0.602562 CATGCCGTTTTGTGGGATGT 59.397 50.000 5.46 0.00 46.67 3.06
513 528 0.887933 ATGCCGTTTTGTGGGATGTC 59.112 50.000 0.00 0.00 36.06 3.06
514 529 0.179004 TGCCGTTTTGTGGGATGTCT 60.179 50.000 0.00 0.00 0.00 3.41
515 530 0.958822 GCCGTTTTGTGGGATGTCTT 59.041 50.000 0.00 0.00 0.00 3.01
516 531 1.335872 GCCGTTTTGTGGGATGTCTTG 60.336 52.381 0.00 0.00 0.00 3.02
517 532 1.953686 CCGTTTTGTGGGATGTCTTGT 59.046 47.619 0.00 0.00 0.00 3.16
518 533 3.142951 CCGTTTTGTGGGATGTCTTGTA 58.857 45.455 0.00 0.00 0.00 2.41
519 534 3.566322 CCGTTTTGTGGGATGTCTTGTAA 59.434 43.478 0.00 0.00 0.00 2.41
520 535 4.036971 CCGTTTTGTGGGATGTCTTGTAAA 59.963 41.667 0.00 0.00 0.00 2.01
521 536 5.450688 CCGTTTTGTGGGATGTCTTGTAAAA 60.451 40.000 0.00 0.00 0.00 1.52
522 537 5.457473 CGTTTTGTGGGATGTCTTGTAAAAC 59.543 40.000 0.00 0.00 34.93 2.43
523 538 6.569780 GTTTTGTGGGATGTCTTGTAAAACT 58.430 36.000 0.00 0.00 35.23 2.66
524 539 6.385649 TTTGTGGGATGTCTTGTAAAACTC 57.614 37.500 0.00 0.00 0.00 3.01
525 540 5.304686 TGTGGGATGTCTTGTAAAACTCT 57.695 39.130 0.00 0.00 0.00 3.24
526 541 5.305585 TGTGGGATGTCTTGTAAAACTCTC 58.694 41.667 0.00 0.00 0.00 3.20
527 542 5.071788 TGTGGGATGTCTTGTAAAACTCTCT 59.928 40.000 0.00 0.00 0.00 3.10
528 543 5.998363 GTGGGATGTCTTGTAAAACTCTCTT 59.002 40.000 0.00 0.00 0.00 2.85
529 544 5.997746 TGGGATGTCTTGTAAAACTCTCTTG 59.002 40.000 0.00 0.00 0.00 3.02
530 545 5.998363 GGGATGTCTTGTAAAACTCTCTTGT 59.002 40.000 0.00 0.00 0.00 3.16
531 546 6.147985 GGGATGTCTTGTAAAACTCTCTTGTC 59.852 42.308 0.00 0.00 0.00 3.18
532 547 6.931840 GGATGTCTTGTAAAACTCTCTTGTCT 59.068 38.462 0.00 0.00 0.00 3.41
533 548 7.117092 GGATGTCTTGTAAAACTCTCTTGTCTC 59.883 40.741 0.00 0.00 0.00 3.36
534 549 7.113658 TGTCTTGTAAAACTCTCTTGTCTCT 57.886 36.000 0.00 0.00 0.00 3.10
535 550 7.556844 TGTCTTGTAAAACTCTCTTGTCTCTT 58.443 34.615 0.00 0.00 0.00 2.85
536 551 7.707035 TGTCTTGTAAAACTCTCTTGTCTCTTC 59.293 37.037 0.00 0.00 0.00 2.87
537 552 7.923878 GTCTTGTAAAACTCTCTTGTCTCTTCT 59.076 37.037 0.00 0.00 0.00 2.85
538 553 8.478877 TCTTGTAAAACTCTCTTGTCTCTTCTT 58.521 33.333 0.00 0.00 0.00 2.52
539 554 9.751542 CTTGTAAAACTCTCTTGTCTCTTCTTA 57.248 33.333 0.00 0.00 0.00 2.10
547 562 9.883142 ACTCTCTTGTCTCTTCTTATTTAATGG 57.117 33.333 0.00 0.00 0.00 3.16
553 568 9.618890 TTGTCTCTTCTTATTTAATGGATGAGG 57.381 33.333 16.70 2.44 33.60 3.86
554 569 7.716998 TGTCTCTTCTTATTTAATGGATGAGGC 59.283 37.037 15.61 15.61 36.11 4.70
555 570 7.716998 GTCTCTTCTTATTTAATGGATGAGGCA 59.283 37.037 16.61 0.00 35.83 4.75
556 571 8.274322 TCTCTTCTTATTTAATGGATGAGGCAA 58.726 33.333 16.70 4.94 33.60 4.52
557 572 8.821686 TCTTCTTATTTAATGGATGAGGCAAA 57.178 30.769 0.00 0.00 0.00 3.68
558 573 9.425248 TCTTCTTATTTAATGGATGAGGCAAAT 57.575 29.630 0.00 0.00 0.00 2.32
559 574 9.688592 CTTCTTATTTAATGGATGAGGCAAATC 57.311 33.333 0.00 0.00 0.00 2.17
560 575 9.425248 TTCTTATTTAATGGATGAGGCAAATCT 57.575 29.630 0.00 0.00 0.00 2.40
561 576 9.425248 TCTTATTTAATGGATGAGGCAAATCTT 57.575 29.630 0.00 0.00 0.00 2.40
564 579 8.726870 ATTTAATGGATGAGGCAAATCTTTTG 57.273 30.769 0.00 0.00 0.00 2.44
565 580 3.598019 TGGATGAGGCAAATCTTTTGC 57.402 42.857 14.88 14.88 44.22 3.68
566 581 3.167485 TGGATGAGGCAAATCTTTTGCT 58.833 40.909 20.56 9.75 44.36 3.91
567 582 3.579586 TGGATGAGGCAAATCTTTTGCTT 59.420 39.130 20.56 15.26 44.36 3.91
569 584 3.665745 TGAGGCAAATCTTTTGCTTCC 57.334 42.857 24.89 14.96 46.74 3.46
570 585 2.964464 TGAGGCAAATCTTTTGCTTCCA 59.036 40.909 24.89 16.66 46.74 3.53
571 586 3.579586 TGAGGCAAATCTTTTGCTTCCAT 59.420 39.130 24.89 9.42 46.74 3.41
572 587 4.179298 GAGGCAAATCTTTTGCTTCCATC 58.821 43.478 20.18 10.36 43.14 3.51
573 588 3.836562 AGGCAAATCTTTTGCTTCCATCT 59.163 39.130 20.56 8.52 44.36 2.90
574 589 4.081807 AGGCAAATCTTTTGCTTCCATCTC 60.082 41.667 20.56 5.52 44.36 2.75
575 590 3.855950 GCAAATCTTTTGCTTCCATCTCG 59.144 43.478 15.71 0.00 41.87 4.04
576 591 4.379813 GCAAATCTTTTGCTTCCATCTCGA 60.380 41.667 15.71 0.00 41.87 4.04
577 592 5.702865 CAAATCTTTTGCTTCCATCTCGAA 58.297 37.500 0.00 0.00 0.00 3.71
578 593 5.964958 AATCTTTTGCTTCCATCTCGAAA 57.035 34.783 0.00 0.00 0.00 3.46
579 594 5.964958 ATCTTTTGCTTCCATCTCGAAAA 57.035 34.783 0.00 0.00 0.00 2.29
580 595 5.766150 TCTTTTGCTTCCATCTCGAAAAA 57.234 34.783 0.00 0.00 0.00 1.94
666 681 7.611467 TGGAGCAAGTATATCAAGTTGAATTGT 59.389 33.333 10.14 0.00 32.51 2.71
667 682 8.462016 GGAGCAAGTATATCAAGTTGAATTGTT 58.538 33.333 10.14 8.10 32.51 2.83
668 683 9.846248 GAGCAAGTATATCAAGTTGAATTGTTT 57.154 29.630 10.14 0.00 32.51 2.83
698 753 8.884124 TTTTATTCTCCCACATGAAGAATCTT 57.116 30.769 15.46 0.00 32.37 2.40
699 754 8.511604 TTTATTCTCCCACATGAAGAATCTTC 57.488 34.615 15.62 15.62 32.37 2.87
826 883 4.147449 CGCGGCATCTCTCACCCA 62.147 66.667 0.00 0.00 0.00 4.51
853 910 1.032657 ATCTCGACCGTCCACTCCAG 61.033 60.000 0.00 0.00 0.00 3.86
938 1003 0.178981 ACCCTGCAAATCACAGCACT 60.179 50.000 0.00 0.00 36.62 4.40
939 1004 0.524862 CCCTGCAAATCACAGCACTC 59.475 55.000 0.00 0.00 36.62 3.51
940 1005 1.241165 CCTGCAAATCACAGCACTCA 58.759 50.000 0.00 0.00 36.62 3.41
941 1006 1.199327 CCTGCAAATCACAGCACTCAG 59.801 52.381 0.00 0.00 36.62 3.35
942 1007 0.594602 TGCAAATCACAGCACTCAGC 59.405 50.000 0.00 0.00 46.19 4.26
991 1087 2.897641 ATCCGCTCGCAGCTTGAGAC 62.898 60.000 15.32 6.91 39.60 3.36
1395 1533 0.794473 CCCGACTTGTTTAGTTCGCC 59.206 55.000 0.00 0.00 37.17 5.54
1608 1808 6.438763 ACTACTTGTTTGCAGTCTAATTTGC 58.561 36.000 0.00 0.00 40.67 3.68
1663 1864 1.680735 TGTGTCCCAATTCAGCAACAC 59.319 47.619 0.00 0.00 37.96 3.32
1666 1867 1.000274 GTCCCAATTCAGCAACACCAC 60.000 52.381 0.00 0.00 0.00 4.16
1670 1871 2.361757 CCAATTCAGCAACACCACTTGA 59.638 45.455 0.00 0.00 0.00 3.02
1697 1898 2.554142 TCTGCTATTTGATCTGGTGCG 58.446 47.619 0.00 0.00 0.00 5.34
1796 2022 5.508200 ACATCGAGTTCTAGATTGAGTCC 57.492 43.478 0.00 0.00 0.00 3.85
1801 2027 6.366340 TCGAGTTCTAGATTGAGTCCCTATT 58.634 40.000 0.00 0.00 0.00 1.73
1803 2029 6.566942 CGAGTTCTAGATTGAGTCCCTATTCG 60.567 46.154 0.00 0.00 0.00 3.34
1804 2030 5.010213 AGTTCTAGATTGAGTCCCTATTCGC 59.990 44.000 0.00 0.00 0.00 4.70
1879 2108 7.930325 ACTATATCACAGTGACCAATTCATGAG 59.070 37.037 5.05 0.00 36.32 2.90
1937 2170 9.806203 TCAGGATCATAATTTGTGCTTTATTTG 57.194 29.630 0.00 0.00 0.00 2.32
2032 2435 0.537188 CGATACCCTCTTGGCAGTGT 59.463 55.000 0.00 0.00 37.83 3.55
2076 2549 7.465353 TTGAATTGATCAAGAGGTGCAATAA 57.535 32.000 14.54 0.00 43.08 1.40
2079 2552 5.643379 TTGATCAAGAGGTGCAATAAACC 57.357 39.130 3.38 0.00 38.03 3.27
2083 2556 5.235850 TCAAGAGGTGCAATAAACCAGTA 57.764 39.130 0.00 0.00 40.40 2.74
2085 2558 6.245408 TCAAGAGGTGCAATAAACCAGTATT 58.755 36.000 0.00 0.00 40.40 1.89
2088 2561 6.485171 AGAGGTGCAATAAACCAGTATTTCT 58.515 36.000 0.00 0.00 40.40 2.52
2090 2563 7.451566 AGAGGTGCAATAAACCAGTATTTCTTT 59.548 33.333 0.00 0.00 40.40 2.52
2221 2704 6.077838 GTCGTTTGGCTTTGAAGTATACTTG 58.922 40.000 22.68 9.33 36.11 3.16
2224 2707 7.604927 TCGTTTGGCTTTGAAGTATACTTGTAT 59.395 33.333 22.68 0.00 36.11 2.29
2225 2708 8.875803 CGTTTGGCTTTGAAGTATACTTGTATA 58.124 33.333 22.68 6.23 36.11 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 93 6.775088 AGCATTCAGATAACACGTTACAATG 58.225 36.000 0.00 1.50 0.00 2.82
112 127 5.049818 CAGAGCTTACTGGAGTTCACTTTTG 60.050 44.000 0.00 0.00 34.64 2.44
199 214 3.665190 ACTCCTTCATCCGAACTGTTTC 58.335 45.455 0.00 0.00 0.00 2.78
219 234 6.850823 TCGATGATTGCGCAAAAGATTATTAC 59.149 34.615 28.81 9.15 0.00 1.89
227 242 2.245795 TGTCGATGATTGCGCAAAAG 57.754 45.000 28.81 15.92 0.00 2.27
228 243 2.583739 CTTGTCGATGATTGCGCAAAA 58.416 42.857 28.81 18.91 0.00 2.44
229 244 1.728825 GCTTGTCGATGATTGCGCAAA 60.729 47.619 28.81 12.58 0.00 3.68
230 245 0.179192 GCTTGTCGATGATTGCGCAA 60.179 50.000 27.24 27.24 0.00 4.85
231 246 1.020861 AGCTTGTCGATGATTGCGCA 61.021 50.000 5.66 5.66 0.00 6.09
232 247 0.097674 AAGCTTGTCGATGATTGCGC 59.902 50.000 0.00 0.00 0.00 6.09
233 248 1.530441 CCAAGCTTGTCGATGATTGCG 60.530 52.381 24.35 1.29 0.00 4.85
234 249 1.470098 ACCAAGCTTGTCGATGATTGC 59.530 47.619 24.35 1.08 0.00 3.56
235 250 3.837213 AACCAAGCTTGTCGATGATTG 57.163 42.857 24.35 8.66 0.00 2.67
236 251 3.612479 GCAAACCAAGCTTGTCGATGATT 60.612 43.478 24.35 7.42 0.00 2.57
237 252 2.095059 GCAAACCAAGCTTGTCGATGAT 60.095 45.455 24.35 1.28 0.00 2.45
238 253 1.266718 GCAAACCAAGCTTGTCGATGA 59.733 47.619 24.35 0.00 0.00 2.92
239 254 1.666888 GGCAAACCAAGCTTGTCGATG 60.667 52.381 24.35 17.26 35.26 3.84
240 255 0.598065 GGCAAACCAAGCTTGTCGAT 59.402 50.000 24.35 5.65 35.26 3.59
241 256 0.465460 AGGCAAACCAAGCTTGTCGA 60.465 50.000 24.35 0.00 39.06 4.20
242 257 0.040067 GAGGCAAACCAAGCTTGTCG 60.040 55.000 24.35 12.91 39.06 4.35
243 258 1.032014 TGAGGCAAACCAAGCTTGTC 58.968 50.000 24.35 13.81 39.06 3.18
244 259 0.746659 GTGAGGCAAACCAAGCTTGT 59.253 50.000 24.35 10.37 39.06 3.16
245 260 0.318107 CGTGAGGCAAACCAAGCTTG 60.318 55.000 19.93 19.93 39.06 4.01
246 261 0.751643 ACGTGAGGCAAACCAAGCTT 60.752 50.000 0.00 0.00 39.06 3.74
247 262 1.152963 ACGTGAGGCAAACCAAGCT 60.153 52.632 0.00 0.00 39.06 3.74
248 263 1.282875 GACGTGAGGCAAACCAAGC 59.717 57.895 0.00 0.00 40.66 4.01
257 272 1.131126 CACCATTGATTGACGTGAGGC 59.869 52.381 0.00 0.00 42.12 4.70
258 273 1.739466 CCACCATTGATTGACGTGAGG 59.261 52.381 0.00 0.00 0.00 3.86
259 274 1.739466 CCCACCATTGATTGACGTGAG 59.261 52.381 0.00 0.00 0.00 3.51
260 275 1.349357 TCCCACCATTGATTGACGTGA 59.651 47.619 0.00 0.00 0.00 4.35
261 276 1.468520 GTCCCACCATTGATTGACGTG 59.531 52.381 0.00 0.00 0.00 4.49
262 277 1.073125 TGTCCCACCATTGATTGACGT 59.927 47.619 0.00 0.00 0.00 4.34
263 278 1.819928 TGTCCCACCATTGATTGACG 58.180 50.000 0.00 0.00 0.00 4.35
264 279 3.763360 TGATTGTCCCACCATTGATTGAC 59.237 43.478 0.00 0.00 0.00 3.18
265 280 4.018490 CTGATTGTCCCACCATTGATTGA 58.982 43.478 0.00 0.00 0.00 2.57
266 281 4.018490 TCTGATTGTCCCACCATTGATTG 58.982 43.478 0.00 0.00 0.00 2.67
267 282 4.019174 GTCTGATTGTCCCACCATTGATT 58.981 43.478 0.00 0.00 0.00 2.57
268 283 3.267812 AGTCTGATTGTCCCACCATTGAT 59.732 43.478 0.00 0.00 0.00 2.57
269 284 2.644299 AGTCTGATTGTCCCACCATTGA 59.356 45.455 0.00 0.00 0.00 2.57
270 285 2.751259 CAGTCTGATTGTCCCACCATTG 59.249 50.000 0.00 0.00 0.00 2.82
271 286 2.644299 TCAGTCTGATTGTCCCACCATT 59.356 45.455 0.00 0.00 0.00 3.16
272 287 2.026822 GTCAGTCTGATTGTCCCACCAT 60.027 50.000 5.68 0.00 0.00 3.55
273 288 1.347707 GTCAGTCTGATTGTCCCACCA 59.652 52.381 5.68 0.00 0.00 4.17
274 289 1.347707 TGTCAGTCTGATTGTCCCACC 59.652 52.381 5.68 0.00 0.00 4.61
275 290 2.839486 TGTCAGTCTGATTGTCCCAC 57.161 50.000 5.68 0.00 0.00 4.61
276 291 3.136443 AGTTTGTCAGTCTGATTGTCCCA 59.864 43.478 5.68 0.00 0.00 4.37
277 292 3.744660 AGTTTGTCAGTCTGATTGTCCC 58.255 45.455 5.68 0.00 0.00 4.46
278 293 4.816385 TGAAGTTTGTCAGTCTGATTGTCC 59.184 41.667 5.68 0.00 0.00 4.02
279 294 5.991328 TGAAGTTTGTCAGTCTGATTGTC 57.009 39.130 5.68 0.00 0.00 3.18
280 295 6.375455 AGTTTGAAGTTTGTCAGTCTGATTGT 59.625 34.615 5.68 0.00 0.00 2.71
281 296 6.690098 CAGTTTGAAGTTTGTCAGTCTGATTG 59.310 38.462 5.68 0.00 34.70 2.67
282 297 6.183360 CCAGTTTGAAGTTTGTCAGTCTGATT 60.183 38.462 5.68 0.00 34.70 2.57
283 298 5.297776 CCAGTTTGAAGTTTGTCAGTCTGAT 59.702 40.000 5.68 0.00 34.70 2.90
284 299 4.635765 CCAGTTTGAAGTTTGTCAGTCTGA 59.364 41.667 0.00 0.00 34.70 3.27
285 300 4.731773 GCCAGTTTGAAGTTTGTCAGTCTG 60.732 45.833 0.00 0.00 33.64 3.51
286 301 3.378427 GCCAGTTTGAAGTTTGTCAGTCT 59.622 43.478 0.00 0.00 0.00 3.24
287 302 3.128589 TGCCAGTTTGAAGTTTGTCAGTC 59.871 43.478 0.00 0.00 0.00 3.51
288 303 3.088532 TGCCAGTTTGAAGTTTGTCAGT 58.911 40.909 0.00 0.00 0.00 3.41
289 304 3.781079 TGCCAGTTTGAAGTTTGTCAG 57.219 42.857 0.00 0.00 0.00 3.51
290 305 3.737663 GCATGCCAGTTTGAAGTTTGTCA 60.738 43.478 6.36 0.00 0.00 3.58
291 306 2.796593 GCATGCCAGTTTGAAGTTTGTC 59.203 45.455 6.36 0.00 0.00 3.18
292 307 2.483538 GGCATGCCAGTTTGAAGTTTGT 60.484 45.455 32.08 0.00 35.81 2.83
293 308 2.137523 GGCATGCCAGTTTGAAGTTTG 58.862 47.619 32.08 0.00 35.81 2.93
294 309 1.761784 TGGCATGCCAGTTTGAAGTTT 59.238 42.857 35.59 0.00 41.89 2.66
295 310 1.412079 TGGCATGCCAGTTTGAAGTT 58.588 45.000 35.59 0.00 41.89 2.66
296 311 3.130264 TGGCATGCCAGTTTGAAGT 57.870 47.368 35.59 0.00 41.89 3.01
311 326 2.520260 GGTGAGGGATGCCATGGC 60.520 66.667 30.54 30.54 42.35 4.40
312 327 1.540166 ATGGTGAGGGATGCCATGG 59.460 57.895 7.63 7.63 41.05 3.66
314 329 1.152610 GCATGGTGAGGGATGCCAT 60.153 57.895 5.86 0.00 43.14 4.40
315 330 1.866483 AAGCATGGTGAGGGATGCCA 61.866 55.000 5.86 0.00 45.13 4.92
316 331 0.183492 TAAGCATGGTGAGGGATGCC 59.817 55.000 0.00 0.00 45.13 4.40
317 332 2.157738 GATAAGCATGGTGAGGGATGC 58.842 52.381 0.00 0.00 44.49 3.91
318 333 3.558746 GGAGATAAGCATGGTGAGGGATG 60.559 52.174 0.00 0.00 0.00 3.51
319 334 2.641815 GGAGATAAGCATGGTGAGGGAT 59.358 50.000 0.00 0.00 0.00 3.85
320 335 2.050144 GGAGATAAGCATGGTGAGGGA 58.950 52.381 0.00 0.00 0.00 4.20
321 336 1.770658 TGGAGATAAGCATGGTGAGGG 59.229 52.381 0.00 0.00 0.00 4.30
322 337 3.409570 CATGGAGATAAGCATGGTGAGG 58.590 50.000 0.00 0.00 0.00 3.86
323 338 3.072038 TCCATGGAGATAAGCATGGTGAG 59.928 47.826 11.44 0.00 43.60 3.51
324 339 3.047857 TCCATGGAGATAAGCATGGTGA 58.952 45.455 11.44 0.00 43.60 4.02
325 340 3.497103 TCCATGGAGATAAGCATGGTG 57.503 47.619 11.44 0.00 43.60 4.17
326 341 4.141088 ACAATCCATGGAGATAAGCATGGT 60.141 41.667 21.33 0.90 43.60 3.55
327 342 4.404640 ACAATCCATGGAGATAAGCATGG 58.595 43.478 21.33 0.00 44.29 3.66
328 343 6.213677 CAAACAATCCATGGAGATAAGCATG 58.786 40.000 21.33 10.46 0.00 4.06
329 344 5.303589 CCAAACAATCCATGGAGATAAGCAT 59.696 40.000 21.33 0.00 36.27 3.79
330 345 4.646040 CCAAACAATCCATGGAGATAAGCA 59.354 41.667 21.33 0.00 36.27 3.91
331 346 4.889409 TCCAAACAATCCATGGAGATAAGC 59.111 41.667 21.33 0.00 38.30 3.09
332 347 6.458751 CGTTCCAAACAATCCATGGAGATAAG 60.459 42.308 21.33 9.98 43.69 1.73
333 348 5.356751 CGTTCCAAACAATCCATGGAGATAA 59.643 40.000 21.33 0.00 43.69 1.75
334 349 4.881273 CGTTCCAAACAATCCATGGAGATA 59.119 41.667 21.33 0.00 43.69 1.98
335 350 3.696051 CGTTCCAAACAATCCATGGAGAT 59.304 43.478 21.33 8.87 43.69 2.75
336 351 3.081061 CGTTCCAAACAATCCATGGAGA 58.919 45.455 21.33 7.05 43.69 3.71
337 352 3.081061 TCGTTCCAAACAATCCATGGAG 58.919 45.455 21.33 10.10 43.69 3.86
338 353 3.081061 CTCGTTCCAAACAATCCATGGA 58.919 45.455 18.88 18.88 41.36 3.41
339 354 2.415893 GCTCGTTCCAAACAATCCATGG 60.416 50.000 4.97 4.97 35.49 3.66
340 355 2.728846 CGCTCGTTCCAAACAATCCATG 60.729 50.000 0.00 0.00 0.00 3.66
341 356 1.468520 CGCTCGTTCCAAACAATCCAT 59.531 47.619 0.00 0.00 0.00 3.41
342 357 0.871722 CGCTCGTTCCAAACAATCCA 59.128 50.000 0.00 0.00 0.00 3.41
343 358 0.168128 CCGCTCGTTCCAAACAATCC 59.832 55.000 0.00 0.00 0.00 3.01
344 359 1.153353 TCCGCTCGTTCCAAACAATC 58.847 50.000 0.00 0.00 0.00 2.67
345 360 1.265905 GTTCCGCTCGTTCCAAACAAT 59.734 47.619 0.00 0.00 0.00 2.71
346 361 0.658897 GTTCCGCTCGTTCCAAACAA 59.341 50.000 0.00 0.00 0.00 2.83
347 362 1.492319 CGTTCCGCTCGTTCCAAACA 61.492 55.000 0.00 0.00 0.00 2.83
348 363 1.203313 CGTTCCGCTCGTTCCAAAC 59.797 57.895 0.00 0.00 0.00 2.93
349 364 3.632700 CGTTCCGCTCGTTCCAAA 58.367 55.556 0.00 0.00 0.00 3.28
360 375 2.463592 GGAAAACCCTAGCGTTCCG 58.536 57.895 0.00 0.00 30.85 4.30
361 376 1.642037 GCGGAAAACCCTAGCGTTCC 61.642 60.000 0.00 0.00 36.89 3.62
362 377 1.642037 GGCGGAAAACCCTAGCGTTC 61.642 60.000 0.00 0.00 0.00 3.95
363 378 1.673337 GGCGGAAAACCCTAGCGTT 60.673 57.895 0.00 0.00 0.00 4.84
364 379 2.046604 GGCGGAAAACCCTAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
365 380 1.238625 TTTGGCGGAAAACCCTAGCG 61.239 55.000 0.00 0.00 0.00 4.26
366 381 0.963225 TTTTGGCGGAAAACCCTAGC 59.037 50.000 0.00 0.00 0.00 3.42
367 382 3.953712 ATTTTTGGCGGAAAACCCTAG 57.046 42.857 1.41 0.00 33.09 3.02
368 383 4.382147 GCATATTTTTGGCGGAAAACCCTA 60.382 41.667 1.41 0.00 33.09 3.53
369 384 3.618752 GCATATTTTTGGCGGAAAACCCT 60.619 43.478 1.41 0.00 33.09 4.34
370 385 2.675844 GCATATTTTTGGCGGAAAACCC 59.324 45.455 1.41 0.00 33.09 4.11
371 386 2.675844 GGCATATTTTTGGCGGAAAACC 59.324 45.455 1.41 0.00 33.09 3.27
372 387 2.675844 GGGCATATTTTTGGCGGAAAAC 59.324 45.455 1.41 0.00 42.75 2.43
373 388 2.355209 GGGGCATATTTTTGGCGGAAAA 60.355 45.455 1.82 1.82 42.75 2.29
374 389 1.208293 GGGGCATATTTTTGGCGGAAA 59.792 47.619 0.00 0.00 42.75 3.13
375 390 0.827368 GGGGCATATTTTTGGCGGAA 59.173 50.000 0.00 0.00 42.75 4.30
376 391 0.324738 TGGGGCATATTTTTGGCGGA 60.325 50.000 0.00 0.00 42.75 5.54
377 392 0.179086 GTGGGGCATATTTTTGGCGG 60.179 55.000 0.00 0.00 42.75 6.13
378 393 0.179086 GGTGGGGCATATTTTTGGCG 60.179 55.000 0.00 0.00 42.75 5.69
379 394 0.179086 CGGTGGGGCATATTTTTGGC 60.179 55.000 0.00 0.00 41.20 4.52
380 395 0.179086 GCGGTGGGGCATATTTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
381 396 0.179086 GGCGGTGGGGCATATTTTTG 60.179 55.000 0.00 0.00 41.77 2.44
382 397 0.325203 AGGCGGTGGGGCATATTTTT 60.325 50.000 0.00 0.00 45.36 1.94
383 398 0.553819 TAGGCGGTGGGGCATATTTT 59.446 50.000 0.00 0.00 45.36 1.82
384 399 0.777446 ATAGGCGGTGGGGCATATTT 59.223 50.000 0.00 0.00 45.36 1.40
385 400 0.777446 AATAGGCGGTGGGGCATATT 59.223 50.000 0.00 0.00 42.92 1.28
386 401 0.328258 GAATAGGCGGTGGGGCATAT 59.672 55.000 0.00 0.00 45.36 1.78
387 402 0.766674 AGAATAGGCGGTGGGGCATA 60.767 55.000 0.00 0.00 45.36 3.14
388 403 0.766674 TAGAATAGGCGGTGGGGCAT 60.767 55.000 0.00 0.00 45.36 4.40
389 404 1.383386 TAGAATAGGCGGTGGGGCA 60.383 57.895 0.00 0.00 45.36 5.36
390 405 1.070957 GTAGAATAGGCGGTGGGGC 59.929 63.158 0.00 0.00 42.69 5.80
391 406 1.129058 AAGTAGAATAGGCGGTGGGG 58.871 55.000 0.00 0.00 0.00 4.96
392 407 2.696707 TGTAAGTAGAATAGGCGGTGGG 59.303 50.000 0.00 0.00 0.00 4.61
393 408 3.383825 AGTGTAAGTAGAATAGGCGGTGG 59.616 47.826 0.00 0.00 0.00 4.61
394 409 4.097437 TGAGTGTAAGTAGAATAGGCGGTG 59.903 45.833 0.00 0.00 0.00 4.94
395 410 4.275810 TGAGTGTAAGTAGAATAGGCGGT 58.724 43.478 0.00 0.00 0.00 5.68
396 411 4.913335 TGAGTGTAAGTAGAATAGGCGG 57.087 45.455 0.00 0.00 0.00 6.13
397 412 7.482113 CGATAATGAGTGTAAGTAGAATAGGCG 59.518 40.741 0.00 0.00 0.00 5.52
398 413 8.512956 TCGATAATGAGTGTAAGTAGAATAGGC 58.487 37.037 0.00 0.00 0.00 3.93
399 414 9.828852 GTCGATAATGAGTGTAAGTAGAATAGG 57.171 37.037 0.00 0.00 0.00 2.57
400 415 9.531412 CGTCGATAATGAGTGTAAGTAGAATAG 57.469 37.037 0.00 0.00 0.00 1.73
401 416 9.264719 TCGTCGATAATGAGTGTAAGTAGAATA 57.735 33.333 0.00 0.00 0.00 1.75
402 417 8.151141 TCGTCGATAATGAGTGTAAGTAGAAT 57.849 34.615 0.00 0.00 0.00 2.40
403 418 7.254692 CCTCGTCGATAATGAGTGTAAGTAGAA 60.255 40.741 0.00 0.00 39.08 2.10
404 419 6.202379 CCTCGTCGATAATGAGTGTAAGTAGA 59.798 42.308 0.00 0.00 39.08 2.59
405 420 6.364261 CCTCGTCGATAATGAGTGTAAGTAG 58.636 44.000 0.00 0.00 39.08 2.57
406 421 5.277683 GCCTCGTCGATAATGAGTGTAAGTA 60.278 44.000 0.00 0.00 39.08 2.24
407 422 4.497674 GCCTCGTCGATAATGAGTGTAAGT 60.498 45.833 0.00 0.00 39.08 2.24
408 423 3.975670 GCCTCGTCGATAATGAGTGTAAG 59.024 47.826 0.00 0.00 39.08 2.34
409 424 3.243301 GGCCTCGTCGATAATGAGTGTAA 60.243 47.826 0.00 0.00 39.08 2.41
410 425 2.292569 GGCCTCGTCGATAATGAGTGTA 59.707 50.000 0.00 0.00 39.08 2.90
411 426 1.067212 GGCCTCGTCGATAATGAGTGT 59.933 52.381 0.00 0.00 39.08 3.55
412 427 1.067060 TGGCCTCGTCGATAATGAGTG 59.933 52.381 3.32 0.00 39.08 3.51
413 428 1.399714 TGGCCTCGTCGATAATGAGT 58.600 50.000 3.32 0.00 39.08 3.41
414 429 2.509052 TTGGCCTCGTCGATAATGAG 57.491 50.000 3.32 0.00 40.24 2.90
415 430 2.971660 TTTGGCCTCGTCGATAATGA 57.028 45.000 3.32 0.00 0.00 2.57
416 431 5.390885 CCATAATTTGGCCTCGTCGATAATG 60.391 44.000 3.32 0.00 39.09 1.90
417 432 4.695455 CCATAATTTGGCCTCGTCGATAAT 59.305 41.667 3.32 0.00 39.09 1.28
418 433 4.062293 CCATAATTTGGCCTCGTCGATAA 58.938 43.478 3.32 0.00 39.09 1.75
419 434 3.322541 TCCATAATTTGGCCTCGTCGATA 59.677 43.478 3.32 0.00 46.01 2.92
420 435 2.104111 TCCATAATTTGGCCTCGTCGAT 59.896 45.455 3.32 0.00 46.01 3.59
421 436 1.483004 TCCATAATTTGGCCTCGTCGA 59.517 47.619 3.32 0.00 46.01 4.20
422 437 1.948104 TCCATAATTTGGCCTCGTCG 58.052 50.000 3.32 0.00 46.01 5.12
423 438 3.251004 GTGATCCATAATTTGGCCTCGTC 59.749 47.826 3.32 0.00 46.01 4.20
424 439 3.214328 GTGATCCATAATTTGGCCTCGT 58.786 45.455 3.32 0.00 46.01 4.18
425 440 3.213506 TGTGATCCATAATTTGGCCTCG 58.786 45.455 3.32 0.00 46.01 4.63
426 441 4.646492 AGTTGTGATCCATAATTTGGCCTC 59.354 41.667 3.32 0.00 46.01 4.70
427 442 4.403432 CAGTTGTGATCCATAATTTGGCCT 59.597 41.667 3.32 0.00 46.01 5.19
428 443 4.441913 CCAGTTGTGATCCATAATTTGGCC 60.442 45.833 0.00 0.00 46.01 5.36
429 444 4.685924 CCAGTTGTGATCCATAATTTGGC 58.314 43.478 0.00 0.00 46.01 4.52
431 446 4.353737 CGCCAGTTGTGATCCATAATTTG 58.646 43.478 0.00 0.00 0.00 2.32
432 447 3.181487 GCGCCAGTTGTGATCCATAATTT 60.181 43.478 0.00 0.00 0.00 1.82
433 448 2.358898 GCGCCAGTTGTGATCCATAATT 59.641 45.455 0.00 0.00 0.00 1.40
434 449 1.949525 GCGCCAGTTGTGATCCATAAT 59.050 47.619 0.00 0.00 0.00 1.28
435 450 1.378531 GCGCCAGTTGTGATCCATAA 58.621 50.000 0.00 0.00 0.00 1.90
436 451 0.463654 GGCGCCAGTTGTGATCCATA 60.464 55.000 24.80 0.00 0.00 2.74
437 452 1.750399 GGCGCCAGTTGTGATCCAT 60.750 57.895 24.80 0.00 0.00 3.41
438 453 2.359850 GGCGCCAGTTGTGATCCA 60.360 61.111 24.80 0.00 0.00 3.41
439 454 1.926511 CTTGGCGCCAGTTGTGATCC 61.927 60.000 30.75 0.00 0.00 3.36
440 455 0.955428 TCTTGGCGCCAGTTGTGATC 60.955 55.000 30.75 0.00 0.00 2.92
441 456 0.537143 TTCTTGGCGCCAGTTGTGAT 60.537 50.000 30.75 0.00 0.00 3.06
442 457 0.749818 TTTCTTGGCGCCAGTTGTGA 60.750 50.000 30.75 19.53 0.00 3.58
443 458 0.594796 GTTTCTTGGCGCCAGTTGTG 60.595 55.000 30.75 17.61 0.00 3.33
444 459 0.751643 AGTTTCTTGGCGCCAGTTGT 60.752 50.000 30.75 10.74 0.00 3.32
445 460 1.197721 CTAGTTTCTTGGCGCCAGTTG 59.802 52.381 30.75 22.56 0.00 3.16
446 461 1.523758 CTAGTTTCTTGGCGCCAGTT 58.476 50.000 30.75 14.48 0.00 3.16
447 462 0.321653 CCTAGTTTCTTGGCGCCAGT 60.322 55.000 30.75 12.97 0.00 4.00
448 463 1.026718 CCCTAGTTTCTTGGCGCCAG 61.027 60.000 30.75 22.76 0.00 4.85
449 464 1.002624 CCCTAGTTTCTTGGCGCCA 60.003 57.895 29.03 29.03 0.00 5.69
450 465 0.322187 TTCCCTAGTTTCTTGGCGCC 60.322 55.000 22.73 22.73 0.00 6.53
451 466 1.401905 CATTCCCTAGTTTCTTGGCGC 59.598 52.381 0.00 0.00 0.00 6.53
452 467 2.711542 ACATTCCCTAGTTTCTTGGCG 58.288 47.619 0.00 0.00 0.00 5.69
453 468 6.775594 AATAACATTCCCTAGTTTCTTGGC 57.224 37.500 0.00 0.00 0.00 4.52
454 469 8.585018 ACAAAATAACATTCCCTAGTTTCTTGG 58.415 33.333 0.00 0.00 0.00 3.61
455 470 9.410556 CACAAAATAACATTCCCTAGTTTCTTG 57.589 33.333 0.00 0.00 0.00 3.02
456 471 9.143155 ACACAAAATAACATTCCCTAGTTTCTT 57.857 29.630 0.00 0.00 0.00 2.52
457 472 8.576442 CACACAAAATAACATTCCCTAGTTTCT 58.424 33.333 0.00 0.00 0.00 2.52
458 473 8.573035 TCACACAAAATAACATTCCCTAGTTTC 58.427 33.333 0.00 0.00 0.00 2.78
459 474 8.472007 TCACACAAAATAACATTCCCTAGTTT 57.528 30.769 0.00 0.00 0.00 2.66
460 475 7.724061 ACTCACACAAAATAACATTCCCTAGTT 59.276 33.333 0.00 0.00 0.00 2.24
461 476 7.231467 ACTCACACAAAATAACATTCCCTAGT 58.769 34.615 0.00 0.00 0.00 2.57
462 477 7.687941 ACTCACACAAAATAACATTCCCTAG 57.312 36.000 0.00 0.00 0.00 3.02
463 478 9.747898 ATTACTCACACAAAATAACATTCCCTA 57.252 29.630 0.00 0.00 0.00 3.53
464 479 8.650143 ATTACTCACACAAAATAACATTCCCT 57.350 30.769 0.00 0.00 0.00 4.20
473 488 8.341903 CGGCATGATAATTACTCACACAAAATA 58.658 33.333 0.00 0.00 0.00 1.40
474 489 7.148086 ACGGCATGATAATTACTCACACAAAAT 60.148 33.333 0.00 0.00 0.00 1.82
475 490 6.150307 ACGGCATGATAATTACTCACACAAAA 59.850 34.615 0.00 0.00 0.00 2.44
476 491 5.645929 ACGGCATGATAATTACTCACACAAA 59.354 36.000 0.00 0.00 0.00 2.83
477 492 5.182487 ACGGCATGATAATTACTCACACAA 58.818 37.500 0.00 0.00 0.00 3.33
478 493 4.765273 ACGGCATGATAATTACTCACACA 58.235 39.130 0.00 0.00 0.00 3.72
479 494 5.734855 AACGGCATGATAATTACTCACAC 57.265 39.130 0.00 0.00 0.00 3.82
480 495 6.150307 ACAAAACGGCATGATAATTACTCACA 59.850 34.615 0.00 0.00 0.00 3.58
481 496 6.468956 CACAAAACGGCATGATAATTACTCAC 59.531 38.462 0.00 0.00 0.00 3.51
482 497 6.404184 CCACAAAACGGCATGATAATTACTCA 60.404 38.462 0.00 0.00 0.00 3.41
483 498 5.971202 CCACAAAACGGCATGATAATTACTC 59.029 40.000 0.00 0.00 0.00 2.59
484 499 5.163561 CCCACAAAACGGCATGATAATTACT 60.164 40.000 0.00 0.00 0.00 2.24
485 500 5.040635 CCCACAAAACGGCATGATAATTAC 58.959 41.667 0.00 0.00 0.00 1.89
486 501 4.950475 TCCCACAAAACGGCATGATAATTA 59.050 37.500 0.00 0.00 0.00 1.40
487 502 3.766591 TCCCACAAAACGGCATGATAATT 59.233 39.130 0.00 0.00 0.00 1.40
488 503 3.360867 TCCCACAAAACGGCATGATAAT 58.639 40.909 0.00 0.00 0.00 1.28
489 504 2.796557 TCCCACAAAACGGCATGATAA 58.203 42.857 0.00 0.00 0.00 1.75
490 505 2.498644 TCCCACAAAACGGCATGATA 57.501 45.000 0.00 0.00 0.00 2.15
491 506 1.477700 CATCCCACAAAACGGCATGAT 59.522 47.619 0.00 0.00 0.00 2.45
492 507 0.887247 CATCCCACAAAACGGCATGA 59.113 50.000 0.00 0.00 0.00 3.07
493 508 0.602562 ACATCCCACAAAACGGCATG 59.397 50.000 0.00 0.00 0.00 4.06
494 509 0.887933 GACATCCCACAAAACGGCAT 59.112 50.000 0.00 0.00 0.00 4.40
495 510 0.179004 AGACATCCCACAAAACGGCA 60.179 50.000 0.00 0.00 0.00 5.69
496 511 0.958822 AAGACATCCCACAAAACGGC 59.041 50.000 0.00 0.00 0.00 5.68
497 512 1.953686 ACAAGACATCCCACAAAACGG 59.046 47.619 0.00 0.00 0.00 4.44
498 513 4.822036 TTACAAGACATCCCACAAAACG 57.178 40.909 0.00 0.00 0.00 3.60
499 514 6.569780 AGTTTTACAAGACATCCCACAAAAC 58.430 36.000 0.00 0.00 35.76 2.43
500 515 6.605594 AGAGTTTTACAAGACATCCCACAAAA 59.394 34.615 0.00 0.00 0.00 2.44
501 516 6.126409 AGAGTTTTACAAGACATCCCACAAA 58.874 36.000 0.00 0.00 0.00 2.83
502 517 5.690865 AGAGTTTTACAAGACATCCCACAA 58.309 37.500 0.00 0.00 0.00 3.33
503 518 5.071788 AGAGAGTTTTACAAGACATCCCACA 59.928 40.000 0.00 0.00 0.00 4.17
504 519 5.552178 AGAGAGTTTTACAAGACATCCCAC 58.448 41.667 0.00 0.00 0.00 4.61
505 520 5.825593 AGAGAGTTTTACAAGACATCCCA 57.174 39.130 0.00 0.00 0.00 4.37
506 521 5.998363 ACAAGAGAGTTTTACAAGACATCCC 59.002 40.000 0.00 0.00 0.00 3.85
507 522 6.931840 AGACAAGAGAGTTTTACAAGACATCC 59.068 38.462 0.00 0.00 0.00 3.51
508 523 7.870445 AGAGACAAGAGAGTTTTACAAGACATC 59.130 37.037 0.00 0.00 0.00 3.06
509 524 7.731054 AGAGACAAGAGAGTTTTACAAGACAT 58.269 34.615 0.00 0.00 0.00 3.06
510 525 7.113658 AGAGACAAGAGAGTTTTACAAGACA 57.886 36.000 0.00 0.00 0.00 3.41
511 526 7.923878 AGAAGAGACAAGAGAGTTTTACAAGAC 59.076 37.037 0.00 0.00 0.00 3.01
512 527 8.012957 AGAAGAGACAAGAGAGTTTTACAAGA 57.987 34.615 0.00 0.00 0.00 3.02
513 528 8.655651 AAGAAGAGACAAGAGAGTTTTACAAG 57.344 34.615 0.00 0.00 0.00 3.16
521 536 9.883142 CCATTAAATAAGAAGAGACAAGAGAGT 57.117 33.333 0.00 0.00 0.00 3.24
527 542 9.618890 CCTCATCCATTAAATAAGAAGAGACAA 57.381 33.333 0.00 0.00 0.00 3.18
528 543 7.716998 GCCTCATCCATTAAATAAGAAGAGACA 59.283 37.037 0.00 0.00 0.00 3.41
529 544 7.716998 TGCCTCATCCATTAAATAAGAAGAGAC 59.283 37.037 0.00 0.00 0.00 3.36
530 545 7.805163 TGCCTCATCCATTAAATAAGAAGAGA 58.195 34.615 0.00 0.00 0.00 3.10
531 546 8.455903 TTGCCTCATCCATTAAATAAGAAGAG 57.544 34.615 0.00 0.00 0.00 2.85
532 547 8.821686 TTTGCCTCATCCATTAAATAAGAAGA 57.178 30.769 0.00 0.00 0.00 2.87
533 548 9.688592 GATTTGCCTCATCCATTAAATAAGAAG 57.311 33.333 0.00 0.00 0.00 2.85
534 549 9.425248 AGATTTGCCTCATCCATTAAATAAGAA 57.575 29.630 0.00 0.00 0.00 2.52
535 550 9.425248 AAGATTTGCCTCATCCATTAAATAAGA 57.575 29.630 0.00 0.00 0.00 2.10
538 553 9.820725 CAAAAGATTTGCCTCATCCATTAAATA 57.179 29.630 0.00 0.00 0.00 1.40
539 554 7.281549 GCAAAAGATTTGCCTCATCCATTAAAT 59.718 33.333 15.12 0.00 39.38 1.40
540 555 6.594937 GCAAAAGATTTGCCTCATCCATTAAA 59.405 34.615 15.12 0.00 39.38 1.52
541 556 6.070653 AGCAAAAGATTTGCCTCATCCATTAA 60.071 34.615 20.66 0.00 45.98 1.40
542 557 5.422970 AGCAAAAGATTTGCCTCATCCATTA 59.577 36.000 20.66 0.00 45.98 1.90
543 558 4.224370 AGCAAAAGATTTGCCTCATCCATT 59.776 37.500 20.66 0.48 45.98 3.16
544 559 3.773119 AGCAAAAGATTTGCCTCATCCAT 59.227 39.130 20.66 1.12 45.98 3.41
545 560 3.167485 AGCAAAAGATTTGCCTCATCCA 58.833 40.909 20.66 0.00 45.98 3.41
546 561 3.881937 AGCAAAAGATTTGCCTCATCC 57.118 42.857 20.66 0.00 45.98 3.51
547 562 4.179298 GGAAGCAAAAGATTTGCCTCATC 58.821 43.478 21.35 15.34 45.98 2.92
548 563 3.579586 TGGAAGCAAAAGATTTGCCTCAT 59.420 39.130 21.35 9.54 45.98 2.90
549 564 2.964464 TGGAAGCAAAAGATTTGCCTCA 59.036 40.909 21.35 15.38 45.98 3.86
550 565 3.665745 TGGAAGCAAAAGATTTGCCTC 57.334 42.857 20.66 17.65 45.98 4.70
551 566 3.836562 AGATGGAAGCAAAAGATTTGCCT 59.163 39.130 20.66 10.82 45.98 4.75
552 567 4.179298 GAGATGGAAGCAAAAGATTTGCC 58.821 43.478 20.66 9.17 45.98 4.52
553 568 3.855950 CGAGATGGAAGCAAAAGATTTGC 59.144 43.478 17.62 17.62 45.22 3.68
554 569 5.300969 TCGAGATGGAAGCAAAAGATTTG 57.699 39.130 0.00 0.00 0.00 2.32
555 570 5.964958 TTCGAGATGGAAGCAAAAGATTT 57.035 34.783 0.00 0.00 0.00 2.17
556 571 5.964958 TTTCGAGATGGAAGCAAAAGATT 57.035 34.783 0.00 0.00 0.00 2.40
557 572 5.964958 TTTTCGAGATGGAAGCAAAAGAT 57.035 34.783 0.00 0.00 0.00 2.40
558 573 5.766150 TTTTTCGAGATGGAAGCAAAAGA 57.234 34.783 0.00 0.00 0.00 2.52
600 615 9.753674 TCCTCCAATGACAGATTATTACTTTTT 57.246 29.630 0.00 0.00 0.00 1.94
601 616 9.178758 GTCCTCCAATGACAGATTATTACTTTT 57.821 33.333 0.00 0.00 32.91 2.27
602 617 8.328758 TGTCCTCCAATGACAGATTATTACTTT 58.671 33.333 0.00 0.00 37.80 2.66
603 618 7.861629 TGTCCTCCAATGACAGATTATTACTT 58.138 34.615 0.00 0.00 37.80 2.24
604 619 7.437713 TGTCCTCCAATGACAGATTATTACT 57.562 36.000 0.00 0.00 37.80 2.24
605 620 7.308229 GCATGTCCTCCAATGACAGATTATTAC 60.308 40.741 0.00 0.00 45.20 1.89
606 621 6.712095 GCATGTCCTCCAATGACAGATTATTA 59.288 38.462 0.00 0.00 45.20 0.98
607 622 5.533903 GCATGTCCTCCAATGACAGATTATT 59.466 40.000 0.00 0.00 45.20 1.40
608 623 5.068636 GCATGTCCTCCAATGACAGATTAT 58.931 41.667 0.00 0.00 45.20 1.28
609 624 4.164796 AGCATGTCCTCCAATGACAGATTA 59.835 41.667 0.00 0.00 45.20 1.75
610 625 3.053842 AGCATGTCCTCCAATGACAGATT 60.054 43.478 0.00 0.00 45.20 2.40
611 626 2.508716 AGCATGTCCTCCAATGACAGAT 59.491 45.455 0.00 0.00 45.20 2.90
612 627 1.911357 AGCATGTCCTCCAATGACAGA 59.089 47.619 0.00 0.00 45.20 3.41
698 753 2.927580 GCCGGGTGTCGTCTTCTGA 61.928 63.158 2.18 0.00 37.11 3.27
699 754 2.432628 GCCGGGTGTCGTCTTCTG 60.433 66.667 2.18 0.00 37.11 3.02
781 838 0.962356 ACATGGCCGAAAGCTTGGAG 60.962 55.000 0.00 0.00 43.05 3.86
826 883 1.787057 GACGGTCGAGATGGCGATCT 61.787 60.000 11.42 11.42 42.82 2.75
923 988 0.594602 GCTGAGTGCTGTGATTTGCA 59.405 50.000 0.00 0.00 38.95 4.08
938 1003 4.314440 GGTGGTGGCTCGTGCTGA 62.314 66.667 9.61 0.00 39.59 4.26
942 1007 3.041940 GAACGGTGGTGGCTCGTG 61.042 66.667 0.00 0.00 37.20 4.35
945 1014 2.047179 GAGGAACGGTGGTGGCTC 60.047 66.667 0.00 0.00 0.00 4.70
991 1087 4.838152 CCCGGACATGGCTGACGG 62.838 72.222 9.68 8.52 42.17 4.79
1395 1533 5.164233 TCAGTTCGAGCTACAGAGAAAATG 58.836 41.667 0.00 0.00 0.00 2.32
1621 1822 2.346766 ATTGTTCAGTCACTGTGGCA 57.653 45.000 15.58 0.00 32.61 4.92
1663 1864 6.149973 TCAAATAGCAGAAACAGATCAAGTGG 59.850 38.462 0.00 0.00 0.00 4.00
1666 1867 8.123575 CAGATCAAATAGCAGAAACAGATCAAG 58.876 37.037 0.00 0.00 34.58 3.02
1670 1871 6.318144 CACCAGATCAAATAGCAGAAACAGAT 59.682 38.462 0.00 0.00 0.00 2.90
1697 1898 7.391148 AACATCAATGGTGTCCAGTATAAAC 57.609 36.000 0.00 0.00 36.75 2.01
1796 2022 1.331138 AGAACTCTCGTCGCGAATAGG 59.669 52.381 12.06 7.99 34.74 2.57
1801 2027 2.687805 CCCAGAACTCTCGTCGCGA 61.688 63.158 3.71 3.71 0.00 5.87
1803 2029 1.137825 CTCCCAGAACTCTCGTCGC 59.862 63.158 0.00 0.00 0.00 5.19
1804 2030 1.397692 GTACTCCCAGAACTCTCGTCG 59.602 57.143 0.00 0.00 0.00 5.12
1820 2046 6.058183 ACAAGTCAGAGAGCAAATTTGTACT 58.942 36.000 19.03 16.91 0.00 2.73
1858 2087 4.263639 ACCTCATGAATTGGTCACTGTGAT 60.264 41.667 14.37 0.00 39.72 3.06
1879 2108 1.866925 GCAGTTAGCACGAACCACC 59.133 57.895 0.00 0.00 44.79 4.61
2032 2435 3.777106 ACTGAAGGATGAAGTTGCTGA 57.223 42.857 0.00 0.00 0.00 4.26
2076 2549 9.965902 ATCATGTCTTCTAAAGAAATACTGGTT 57.034 29.630 0.00 0.00 39.67 3.67
2088 2561 9.817809 GGTGACTTATGTATCATGTCTTCTAAA 57.182 33.333 0.00 0.00 0.00 1.85
2090 2563 8.414003 GTGGTGACTTATGTATCATGTCTTCTA 58.586 37.037 0.00 0.00 0.00 2.10
2109 2582 2.033448 TGGCGGAATGGTGGTGAC 59.967 61.111 0.00 0.00 0.00 3.67
2170 2645 4.439305 TGATGGCTAATTTGCTGTGAAC 57.561 40.909 11.61 0.00 0.00 3.18
2226 2709 9.809096 CTCTAATGAGCAGACTTCTTTTGTATA 57.191 33.333 0.00 0.00 33.12 1.47
2227 2710 8.535335 TCTCTAATGAGCAGACTTCTTTTGTAT 58.465 33.333 0.00 0.00 40.03 2.29
2228 2711 7.896811 TCTCTAATGAGCAGACTTCTTTTGTA 58.103 34.615 0.00 0.00 40.03 2.41
2229 2712 6.763355 TCTCTAATGAGCAGACTTCTTTTGT 58.237 36.000 0.00 0.00 40.03 2.83
2230 2713 7.664082 TTCTCTAATGAGCAGACTTCTTTTG 57.336 36.000 0.00 0.00 40.03 2.44
2231 2714 9.950496 TTATTCTCTAATGAGCAGACTTCTTTT 57.050 29.630 0.00 0.00 40.03 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.