Multiple sequence alignment - TraesCS3D01G150100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G150100 chr3D 100.000 3080 0 0 1 3080 114806704 114803625 0.000000e+00 5688
1 TraesCS3D01G150100 chr3B 97.539 1219 30 0 888 2106 166127727 166128945 0.000000e+00 2085
2 TraesCS3D01G150100 chr3B 92.368 380 18 3 2210 2579 166129091 166129469 5.850000e-147 531
3 TraesCS3D01G150100 chr3B 91.447 304 19 2 2708 3011 166131565 166131861 7.950000e-111 411
4 TraesCS3D01G150100 chr3B 89.711 311 28 2 467 773 166125690 166126000 8.010000e-106 394
5 TraesCS3D01G150100 chr3B 94.937 79 4 0 2576 2654 166129760 166129838 1.160000e-24 124
6 TraesCS3D01G150100 chr3B 89.247 93 8 2 2988 3080 4446668 4446578 6.980000e-22 115
7 TraesCS3D01G150100 chr3A 92.176 1406 75 13 796 2176 111090224 111088829 0.000000e+00 1954
8 TraesCS3D01G150100 chr3A 97.222 72 2 0 3009 3080 111736820 111736749 4.170000e-24 122
9 TraesCS3D01G150100 chr6A 96.250 80 2 1 3002 3080 141356661 141356582 2.490000e-26 130
10 TraesCS3D01G150100 chr5D 93.976 83 3 2 2999 3080 107761453 107761372 1.160000e-24 124
11 TraesCS3D01G150100 chr5A 93.976 83 4 1 2998 3080 44417888 44417807 1.160000e-24 124
12 TraesCS3D01G150100 chr5A 91.954 87 6 1 2994 3080 231215820 231215905 1.500000e-23 121
13 TraesCS3D01G150100 chr2D 90.323 93 7 2 2989 3080 151980353 151980262 1.500000e-23 121
14 TraesCS3D01G150100 chr2D 89.247 93 8 2 2988 3080 88902409 88902319 6.980000e-22 115
15 TraesCS3D01G150100 chr1B 90.110 91 7 2 2992 3080 350720943 350720853 1.940000e-22 117
16 TraesCS3D01G150100 chr1A 91.463 82 6 1 15 95 61716401 61716482 9.030000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G150100 chr3D 114803625 114806704 3079 True 5688 5688 100.0000 1 3080 1 chr3D.!!$R1 3079
1 TraesCS3D01G150100 chr3B 166125690 166131861 6171 False 709 2085 93.2004 467 3011 5 chr3B.!!$F1 2544
2 TraesCS3D01G150100 chr3A 111088829 111090224 1395 True 1954 1954 92.1760 796 2176 1 chr3A.!!$R1 1380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.036483 TCATGCCTGTTTAGCGAGCA 60.036 50.0 0.0 0.0 37.94 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 3907 0.875059 GGTAAGGCTGGCGCATAATC 59.125 55.0 10.83 0.0 38.1 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.710437 CAAATGTGCTTTCGAAATGCC 57.290 42.857 21.51 15.74 0.00 4.40
21 22 3.058450 CAAATGTGCTTTCGAAATGCCA 58.942 40.909 21.51 19.03 0.00 4.92
22 23 3.598019 AATGTGCTTTCGAAATGCCAT 57.402 38.095 21.51 19.91 0.00 4.40
23 24 3.598019 ATGTGCTTTCGAAATGCCATT 57.402 38.095 21.51 9.43 0.00 3.16
24 25 2.674954 TGTGCTTTCGAAATGCCATTG 58.325 42.857 21.51 7.89 0.00 2.82
25 26 1.391144 GTGCTTTCGAAATGCCATTGC 59.609 47.619 21.51 15.75 38.26 3.56
26 27 0.641783 GCTTTCGAAATGCCATTGCG 59.358 50.000 11.70 11.70 42.69 4.85
27 28 1.270971 CTTTCGAAATGCCATTGCGG 58.729 50.000 17.43 0.00 41.64 5.69
28 29 0.108898 TTTCGAAATGCCATTGCGGG 60.109 50.000 17.43 0.00 41.64 6.13
29 30 1.247419 TTCGAAATGCCATTGCGGGT 61.247 50.000 17.43 0.00 41.64 5.28
30 31 0.393132 TCGAAATGCCATTGCGGGTA 60.393 50.000 17.43 0.00 41.64 3.69
31 32 0.453793 CGAAATGCCATTGCGGGTAA 59.546 50.000 10.06 0.00 41.78 2.85
32 33 1.135257 CGAAATGCCATTGCGGGTAAA 60.135 47.619 10.06 0.00 41.78 2.01
33 34 2.672478 CGAAATGCCATTGCGGGTAAAA 60.672 45.455 10.06 0.00 41.78 1.52
34 35 3.530535 GAAATGCCATTGCGGGTAAAAT 58.469 40.909 0.00 0.00 41.78 1.82
35 36 2.600470 ATGCCATTGCGGGTAAAATG 57.400 45.000 0.00 0.00 41.78 2.32
36 37 0.108424 TGCCATTGCGGGTAAAATGC 60.108 50.000 0.00 0.00 41.78 3.56
37 38 0.809636 GCCATTGCGGGTAAAATGCC 60.810 55.000 0.00 0.00 33.34 4.40
38 39 0.534412 CCATTGCGGGTAAAATGCCA 59.466 50.000 0.00 0.00 33.34 4.92
39 40 1.639280 CATTGCGGGTAAAATGCCAC 58.361 50.000 0.00 0.00 0.00 5.01
40 41 0.172352 ATTGCGGGTAAAATGCCACG 59.828 50.000 0.00 0.00 0.00 4.94
41 42 2.202557 GCGGGTAAAATGCCACGC 60.203 61.111 0.00 0.00 38.05 5.34
42 43 2.696759 GCGGGTAAAATGCCACGCT 61.697 57.895 11.04 0.00 40.19 5.07
43 44 1.370587 GCGGGTAAAATGCCACGCTA 61.371 55.000 11.04 0.00 40.19 4.26
44 45 1.305201 CGGGTAAAATGCCACGCTAT 58.695 50.000 0.00 0.00 0.00 2.97
45 46 1.002900 CGGGTAAAATGCCACGCTATG 60.003 52.381 0.00 0.00 0.00 2.23
46 47 2.294074 GGGTAAAATGCCACGCTATGA 58.706 47.619 0.00 0.00 0.00 2.15
47 48 2.685897 GGGTAAAATGCCACGCTATGAA 59.314 45.455 0.00 0.00 0.00 2.57
48 49 3.243068 GGGTAAAATGCCACGCTATGAAG 60.243 47.826 0.00 0.00 0.00 3.02
49 50 3.377172 GGTAAAATGCCACGCTATGAAGT 59.623 43.478 0.00 0.00 0.00 3.01
50 51 3.764885 AAAATGCCACGCTATGAAGTC 57.235 42.857 0.00 0.00 0.00 3.01
51 52 2.401583 AATGCCACGCTATGAAGTCA 57.598 45.000 0.00 0.00 0.00 3.41
52 53 2.627515 ATGCCACGCTATGAAGTCAT 57.372 45.000 0.00 0.00 40.22 3.06
53 54 1.939974 TGCCACGCTATGAAGTCATC 58.060 50.000 0.00 0.00 37.76 2.92
54 55 1.206849 TGCCACGCTATGAAGTCATCA 59.793 47.619 0.00 0.00 43.67 3.07
55 56 2.279741 GCCACGCTATGAAGTCATCAA 58.720 47.619 0.00 0.00 42.54 2.57
56 57 2.677836 GCCACGCTATGAAGTCATCAAA 59.322 45.455 0.00 0.00 42.54 2.69
57 58 3.485877 GCCACGCTATGAAGTCATCAAAC 60.486 47.826 0.00 0.00 42.54 2.93
58 59 3.242091 CCACGCTATGAAGTCATCAAACG 60.242 47.826 0.00 1.15 42.54 3.60
59 60 2.348666 ACGCTATGAAGTCATCAAACGC 59.651 45.455 0.00 0.00 42.54 4.84
60 61 2.285834 CGCTATGAAGTCATCAAACGCC 60.286 50.000 0.00 0.00 42.54 5.68
61 62 2.677836 GCTATGAAGTCATCAAACGCCA 59.322 45.455 0.00 0.00 42.54 5.69
62 63 3.313526 GCTATGAAGTCATCAAACGCCAT 59.686 43.478 0.00 0.00 42.54 4.40
63 64 3.770263 ATGAAGTCATCAAACGCCATG 57.230 42.857 0.00 0.00 42.54 3.66
64 65 2.503331 TGAAGTCATCAAACGCCATGT 58.497 42.857 0.00 0.00 34.30 3.21
65 66 3.669536 TGAAGTCATCAAACGCCATGTA 58.330 40.909 0.00 0.00 34.30 2.29
66 67 4.068599 TGAAGTCATCAAACGCCATGTAA 58.931 39.130 0.00 0.00 34.30 2.41
67 68 4.699735 TGAAGTCATCAAACGCCATGTAAT 59.300 37.500 0.00 0.00 34.30 1.89
68 69 5.182950 TGAAGTCATCAAACGCCATGTAATT 59.817 36.000 0.00 0.00 34.30 1.40
69 70 5.643379 AGTCATCAAACGCCATGTAATTT 57.357 34.783 0.00 0.00 0.00 1.82
70 71 6.751514 AGTCATCAAACGCCATGTAATTTA 57.248 33.333 0.00 0.00 0.00 1.40
71 72 6.785191 AGTCATCAAACGCCATGTAATTTAG 58.215 36.000 0.00 0.00 0.00 1.85
72 73 6.374333 AGTCATCAAACGCCATGTAATTTAGT 59.626 34.615 0.00 0.00 0.00 2.24
73 74 6.468956 GTCATCAAACGCCATGTAATTTAGTG 59.531 38.462 0.00 0.00 0.00 2.74
74 75 5.303747 TCAAACGCCATGTAATTTAGTGG 57.696 39.130 0.00 4.23 34.84 4.00
75 76 4.762765 TCAAACGCCATGTAATTTAGTGGT 59.237 37.500 8.70 0.00 34.23 4.16
76 77 5.938710 TCAAACGCCATGTAATTTAGTGGTA 59.061 36.000 8.70 0.00 34.23 3.25
77 78 6.600032 TCAAACGCCATGTAATTTAGTGGTAT 59.400 34.615 8.70 0.00 34.23 2.73
78 79 7.769507 TCAAACGCCATGTAATTTAGTGGTATA 59.230 33.333 8.70 0.00 34.23 1.47
79 80 7.486802 AACGCCATGTAATTTAGTGGTATAC 57.513 36.000 0.00 0.00 34.23 1.47
80 81 5.993441 ACGCCATGTAATTTAGTGGTATACC 59.007 40.000 15.50 15.50 34.23 2.73
81 82 6.183361 ACGCCATGTAATTTAGTGGTATACCT 60.183 38.462 22.41 6.19 36.82 3.08
82 83 7.015487 ACGCCATGTAATTTAGTGGTATACCTA 59.985 37.037 22.41 5.15 36.82 3.08
83 84 7.544566 CGCCATGTAATTTAGTGGTATACCTAG 59.455 40.741 22.41 0.00 36.82 3.02
84 85 8.591072 GCCATGTAATTTAGTGGTATACCTAGA 58.409 37.037 22.41 3.87 36.82 2.43
92 93 7.756395 TTAGTGGTATACCTAGAATTCTCCG 57.244 40.000 22.41 5.70 36.82 4.63
93 94 5.078256 AGTGGTATACCTAGAATTCTCCGG 58.922 45.833 22.41 15.69 36.82 5.14
94 95 5.075493 GTGGTATACCTAGAATTCTCCGGA 58.925 45.833 22.41 2.93 36.82 5.14
95 96 5.183522 GTGGTATACCTAGAATTCTCCGGAG 59.816 48.000 26.32 26.32 36.82 4.63
96 97 5.751128 TGGTATACCTAGAATTCTCCGGAGG 60.751 48.000 30.80 20.41 43.79 4.30
110 111 0.665835 CGGAGGAGACAAGGATCTCG 59.334 60.000 0.00 0.00 45.27 4.04
111 112 1.770294 GGAGGAGACAAGGATCTCGT 58.230 55.000 0.00 0.00 45.27 4.18
113 114 1.770294 AGGAGACAAGGATCTCGTCC 58.230 55.000 0.00 0.00 45.27 4.79
120 121 4.035843 GGATCTCGTCCCACTGGT 57.964 61.111 0.00 0.00 41.50 4.00
121 122 1.817209 GGATCTCGTCCCACTGGTC 59.183 63.158 0.00 0.00 41.50 4.02
122 123 0.970937 GGATCTCGTCCCACTGGTCA 60.971 60.000 0.00 0.00 41.50 4.02
123 124 0.457851 GATCTCGTCCCACTGGTCAG 59.542 60.000 0.00 0.00 0.00 3.51
124 125 0.251832 ATCTCGTCCCACTGGTCAGT 60.252 55.000 0.00 0.00 43.61 3.41
132 133 2.621115 ACTGGTCAGTGGAGGGGT 59.379 61.111 2.46 0.00 40.75 4.95
133 134 1.536662 ACTGGTCAGTGGAGGGGTC 60.537 63.158 2.46 0.00 40.75 4.46
134 135 1.536418 CTGGTCAGTGGAGGGGTCA 60.536 63.158 0.00 0.00 0.00 4.02
135 136 1.074090 TGGTCAGTGGAGGGGTCAA 60.074 57.895 0.00 0.00 0.00 3.18
136 137 0.475632 TGGTCAGTGGAGGGGTCAAT 60.476 55.000 0.00 0.00 0.00 2.57
137 138 0.698818 GGTCAGTGGAGGGGTCAATT 59.301 55.000 0.00 0.00 0.00 2.32
138 139 1.913419 GGTCAGTGGAGGGGTCAATTA 59.087 52.381 0.00 0.00 0.00 1.40
139 140 2.307686 GGTCAGTGGAGGGGTCAATTAA 59.692 50.000 0.00 0.00 0.00 1.40
140 141 3.053619 GGTCAGTGGAGGGGTCAATTAAT 60.054 47.826 0.00 0.00 0.00 1.40
141 142 4.569865 GGTCAGTGGAGGGGTCAATTAATT 60.570 45.833 0.00 0.00 0.00 1.40
142 143 5.016831 GTCAGTGGAGGGGTCAATTAATTT 58.983 41.667 0.00 0.00 0.00 1.82
143 144 6.184789 GTCAGTGGAGGGGTCAATTAATTTA 58.815 40.000 0.00 0.00 0.00 1.40
144 145 6.095021 GTCAGTGGAGGGGTCAATTAATTTAC 59.905 42.308 0.00 0.68 0.00 2.01
145 146 6.011981 TCAGTGGAGGGGTCAATTAATTTACT 60.012 38.462 11.32 0.90 0.00 2.24
146 147 7.183112 TCAGTGGAGGGGTCAATTAATTTACTA 59.817 37.037 11.32 0.00 0.00 1.82
147 148 7.832187 CAGTGGAGGGGTCAATTAATTTACTAA 59.168 37.037 11.32 0.00 0.00 2.24
148 149 7.832685 AGTGGAGGGGTCAATTAATTTACTAAC 59.167 37.037 11.32 4.09 0.00 2.34
149 150 7.067859 GTGGAGGGGTCAATTAATTTACTAACC 59.932 40.741 11.32 10.94 0.00 2.85
150 151 7.036425 TGGAGGGGTCAATTAATTTACTAACCT 60.036 37.037 16.56 16.56 0.00 3.50
151 152 7.837689 GGAGGGGTCAATTAATTTACTAACCTT 59.162 37.037 17.15 7.52 0.00 3.50
152 153 9.910267 GAGGGGTCAATTAATTTACTAACCTTA 57.090 33.333 17.15 0.00 0.00 2.69
171 172 8.843885 AACCTTAAATAAGAGTACTTGACCAC 57.156 34.615 0.00 0.00 37.53 4.16
172 173 7.095270 ACCTTAAATAAGAGTACTTGACCACG 58.905 38.462 0.00 0.00 37.53 4.94
173 174 6.035758 CCTTAAATAAGAGTACTTGACCACGC 59.964 42.308 0.00 0.00 37.53 5.34
174 175 4.803098 AATAAGAGTACTTGACCACGCT 57.197 40.909 0.00 0.00 37.53 5.07
175 176 2.440539 AAGAGTACTTGACCACGCTG 57.559 50.000 0.00 0.00 34.80 5.18
176 177 0.603569 AGAGTACTTGACCACGCTGG 59.396 55.000 0.00 2.92 45.02 4.85
177 178 0.389948 GAGTACTTGACCACGCTGGG 60.390 60.000 0.00 0.00 43.37 4.45
178 179 0.830444 AGTACTTGACCACGCTGGGA 60.830 55.000 8.57 0.00 43.37 4.37
179 180 0.249398 GTACTTGACCACGCTGGGAT 59.751 55.000 8.57 0.00 43.37 3.85
180 181 1.479323 GTACTTGACCACGCTGGGATA 59.521 52.381 8.57 0.00 43.37 2.59
181 182 1.204146 ACTTGACCACGCTGGGATAT 58.796 50.000 8.57 0.00 43.37 1.63
182 183 1.134401 ACTTGACCACGCTGGGATATG 60.134 52.381 8.57 0.00 43.37 1.78
183 184 1.138859 CTTGACCACGCTGGGATATGA 59.861 52.381 8.57 0.00 43.37 2.15
184 185 0.464036 TGACCACGCTGGGATATGAC 59.536 55.000 8.57 0.00 43.37 3.06
185 186 0.249911 GACCACGCTGGGATATGACC 60.250 60.000 8.57 0.00 43.37 4.02
186 187 0.691078 ACCACGCTGGGATATGACCT 60.691 55.000 8.57 0.00 43.37 3.85
187 188 0.469917 CCACGCTGGGATATGACCTT 59.530 55.000 0.00 0.00 32.67 3.50
188 189 1.541233 CCACGCTGGGATATGACCTTC 60.541 57.143 0.00 0.00 32.67 3.46
189 190 0.759346 ACGCTGGGATATGACCTTCC 59.241 55.000 0.00 0.00 0.00 3.46
190 191 1.051812 CGCTGGGATATGACCTTCCT 58.948 55.000 0.00 0.00 32.34 3.36
191 192 1.270518 CGCTGGGATATGACCTTCCTG 60.271 57.143 0.00 0.00 32.34 3.86
192 193 1.771255 GCTGGGATATGACCTTCCTGT 59.229 52.381 0.00 0.00 32.34 4.00
193 194 2.173569 GCTGGGATATGACCTTCCTGTT 59.826 50.000 0.00 0.00 32.34 3.16
194 195 3.391296 GCTGGGATATGACCTTCCTGTTA 59.609 47.826 0.00 0.00 32.34 2.41
195 196 4.503991 GCTGGGATATGACCTTCCTGTTAG 60.504 50.000 0.00 0.00 32.34 2.34
196 197 3.973973 TGGGATATGACCTTCCTGTTAGG 59.026 47.826 0.00 0.00 38.79 2.69
197 198 4.232091 GGGATATGACCTTCCTGTTAGGA 58.768 47.826 0.00 0.00 44.10 2.94
198 199 4.040584 GGGATATGACCTTCCTGTTAGGAC 59.959 50.000 0.00 0.00 45.78 3.85
199 200 4.902448 GGATATGACCTTCCTGTTAGGACT 59.098 45.833 0.00 0.00 45.78 3.85
200 201 6.075984 GGATATGACCTTCCTGTTAGGACTA 58.924 44.000 0.00 0.00 45.78 2.59
201 202 6.015265 GGATATGACCTTCCTGTTAGGACTAC 60.015 46.154 0.00 0.00 45.78 2.73
202 203 4.399483 TGACCTTCCTGTTAGGACTACT 57.601 45.455 0.00 0.00 45.78 2.57
203 204 5.525454 TGACCTTCCTGTTAGGACTACTA 57.475 43.478 0.00 0.00 45.78 1.82
204 205 5.507637 TGACCTTCCTGTTAGGACTACTAG 58.492 45.833 0.00 0.00 45.78 2.57
205 206 4.869451 ACCTTCCTGTTAGGACTACTAGG 58.131 47.826 9.83 9.83 45.78 3.02
206 207 4.543337 ACCTTCCTGTTAGGACTACTAGGA 59.457 45.833 15.88 6.65 45.78 2.94
207 208 5.016031 ACCTTCCTGTTAGGACTACTAGGAA 59.984 44.000 15.88 16.45 45.78 3.36
208 209 6.137559 CCTTCCTGTTAGGACTACTAGGAAT 58.862 44.000 17.17 0.00 45.78 3.01
209 210 6.265876 CCTTCCTGTTAGGACTACTAGGAATC 59.734 46.154 17.17 0.00 45.78 2.52
210 211 5.703310 TCCTGTTAGGACTACTAGGAATCC 58.297 45.833 0.00 0.00 40.06 3.01
211 212 5.195146 TCCTGTTAGGACTACTAGGAATCCA 59.805 44.000 5.00 0.00 40.06 3.41
212 213 6.078664 CCTGTTAGGACTACTAGGAATCCAT 58.921 44.000 5.00 0.00 37.67 3.41
213 214 6.015010 CCTGTTAGGACTACTAGGAATCCATG 60.015 46.154 5.00 0.00 37.67 3.66
214 215 5.839063 TGTTAGGACTACTAGGAATCCATGG 59.161 44.000 5.00 4.97 33.33 3.66
215 216 4.834406 AGGACTACTAGGAATCCATGGA 57.166 45.455 18.88 18.88 33.33 3.41
216 217 5.361630 AGGACTACTAGGAATCCATGGAT 57.638 43.478 22.15 22.15 36.23 3.41
217 218 5.337788 AGGACTACTAGGAATCCATGGATC 58.662 45.833 27.45 19.06 33.08 3.36
218 219 4.158764 GGACTACTAGGAATCCATGGATCG 59.841 50.000 27.45 15.04 33.08 3.69
219 220 4.999310 ACTACTAGGAATCCATGGATCGA 58.001 43.478 27.45 11.38 33.08 3.59
220 221 5.584913 ACTACTAGGAATCCATGGATCGAT 58.415 41.667 27.45 17.27 33.08 3.59
221 222 5.654650 ACTACTAGGAATCCATGGATCGATC 59.345 44.000 27.45 20.12 33.08 3.69
238 239 8.961294 GGATCGATCCAAATATTGAGATTTTG 57.039 34.615 34.65 0.00 46.38 2.44
239 240 8.571336 GGATCGATCCAAATATTGAGATTTTGT 58.429 33.333 34.65 0.00 46.38 2.83
240 241 9.956720 GATCGATCCAAATATTGAGATTTTGTT 57.043 29.630 14.76 0.00 0.00 2.83
241 242 9.956720 ATCGATCCAAATATTGAGATTTTGTTC 57.043 29.630 0.00 0.00 0.00 3.18
242 243 8.955388 TCGATCCAAATATTGAGATTTTGTTCA 58.045 29.630 0.00 0.00 0.00 3.18
243 244 9.740239 CGATCCAAATATTGAGATTTTGTTCAT 57.260 29.630 0.00 0.00 0.00 2.57
254 255 9.554724 TTGAGATTTTGTTCATCTTTAATACGC 57.445 29.630 0.00 0.00 30.70 4.42
255 256 8.946085 TGAGATTTTGTTCATCTTTAATACGCT 58.054 29.630 0.00 0.00 30.70 5.07
262 263 8.825667 TGTTCATCTTTAATACGCTATATGCA 57.174 30.769 0.00 0.00 43.06 3.96
263 264 9.435688 TGTTCATCTTTAATACGCTATATGCAT 57.564 29.630 3.79 3.79 43.06 3.96
264 265 9.907576 GTTCATCTTTAATACGCTATATGCATC 57.092 33.333 0.19 0.00 43.06 3.91
265 266 8.648557 TCATCTTTAATACGCTATATGCATCC 57.351 34.615 0.19 0.00 43.06 3.51
266 267 8.478066 TCATCTTTAATACGCTATATGCATCCT 58.522 33.333 0.19 0.00 43.06 3.24
267 268 9.102757 CATCTTTAATACGCTATATGCATCCTT 57.897 33.333 0.19 0.00 43.06 3.36
268 269 9.672673 ATCTTTAATACGCTATATGCATCCTTT 57.327 29.630 0.19 0.00 43.06 3.11
269 270 9.151471 TCTTTAATACGCTATATGCATCCTTTC 57.849 33.333 0.19 0.00 43.06 2.62
270 271 9.155975 CTTTAATACGCTATATGCATCCTTTCT 57.844 33.333 0.19 0.00 43.06 2.52
271 272 6.974932 AATACGCTATATGCATCCTTTCTG 57.025 37.500 0.19 0.00 43.06 3.02
272 273 4.342862 ACGCTATATGCATCCTTTCTGT 57.657 40.909 0.19 0.00 43.06 3.41
273 274 5.468540 ACGCTATATGCATCCTTTCTGTA 57.531 39.130 0.19 0.00 43.06 2.74
274 275 5.853936 ACGCTATATGCATCCTTTCTGTAA 58.146 37.500 0.19 0.00 43.06 2.41
275 276 6.467677 ACGCTATATGCATCCTTTCTGTAAT 58.532 36.000 0.19 0.00 43.06 1.89
276 277 6.369890 ACGCTATATGCATCCTTTCTGTAATG 59.630 38.462 0.19 0.00 43.06 1.90
277 278 6.369890 CGCTATATGCATCCTTTCTGTAATGT 59.630 38.462 0.19 0.00 43.06 2.71
278 279 7.095060 CGCTATATGCATCCTTTCTGTAATGTT 60.095 37.037 0.19 0.00 43.06 2.71
279 280 8.571336 GCTATATGCATCCTTTCTGTAATGTTT 58.429 33.333 0.19 0.00 42.31 2.83
280 281 9.888878 CTATATGCATCCTTTCTGTAATGTTTG 57.111 33.333 0.19 0.00 0.00 2.93
281 282 5.389859 TGCATCCTTTCTGTAATGTTTGG 57.610 39.130 0.00 0.00 0.00 3.28
282 283 5.076182 TGCATCCTTTCTGTAATGTTTGGA 58.924 37.500 0.00 0.00 0.00 3.53
283 284 5.716228 TGCATCCTTTCTGTAATGTTTGGAT 59.284 36.000 0.00 0.00 33.85 3.41
284 285 6.127647 TGCATCCTTTCTGTAATGTTTGGATC 60.128 38.462 0.00 0.00 31.52 3.36
285 286 6.681368 GCATCCTTTCTGTAATGTTTGGATCC 60.681 42.308 4.20 4.20 31.52 3.36
286 287 6.139679 TCCTTTCTGTAATGTTTGGATCCT 57.860 37.500 14.23 0.00 0.00 3.24
287 288 6.552008 TCCTTTCTGTAATGTTTGGATCCTT 58.448 36.000 14.23 0.41 0.00 3.36
288 289 6.434028 TCCTTTCTGTAATGTTTGGATCCTTG 59.566 38.462 14.23 0.00 0.00 3.61
289 290 5.643379 TTCTGTAATGTTTGGATCCTTGC 57.357 39.130 14.23 2.53 0.00 4.01
290 291 4.016444 TCTGTAATGTTTGGATCCTTGCC 58.984 43.478 14.23 0.00 0.00 4.52
291 292 3.096092 TGTAATGTTTGGATCCTTGCCC 58.904 45.455 14.23 0.00 0.00 5.36
292 293 2.323999 AATGTTTGGATCCTTGCCCA 57.676 45.000 14.23 3.10 0.00 5.36
293 294 2.555732 ATGTTTGGATCCTTGCCCAT 57.444 45.000 14.23 5.34 31.66 4.00
294 295 3.686227 ATGTTTGGATCCTTGCCCATA 57.314 42.857 14.23 0.00 31.66 2.74
295 296 3.017048 TGTTTGGATCCTTGCCCATAG 57.983 47.619 14.23 0.00 31.66 2.23
296 297 2.310538 GTTTGGATCCTTGCCCATAGG 58.689 52.381 14.23 0.00 31.66 2.57
319 320 5.045872 GCTTTGCCATGTAAATGAAGATCC 58.954 41.667 0.00 0.00 0.00 3.36
320 321 5.394443 GCTTTGCCATGTAAATGAAGATCCA 60.394 40.000 0.00 0.00 0.00 3.41
321 322 6.684613 GCTTTGCCATGTAAATGAAGATCCAT 60.685 38.462 0.00 0.00 0.00 3.41
322 323 6.395426 TTGCCATGTAAATGAAGATCCATC 57.605 37.500 0.00 0.00 0.00 3.51
323 324 5.698104 TGCCATGTAAATGAAGATCCATCT 58.302 37.500 0.00 0.00 39.22 2.90
325 326 6.608405 TGCCATGTAAATGAAGATCCATCTTT 59.392 34.615 3.31 0.00 46.47 2.52
326 327 7.124599 TGCCATGTAAATGAAGATCCATCTTTT 59.875 33.333 3.31 11.98 46.47 2.27
327 328 7.437267 GCCATGTAAATGAAGATCCATCTTTTG 59.563 37.037 14.96 4.80 46.47 2.44
328 329 7.924412 CCATGTAAATGAAGATCCATCTTTTGG 59.076 37.037 14.96 8.38 46.47 3.28
336 337 4.743018 CATCTTTTGGACCCGCCT 57.257 55.556 0.00 0.00 37.63 5.52
337 338 2.961424 CATCTTTTGGACCCGCCTT 58.039 52.632 0.00 0.00 37.63 4.35
338 339 0.527565 CATCTTTTGGACCCGCCTTG 59.472 55.000 0.00 0.00 37.63 3.61
339 340 0.404040 ATCTTTTGGACCCGCCTTGA 59.596 50.000 0.00 0.00 37.63 3.02
340 341 0.250727 TCTTTTGGACCCGCCTTGAG 60.251 55.000 0.00 0.00 37.63 3.02
341 342 1.228429 TTTTGGACCCGCCTTGAGG 60.228 57.895 0.00 0.00 37.63 3.86
342 343 1.710996 TTTTGGACCCGCCTTGAGGA 61.711 55.000 0.06 0.00 37.39 3.71
343 344 2.406002 TTTGGACCCGCCTTGAGGAC 62.406 60.000 0.06 0.00 37.39 3.85
344 345 3.319198 GGACCCGCCTTGAGGACA 61.319 66.667 0.06 0.00 37.39 4.02
345 346 2.670148 GGACCCGCCTTGAGGACAT 61.670 63.158 0.06 0.00 37.39 3.06
346 347 1.299976 GACCCGCCTTGAGGACATT 59.700 57.895 0.06 0.00 37.39 2.71
347 348 0.539986 GACCCGCCTTGAGGACATTA 59.460 55.000 0.06 0.00 37.39 1.90
348 349 0.252197 ACCCGCCTTGAGGACATTAC 59.748 55.000 0.06 0.00 37.39 1.89
349 350 0.541863 CCCGCCTTGAGGACATTACT 59.458 55.000 0.06 0.00 37.39 2.24
350 351 1.656652 CCGCCTTGAGGACATTACTG 58.343 55.000 0.06 0.00 37.39 2.74
351 352 1.066143 CCGCCTTGAGGACATTACTGT 60.066 52.381 0.06 0.00 38.67 3.55
372 373 8.737168 ACTGTCTAGATAATATTTTGCTTGCA 57.263 30.769 0.00 0.00 0.00 4.08
373 374 8.834465 ACTGTCTAGATAATATTTTGCTTGCAG 58.166 33.333 0.00 0.00 0.00 4.41
374 375 8.962884 TGTCTAGATAATATTTTGCTTGCAGA 57.037 30.769 0.00 0.00 0.00 4.26
375 376 9.394767 TGTCTAGATAATATTTTGCTTGCAGAA 57.605 29.630 0.00 1.17 0.00 3.02
376 377 9.657121 GTCTAGATAATATTTTGCTTGCAGAAC 57.343 33.333 0.00 0.00 0.00 3.01
377 378 8.840321 TCTAGATAATATTTTGCTTGCAGAACC 58.160 33.333 0.68 0.00 0.00 3.62
378 379 6.498304 AGATAATATTTTGCTTGCAGAACCG 58.502 36.000 0.68 0.00 0.00 4.44
379 380 3.508744 ATATTTTGCTTGCAGAACCGG 57.491 42.857 0.00 0.00 0.00 5.28
380 381 0.318120 ATTTTGCTTGCAGAACCGGG 59.682 50.000 6.32 0.00 0.00 5.73
381 382 2.362329 TTTTGCTTGCAGAACCGGGC 62.362 55.000 6.32 0.00 0.00 6.13
382 383 4.577677 TGCTTGCAGAACCGGGCA 62.578 61.111 6.32 1.81 38.46 5.36
383 384 4.043200 GCTTGCAGAACCGGGCAC 62.043 66.667 6.32 0.00 40.23 5.01
384 385 2.594303 CTTGCAGAACCGGGCACA 60.594 61.111 6.32 0.00 40.23 4.57
385 386 2.904866 TTGCAGAACCGGGCACAC 60.905 61.111 6.32 0.00 40.23 3.82
386 387 4.947147 TGCAGAACCGGGCACACC 62.947 66.667 6.32 0.00 34.58 4.16
395 396 4.013702 GGGCACACCGAGAGTCTA 57.986 61.111 0.00 0.00 36.48 2.59
396 397 1.810532 GGGCACACCGAGAGTCTAG 59.189 63.158 0.00 0.00 36.48 2.43
397 398 0.680280 GGGCACACCGAGAGTCTAGA 60.680 60.000 1.24 0.00 36.48 2.43
398 399 1.174783 GGCACACCGAGAGTCTAGAA 58.825 55.000 1.24 0.00 0.00 2.10
399 400 1.544691 GGCACACCGAGAGTCTAGAAA 59.455 52.381 1.24 0.00 0.00 2.52
400 401 2.029290 GGCACACCGAGAGTCTAGAAAA 60.029 50.000 1.24 0.00 0.00 2.29
401 402 3.246619 GCACACCGAGAGTCTAGAAAAG 58.753 50.000 1.24 0.00 0.00 2.27
402 403 3.305471 GCACACCGAGAGTCTAGAAAAGT 60.305 47.826 1.24 0.00 0.00 2.66
403 404 4.230657 CACACCGAGAGTCTAGAAAAGTG 58.769 47.826 1.24 4.16 0.00 3.16
404 405 4.023107 CACACCGAGAGTCTAGAAAAGTGA 60.023 45.833 12.11 0.00 0.00 3.41
405 406 4.767928 ACACCGAGAGTCTAGAAAAGTGAT 59.232 41.667 12.11 0.00 0.00 3.06
406 407 5.106078 ACACCGAGAGTCTAGAAAAGTGATC 60.106 44.000 12.11 0.00 0.00 2.92
407 408 5.010933 ACCGAGAGTCTAGAAAAGTGATCA 58.989 41.667 1.24 0.00 0.00 2.92
408 409 5.477291 ACCGAGAGTCTAGAAAAGTGATCAA 59.523 40.000 0.00 0.00 0.00 2.57
409 410 5.802956 CCGAGAGTCTAGAAAAGTGATCAAC 59.197 44.000 0.00 0.00 0.00 3.18
410 411 6.349777 CCGAGAGTCTAGAAAAGTGATCAACT 60.350 42.308 0.00 0.00 42.60 3.16
411 412 7.148222 CCGAGAGTCTAGAAAAGTGATCAACTA 60.148 40.741 0.00 0.00 38.56 2.24
412 413 8.402472 CGAGAGTCTAGAAAAGTGATCAACTAT 58.598 37.037 0.00 0.00 38.56 2.12
413 414 9.730420 GAGAGTCTAGAAAAGTGATCAACTATC 57.270 37.037 0.00 0.00 38.56 2.08
414 415 9.249053 AGAGTCTAGAAAAGTGATCAACTATCA 57.751 33.333 0.00 0.00 42.48 2.15
416 417 9.814899 AGTCTAGAAAAGTGATCAACTATCATG 57.185 33.333 0.00 0.00 46.21 3.07
417 418 8.547069 GTCTAGAAAAGTGATCAACTATCATGC 58.453 37.037 0.00 0.00 46.21 4.06
418 419 6.690194 AGAAAAGTGATCAACTATCATGCC 57.310 37.500 0.00 0.00 46.21 4.40
419 420 6.421485 AGAAAAGTGATCAACTATCATGCCT 58.579 36.000 0.00 0.00 46.21 4.75
420 421 6.318144 AGAAAAGTGATCAACTATCATGCCTG 59.682 38.462 0.00 0.00 46.21 4.85
421 422 4.767578 AGTGATCAACTATCATGCCTGT 57.232 40.909 0.00 0.00 46.21 4.00
422 423 5.108187 AGTGATCAACTATCATGCCTGTT 57.892 39.130 0.00 0.00 46.21 3.16
423 424 5.503927 AGTGATCAACTATCATGCCTGTTT 58.496 37.500 0.00 0.00 46.21 2.83
424 425 6.653020 AGTGATCAACTATCATGCCTGTTTA 58.347 36.000 0.00 0.00 46.21 2.01
425 426 6.765036 AGTGATCAACTATCATGCCTGTTTAG 59.235 38.462 0.00 0.00 46.21 1.85
426 427 5.528690 TGATCAACTATCATGCCTGTTTAGC 59.471 40.000 0.00 0.00 39.77 3.09
427 428 3.871006 TCAACTATCATGCCTGTTTAGCG 59.129 43.478 0.00 0.00 0.00 4.26
428 429 3.819564 ACTATCATGCCTGTTTAGCGA 57.180 42.857 0.00 0.00 0.00 4.93
429 430 3.722147 ACTATCATGCCTGTTTAGCGAG 58.278 45.455 0.00 0.00 0.00 5.03
430 431 1.303309 ATCATGCCTGTTTAGCGAGC 58.697 50.000 0.00 0.00 0.00 5.03
431 432 0.036483 TCATGCCTGTTTAGCGAGCA 60.036 50.000 0.00 0.00 37.94 4.26
432 433 1.019673 CATGCCTGTTTAGCGAGCAT 58.980 50.000 0.00 0.00 44.66 3.79
433 434 2.158971 TCATGCCTGTTTAGCGAGCATA 60.159 45.455 0.00 0.00 42.04 3.14
434 435 2.620251 TGCCTGTTTAGCGAGCATAT 57.380 45.000 0.00 0.00 0.00 1.78
435 436 2.483876 TGCCTGTTTAGCGAGCATATC 58.516 47.619 0.00 0.00 0.00 1.63
436 437 2.103094 TGCCTGTTTAGCGAGCATATCT 59.897 45.455 0.00 0.00 0.00 1.98
437 438 3.320826 TGCCTGTTTAGCGAGCATATCTA 59.679 43.478 0.00 0.00 0.00 1.98
438 439 4.202212 TGCCTGTTTAGCGAGCATATCTAA 60.202 41.667 0.00 0.00 0.00 2.10
439 440 4.387256 GCCTGTTTAGCGAGCATATCTAAG 59.613 45.833 0.00 0.00 0.00 2.18
440 441 5.533482 CCTGTTTAGCGAGCATATCTAAGT 58.467 41.667 0.00 0.00 0.00 2.24
441 442 5.986135 CCTGTTTAGCGAGCATATCTAAGTT 59.014 40.000 0.00 0.00 0.00 2.66
442 443 6.074088 CCTGTTTAGCGAGCATATCTAAGTTG 60.074 42.308 0.00 0.00 0.00 3.16
443 444 5.753438 TGTTTAGCGAGCATATCTAAGTTGG 59.247 40.000 0.00 0.00 0.00 3.77
444 445 5.784578 TTAGCGAGCATATCTAAGTTGGA 57.215 39.130 0.00 0.00 0.00 3.53
445 446 4.881019 AGCGAGCATATCTAAGTTGGAT 57.119 40.909 6.95 6.95 0.00 3.41
446 447 4.564041 AGCGAGCATATCTAAGTTGGATG 58.436 43.478 11.70 0.00 0.00 3.51
447 448 4.281941 AGCGAGCATATCTAAGTTGGATGA 59.718 41.667 11.70 0.00 0.00 2.92
448 449 4.624882 GCGAGCATATCTAAGTTGGATGAG 59.375 45.833 11.70 5.40 0.00 2.90
449 450 4.624882 CGAGCATATCTAAGTTGGATGAGC 59.375 45.833 11.70 13.81 0.00 4.26
450 451 4.564041 AGCATATCTAAGTTGGATGAGCG 58.436 43.478 11.70 0.00 33.10 5.03
451 452 4.039730 AGCATATCTAAGTTGGATGAGCGT 59.960 41.667 11.70 3.88 33.10 5.07
452 453 5.243954 AGCATATCTAAGTTGGATGAGCGTA 59.756 40.000 11.70 0.00 33.10 4.42
453 454 5.574830 GCATATCTAAGTTGGATGAGCGTAG 59.425 44.000 11.70 0.00 0.00 3.51
454 455 6.570571 GCATATCTAAGTTGGATGAGCGTAGA 60.571 42.308 11.70 0.00 0.00 2.59
455 456 7.542890 CATATCTAAGTTGGATGAGCGTAGAT 58.457 38.462 11.70 0.00 37.56 1.98
456 457 5.440234 TCTAAGTTGGATGAGCGTAGATC 57.560 43.478 0.00 0.00 46.88 2.75
457 458 3.460857 AAGTTGGATGAGCGTAGATCC 57.539 47.619 0.00 0.00 45.64 3.36
458 459 1.689273 AGTTGGATGAGCGTAGATCCC 59.311 52.381 0.00 0.00 45.64 3.85
459 460 0.673985 TTGGATGAGCGTAGATCCCG 59.326 55.000 0.00 0.00 45.64 5.14
460 461 1.179174 TGGATGAGCGTAGATCCCGG 61.179 60.000 0.00 0.00 45.64 5.73
461 462 0.894184 GGATGAGCGTAGATCCCGGA 60.894 60.000 0.73 0.00 45.64 5.14
462 463 0.959553 GATGAGCGTAGATCCCGGAA 59.040 55.000 0.73 0.00 45.64 4.30
463 464 1.340248 GATGAGCGTAGATCCCGGAAA 59.660 52.381 0.73 0.00 45.64 3.13
464 465 0.458669 TGAGCGTAGATCCCGGAAAC 59.541 55.000 0.73 0.00 45.64 2.78
465 466 0.249363 GAGCGTAGATCCCGGAAACC 60.249 60.000 0.73 0.00 36.66 3.27
508 509 2.979814 AACAAAGTTTCCACCAAGCC 57.020 45.000 0.00 0.00 0.00 4.35
511 512 1.069049 CAAAGTTTCCACCAAGCCCAG 59.931 52.381 0.00 0.00 0.00 4.45
533 537 3.380637 GCAATGCATCTTCTCTTCACCAT 59.619 43.478 0.00 0.00 0.00 3.55
541 545 3.198635 TCTTCTCTTCACCATCATCACCC 59.801 47.826 0.00 0.00 0.00 4.61
550 554 1.216175 CCATCATCACCCCACCAGAAT 59.784 52.381 0.00 0.00 0.00 2.40
554 558 1.005805 CATCACCCCACCAGAATCCAA 59.994 52.381 0.00 0.00 0.00 3.53
565 569 5.106157 CCACCAGAATCCAACAATAGTGTTC 60.106 44.000 5.41 0.00 45.00 3.18
569 573 8.055181 ACCAGAATCCAACAATAGTGTTCATAT 58.945 33.333 5.41 0.00 45.00 1.78
570 574 9.559732 CCAGAATCCAACAATAGTGTTCATATA 57.440 33.333 5.41 0.00 45.00 0.86
612 617 3.864583 GCAACTTGAAAACTGACATTGCA 59.135 39.130 0.00 0.00 40.63 4.08
614 619 5.691305 GCAACTTGAAAACTGACATTGCATA 59.309 36.000 0.00 0.00 40.63 3.14
617 622 8.602328 CAACTTGAAAACTGACATTGCATAAAA 58.398 29.630 0.00 0.00 0.00 1.52
659 664 7.896811 ACAACTTTGATAAGGATTTCTTTCCC 58.103 34.615 0.00 0.00 36.35 3.97
666 671 4.485653 AAGGATTTCTTTCCCTCCCAAA 57.514 40.909 0.00 0.00 36.35 3.28
671 676 4.806952 TTTCTTTCCCTCCCAAAGAGAA 57.193 40.909 0.00 0.00 46.50 2.87
680 685 4.202151 CCCTCCCAAAGAGAAGTGTTTTTG 60.202 45.833 0.00 0.00 46.50 2.44
684 689 6.394809 TCCCAAAGAGAAGTGTTTTTGTTTC 58.605 36.000 0.00 0.00 0.00 2.78
685 690 5.580691 CCCAAAGAGAAGTGTTTTTGTTTCC 59.419 40.000 0.00 0.00 0.00 3.13
688 693 7.334171 CCAAAGAGAAGTGTTTTTGTTTCCATT 59.666 33.333 0.00 0.00 0.00 3.16
709 714 8.960591 TCCATTCACCAATTCTTTCTCTAATTC 58.039 33.333 0.00 0.00 0.00 2.17
764 769 1.856265 GCACCGACCAAAGCAGGAAG 61.856 60.000 0.00 0.00 0.00 3.46
773 778 3.181423 ACCAAAGCAGGAAGACCCAAATA 60.181 43.478 0.00 0.00 37.41 1.40
775 780 4.467438 CCAAAGCAGGAAGACCCAAATATT 59.533 41.667 0.00 0.00 37.41 1.28
778 783 7.147672 CCAAAGCAGGAAGACCCAAATATTTAT 60.148 37.037 0.00 0.00 37.41 1.40
779 784 7.588497 AAGCAGGAAGACCCAAATATTTATC 57.412 36.000 0.00 0.00 37.41 1.75
781 786 6.774656 AGCAGGAAGACCCAAATATTTATCAG 59.225 38.462 0.00 0.00 37.41 2.90
875 2518 4.481930 TGCAGTTAACAACAGCATACAC 57.518 40.909 8.61 0.00 46.88 2.90
876 2519 3.059257 TGCAGTTAACAACAGCATACACG 60.059 43.478 8.61 0.00 46.88 4.49
877 2520 3.479006 CAGTTAACAACAGCATACACGC 58.521 45.455 8.61 0.00 0.00 5.34
878 2521 3.186409 CAGTTAACAACAGCATACACGCT 59.814 43.478 8.61 0.00 45.21 5.07
879 2522 3.432252 AGTTAACAACAGCATACACGCTC 59.568 43.478 8.61 0.00 41.38 5.03
880 2523 1.156736 AACAACAGCATACACGCTCC 58.843 50.000 0.00 0.00 41.38 4.70
881 2524 0.673644 ACAACAGCATACACGCTCCC 60.674 55.000 0.00 0.00 41.38 4.30
882 2525 0.391661 CAACAGCATACACGCTCCCT 60.392 55.000 0.00 0.00 41.38 4.20
883 2526 1.134818 CAACAGCATACACGCTCCCTA 60.135 52.381 0.00 0.00 41.38 3.53
884 2527 1.191535 ACAGCATACACGCTCCCTAA 58.808 50.000 0.00 0.00 41.38 2.69
885 2528 1.553248 ACAGCATACACGCTCCCTAAA 59.447 47.619 0.00 0.00 41.38 1.85
886 2529 2.027561 ACAGCATACACGCTCCCTAAAA 60.028 45.455 0.00 0.00 41.38 1.52
887 2530 3.006940 CAGCATACACGCTCCCTAAAAA 58.993 45.455 0.00 0.00 41.38 1.94
1467 3158 2.506438 GTCGACTTCTTCCGCCCG 60.506 66.667 8.70 0.00 0.00 6.13
2086 3777 0.165944 CGCGGACAAGTGAATCCAAC 59.834 55.000 0.00 0.00 34.35 3.77
2106 3797 2.223641 ACTGTTCTTCGCAGTTCGTACA 60.224 45.455 0.00 0.00 43.87 2.90
2107 3798 2.987149 CTGTTCTTCGCAGTTCGTACAT 59.013 45.455 0.00 0.00 39.67 2.29
2112 3803 4.163552 TCTTCGCAGTTCGTACATTGTAG 58.836 43.478 0.00 0.00 39.67 2.74
2114 3805 2.488937 TCGCAGTTCGTACATTGTAGGA 59.511 45.455 13.69 13.69 39.67 2.94
2117 3808 4.328983 CGCAGTTCGTACATTGTAGGAATT 59.671 41.667 26.00 21.39 0.00 2.17
2118 3809 5.500290 CGCAGTTCGTACATTGTAGGAATTC 60.500 44.000 26.00 17.71 0.00 2.17
2119 3810 5.220605 GCAGTTCGTACATTGTAGGAATTCC 60.221 44.000 26.00 17.31 0.00 3.01
2134 3825 6.936968 AGGAATTCCTACTTTGTACTCTGT 57.063 37.500 25.99 0.00 46.48 3.41
2149 3846 6.409704 TGTACTCTGTAGTATGTAGTCCGTT 58.590 40.000 0.00 0.00 40.30 4.44
2152 3849 5.942236 ACTCTGTAGTATGTAGTCCGTTCAA 59.058 40.000 0.00 0.00 32.84 2.69
2158 3855 6.579666 AGTATGTAGTCCGTTCAAGTTACA 57.420 37.500 0.00 0.00 0.00 2.41
2164 3861 6.809689 TGTAGTCCGTTCAAGTTACACATATG 59.190 38.462 0.00 0.00 0.00 1.78
2184 3881 7.606073 ACATATGTAATGGCATACGCTAATTCA 59.394 33.333 6.56 0.00 38.60 2.57
2185 3882 5.922739 TGTAATGGCATACGCTAATTCAG 57.077 39.130 0.00 0.00 38.60 3.02
2186 3883 5.364778 TGTAATGGCATACGCTAATTCAGT 58.635 37.500 0.00 0.00 38.60 3.41
2187 3884 6.517605 TGTAATGGCATACGCTAATTCAGTA 58.482 36.000 0.00 0.00 38.60 2.74
2188 3885 6.987404 TGTAATGGCATACGCTAATTCAGTAA 59.013 34.615 0.00 0.00 38.60 2.24
2189 3886 7.659799 TGTAATGGCATACGCTAATTCAGTAAT 59.340 33.333 0.00 0.00 38.60 1.89
2190 3887 7.510549 AATGGCATACGCTAATTCAGTAATT 57.489 32.000 0.00 0.00 38.60 1.40
2191 3888 6.539649 TGGCATACGCTAATTCAGTAATTC 57.460 37.500 0.00 0.00 38.60 2.17
2222 4016 7.035612 TGTAGTAGAATATGATTATGCGCCAG 58.964 38.462 4.18 0.00 0.00 4.85
2232 4026 1.334384 TATGCGCCAGCCTTACCTGA 61.334 55.000 4.18 0.00 44.33 3.86
2237 4031 1.401905 CGCCAGCCTTACCTGAATTTC 59.598 52.381 0.00 0.00 34.77 2.17
2251 4045 4.522022 CCTGAATTTCTCTTTGCCTGACTT 59.478 41.667 0.00 0.00 0.00 3.01
2252 4046 5.443185 TGAATTTCTCTTTGCCTGACTTG 57.557 39.130 0.00 0.00 0.00 3.16
2271 4065 4.867608 ACTTGGTGTGTTTGTGCAAATTAC 59.132 37.500 0.46 4.81 32.36 1.89
2281 4075 2.224426 TGTGCAAATTACCAGACGAGGT 60.224 45.455 0.00 0.00 45.72 3.85
2337 4132 6.017933 GTGCGTTCTCATTTGTTCTTCATAG 58.982 40.000 0.00 0.00 0.00 2.23
2371 4166 9.474920 TTTTGCGAAATTGTTCTTCATAGATTT 57.525 25.926 0.00 0.00 0.00 2.17
2450 4253 4.202212 ACTTCCAAGAAAAATTCAACCCCG 60.202 41.667 0.00 0.00 0.00 5.73
2546 4349 2.416747 GATATATTCCTGTGCGCTGCA 58.583 47.619 9.73 7.03 35.60 4.41
2557 4360 2.317609 GCGCTGCAACGAGAGGAAA 61.318 57.895 14.76 0.00 34.06 3.13
2592 4689 5.063880 ACATCCTACTTGCGAAAGAAAACT 58.936 37.500 11.02 0.00 0.00 2.66
2594 4691 6.147328 ACATCCTACTTGCGAAAGAAAACTAC 59.853 38.462 11.02 0.00 0.00 2.73
2603 4700 6.527957 TGCGAAAGAAAACTACGTAAATAGC 58.472 36.000 0.00 0.00 0.00 2.97
2686 6116 6.843069 AAGTGAAAATTCGGATTTTTGGTG 57.157 33.333 15.49 0.00 43.61 4.17
2687 6117 4.749598 AGTGAAAATTCGGATTTTTGGTGC 59.250 37.500 15.49 3.55 43.61 5.01
2692 6122 6.907206 AAATTCGGATTTTTGGTGCATATG 57.093 33.333 0.00 0.00 31.48 1.78
2693 6123 5.596836 ATTCGGATTTTTGGTGCATATGT 57.403 34.783 4.29 0.00 0.00 2.29
2697 6127 5.825151 TCGGATTTTTGGTGCATATGTATGA 59.175 36.000 4.29 0.00 35.75 2.15
2698 6128 6.017192 TCGGATTTTTGGTGCATATGTATGAG 60.017 38.462 4.29 0.00 35.75 2.90
2699 6129 6.449698 GGATTTTTGGTGCATATGTATGAGG 58.550 40.000 4.29 0.00 35.75 3.86
2700 6130 5.850557 TTTTTGGTGCATATGTATGAGGG 57.149 39.130 4.29 0.00 35.75 4.30
2701 6131 4.518278 TTTGGTGCATATGTATGAGGGT 57.482 40.909 4.29 0.00 35.75 4.34
2702 6132 5.638530 TTTGGTGCATATGTATGAGGGTA 57.361 39.130 4.29 0.00 35.75 3.69
2703 6133 5.841267 TTGGTGCATATGTATGAGGGTAT 57.159 39.130 4.29 0.00 35.75 2.73
2704 6134 5.164620 TGGTGCATATGTATGAGGGTATG 57.835 43.478 4.29 0.00 35.75 2.39
2705 6135 4.843516 TGGTGCATATGTATGAGGGTATGA 59.156 41.667 4.29 0.00 35.75 2.15
2706 6136 5.488561 TGGTGCATATGTATGAGGGTATGAT 59.511 40.000 4.29 0.00 35.75 2.45
2723 6493 7.004691 GGGTATGATTATCCTTTAAGCCAAGT 58.995 38.462 0.00 0.00 0.00 3.16
2724 6494 8.161425 GGGTATGATTATCCTTTAAGCCAAGTA 58.839 37.037 0.00 0.00 0.00 2.24
2725 6495 9.220767 GGTATGATTATCCTTTAAGCCAAGTAG 57.779 37.037 0.00 0.00 0.00 2.57
2726 6496 9.780186 GTATGATTATCCTTTAAGCCAAGTAGT 57.220 33.333 0.00 0.00 0.00 2.73
2733 6503 4.461198 CTTTAAGCCAAGTAGTATGGGGG 58.539 47.826 0.00 0.00 38.44 5.40
2736 6506 0.106149 GCCAAGTAGTATGGGGGACG 59.894 60.000 0.00 0.00 38.44 4.79
2816 6586 2.925578 TGAATTCAGATTTGCCTGCG 57.074 45.000 3.38 0.00 34.28 5.18
2817 6587 2.435422 TGAATTCAGATTTGCCTGCGA 58.565 42.857 3.38 0.00 34.28 5.10
2827 6597 9.836864 TTCAGATTTGCCTGCGATATATTATAT 57.163 29.630 0.00 0.00 34.28 0.86
2834 6604 8.538409 TGCCTGCGATATATTATATAGCAATG 57.462 34.615 23.23 19.24 35.68 2.82
2905 6675 0.814010 AAGCGTGAACCTGTGTCCAC 60.814 55.000 0.00 0.00 0.00 4.02
2907 6677 0.032952 GCGTGAACCTGTGTCCACTA 59.967 55.000 0.00 0.00 0.00 2.74
2916 6686 5.562298 ACCTGTGTCCACTAAAGTGTTAT 57.438 39.130 9.17 0.00 44.21 1.89
2917 6687 5.305585 ACCTGTGTCCACTAAAGTGTTATG 58.694 41.667 9.17 0.00 44.21 1.90
2918 6688 5.071250 ACCTGTGTCCACTAAAGTGTTATGA 59.929 40.000 9.17 0.00 44.21 2.15
2952 6722 4.299796 TTGCCAAGGCCACCTCCC 62.300 66.667 5.01 0.00 41.09 4.30
2965 6735 2.930019 CTCCCAGGGTGTGCTCCA 60.930 66.667 5.01 0.00 0.00 3.86
2966 6736 3.249189 TCCCAGGGTGTGCTCCAC 61.249 66.667 5.01 0.00 43.74 4.02
2972 6742 1.294780 GGGTGTGCTCCACTCTCTG 59.705 63.158 6.97 0.00 41.68 3.35
3011 6781 2.171003 GGCTTCCTTGTATGCCAAAGT 58.829 47.619 0.00 0.00 44.34 2.66
3012 6782 2.094545 GGCTTCCTTGTATGCCAAAGTG 60.095 50.000 0.00 0.00 44.34 3.16
3013 6783 2.819608 GCTTCCTTGTATGCCAAAGTGA 59.180 45.455 0.00 0.00 31.20 3.41
3014 6784 3.255642 GCTTCCTTGTATGCCAAAGTGAA 59.744 43.478 0.00 0.00 31.20 3.18
3015 6785 4.616835 GCTTCCTTGTATGCCAAAGTGAAG 60.617 45.833 0.00 0.00 36.87 3.02
3016 6786 3.420893 TCCTTGTATGCCAAAGTGAAGG 58.579 45.455 0.00 0.00 31.20 3.46
3017 6787 3.073798 TCCTTGTATGCCAAAGTGAAGGA 59.926 43.478 0.00 0.00 36.10 3.36
3018 6788 3.826157 CCTTGTATGCCAAAGTGAAGGAA 59.174 43.478 0.00 0.00 31.85 3.36
3019 6789 4.280677 CCTTGTATGCCAAAGTGAAGGAAA 59.719 41.667 0.00 0.00 31.85 3.13
3020 6790 5.047092 CCTTGTATGCCAAAGTGAAGGAAAT 60.047 40.000 0.00 0.00 31.85 2.17
3021 6791 6.152661 CCTTGTATGCCAAAGTGAAGGAAATA 59.847 38.462 0.00 0.00 31.85 1.40
3022 6792 7.147846 CCTTGTATGCCAAAGTGAAGGAAATAT 60.148 37.037 0.00 0.00 31.85 1.28
3023 6793 8.815565 TTGTATGCCAAAGTGAAGGAAATATA 57.184 30.769 0.00 0.00 0.00 0.86
3024 6794 8.220755 TGTATGCCAAAGTGAAGGAAATATAC 57.779 34.615 0.00 0.00 0.00 1.47
3025 6795 6.715347 ATGCCAAAGTGAAGGAAATATACC 57.285 37.500 0.00 0.00 0.00 2.73
3026 6796 4.953579 TGCCAAAGTGAAGGAAATATACCC 59.046 41.667 0.00 0.00 0.00 3.69
3027 6797 5.201243 GCCAAAGTGAAGGAAATATACCCT 58.799 41.667 0.00 0.00 0.00 4.34
3028 6798 6.069323 TGCCAAAGTGAAGGAAATATACCCTA 60.069 38.462 0.00 0.00 31.36 3.53
3029 6799 6.831868 GCCAAAGTGAAGGAAATATACCCTAA 59.168 38.462 0.00 0.00 31.36 2.69
3030 6800 7.340999 GCCAAAGTGAAGGAAATATACCCTAAA 59.659 37.037 0.00 0.00 31.36 1.85
3031 6801 8.903820 CCAAAGTGAAGGAAATATACCCTAAAG 58.096 37.037 0.00 0.00 31.36 1.85
3032 6802 8.903820 CAAAGTGAAGGAAATATACCCTAAAGG 58.096 37.037 0.00 0.00 43.78 3.11
3033 6803 6.602278 AGTGAAGGAAATATACCCTAAAGGC 58.398 40.000 0.00 0.00 40.58 4.35
3034 6804 6.159751 AGTGAAGGAAATATACCCTAAAGGCA 59.840 38.462 0.00 0.00 40.58 4.75
3035 6805 6.831868 GTGAAGGAAATATACCCTAAAGGCAA 59.168 38.462 0.00 0.00 40.58 4.52
3036 6806 7.505923 GTGAAGGAAATATACCCTAAAGGCAAT 59.494 37.037 0.00 0.00 40.58 3.56
3037 6807 8.729047 TGAAGGAAATATACCCTAAAGGCAATA 58.271 33.333 0.00 0.00 40.58 1.90
3038 6808 9.582648 GAAGGAAATATACCCTAAAGGCAATAA 57.417 33.333 0.00 0.00 40.58 1.40
3047 6817 9.709387 ATACCCTAAAGGCAATAATAAAGTTGT 57.291 29.630 0.00 0.00 40.58 3.32
3048 6818 8.430573 ACCCTAAAGGCAATAATAAAGTTGTT 57.569 30.769 0.00 0.00 40.58 2.83
3049 6819 9.536510 ACCCTAAAGGCAATAATAAAGTTGTTA 57.463 29.630 0.00 0.00 40.58 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.058450 TGGCATTTCGAAAGCACATTTG 58.942 40.909 23.99 14.65 0.00 2.32
2 3 3.598019 ATGGCATTTCGAAAGCACATT 57.402 38.095 23.99 4.56 0.00 2.71
4 5 2.674954 CAATGGCATTTCGAAAGCACA 58.325 42.857 23.99 20.22 0.00 4.57
5 6 1.391144 GCAATGGCATTTCGAAAGCAC 59.609 47.619 23.99 17.01 40.72 4.40
6 7 1.712401 GCAATGGCATTTCGAAAGCA 58.288 45.000 23.99 15.18 40.72 3.91
7 8 0.641783 CGCAATGGCATTTCGAAAGC 59.358 50.000 24.50 15.59 41.24 3.51
8 9 1.270971 CCGCAATGGCATTTCGAAAG 58.729 50.000 29.03 12.17 41.24 2.62
9 10 0.108898 CCCGCAATGGCATTTCGAAA 60.109 50.000 29.03 13.91 41.24 3.46
10 11 1.247419 ACCCGCAATGGCATTTCGAA 61.247 50.000 29.03 0.00 41.24 3.71
11 12 0.393132 TACCCGCAATGGCATTTCGA 60.393 50.000 29.03 10.43 41.24 3.71
12 13 0.453793 TTACCCGCAATGGCATTTCG 59.546 50.000 22.42 22.42 41.24 3.46
13 14 2.663826 TTTACCCGCAATGGCATTTC 57.336 45.000 10.65 4.67 41.24 2.17
14 15 3.269178 CATTTTACCCGCAATGGCATTT 58.731 40.909 10.65 0.00 41.24 2.32
15 16 2.903798 CATTTTACCCGCAATGGCATT 58.096 42.857 6.96 6.96 41.24 3.56
16 17 1.473080 GCATTTTACCCGCAATGGCAT 60.473 47.619 0.00 0.00 41.24 4.40
17 18 0.108424 GCATTTTACCCGCAATGGCA 60.108 50.000 0.00 0.00 41.24 4.92
18 19 0.809636 GGCATTTTACCCGCAATGGC 60.810 55.000 3.52 3.52 45.39 4.40
19 20 0.534412 TGGCATTTTACCCGCAATGG 59.466 50.000 0.00 0.00 31.97 3.16
20 21 1.639280 GTGGCATTTTACCCGCAATG 58.361 50.000 0.00 0.00 34.09 2.82
21 22 0.172352 CGTGGCATTTTACCCGCAAT 59.828 50.000 0.00 0.00 0.00 3.56
22 23 1.581954 CGTGGCATTTTACCCGCAA 59.418 52.632 0.00 0.00 0.00 4.85
23 24 2.983930 GCGTGGCATTTTACCCGCA 61.984 57.895 10.89 0.00 42.62 5.69
24 25 1.370587 TAGCGTGGCATTTTACCCGC 61.371 55.000 8.14 8.14 43.08 6.13
25 26 1.002900 CATAGCGTGGCATTTTACCCG 60.003 52.381 0.00 0.00 0.00 5.28
26 27 2.294074 TCATAGCGTGGCATTTTACCC 58.706 47.619 0.00 0.00 0.00 3.69
27 28 3.377172 ACTTCATAGCGTGGCATTTTACC 59.623 43.478 0.00 0.00 0.00 2.85
28 29 4.094294 TGACTTCATAGCGTGGCATTTTAC 59.906 41.667 0.00 0.00 0.00 2.01
29 30 4.257731 TGACTTCATAGCGTGGCATTTTA 58.742 39.130 0.00 0.00 0.00 1.52
30 31 3.081061 TGACTTCATAGCGTGGCATTTT 58.919 40.909 0.00 0.00 0.00 1.82
31 32 2.710377 TGACTTCATAGCGTGGCATTT 58.290 42.857 0.00 0.00 0.00 2.32
32 33 2.401583 TGACTTCATAGCGTGGCATT 57.598 45.000 0.00 0.00 0.00 3.56
33 34 2.158914 TGATGACTTCATAGCGTGGCAT 60.159 45.455 0.00 0.00 36.57 4.40
34 35 1.206849 TGATGACTTCATAGCGTGGCA 59.793 47.619 0.00 0.00 36.57 4.92
35 36 1.939974 TGATGACTTCATAGCGTGGC 58.060 50.000 0.00 0.00 36.57 5.01
36 37 3.242091 CGTTTGATGACTTCATAGCGTGG 60.242 47.826 0.00 0.00 36.57 4.94
37 38 3.782250 GCGTTTGATGACTTCATAGCGTG 60.782 47.826 0.00 0.00 36.57 5.34
38 39 2.348666 GCGTTTGATGACTTCATAGCGT 59.651 45.455 0.00 0.00 36.57 5.07
39 40 2.285834 GGCGTTTGATGACTTCATAGCG 60.286 50.000 0.00 0.00 36.57 4.26
40 41 2.677836 TGGCGTTTGATGACTTCATAGC 59.322 45.455 0.00 0.00 36.57 2.97
41 42 4.333649 ACATGGCGTTTGATGACTTCATAG 59.666 41.667 0.00 0.00 36.57 2.23
42 43 4.260985 ACATGGCGTTTGATGACTTCATA 58.739 39.130 0.00 0.00 36.57 2.15
43 44 3.084039 ACATGGCGTTTGATGACTTCAT 58.916 40.909 0.00 0.00 39.70 2.57
44 45 2.503331 ACATGGCGTTTGATGACTTCA 58.497 42.857 0.00 0.00 0.00 3.02
45 46 4.678509 TTACATGGCGTTTGATGACTTC 57.321 40.909 0.00 0.00 0.00 3.01
46 47 5.643379 AATTACATGGCGTTTGATGACTT 57.357 34.783 0.00 0.00 0.00 3.01
47 48 5.643379 AAATTACATGGCGTTTGATGACT 57.357 34.783 0.00 0.00 0.00 3.41
48 49 6.468956 CACTAAATTACATGGCGTTTGATGAC 59.531 38.462 0.00 0.00 0.00 3.06
49 50 6.404184 CCACTAAATTACATGGCGTTTGATGA 60.404 38.462 0.00 0.00 0.00 2.92
50 51 5.743398 CCACTAAATTACATGGCGTTTGATG 59.257 40.000 0.00 0.00 0.00 3.07
51 52 5.417580 ACCACTAAATTACATGGCGTTTGAT 59.582 36.000 0.00 0.00 35.49 2.57
52 53 4.762765 ACCACTAAATTACATGGCGTTTGA 59.237 37.500 0.00 0.00 35.49 2.69
53 54 5.054390 ACCACTAAATTACATGGCGTTTG 57.946 39.130 0.00 0.00 35.49 2.93
54 55 7.012610 GGTATACCACTAAATTACATGGCGTTT 59.987 37.037 17.44 0.00 35.49 3.60
55 56 6.484308 GGTATACCACTAAATTACATGGCGTT 59.516 38.462 17.44 0.00 35.49 4.84
56 57 5.993441 GGTATACCACTAAATTACATGGCGT 59.007 40.000 17.44 0.00 35.49 5.68
57 58 6.228258 AGGTATACCACTAAATTACATGGCG 58.772 40.000 23.87 0.00 38.89 5.69
58 59 8.591072 TCTAGGTATACCACTAAATTACATGGC 58.409 37.037 23.87 0.00 38.89 4.40
66 67 8.804204 CGGAGAATTCTAGGTATACCACTAAAT 58.196 37.037 23.87 13.67 38.89 1.40
67 68 7.232127 CCGGAGAATTCTAGGTATACCACTAAA 59.768 40.741 23.87 12.10 38.89 1.85
68 69 6.718454 CCGGAGAATTCTAGGTATACCACTAA 59.282 42.308 23.87 13.77 38.89 2.24
69 70 6.044754 TCCGGAGAATTCTAGGTATACCACTA 59.955 42.308 23.87 7.62 38.89 2.74
70 71 5.078256 CCGGAGAATTCTAGGTATACCACT 58.922 45.833 23.87 6.79 38.89 4.00
71 72 5.075493 TCCGGAGAATTCTAGGTATACCAC 58.925 45.833 23.87 6.10 38.89 4.16
72 73 5.322754 CTCCGGAGAATTCTAGGTATACCA 58.677 45.833 28.21 9.00 38.89 3.25
73 74 4.705991 CCTCCGGAGAATTCTAGGTATACC 59.294 50.000 33.39 14.54 0.00 2.73
74 75 5.568392 TCCTCCGGAGAATTCTAGGTATAC 58.432 45.833 33.39 0.00 0.00 1.47
75 76 5.855338 TCCTCCGGAGAATTCTAGGTATA 57.145 43.478 33.39 10.65 0.00 1.47
76 77 4.743705 TCCTCCGGAGAATTCTAGGTAT 57.256 45.455 33.39 0.00 0.00 2.73
89 90 0.631753 AGATCCTTGTCTCCTCCGGA 59.368 55.000 2.93 2.93 0.00 5.14
90 91 1.036707 GAGATCCTTGTCTCCTCCGG 58.963 60.000 0.00 0.00 38.94 5.14
91 92 0.665835 CGAGATCCTTGTCTCCTCCG 59.334 60.000 0.00 0.00 41.24 4.63
92 93 1.679153 GACGAGATCCTTGTCTCCTCC 59.321 57.143 7.01 0.00 40.63 4.30
93 94 1.679153 GGACGAGATCCTTGTCTCCTC 59.321 57.143 12.53 0.00 45.22 3.71
94 95 1.770294 GGACGAGATCCTTGTCTCCT 58.230 55.000 12.53 0.00 45.22 3.69
104 105 0.457851 CTGACCAGTGGGACGAGATC 59.542 60.000 15.21 0.00 38.05 2.75
105 106 0.251832 ACTGACCAGTGGGACGAGAT 60.252 55.000 15.21 0.00 40.75 2.75
106 107 1.153061 ACTGACCAGTGGGACGAGA 59.847 57.895 15.21 0.00 40.75 4.04
107 108 3.778955 ACTGACCAGTGGGACGAG 58.221 61.111 15.21 5.82 40.75 4.18
115 116 1.536662 GACCCCTCCACTGACCAGT 60.537 63.158 0.00 0.00 43.61 4.00
116 117 1.127567 TTGACCCCTCCACTGACCAG 61.128 60.000 0.00 0.00 0.00 4.00
117 118 0.475632 ATTGACCCCTCCACTGACCA 60.476 55.000 0.00 0.00 0.00 4.02
118 119 0.698818 AATTGACCCCTCCACTGACC 59.301 55.000 0.00 0.00 0.00 4.02
119 120 3.713826 TTAATTGACCCCTCCACTGAC 57.286 47.619 0.00 0.00 0.00 3.51
120 121 4.946160 AATTAATTGACCCCTCCACTGA 57.054 40.909 0.00 0.00 0.00 3.41
121 122 6.187682 AGTAAATTAATTGACCCCTCCACTG 58.812 40.000 11.50 0.00 0.00 3.66
122 123 6.402981 AGTAAATTAATTGACCCCTCCACT 57.597 37.500 11.50 0.00 0.00 4.00
123 124 7.067859 GGTTAGTAAATTAATTGACCCCTCCAC 59.932 40.741 11.50 1.54 0.00 4.02
124 125 7.036425 AGGTTAGTAAATTAATTGACCCCTCCA 60.036 37.037 11.50 0.00 0.00 3.86
125 126 7.351952 AGGTTAGTAAATTAATTGACCCCTCC 58.648 38.462 11.50 9.39 0.00 4.30
126 127 8.818622 AAGGTTAGTAAATTAATTGACCCCTC 57.181 34.615 11.50 1.57 0.00 4.30
145 146 9.933723 GTGGTCAAGTACTCTTATTTAAGGTTA 57.066 33.333 0.00 0.00 34.14 2.85
146 147 7.601508 CGTGGTCAAGTACTCTTATTTAAGGTT 59.398 37.037 0.00 0.00 34.14 3.50
147 148 7.095270 CGTGGTCAAGTACTCTTATTTAAGGT 58.905 38.462 0.00 0.00 34.14 3.50
148 149 6.035758 GCGTGGTCAAGTACTCTTATTTAAGG 59.964 42.308 0.00 0.00 34.14 2.69
149 150 6.812160 AGCGTGGTCAAGTACTCTTATTTAAG 59.188 38.462 0.00 0.00 32.07 1.85
150 151 6.588756 CAGCGTGGTCAAGTACTCTTATTTAA 59.411 38.462 0.00 0.00 32.07 1.52
151 152 6.097356 CAGCGTGGTCAAGTACTCTTATTTA 58.903 40.000 0.00 0.00 32.07 1.40
152 153 4.929808 CAGCGTGGTCAAGTACTCTTATTT 59.070 41.667 0.00 0.00 32.07 1.40
153 154 4.495422 CAGCGTGGTCAAGTACTCTTATT 58.505 43.478 0.00 0.00 32.07 1.40
154 155 3.119101 CCAGCGTGGTCAAGTACTCTTAT 60.119 47.826 0.00 0.00 31.35 1.73
155 156 2.230508 CCAGCGTGGTCAAGTACTCTTA 59.769 50.000 0.00 0.00 31.35 2.10
156 157 1.000955 CCAGCGTGGTCAAGTACTCTT 59.999 52.381 0.00 0.00 31.35 2.85
157 158 0.603569 CCAGCGTGGTCAAGTACTCT 59.396 55.000 0.00 0.00 31.35 3.24
158 159 0.389948 CCCAGCGTGGTCAAGTACTC 60.390 60.000 0.00 0.00 35.17 2.59
159 160 0.830444 TCCCAGCGTGGTCAAGTACT 60.830 55.000 0.00 0.00 35.17 2.73
160 161 0.249398 ATCCCAGCGTGGTCAAGTAC 59.751 55.000 3.82 0.00 35.17 2.73
161 162 1.855295 TATCCCAGCGTGGTCAAGTA 58.145 50.000 3.82 0.00 35.17 2.24
162 163 1.134401 CATATCCCAGCGTGGTCAAGT 60.134 52.381 3.82 0.00 35.17 3.16
163 164 1.138859 TCATATCCCAGCGTGGTCAAG 59.861 52.381 3.82 0.00 35.17 3.02
164 165 1.134521 GTCATATCCCAGCGTGGTCAA 60.135 52.381 3.82 0.00 35.17 3.18
165 166 0.464036 GTCATATCCCAGCGTGGTCA 59.536 55.000 3.82 0.00 35.17 4.02
166 167 0.249911 GGTCATATCCCAGCGTGGTC 60.250 60.000 3.82 0.00 35.17 4.02
167 168 0.691078 AGGTCATATCCCAGCGTGGT 60.691 55.000 3.82 0.00 35.17 4.16
168 169 0.469917 AAGGTCATATCCCAGCGTGG 59.530 55.000 0.00 0.00 37.25 4.94
169 170 1.541233 GGAAGGTCATATCCCAGCGTG 60.541 57.143 0.00 0.00 0.00 5.34
170 171 0.759346 GGAAGGTCATATCCCAGCGT 59.241 55.000 0.00 0.00 0.00 5.07
171 172 1.051812 AGGAAGGTCATATCCCAGCG 58.948 55.000 0.00 0.00 36.31 5.18
172 173 1.771255 ACAGGAAGGTCATATCCCAGC 59.229 52.381 0.00 0.00 36.31 4.85
173 174 4.040952 CCTAACAGGAAGGTCATATCCCAG 59.959 50.000 0.00 0.00 37.67 4.45
174 175 3.973973 CCTAACAGGAAGGTCATATCCCA 59.026 47.826 0.00 0.00 37.67 4.37
175 176 4.232091 TCCTAACAGGAAGGTCATATCCC 58.768 47.826 0.00 0.00 42.51 3.85
187 188 5.195146 TGGATTCCTAGTAGTCCTAACAGGA 59.805 44.000 3.95 0.00 43.43 3.86
188 189 5.455872 TGGATTCCTAGTAGTCCTAACAGG 58.544 45.833 3.95 0.00 36.46 4.00
189 190 6.015010 CCATGGATTCCTAGTAGTCCTAACAG 60.015 46.154 5.56 0.00 0.00 3.16
190 191 5.839063 CCATGGATTCCTAGTAGTCCTAACA 59.161 44.000 5.56 0.00 0.00 2.41
191 192 6.075984 TCCATGGATTCCTAGTAGTCCTAAC 58.924 44.000 11.44 0.00 0.00 2.34
192 193 6.289482 TCCATGGATTCCTAGTAGTCCTAA 57.711 41.667 11.44 0.00 0.00 2.69
193 194 5.942977 TCCATGGATTCCTAGTAGTCCTA 57.057 43.478 11.44 0.00 0.00 2.94
194 195 4.834406 TCCATGGATTCCTAGTAGTCCT 57.166 45.455 11.44 0.00 0.00 3.85
195 196 4.158764 CGATCCATGGATTCCTAGTAGTCC 59.841 50.000 27.93 9.79 34.60 3.85
196 197 5.010933 TCGATCCATGGATTCCTAGTAGTC 58.989 45.833 27.93 11.25 34.60 2.59
197 198 4.999310 TCGATCCATGGATTCCTAGTAGT 58.001 43.478 27.93 2.42 34.60 2.73
198 199 5.068460 GGATCGATCCATGGATTCCTAGTAG 59.932 48.000 34.65 11.92 46.38 2.57
199 200 4.956700 GGATCGATCCATGGATTCCTAGTA 59.043 45.833 34.65 9.35 46.38 1.82
200 201 3.772025 GGATCGATCCATGGATTCCTAGT 59.228 47.826 34.65 11.41 46.38 2.57
201 202 4.399004 GGATCGATCCATGGATTCCTAG 57.601 50.000 34.65 16.26 46.38 3.02
214 215 9.956720 AACAAAATCTCAATATTTGGATCGATC 57.043 29.630 17.36 17.36 38.14 3.69
215 216 9.956720 GAACAAAATCTCAATATTTGGATCGAT 57.043 29.630 0.00 0.00 38.14 3.59
216 217 8.955388 TGAACAAAATCTCAATATTTGGATCGA 58.045 29.630 0.00 0.00 38.14 3.59
217 218 9.740239 ATGAACAAAATCTCAATATTTGGATCG 57.260 29.630 0.00 0.00 38.14 3.69
228 229 9.554724 GCGTATTAAAGATGAACAAAATCTCAA 57.445 29.630 0.00 0.00 33.17 3.02
229 230 8.946085 AGCGTATTAAAGATGAACAAAATCTCA 58.054 29.630 0.00 0.00 33.17 3.27
253 254 7.678947 ACATTACAGAAAGGATGCATATAGC 57.321 36.000 0.00 0.00 45.96 2.97
254 255 9.888878 CAAACATTACAGAAAGGATGCATATAG 57.111 33.333 0.00 0.00 0.00 1.31
255 256 8.849168 CCAAACATTACAGAAAGGATGCATATA 58.151 33.333 0.00 0.00 0.00 0.86
256 257 7.560991 TCCAAACATTACAGAAAGGATGCATAT 59.439 33.333 0.00 0.00 0.00 1.78
257 258 6.889177 TCCAAACATTACAGAAAGGATGCATA 59.111 34.615 0.00 0.00 0.00 3.14
258 259 5.716228 TCCAAACATTACAGAAAGGATGCAT 59.284 36.000 0.00 0.00 0.00 3.96
259 260 5.076182 TCCAAACATTACAGAAAGGATGCA 58.924 37.500 0.00 0.00 0.00 3.96
260 261 5.643379 TCCAAACATTACAGAAAGGATGC 57.357 39.130 0.00 0.00 0.00 3.91
261 262 6.604795 AGGATCCAAACATTACAGAAAGGATG 59.395 38.462 15.82 0.00 34.95 3.51
262 263 6.735556 AGGATCCAAACATTACAGAAAGGAT 58.264 36.000 15.82 0.00 37.34 3.24
263 264 6.139679 AGGATCCAAACATTACAGAAAGGA 57.860 37.500 15.82 0.00 0.00 3.36
264 265 6.624423 CAAGGATCCAAACATTACAGAAAGG 58.376 40.000 15.82 0.00 0.00 3.11
265 266 6.095377 GCAAGGATCCAAACATTACAGAAAG 58.905 40.000 15.82 0.00 0.00 2.62
266 267 5.047377 GGCAAGGATCCAAACATTACAGAAA 60.047 40.000 15.82 0.00 0.00 2.52
267 268 4.462483 GGCAAGGATCCAAACATTACAGAA 59.538 41.667 15.82 0.00 0.00 3.02
268 269 4.016444 GGCAAGGATCCAAACATTACAGA 58.984 43.478 15.82 0.00 0.00 3.41
269 270 3.131046 GGGCAAGGATCCAAACATTACAG 59.869 47.826 15.82 0.00 0.00 2.74
270 271 3.096092 GGGCAAGGATCCAAACATTACA 58.904 45.455 15.82 0.00 0.00 2.41
271 272 3.096092 TGGGCAAGGATCCAAACATTAC 58.904 45.455 15.82 0.00 0.00 1.89
272 273 3.464720 TGGGCAAGGATCCAAACATTA 57.535 42.857 15.82 0.00 0.00 1.90
273 274 2.323999 TGGGCAAGGATCCAAACATT 57.676 45.000 15.82 0.00 0.00 2.71
274 275 2.555732 ATGGGCAAGGATCCAAACAT 57.444 45.000 15.82 7.96 36.54 2.71
275 276 2.358090 CCTATGGGCAAGGATCCAAACA 60.358 50.000 15.82 5.82 36.08 2.83
276 277 2.310538 CCTATGGGCAAGGATCCAAAC 58.689 52.381 15.82 1.60 36.08 2.93
277 278 2.754012 CCTATGGGCAAGGATCCAAA 57.246 50.000 15.82 0.00 36.08 3.28
296 297 5.045872 GGATCTTCATTTACATGGCAAAGC 58.954 41.667 0.00 0.00 0.00 3.51
297 298 6.211587 TGGATCTTCATTTACATGGCAAAG 57.788 37.500 0.00 0.00 0.00 2.77
298 299 6.608405 AGATGGATCTTCATTTACATGGCAAA 59.392 34.615 0.00 0.00 31.97 3.68
299 300 6.131264 AGATGGATCTTCATTTACATGGCAA 58.869 36.000 0.00 0.00 31.97 4.52
300 301 5.698104 AGATGGATCTTCATTTACATGGCA 58.302 37.500 0.00 0.00 31.97 4.92
301 302 6.645790 AAGATGGATCTTCATTTACATGGC 57.354 37.500 0.00 0.00 43.27 4.40
302 303 8.867112 CAAAAGATGGATCTTCATTTACATGG 57.133 34.615 2.36 0.00 45.83 3.66
319 320 0.527565 CAAGGCGGGTCCAAAAGATG 59.472 55.000 0.00 0.00 37.29 2.90
320 321 0.404040 TCAAGGCGGGTCCAAAAGAT 59.596 50.000 0.00 0.00 37.29 2.40
321 322 0.250727 CTCAAGGCGGGTCCAAAAGA 60.251 55.000 0.00 0.00 37.29 2.52
322 323 1.244019 CCTCAAGGCGGGTCCAAAAG 61.244 60.000 0.00 0.00 37.29 2.27
323 324 1.228429 CCTCAAGGCGGGTCCAAAA 60.228 57.895 0.00 0.00 37.29 2.44
324 325 2.150719 TCCTCAAGGCGGGTCCAAA 61.151 57.895 0.00 0.00 37.29 3.28
325 326 2.528127 TCCTCAAGGCGGGTCCAA 60.528 61.111 0.00 0.00 37.29 3.53
326 327 3.319198 GTCCTCAAGGCGGGTCCA 61.319 66.667 0.00 0.00 37.29 4.02
327 328 2.198304 AATGTCCTCAAGGCGGGTCC 62.198 60.000 0.00 0.00 34.44 4.46
328 329 0.539986 TAATGTCCTCAAGGCGGGTC 59.460 55.000 0.00 0.00 34.44 4.46
329 330 0.252197 GTAATGTCCTCAAGGCGGGT 59.748 55.000 0.00 0.00 34.44 5.28
330 331 0.541863 AGTAATGTCCTCAAGGCGGG 59.458 55.000 0.00 0.00 34.44 6.13
331 332 1.066143 ACAGTAATGTCCTCAAGGCGG 60.066 52.381 0.00 0.00 34.44 6.13
332 333 2.093973 AGACAGTAATGTCCTCAAGGCG 60.094 50.000 19.08 0.00 39.50 5.52
333 334 3.618690 AGACAGTAATGTCCTCAAGGC 57.381 47.619 19.08 0.00 39.50 4.35
334 335 6.723298 ATCTAGACAGTAATGTCCTCAAGG 57.277 41.667 19.08 4.51 39.50 3.61
346 347 9.830975 TGCAAGCAAAATATTATCTAGACAGTA 57.169 29.630 0.00 0.00 0.00 2.74
347 348 8.737168 TGCAAGCAAAATATTATCTAGACAGT 57.263 30.769 0.00 0.00 0.00 3.55
348 349 9.049523 TCTGCAAGCAAAATATTATCTAGACAG 57.950 33.333 0.00 0.00 0.00 3.51
349 350 8.962884 TCTGCAAGCAAAATATTATCTAGACA 57.037 30.769 0.00 0.00 0.00 3.41
350 351 9.657121 GTTCTGCAAGCAAAATATTATCTAGAC 57.343 33.333 0.00 0.00 0.00 2.59
351 352 8.840321 GGTTCTGCAAGCAAAATATTATCTAGA 58.160 33.333 0.00 0.00 0.00 2.43
352 353 7.800380 CGGTTCTGCAAGCAAAATATTATCTAG 59.200 37.037 0.00 0.00 0.00 2.43
353 354 7.255104 CCGGTTCTGCAAGCAAAATATTATCTA 60.255 37.037 0.00 0.00 0.00 1.98
354 355 6.460123 CCGGTTCTGCAAGCAAAATATTATCT 60.460 38.462 0.00 0.00 0.00 1.98
355 356 5.687285 CCGGTTCTGCAAGCAAAATATTATC 59.313 40.000 0.00 0.00 0.00 1.75
356 357 5.451798 CCCGGTTCTGCAAGCAAAATATTAT 60.452 40.000 0.00 0.00 0.00 1.28
357 358 4.142271 CCCGGTTCTGCAAGCAAAATATTA 60.142 41.667 0.00 0.00 0.00 0.98
358 359 3.368323 CCCGGTTCTGCAAGCAAAATATT 60.368 43.478 0.00 0.00 0.00 1.28
359 360 2.166254 CCCGGTTCTGCAAGCAAAATAT 59.834 45.455 0.00 0.00 0.00 1.28
360 361 1.543802 CCCGGTTCTGCAAGCAAAATA 59.456 47.619 0.00 0.00 0.00 1.40
361 362 0.318120 CCCGGTTCTGCAAGCAAAAT 59.682 50.000 0.00 0.00 0.00 1.82
362 363 1.739049 CCCGGTTCTGCAAGCAAAA 59.261 52.632 0.00 0.00 0.00 2.44
363 364 2.855514 GCCCGGTTCTGCAAGCAAA 61.856 57.895 0.00 0.00 0.00 3.68
364 365 3.294493 GCCCGGTTCTGCAAGCAA 61.294 61.111 0.00 0.00 0.00 3.91
365 366 4.577677 TGCCCGGTTCTGCAAGCA 62.578 61.111 0.00 0.00 33.87 3.91
366 367 4.043200 GTGCCCGGTTCTGCAAGC 62.043 66.667 4.59 0.00 39.57 4.01
367 368 2.594303 TGTGCCCGGTTCTGCAAG 60.594 61.111 4.59 0.00 39.57 4.01
368 369 2.904866 GTGTGCCCGGTTCTGCAA 60.905 61.111 4.59 0.00 39.57 4.08
369 370 4.947147 GGTGTGCCCGGTTCTGCA 62.947 66.667 0.00 0.00 34.54 4.41
378 379 0.680280 TCTAGACTCTCGGTGTGCCC 60.680 60.000 0.00 0.00 0.00 5.36
379 380 1.174783 TTCTAGACTCTCGGTGTGCC 58.825 55.000 0.00 0.00 0.00 5.01
380 381 3.246619 CTTTTCTAGACTCTCGGTGTGC 58.753 50.000 0.00 0.00 0.00 4.57
381 382 4.023107 TCACTTTTCTAGACTCTCGGTGTG 60.023 45.833 0.00 0.00 0.00 3.82
382 383 4.142790 TCACTTTTCTAGACTCTCGGTGT 58.857 43.478 0.00 0.00 0.00 4.16
383 384 4.768130 TCACTTTTCTAGACTCTCGGTG 57.232 45.455 0.00 0.00 0.00 4.94
384 385 5.010933 TGATCACTTTTCTAGACTCTCGGT 58.989 41.667 0.00 0.00 0.00 4.69
385 386 5.568685 TGATCACTTTTCTAGACTCTCGG 57.431 43.478 0.00 0.00 0.00 4.63
386 387 6.616947 AGTTGATCACTTTTCTAGACTCTCG 58.383 40.000 0.00 0.00 27.32 4.04
387 388 9.730420 GATAGTTGATCACTTTTCTAGACTCTC 57.270 37.037 0.00 0.00 36.88 3.20
388 389 9.249053 TGATAGTTGATCACTTTTCTAGACTCT 57.751 33.333 0.00 0.00 39.78 3.24
403 404 5.333645 CGCTAAACAGGCATGATAGTTGATC 60.334 44.000 4.84 0.00 34.84 2.92
404 405 4.512944 CGCTAAACAGGCATGATAGTTGAT 59.487 41.667 4.84 0.00 0.00 2.57
405 406 3.871006 CGCTAAACAGGCATGATAGTTGA 59.129 43.478 4.84 0.00 0.00 3.18
406 407 3.871006 TCGCTAAACAGGCATGATAGTTG 59.129 43.478 4.84 4.98 0.00 3.16
407 408 4.122776 CTCGCTAAACAGGCATGATAGTT 58.877 43.478 4.84 0.00 0.00 2.24
408 409 3.722147 CTCGCTAAACAGGCATGATAGT 58.278 45.455 4.84 0.00 0.00 2.12
409 410 2.478134 GCTCGCTAAACAGGCATGATAG 59.522 50.000 4.84 8.41 0.00 2.08
410 411 2.158971 TGCTCGCTAAACAGGCATGATA 60.159 45.455 4.84 0.00 0.00 2.15
411 412 1.303309 GCTCGCTAAACAGGCATGAT 58.697 50.000 4.84 0.00 0.00 2.45
412 413 0.036483 TGCTCGCTAAACAGGCATGA 60.036 50.000 4.84 0.00 0.00 3.07
413 414 1.019673 ATGCTCGCTAAACAGGCATG 58.980 50.000 0.00 0.00 41.26 4.06
414 415 2.620251 TATGCTCGCTAAACAGGCAT 57.380 45.000 0.00 0.00 44.31 4.40
415 416 2.103094 AGATATGCTCGCTAAACAGGCA 59.897 45.455 0.00 0.00 37.32 4.75
416 417 2.760374 AGATATGCTCGCTAAACAGGC 58.240 47.619 0.00 0.00 0.00 4.85
417 418 5.533482 ACTTAGATATGCTCGCTAAACAGG 58.467 41.667 0.00 0.00 0.00 4.00
418 419 6.074088 CCAACTTAGATATGCTCGCTAAACAG 60.074 42.308 0.00 0.00 0.00 3.16
419 420 5.753438 CCAACTTAGATATGCTCGCTAAACA 59.247 40.000 0.00 0.00 0.00 2.83
420 421 5.983720 TCCAACTTAGATATGCTCGCTAAAC 59.016 40.000 0.00 0.00 0.00 2.01
421 422 6.156748 TCCAACTTAGATATGCTCGCTAAA 57.843 37.500 0.00 0.00 0.00 1.85
422 423 5.784578 TCCAACTTAGATATGCTCGCTAA 57.215 39.130 0.00 0.00 0.00 3.09
423 424 5.476945 TCATCCAACTTAGATATGCTCGCTA 59.523 40.000 0.00 0.00 0.00 4.26
424 425 4.281941 TCATCCAACTTAGATATGCTCGCT 59.718 41.667 0.00 0.00 0.00 4.93
425 426 4.560128 TCATCCAACTTAGATATGCTCGC 58.440 43.478 0.00 0.00 0.00 5.03
426 427 4.624882 GCTCATCCAACTTAGATATGCTCG 59.375 45.833 0.00 0.00 0.00 5.03
427 428 4.624882 CGCTCATCCAACTTAGATATGCTC 59.375 45.833 0.00 0.00 0.00 4.26
428 429 4.039730 ACGCTCATCCAACTTAGATATGCT 59.960 41.667 0.00 0.00 0.00 3.79
429 430 4.310769 ACGCTCATCCAACTTAGATATGC 58.689 43.478 0.00 0.00 0.00 3.14
430 431 6.914259 TCTACGCTCATCCAACTTAGATATG 58.086 40.000 0.00 0.00 0.00 1.78
431 432 7.147983 GGATCTACGCTCATCCAACTTAGATAT 60.148 40.741 0.00 0.00 38.84 1.63
432 433 6.151312 GGATCTACGCTCATCCAACTTAGATA 59.849 42.308 0.00 0.00 38.84 1.98
433 434 5.047660 GGATCTACGCTCATCCAACTTAGAT 60.048 44.000 0.00 0.00 38.84 1.98
434 435 4.278669 GGATCTACGCTCATCCAACTTAGA 59.721 45.833 0.00 0.00 38.84 2.10
435 436 4.551388 GGATCTACGCTCATCCAACTTAG 58.449 47.826 0.00 0.00 38.84 2.18
436 437 3.321111 GGGATCTACGCTCATCCAACTTA 59.679 47.826 8.84 0.00 40.55 2.24
437 438 2.103263 GGGATCTACGCTCATCCAACTT 59.897 50.000 8.84 0.00 40.55 2.66
438 439 1.689273 GGGATCTACGCTCATCCAACT 59.311 52.381 8.84 0.00 40.55 3.16
439 440 1.603172 CGGGATCTACGCTCATCCAAC 60.603 57.143 8.84 0.00 40.55 3.77
440 441 0.673985 CGGGATCTACGCTCATCCAA 59.326 55.000 8.84 0.00 40.55 3.53
441 442 1.179174 CCGGGATCTACGCTCATCCA 61.179 60.000 0.00 0.00 40.55 3.41
442 443 0.894184 TCCGGGATCTACGCTCATCC 60.894 60.000 0.00 0.00 38.34 3.51
443 444 0.959553 TTCCGGGATCTACGCTCATC 59.040 55.000 0.00 0.00 0.00 2.92
444 445 1.068741 GTTTCCGGGATCTACGCTCAT 59.931 52.381 0.00 0.00 0.00 2.90
445 446 0.458669 GTTTCCGGGATCTACGCTCA 59.541 55.000 0.00 0.00 0.00 4.26
446 447 0.249363 GGTTTCCGGGATCTACGCTC 60.249 60.000 0.00 0.00 0.00 5.03
447 448 1.683418 GGGTTTCCGGGATCTACGCT 61.683 60.000 0.00 0.00 0.00 5.07
448 449 1.227468 GGGTTTCCGGGATCTACGC 60.227 63.158 0.00 1.83 0.00 4.42
449 450 0.756903 ATGGGTTTCCGGGATCTACG 59.243 55.000 0.00 0.00 35.24 3.51
450 451 2.038164 GGTATGGGTTTCCGGGATCTAC 59.962 54.545 0.00 0.00 35.24 2.59
451 452 2.332117 GGTATGGGTTTCCGGGATCTA 58.668 52.381 0.00 0.00 35.24 1.98
452 453 1.137697 GGTATGGGTTTCCGGGATCT 58.862 55.000 0.00 0.00 35.24 2.75
453 454 0.841289 TGGTATGGGTTTCCGGGATC 59.159 55.000 0.00 0.00 35.24 3.36
454 455 0.549469 GTGGTATGGGTTTCCGGGAT 59.451 55.000 0.00 0.00 35.24 3.85
455 456 1.564483 GGTGGTATGGGTTTCCGGGA 61.564 60.000 0.00 0.00 35.24 5.14
456 457 1.077285 GGTGGTATGGGTTTCCGGG 60.077 63.158 0.00 0.00 35.24 5.73
457 458 0.330267 AAGGTGGTATGGGTTTCCGG 59.670 55.000 0.00 0.00 35.24 5.14
458 459 1.003812 TGAAGGTGGTATGGGTTTCCG 59.996 52.381 0.00 0.00 35.24 4.30
459 460 2.307686 TCTGAAGGTGGTATGGGTTTCC 59.692 50.000 0.00 0.00 0.00 3.13
460 461 3.713826 TCTGAAGGTGGTATGGGTTTC 57.286 47.619 0.00 0.00 0.00 2.78
461 462 4.675063 AATCTGAAGGTGGTATGGGTTT 57.325 40.909 0.00 0.00 0.00 3.27
462 463 4.675063 AAATCTGAAGGTGGTATGGGTT 57.325 40.909 0.00 0.00 0.00 4.11
463 464 4.344104 CAAAATCTGAAGGTGGTATGGGT 58.656 43.478 0.00 0.00 0.00 4.51
464 465 3.701040 CCAAAATCTGAAGGTGGTATGGG 59.299 47.826 0.00 0.00 0.00 4.00
465 466 3.701040 CCCAAAATCTGAAGGTGGTATGG 59.299 47.826 3.98 0.00 0.00 2.74
501 502 1.610554 GATGCATTGCTGGGCTTGGT 61.611 55.000 10.49 0.00 0.00 3.67
502 503 1.143183 GATGCATTGCTGGGCTTGG 59.857 57.895 10.49 0.00 0.00 3.61
508 509 3.014623 TGAAGAGAAGATGCATTGCTGG 58.985 45.455 10.49 0.00 0.00 4.85
511 512 2.751259 TGGTGAAGAGAAGATGCATTGC 59.249 45.455 0.00 0.46 0.00 3.56
533 537 0.918983 GGATTCTGGTGGGGTGATGA 59.081 55.000 0.00 0.00 0.00 2.92
541 545 4.335416 ACACTATTGTTGGATTCTGGTGG 58.665 43.478 0.00 0.00 28.43 4.61
565 569 8.454106 GCCTAAAGGTGTATGCAAAGATATATG 58.546 37.037 0.00 0.00 37.57 1.78
569 573 5.750524 TGCCTAAAGGTGTATGCAAAGATA 58.249 37.500 0.00 0.00 37.57 1.98
570 574 4.599041 TGCCTAAAGGTGTATGCAAAGAT 58.401 39.130 0.00 0.00 37.57 2.40
579 584 5.889289 AGTTTTCAAGTTGCCTAAAGGTGTA 59.111 36.000 0.00 0.00 37.57 2.90
595 600 8.715191 ACTTTTTATGCAATGTCAGTTTTCAA 57.285 26.923 0.00 0.00 0.00 2.69
630 635 6.691508 AGAAATCCTTATCAAAGTTGTTGCC 58.308 36.000 0.00 0.00 0.00 4.52
659 664 5.582689 ACAAAAACACTTCTCTTTGGGAG 57.417 39.130 0.00 0.00 43.12 4.30
680 685 6.986250 AGAGAAAGAATTGGTGAATGGAAAC 58.014 36.000 0.00 0.00 0.00 2.78
684 689 8.964772 AGAATTAGAGAAAGAATTGGTGAATGG 58.035 33.333 0.00 0.00 0.00 3.16
688 693 9.573166 TGAAAGAATTAGAGAAAGAATTGGTGA 57.427 29.630 0.00 0.00 0.00 4.02
727 732 1.344438 TGCGGACAGAAGTGATTGTCT 59.656 47.619 4.82 0.00 42.52 3.41
728 733 1.461127 GTGCGGACAGAAGTGATTGTC 59.539 52.381 0.63 0.00 42.25 3.18
820 1103 1.507141 CGGGCCTGCCAACGATATTC 61.507 60.000 10.86 0.00 37.98 1.75
828 1137 2.679642 CAATTCCGGGCCTGCCAA 60.680 61.111 5.85 0.67 37.98 4.52
887 2530 3.371168 CAGTTGCGTGTATGCTGTTTTT 58.629 40.909 0.00 0.00 35.36 1.94
888 2531 2.858260 GCAGTTGCGTGTATGCTGTTTT 60.858 45.455 0.00 0.00 35.78 2.43
889 2532 1.334960 GCAGTTGCGTGTATGCTGTTT 60.335 47.619 0.00 0.00 35.78 2.83
890 2533 0.238289 GCAGTTGCGTGTATGCTGTT 59.762 50.000 0.00 0.00 35.78 3.16
891 2534 1.577328 GGCAGTTGCGTGTATGCTGT 61.577 55.000 0.00 0.00 43.26 4.40
892 2535 1.135315 GGCAGTTGCGTGTATGCTG 59.865 57.895 0.00 0.00 43.26 4.41
893 2536 2.040544 GGGCAGTTGCGTGTATGCT 61.041 57.895 0.00 0.00 43.26 3.79
894 2537 1.982073 GAGGGCAGTTGCGTGTATGC 61.982 60.000 0.00 0.00 43.26 3.14
895 2538 1.695893 CGAGGGCAGTTGCGTGTATG 61.696 60.000 0.00 0.00 43.26 2.39
896 2539 1.447838 CGAGGGCAGTTGCGTGTAT 60.448 57.895 0.00 0.00 43.26 2.29
897 2540 2.048597 CGAGGGCAGTTGCGTGTA 60.049 61.111 0.00 0.00 43.26 2.90
898 2541 3.865929 CTCGAGGGCAGTTGCGTGT 62.866 63.158 3.91 0.00 43.26 4.49
899 2542 3.114616 CTCGAGGGCAGTTGCGTG 61.115 66.667 3.91 0.00 43.26 5.34
1236 2927 3.986116 GAAGACGGGGAGAGGGGCT 62.986 68.421 0.00 0.00 0.00 5.19
1980 3671 4.873810 TTGCGGCACTGGCACTGT 62.874 61.111 0.05 0.00 43.71 3.55
2003 3694 2.650778 CGGCCTTTTTCCAGCACC 59.349 61.111 0.00 0.00 0.00 5.01
2064 3755 1.741770 GATTCACTTGTCCGCGGCT 60.742 57.895 23.51 0.00 0.00 5.52
2086 3777 2.390938 TGTACGAACTGCGAAGAACAG 58.609 47.619 0.00 0.00 44.57 3.16
2112 3803 7.838884 ACTACAGAGTACAAAGTAGGAATTCC 58.161 38.462 17.31 17.31 38.54 3.01
2117 3808 9.610705 CTACATACTACAGAGTACAAAGTAGGA 57.389 37.037 17.36 12.26 41.01 2.94
2118 3809 9.393512 ACTACATACTACAGAGTACAAAGTAGG 57.606 37.037 17.36 10.99 41.01 3.18
2129 3820 6.093771 ACTTGAACGGACTACATACTACAGAG 59.906 42.308 0.00 0.00 0.00 3.35
2131 3822 6.192234 ACTTGAACGGACTACATACTACAG 57.808 41.667 0.00 0.00 0.00 2.74
2132 3823 6.579666 AACTTGAACGGACTACATACTACA 57.420 37.500 0.00 0.00 0.00 2.74
2133 3824 7.483059 GTGTAACTTGAACGGACTACATACTAC 59.517 40.741 0.00 0.00 0.00 2.73
2134 3825 7.174772 TGTGTAACTTGAACGGACTACATACTA 59.825 37.037 0.00 0.00 38.04 1.82
2135 3826 6.016024 TGTGTAACTTGAACGGACTACATACT 60.016 38.462 0.00 0.00 38.04 2.12
2152 3849 6.147164 GCGTATGCCATTACATATGTGTAACT 59.853 38.462 18.81 4.76 43.02 2.24
2158 3855 7.606073 TGAATTAGCGTATGCCATTACATATGT 59.394 33.333 13.93 13.93 44.31 2.29
2164 3861 5.924475 ACTGAATTAGCGTATGCCATTAC 57.076 39.130 2.51 0.00 44.31 1.89
2204 3901 3.012518 AGGCTGGCGCATAATCATATTC 58.987 45.455 10.83 0.00 38.10 1.75
2206 3903 2.795231 AGGCTGGCGCATAATCATAT 57.205 45.000 10.83 0.00 38.10 1.78
2207 3904 2.566833 AAGGCTGGCGCATAATCATA 57.433 45.000 10.83 0.00 38.10 2.15
2208 3905 2.154462 GTAAGGCTGGCGCATAATCAT 58.846 47.619 10.83 0.00 38.10 2.45
2209 3906 1.593196 GTAAGGCTGGCGCATAATCA 58.407 50.000 10.83 0.00 38.10 2.57
2210 3907 0.875059 GGTAAGGCTGGCGCATAATC 59.125 55.000 10.83 0.00 38.10 1.75
2222 4016 4.380973 GGCAAAGAGAAATTCAGGTAAGGC 60.381 45.833 0.00 0.00 0.00 4.35
2232 4026 4.038402 CACCAAGTCAGGCAAAGAGAAATT 59.962 41.667 0.00 0.00 0.00 1.82
2237 4031 1.605710 CACACCAAGTCAGGCAAAGAG 59.394 52.381 0.00 0.00 0.00 2.85
2251 4045 3.195610 TGGTAATTTGCACAAACACACCA 59.804 39.130 15.79 15.79 36.87 4.17
2252 4046 3.786635 TGGTAATTTGCACAAACACACC 58.213 40.909 12.39 12.39 33.14 4.16
2271 4065 1.669115 CCAAGCACACCTCGTCTGG 60.669 63.158 0.00 0.00 0.00 3.86
2281 4075 1.885887 GCAGATTTGTACCCAAGCACA 59.114 47.619 0.00 0.00 0.00 4.57
2337 4132 9.147364 GAAGAACAATTTCGCAAAAGAAAAATC 57.853 29.630 0.00 0.00 42.52 2.17
2343 4138 7.870826 TCTATGAAGAACAATTTCGCAAAAGA 58.129 30.769 0.00 0.00 36.78 2.52
2375 4170 7.884257 TGAATCTATGATGAACAGTTTTGCAA 58.116 30.769 0.00 0.00 0.00 4.08
2450 4253 2.940410 TGACAGAAACCAAACCGTTCTC 59.060 45.455 0.00 0.00 0.00 2.87
2557 4360 5.123344 GCAAGTAGGATGTACGGATGTTTTT 59.877 40.000 0.00 0.00 0.00 1.94
2562 4365 2.034179 TCGCAAGTAGGATGTACGGATG 59.966 50.000 0.00 0.00 39.48 3.51
2567 4370 6.147328 AGTTTTCTTTCGCAAGTAGGATGTAC 59.853 38.462 0.00 0.00 39.48 2.90
2574 4377 5.571778 ACGTAGTTTTCTTTCGCAAGTAG 57.428 39.130 0.00 0.00 37.78 2.57
2662 6092 6.563939 GCACCAAAAATCCGAATTTTCACTTC 60.564 38.462 0.00 0.00 42.82 3.01
2665 6095 4.509600 TGCACCAAAAATCCGAATTTTCAC 59.490 37.500 0.00 0.00 42.82 3.18
2666 6096 4.697514 TGCACCAAAAATCCGAATTTTCA 58.302 34.783 0.00 0.00 42.82 2.69
2671 6101 5.596836 ACATATGCACCAAAAATCCGAAT 57.403 34.783 1.58 0.00 0.00 3.34
2673 6103 5.825151 TCATACATATGCACCAAAAATCCGA 59.175 36.000 1.58 0.00 33.76 4.55
2674 6104 6.070897 TCATACATATGCACCAAAAATCCG 57.929 37.500 1.58 0.00 33.76 4.18
2675 6105 6.449698 CCTCATACATATGCACCAAAAATCC 58.550 40.000 1.58 0.00 33.76 3.01
2679 6109 4.865905 ACCCTCATACATATGCACCAAAA 58.134 39.130 1.58 0.00 33.76 2.44
2680 6110 4.518278 ACCCTCATACATATGCACCAAA 57.482 40.909 1.58 0.00 33.76 3.28
2681 6111 5.309282 TCATACCCTCATACATATGCACCAA 59.691 40.000 1.58 0.00 33.76 3.67
2682 6112 4.843516 TCATACCCTCATACATATGCACCA 59.156 41.667 1.58 0.00 33.76 4.17
2683 6113 5.420725 TCATACCCTCATACATATGCACC 57.579 43.478 1.58 0.00 33.76 5.01
2684 6114 9.265901 GATAATCATACCCTCATACATATGCAC 57.734 37.037 1.58 0.00 33.76 4.57
2685 6115 8.432013 GGATAATCATACCCTCATACATATGCA 58.568 37.037 1.58 0.00 33.76 3.96
2686 6116 8.654997 AGGATAATCATACCCTCATACATATGC 58.345 37.037 1.58 0.00 33.76 3.14
2692 6122 9.384764 GCTTAAAGGATAATCATACCCTCATAC 57.615 37.037 0.00 0.00 0.00 2.39
2693 6123 8.548877 GGCTTAAAGGATAATCATACCCTCATA 58.451 37.037 0.00 0.00 0.00 2.15
2697 6127 6.780198 TGGCTTAAAGGATAATCATACCCT 57.220 37.500 0.00 0.00 0.00 4.34
2698 6128 7.004691 ACTTGGCTTAAAGGATAATCATACCC 58.995 38.462 0.00 0.00 0.00 3.69
2699 6129 9.220767 CTACTTGGCTTAAAGGATAATCATACC 57.779 37.037 0.00 0.00 0.00 2.73
2700 6130 9.780186 ACTACTTGGCTTAAAGGATAATCATAC 57.220 33.333 0.00 0.00 0.00 2.39
2703 6133 9.778741 CATACTACTTGGCTTAAAGGATAATCA 57.221 33.333 0.00 0.00 0.00 2.57
2704 6134 9.220767 CCATACTACTTGGCTTAAAGGATAATC 57.779 37.037 0.00 0.00 0.00 1.75
2705 6135 8.164070 CCCATACTACTTGGCTTAAAGGATAAT 58.836 37.037 0.00 0.00 32.60 1.28
2706 6136 7.420913 CCCCATACTACTTGGCTTAAAGGATAA 60.421 40.741 0.00 0.00 32.60 1.75
2723 6493 2.815215 CGGATGTACGTCCCCCATACTA 60.815 54.545 25.31 0.00 34.67 1.82
2724 6494 1.713297 GGATGTACGTCCCCCATACT 58.287 55.000 21.77 0.00 31.82 2.12
2725 6495 0.316204 CGGATGTACGTCCCCCATAC 59.684 60.000 25.31 2.32 34.67 2.39
2726 6496 0.185658 TCGGATGTACGTCCCCCATA 59.814 55.000 25.31 6.18 34.67 2.74
2727 6497 0.688418 TTCGGATGTACGTCCCCCAT 60.688 55.000 25.31 0.00 34.67 4.00
2728 6498 1.305129 TTCGGATGTACGTCCCCCA 60.305 57.895 25.31 9.35 34.67 4.96
2733 6503 3.128242 TCTTTCTCCTTCGGATGTACGTC 59.872 47.826 6.53 6.53 34.94 4.34
2736 6506 5.932883 ACTTTTCTTTCTCCTTCGGATGTAC 59.067 40.000 0.00 0.00 0.00 2.90
2759 6529 7.645340 GTGCATATGAATTGTTGATGGTAGAAC 59.355 37.037 6.97 0.00 0.00 3.01
2796 6566 3.018856 TCGCAGGCAAATCTGAATTCAT 58.981 40.909 8.96 0.00 36.93 2.57
2858 6628 2.189594 TGGTGACAATGCTCTTCCAG 57.810 50.000 0.00 0.00 37.44 3.86
2916 6686 6.121590 TGGCAAGAATATTTATGCTGAGTCA 58.878 36.000 19.56 10.31 38.79 3.41
2917 6687 6.624352 TGGCAAGAATATTTATGCTGAGTC 57.376 37.500 19.56 8.52 38.79 3.36
2918 6688 6.040166 CCTTGGCAAGAATATTTATGCTGAGT 59.960 38.462 28.18 0.00 38.79 3.41
2965 6735 3.699894 CGTGGCTGCCCAGAGAGT 61.700 66.667 17.53 0.00 43.18 3.24
2966 6736 4.463879 CCGTGGCTGCCCAGAGAG 62.464 72.222 17.53 0.86 43.18 3.20
3011 6781 6.584471 TGCCTTTAGGGTATATTTCCTTCA 57.416 37.500 0.00 0.00 37.43 3.02
3012 6782 9.582648 TTATTGCCTTTAGGGTATATTTCCTTC 57.417 33.333 0.00 0.00 37.43 3.46
3021 6791 9.709387 ACAACTTTATTATTGCCTTTAGGGTAT 57.291 29.630 0.00 0.00 37.43 2.73
3022 6792 9.536510 AACAACTTTATTATTGCCTTTAGGGTA 57.463 29.630 0.00 0.00 37.43 3.69
3023 6793 8.430573 AACAACTTTATTATTGCCTTTAGGGT 57.569 30.769 0.00 0.00 37.43 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.