Multiple sequence alignment - TraesCS3D01G149500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G149500 chr3D 100.000 9324 0 0 1 9324 114317820 114327143 0.000000e+00 17219.0
1 TraesCS3D01G149500 chr3A 95.797 3926 120 19 3322 7227 110314216 110318116 0.000000e+00 6294.0
2 TraesCS3D01G149500 chr3A 93.517 1928 75 21 263 2151 110309343 110311259 0.000000e+00 2822.0
3 TraesCS3D01G149500 chr3A 96.205 606 23 0 7252 7857 110318101 110318706 0.000000e+00 992.0
4 TraesCS3D01G149500 chr3A 87.514 865 66 17 7848 8706 110319097 110319925 0.000000e+00 961.0
5 TraesCS3D01G149500 chr3A 93.772 289 17 1 2170 2458 110313934 110314221 5.170000e-117 433.0
6 TraesCS3D01G149500 chr3A 90.190 316 24 2 8976 9291 110320586 110320894 1.130000e-108 405.0
7 TraesCS3D01G149500 chr3A 92.208 154 8 4 58 209 110308835 110308986 2.040000e-51 215.0
8 TraesCS3D01G149500 chr3B 94.894 3858 138 21 2170 5993 166519257 166515425 0.000000e+00 5978.0
9 TraesCS3D01G149500 chr3B 93.996 2082 84 17 7252 9303 166514497 166512427 0.000000e+00 3114.0
10 TraesCS3D01G149500 chr3B 92.530 2142 75 22 80 2169 166521398 166519290 0.000000e+00 2990.0
11 TraesCS3D01G149500 chr3B 96.753 893 19 4 6175 7066 166515419 166514536 0.000000e+00 1480.0
12 TraesCS3D01G149500 chr3B 96.667 60 2 0 7168 7227 166514541 166514482 5.960000e-17 100.0
13 TraesCS3D01G149500 chr3B 95.000 60 3 0 36 95 166521760 166521701 2.770000e-15 95.3
14 TraesCS3D01G149500 chr5B 83.472 2759 302 79 4513 7172 103467605 103464902 0.000000e+00 2427.0
15 TraesCS3D01G149500 chr5B 83.074 2759 314 77 4513 7172 105698774 105696070 0.000000e+00 2366.0
16 TraesCS3D01G149500 chr5B 86.786 946 114 9 895 1835 103469614 103468675 0.000000e+00 1044.0
17 TraesCS3D01G149500 chr5B 85.941 946 119 10 895 1835 105700848 105699912 0.000000e+00 998.0
18 TraesCS3D01G149500 chr5B 83.533 583 75 12 7723 8286 103464153 103463573 8.290000e-145 525.0
19 TraesCS3D01G149500 chr5B 86.406 434 48 8 7252 7678 103464767 103464338 1.830000e-126 464.0
20 TraesCS3D01G149500 chr5B 82.074 569 72 15 3962 4525 103468391 103467848 8.530000e-125 459.0
21 TraesCS3D01G149500 chr5B 81.898 569 73 15 3962 4525 105699628 105699085 3.970000e-123 453.0
22 TraesCS3D01G149500 chr5B 86.410 390 48 4 7902 8286 105689120 105688731 1.120000e-113 422.0
23 TraesCS3D01G149500 chr5B 90.157 254 22 3 7253 7504 105695934 105695682 2.510000e-85 327.0
24 TraesCS3D01G149500 chr5A 85.992 1285 157 19 895 2167 92441855 92440582 0.000000e+00 1354.0
25 TraesCS3D01G149500 chr5A 85.250 1322 142 27 5933 7227 92431337 92430042 0.000000e+00 1312.0
26 TraesCS3D01G149500 chr5A 82.463 1340 140 51 4513 5791 92438443 92437138 0.000000e+00 1085.0
27 TraesCS3D01G149500 chr5A 84.011 1057 115 20 7254 8286 92430055 92429029 0.000000e+00 966.0
28 TraesCS3D01G149500 chr5A 85.093 644 85 9 2457 3093 235246417 235247056 0.000000e+00 647.0
29 TraesCS3D01G149500 chr5A 80.294 680 98 19 3857 4525 92439367 92438713 1.820000e-131 481.0
30 TraesCS3D01G149500 chr5D 84.413 1328 150 31 5933 7227 97264497 97263194 0.000000e+00 1253.0
31 TraesCS3D01G149500 chr5D 81.254 1499 176 51 4514 5948 97265974 97264517 0.000000e+00 1114.0
32 TraesCS3D01G149500 chr5D 86.330 951 111 19 897 1835 97273816 97272873 0.000000e+00 1018.0
33 TraesCS3D01G149500 chr5D 84.674 1057 114 17 7254 8286 97263207 97262175 0.000000e+00 1011.0
34 TraesCS3D01G149500 chr5D 86.986 438 42 7 4010 4446 97271969 97271546 6.550000e-131 479.0
35 TraesCS3D01G149500 chr5D 86.634 202 13 4 7320 7521 97187750 97187563 2.640000e-50 211.0
36 TraesCS3D01G149500 chr5D 85.350 157 19 1 8130 8286 97074130 97073978 9.690000e-35 159.0
37 TraesCS3D01G149500 chr4A 82.715 862 113 20 2491 3317 678296303 678297163 0.000000e+00 734.0
38 TraesCS3D01G149500 chr4A 79.530 894 139 24 2458 3321 395023805 395022926 1.730000e-166 597.0
39 TraesCS3D01G149500 chrUn 84.496 645 90 10 2457 3093 115653604 115652962 6.150000e-176 628.0
40 TraesCS3D01G149500 chr4D 79.408 879 144 32 2452 3321 173088684 173089534 3.750000e-163 586.0
41 TraesCS3D01G149500 chr7A 78.977 899 144 32 2454 3321 447747921 447748805 1.050000e-158 571.0
42 TraesCS3D01G149500 chr2B 83.280 622 97 7 2477 3093 499003131 499003750 4.890000e-157 566.0
43 TraesCS3D01G149500 chr2B 83.217 143 21 3 3182 3322 499226628 499226769 2.730000e-25 128.0
44 TraesCS3D01G149500 chr7D 77.790 887 157 32 2458 3321 101479988 101479119 2.320000e-140 510.0
45 TraesCS3D01G149500 chr7D 74.406 547 102 37 2491 3020 428042798 428043323 5.710000e-47 200.0
46 TraesCS3D01G149500 chr7D 81.068 206 37 2 3117 3321 394112397 394112601 7.490000e-36 163.0
47 TraesCS3D01G149500 chr7B 77.401 885 167 30 2458 3321 58549121 58548249 6.500000e-136 496.0
48 TraesCS3D01G149500 chr7B 82.778 180 30 1 3004 3182 385181494 385181673 9.690000e-35 159.0
49 TraesCS3D01G149500 chr7B 97.222 36 1 0 3160 3195 370196633 370196598 2.810000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G149500 chr3D 114317820 114327143 9323 False 17219.000000 17219 100.000000 1 9324 1 chr3D.!!$F1 9323
1 TraesCS3D01G149500 chr3A 110308835 110320894 12059 False 1731.714286 6294 92.743286 58 9291 7 chr3A.!!$F1 9233
2 TraesCS3D01G149500 chr3B 166512427 166521760 9333 True 2292.883333 5978 94.973333 36 9303 6 chr3B.!!$R1 9267
3 TraesCS3D01G149500 chr5B 105695682 105700848 5166 True 1036.000000 2366 85.267500 895 7504 4 chr5B.!!$R3 6609
4 TraesCS3D01G149500 chr5B 103463573 103469614 6041 True 983.800000 2427 84.454200 895 8286 5 chr5B.!!$R2 7391
5 TraesCS3D01G149500 chr5A 92429029 92431337 2308 True 1139.000000 1312 84.630500 5933 8286 2 chr5A.!!$R1 2353
6 TraesCS3D01G149500 chr5A 92437138 92441855 4717 True 973.333333 1354 82.916333 895 5791 3 chr5A.!!$R2 4896
7 TraesCS3D01G149500 chr5A 235246417 235247056 639 False 647.000000 647 85.093000 2457 3093 1 chr5A.!!$F1 636
8 TraesCS3D01G149500 chr5D 97262175 97265974 3799 True 1126.000000 1253 83.447000 4514 8286 3 chr5D.!!$R3 3772
9 TraesCS3D01G149500 chr5D 97271546 97273816 2270 True 748.500000 1018 86.658000 897 4446 2 chr5D.!!$R4 3549
10 TraesCS3D01G149500 chr4A 678296303 678297163 860 False 734.000000 734 82.715000 2491 3317 1 chr4A.!!$F1 826
11 TraesCS3D01G149500 chr4A 395022926 395023805 879 True 597.000000 597 79.530000 2458 3321 1 chr4A.!!$R1 863
12 TraesCS3D01G149500 chrUn 115652962 115653604 642 True 628.000000 628 84.496000 2457 3093 1 chrUn.!!$R1 636
13 TraesCS3D01G149500 chr4D 173088684 173089534 850 False 586.000000 586 79.408000 2452 3321 1 chr4D.!!$F1 869
14 TraesCS3D01G149500 chr7A 447747921 447748805 884 False 571.000000 571 78.977000 2454 3321 1 chr7A.!!$F1 867
15 TraesCS3D01G149500 chr2B 499003131 499003750 619 False 566.000000 566 83.280000 2477 3093 1 chr2B.!!$F1 616
16 TraesCS3D01G149500 chr7D 101479119 101479988 869 True 510.000000 510 77.790000 2458 3321 1 chr7D.!!$R1 863
17 TraesCS3D01G149500 chr7B 58548249 58549121 872 True 496.000000 496 77.401000 2458 3321 1 chr7B.!!$R1 863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 1190 0.179062 CCTCCCTGCTCCGATTCTTG 60.179 60.000 0.00 0.0 0.00 3.02 F
1131 1832 1.684386 CCATCCTCTTCTCCGCAGCT 61.684 60.000 0.00 0.0 0.00 4.24 F
2318 5696 0.328258 ACTAGCATGTCGGCCCTTTT 59.672 50.000 0.00 0.0 0.00 2.27 F
2562 6038 0.448861 CAGCACACGAGCGTTTTACG 60.449 55.000 0.00 0.0 45.88 3.18 F
3272 6815 1.327690 CGGCAGGGAGGCTACAACTA 61.328 60.000 0.00 0.0 41.46 2.24 F
3278 6822 1.762957 GGGAGGCTACAACTATCTGCA 59.237 52.381 0.00 0.0 0.00 4.41 F
3386 6947 1.960689 CCCTCAAATGTCAAACCCGTT 59.039 47.619 0.00 0.0 0.00 4.44 F
5088 9451 3.285484 AGCAATAAGGCCACAGAAGATG 58.715 45.455 5.01 0.0 0.00 2.90 F
6016 10469 4.523083 ACTTGAAACTTGTGCAGAACCTA 58.477 39.130 0.00 0.0 0.00 3.08 F
7325 11906 2.003301 GGACTGGAATCGAGCACTTTC 58.997 52.381 0.00 0.0 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1701 2414 1.032014 TGCTTTCTGAACAACCTGCC 58.968 50.000 0.00 0.00 0.00 4.85 R
3034 6523 0.109342 ACCTGTCAGGACTTTGCCAG 59.891 55.000 26.18 0.00 37.67 4.85 R
3272 6815 0.614979 ACCCCTGACTACGTGCAGAT 60.615 55.000 14.11 0.00 34.06 2.90 R
4088 8090 1.800586 CAATGTCAAGAGTGTCCCACG 59.199 52.381 0.00 0.00 39.64 4.94 R
5088 9451 3.319122 AGGCAGGAAAAGAATGAACACAC 59.681 43.478 0.00 0.00 0.00 3.82 R
5219 9598 8.325282 GGCCGATTTAGTTTTGCATTAAATTAC 58.675 33.333 0.00 0.00 29.67 1.89 R
5345 9746 4.036734 GCAAGAACAAGAAGATTGTGTCCA 59.963 41.667 0.00 0.00 32.22 4.02 R
7023 11504 2.649190 TGCTTTTACTGGCAGTGTGAA 58.351 42.857 29.65 17.67 34.22 3.18 R
7852 12582 0.752658 AAACAAGAAAGCTGGGTGCC 59.247 50.000 0.00 0.00 44.23 5.01 R
8471 13629 0.456995 CGTCAAAGAGGAGCGAGACC 60.457 60.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.690475 TTTCGGAAAGGAAGGAGTACC 57.310 47.619 0.00 0.00 0.00 3.34
225 548 4.820173 CCCCAAATTTTCCCTATCTCGTAC 59.180 45.833 0.00 0.00 0.00 3.67
233 556 2.158505 TCCCTATCTCGTACTTCCCCTG 60.159 54.545 0.00 0.00 0.00 4.45
314 941 0.725133 TCCCTTTCCTCCCCATCTCT 59.275 55.000 0.00 0.00 0.00 3.10
315 942 1.944588 TCCCTTTCCTCCCCATCTCTA 59.055 52.381 0.00 0.00 0.00 2.43
345 972 8.100164 AGTCTTCCCTTTTCTATTTCTCTCAAG 58.900 37.037 0.00 0.00 0.00 3.02
415 1086 1.452953 AAGGACAGCGAGTGACGACA 61.453 55.000 0.00 0.00 45.77 4.35
421 1092 2.556792 CGAGTGACGACAGCGAGT 59.443 61.111 4.54 0.00 45.77 4.18
519 1190 0.179062 CCTCCCTGCTCCGATTCTTG 60.179 60.000 0.00 0.00 0.00 3.02
527 1198 2.094494 TGCTCCGATTCTTGTCTCTGAC 60.094 50.000 0.00 0.00 0.00 3.51
730 1401 3.125146 GTGTATGCGTGCTTCAAAGATGA 59.875 43.478 0.00 0.00 0.00 2.92
732 1403 2.686558 TGCGTGCTTCAAAGATGAAC 57.313 45.000 0.00 0.00 40.59 3.18
733 1404 1.946081 TGCGTGCTTCAAAGATGAACA 59.054 42.857 0.00 0.00 40.59 3.18
734 1405 2.286950 TGCGTGCTTCAAAGATGAACAC 60.287 45.455 11.09 11.09 40.59 3.32
750 1446 4.671377 TGAACACAGTTCAGTTTTGCATC 58.329 39.130 8.39 0.00 0.00 3.91
818 1515 7.912056 TGTAGATGGACAATGAGAGAAAAAG 57.088 36.000 0.00 0.00 0.00 2.27
868 1567 4.785301 CTTGTATCCATGATGACCTTGGT 58.215 43.478 0.00 0.00 40.11 3.67
869 1568 4.860802 TGTATCCATGATGACCTTGGTT 57.139 40.909 0.00 0.00 40.11 3.67
870 1569 4.525996 TGTATCCATGATGACCTTGGTTG 58.474 43.478 0.00 0.00 40.11 3.77
871 1570 3.744940 ATCCATGATGACCTTGGTTGT 57.255 42.857 0.00 0.00 40.11 3.32
872 1571 3.071874 TCCATGATGACCTTGGTTGTC 57.928 47.619 0.00 0.00 40.11 3.18
873 1572 2.374839 TCCATGATGACCTTGGTTGTCA 59.625 45.455 0.00 9.39 45.98 3.58
874 1573 2.489329 CCATGATGACCTTGGTTGTCAC 59.511 50.000 0.00 0.00 44.85 3.67
1131 1832 1.684386 CCATCCTCTTCTCCGCAGCT 61.684 60.000 0.00 0.00 0.00 4.24
1319 2021 5.303589 CCCTTTCCGTCCAGTCACTTATATA 59.696 44.000 0.00 0.00 0.00 0.86
1334 2039 9.609950 GTCACTTATATATGTCGAACCTTCTAC 57.390 37.037 0.00 0.00 0.00 2.59
1345 2050 4.807304 TCGAACCTTCTACGATTTTATGCC 59.193 41.667 0.00 0.00 0.00 4.40
1354 2059 3.886123 ACGATTTTATGCCTAGTGCCTT 58.114 40.909 0.00 0.00 40.16 4.35
1389 2095 1.837051 TCGGTTGCAGGTCAGAGGT 60.837 57.895 0.00 0.00 0.00 3.85
1542 2253 6.090223 CACGTTGCTGATTGTACTGTTATGTA 59.910 38.462 0.00 0.00 0.00 2.29
1673 2386 9.362539 TGGATGACTTTAAGTTATCTACGTTTC 57.637 33.333 22.93 10.01 40.06 2.78
1823 2536 6.779860 AGAGGTTCCTGTTTTTGCTATTCTA 58.220 36.000 0.00 0.00 0.00 2.10
1884 2597 6.040842 ACCATTGCATGCTACTAAAATAAGGG 59.959 38.462 20.33 14.19 0.00 3.95
2191 5562 7.888021 TGGATTCCATGTTCCATATGTATTACC 59.112 37.037 0.00 0.00 37.10 2.85
2318 5696 0.328258 ACTAGCATGTCGGCCCTTTT 59.672 50.000 0.00 0.00 0.00 2.27
2380 5758 4.250464 TCTGCAAAACCGGTTCATAGTAG 58.750 43.478 22.53 17.85 0.00 2.57
2396 5862 9.922305 GTTCATAGTAGCTGTTTGAATTATCAC 57.078 33.333 0.00 0.00 34.61 3.06
2562 6038 0.448861 CAGCACACGAGCGTTTTACG 60.449 55.000 0.00 0.00 45.88 3.18
2917 6404 2.579201 CTGTACCGTCAGCCCAGG 59.421 66.667 0.00 0.00 0.00 4.45
3022 6511 3.365291 CTACCTAACCGCCTGCGCA 62.365 63.158 10.98 10.98 38.24 6.09
3095 6593 2.436646 GCTTGAGCTTGCCGGCTA 60.437 61.111 29.70 20.51 43.20 3.93
3096 6594 2.754995 GCTTGAGCTTGCCGGCTAC 61.755 63.158 29.70 16.80 43.20 3.58
3097 6595 1.375908 CTTGAGCTTGCCGGCTACA 60.376 57.895 29.70 16.56 43.20 2.74
3272 6815 1.327690 CGGCAGGGAGGCTACAACTA 61.328 60.000 0.00 0.00 41.46 2.24
3278 6822 1.762957 GGGAGGCTACAACTATCTGCA 59.237 52.381 0.00 0.00 0.00 4.41
3386 6947 1.960689 CCCTCAAATGTCAAACCCGTT 59.039 47.619 0.00 0.00 0.00 4.44
3404 6965 3.947834 CCGTTTAGATTTGATCCCTTGCT 59.052 43.478 0.00 0.00 0.00 3.91
3472 7034 6.524734 ACCTTAAAATCCCTTCAGCAAAAAG 58.475 36.000 0.00 0.00 0.00 2.27
3624 7199 8.353684 TCAAAAGCATTCCGTTTTCTACATTTA 58.646 29.630 0.00 0.00 0.00 1.40
3625 7200 9.139174 CAAAAGCATTCCGTTTTCTACATTTAT 57.861 29.630 0.00 0.00 0.00 1.40
3949 7841 6.890268 GGATACTTGAGGGACCAAACTTATTT 59.110 38.462 0.00 0.00 0.00 1.40
3970 7862 7.829378 ATTTTGTATAGAGTTGAGGAACGAC 57.171 36.000 0.00 0.00 37.15 4.34
3998 7992 9.670442 ATTGGACTTCTTCCTGTTACCTATATA 57.330 33.333 0.00 0.00 46.10 0.86
3999 7993 9.670442 TTGGACTTCTTCCTGTTACCTATATAT 57.330 33.333 0.00 0.00 46.10 0.86
4230 8233 6.920817 TGTGAGTGTAATGACTAACGAAGAT 58.079 36.000 0.00 0.00 30.55 2.40
4753 9091 6.647067 GTCATATCTGTTACCAGCATACCTTC 59.353 42.308 0.00 0.00 38.66 3.46
4880 9227 3.391296 TGCCTCCCCATACTTCTAATGAC 59.609 47.826 0.00 0.00 0.00 3.06
4894 9244 6.478344 ACTTCTAATGACGCATTCTCTGAATC 59.522 38.462 8.09 0.00 35.54 2.52
5088 9451 3.285484 AGCAATAAGGCCACAGAAGATG 58.715 45.455 5.01 0.00 0.00 2.90
5345 9746 9.953565 TTTGCTAACTAGTTAATATGTTCAGGT 57.046 29.630 15.95 0.00 0.00 4.00
5375 9776 6.489361 ACAATCTTCTTGTTCTTGCTCAGAAT 59.511 34.615 2.70 0.00 43.72 2.40
5594 9995 9.953565 TGTGGAGCTAAATTGTATTTACTAACT 57.046 29.630 0.00 0.00 0.00 2.24
5754 10159 9.453572 GAAATCTGTATGAATATGCCATTCCTA 57.546 33.333 5.87 0.00 0.00 2.94
5925 10336 9.092876 GTTGACAAACATAACTTCATTTGGAAA 57.907 29.630 0.00 0.00 36.55 3.13
6016 10469 4.523083 ACTTGAAACTTGTGCAGAACCTA 58.477 39.130 0.00 0.00 0.00 3.08
6017 10470 5.133221 ACTTGAAACTTGTGCAGAACCTAT 58.867 37.500 0.00 0.00 0.00 2.57
6996 11476 7.447374 TGGTAATGAGTTTGTTGTTATGAGG 57.553 36.000 0.00 0.00 0.00 3.86
7095 11576 7.648142 CAACTCAGCATAGTTCTTGGTTTTTA 58.352 34.615 1.05 0.00 37.61 1.52
7096 11577 7.203255 ACTCAGCATAGTTCTTGGTTTTTAC 57.797 36.000 0.00 0.00 0.00 2.01
7104 11585 9.199982 CATAGTTCTTGGTTTTTACGTCTAGAA 57.800 33.333 0.00 0.00 0.00 2.10
7116 11597 3.277715 ACGTCTAGAACCTAGGCTGTAC 58.722 50.000 9.30 0.00 0.00 2.90
7161 11644 6.645306 TGTGAATGAATTATCCTGACCGTTA 58.355 36.000 0.00 0.00 0.00 3.18
7162 11645 7.279615 TGTGAATGAATTATCCTGACCGTTAT 58.720 34.615 0.00 0.00 0.00 1.89
7166 11649 5.432645 TGAATTATCCTGACCGTTATTGCA 58.567 37.500 0.00 0.00 0.00 4.08
7185 11678 6.636562 TTGCAAACTTTCTTCCCGTAATTA 57.363 33.333 0.00 0.00 0.00 1.40
7233 11812 8.558973 TTTAGAACTAGTAGTATATCTCCCGC 57.441 38.462 2.50 0.00 0.00 6.13
7234 11813 6.124316 AGAACTAGTAGTATATCTCCCGCA 57.876 41.667 2.50 0.00 0.00 5.69
7235 11814 6.540995 AGAACTAGTAGTATATCTCCCGCAA 58.459 40.000 2.50 0.00 0.00 4.85
7236 11815 7.002879 AGAACTAGTAGTATATCTCCCGCAAA 58.997 38.462 2.50 0.00 0.00 3.68
7237 11816 7.504911 AGAACTAGTAGTATATCTCCCGCAAAA 59.495 37.037 2.50 0.00 0.00 2.44
7238 11817 7.592885 ACTAGTAGTATATCTCCCGCAAAAA 57.407 36.000 0.00 0.00 0.00 1.94
7239 11818 7.659186 ACTAGTAGTATATCTCCCGCAAAAAG 58.341 38.462 0.00 0.00 0.00 2.27
7240 11819 6.726490 AGTAGTATATCTCCCGCAAAAAGA 57.274 37.500 0.00 0.00 0.00 2.52
7241 11820 7.120923 AGTAGTATATCTCCCGCAAAAAGAA 57.879 36.000 0.00 0.00 0.00 2.52
7242 11821 7.562135 AGTAGTATATCTCCCGCAAAAAGAAA 58.438 34.615 0.00 0.00 0.00 2.52
7243 11822 6.927294 AGTATATCTCCCGCAAAAAGAAAG 57.073 37.500 0.00 0.00 0.00 2.62
7244 11823 6.650120 AGTATATCTCCCGCAAAAAGAAAGA 58.350 36.000 0.00 0.00 0.00 2.52
7245 11824 7.110155 AGTATATCTCCCGCAAAAAGAAAGAA 58.890 34.615 0.00 0.00 0.00 2.52
7246 11825 6.834168 ATATCTCCCGCAAAAAGAAAGAAA 57.166 33.333 0.00 0.00 0.00 2.52
7247 11826 4.568152 TCTCCCGCAAAAAGAAAGAAAG 57.432 40.909 0.00 0.00 0.00 2.62
7248 11827 4.204012 TCTCCCGCAAAAAGAAAGAAAGA 58.796 39.130 0.00 0.00 0.00 2.52
7249 11828 4.642885 TCTCCCGCAAAAAGAAAGAAAGAA 59.357 37.500 0.00 0.00 0.00 2.52
7250 11829 5.126384 TCTCCCGCAAAAAGAAAGAAAGAAA 59.874 36.000 0.00 0.00 0.00 2.52
7325 11906 2.003301 GGACTGGAATCGAGCACTTTC 58.997 52.381 0.00 0.00 0.00 2.62
7619 12205 8.845413 AATTTAGACATATGATCAGCTCCTTC 57.155 34.615 10.38 0.00 0.00 3.46
7727 12454 8.512138 ACCGTTAAAGTTTGAAGATCCAAATAG 58.488 33.333 0.00 0.00 38.18 1.73
7762 12492 7.740519 ATTCTTGAACTTCGTTTGAAACTTG 57.259 32.000 6.49 0.00 32.66 3.16
7767 12497 6.033341 TGAACTTCGTTTGAAACTTGGAATG 58.967 36.000 6.49 1.00 32.66 2.67
7852 12582 6.364701 TGGTCATTTAATTCAGGGACTATGG 58.635 40.000 0.00 0.00 36.02 2.74
7946 13091 9.932699 CTGAGTATTTAAAATCTGATGCAGAAG 57.067 33.333 0.78 0.00 44.04 2.85
7964 13109 7.224297 TGCAGAAGTTAGAGGTTTTATTCTGT 58.776 34.615 12.15 0.00 42.49 3.41
8407 13562 4.626042 AGATGTATTCCTTGTGAGATCGC 58.374 43.478 0.00 0.00 0.00 4.58
8471 13629 8.218338 AGAAATGTTCAGTTATCTAATGGCTG 57.782 34.615 0.00 0.00 0.00 4.85
8482 13640 0.687757 TAATGGCTGGTCTCGCTCCT 60.688 55.000 0.00 0.00 0.00 3.69
8493 13651 0.457851 CTCGCTCCTCTTTGACGGAT 59.542 55.000 0.00 0.00 0.00 4.18
8551 13709 6.804677 TGCATGTTTAACAGTTGTTGATTCT 58.195 32.000 3.63 0.00 38.90 2.40
8553 13711 7.860373 TGCATGTTTAACAGTTGTTGATTCTAC 59.140 33.333 3.63 0.00 38.90 2.59
8699 13864 9.046975 CATATGTATGAAGATGCTCGCCATCAG 62.047 44.444 15.25 0.00 42.89 2.90
8774 14115 6.770746 AATCTAGAAAAATGCAGAGCACAT 57.229 33.333 0.00 0.00 43.04 3.21
8780 14121 0.800631 AATGCAGAGCACATGTGTCG 59.199 50.000 26.01 17.06 43.04 4.35
8818 14159 2.489329 CTCGGGTGTGCAAATTTCATCT 59.511 45.455 0.00 0.00 0.00 2.90
8962 14308 2.436646 AGAATCGCCGTTGCCCAG 60.437 61.111 0.00 0.00 0.00 4.45
9037 14623 4.849926 CAGAGAACGATTTTGCACTGAATG 59.150 41.667 0.00 0.00 0.00 2.67
9055 14641 2.826674 TGGAATTGAATGGAGTCCCC 57.173 50.000 6.74 0.00 30.46 4.81
9057 14643 4.876994 AATGGAATTGAATGGAGTCCCCAG 60.877 45.833 6.74 0.00 41.76 4.45
9073 14659 1.407851 CCCAGTCACCATCACCATGAG 60.408 57.143 0.00 0.00 30.57 2.90
9201 14790 4.099824 CGCACTACACGTATGTATCAACA 58.900 43.478 0.00 0.00 40.57 3.33
9296 14889 2.125753 CTGCCAGTCCAGTCGAGC 60.126 66.667 0.00 0.00 0.00 5.03
9303 14896 4.700365 TCCAGTCGAGCACGCACG 62.700 66.667 0.00 2.28 39.58 5.34
9309 14902 4.498520 CGAGCACGCACGGGAGAT 62.499 66.667 0.00 0.00 0.00 2.75
9310 14903 2.805546 GAGCACGCACGGGAGATA 59.194 61.111 0.00 0.00 0.00 1.98
9311 14904 1.589196 GAGCACGCACGGGAGATAC 60.589 63.158 0.00 0.00 0.00 2.24
9312 14905 2.585247 GCACGCACGGGAGATACC 60.585 66.667 0.00 0.00 38.08 2.73
9320 14913 3.846180 GGGAGATACCGCCGTGTA 58.154 61.111 0.00 0.00 40.11 2.90
9321 14914 2.118132 GGGAGATACCGCCGTGTAA 58.882 57.895 0.00 0.00 40.11 2.41
9322 14915 0.677842 GGGAGATACCGCCGTGTAAT 59.322 55.000 0.00 0.00 40.11 1.89
9323 14916 1.604693 GGGAGATACCGCCGTGTAATG 60.605 57.143 0.00 0.00 40.11 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.103627 AGGTACTCCTTCCTTTCCGAAAAA 59.896 41.667 0.00 0.00 42.12 1.94
9 10 3.649502 AGGTACTCCTTCCTTTCCGAAAA 59.350 43.478 0.00 0.00 42.12 2.29
10 11 3.245441 AGGTACTCCTTCCTTTCCGAAA 58.755 45.455 0.00 0.00 42.12 3.46
11 12 2.898662 AGGTACTCCTTCCTTTCCGAA 58.101 47.619 0.00 0.00 42.12 4.30
12 13 2.617840 AGGTACTCCTTCCTTTCCGA 57.382 50.000 0.00 0.00 42.12 4.55
23 24 0.324943 TGAAGGCTGCAAGGTACTCC 59.675 55.000 0.50 0.00 38.49 3.85
24 25 2.185004 TTGAAGGCTGCAAGGTACTC 57.815 50.000 3.04 0.00 38.49 2.59
26 27 5.582689 AATTATTGAAGGCTGCAAGGTAC 57.417 39.130 14.39 0.00 0.00 3.34
27 28 6.603940 AAAATTATTGAAGGCTGCAAGGTA 57.396 33.333 14.39 0.00 0.00 3.08
28 29 5.488262 AAAATTATTGAAGGCTGCAAGGT 57.512 34.783 14.39 0.00 0.00 3.50
29 30 6.633856 AGTAAAATTATTGAAGGCTGCAAGG 58.366 36.000 14.39 0.00 0.00 3.61
30 31 8.538409 AAAGTAAAATTATTGAAGGCTGCAAG 57.462 30.769 14.39 0.00 0.00 4.01
31 32 8.900983 AAAAGTAAAATTATTGAAGGCTGCAA 57.099 26.923 11.06 11.06 0.00 4.08
32 33 9.988815 TTAAAAGTAAAATTATTGAAGGCTGCA 57.011 25.926 0.50 0.00 0.00 4.41
116 435 6.146837 CCATTTTTGCGGATAGATGTAGAGAG 59.853 42.308 0.00 0.00 0.00 3.20
299 925 3.012959 ACTGACTAGAGATGGGGAGGAAA 59.987 47.826 0.00 0.00 0.00 3.13
314 941 8.437274 AGAAATAGAAAAGGGAAGACTGACTA 57.563 34.615 0.00 0.00 0.00 2.59
315 942 7.236640 AGAGAAATAGAAAAGGGAAGACTGACT 59.763 37.037 0.00 0.00 0.00 3.41
469 1140 2.499732 GAAAGCTTTCACGGCGCG 60.500 61.111 29.93 0.00 37.15 6.86
482 1153 1.199615 GGGAGAGGGACCAGAGAAAG 58.800 60.000 0.00 0.00 0.00 2.62
519 1190 5.393027 GGTCAGAGAGAAATCAGTCAGAGAC 60.393 48.000 0.00 0.00 0.00 3.36
527 1198 3.523547 CTGCAGGTCAGAGAGAAATCAG 58.476 50.000 5.57 0.00 45.72 2.90
654 1325 3.446516 ACACGATTACTAGTGGTTCCTCC 59.553 47.826 5.39 0.00 42.25 4.30
661 1332 5.062183 CACACAATGACACGATTACTAGTGG 59.938 44.000 5.39 0.00 42.25 4.00
730 1401 4.158394 ACAGATGCAAAACTGAACTGTGTT 59.842 37.500 20.23 0.00 36.11 3.32
732 1403 4.201940 TGACAGATGCAAAACTGAACTGTG 60.202 41.667 20.23 0.72 37.27 3.66
733 1404 3.947196 TGACAGATGCAAAACTGAACTGT 59.053 39.130 20.23 12.01 39.32 3.55
734 1405 4.556942 TGACAGATGCAAAACTGAACTG 57.443 40.909 20.23 9.62 37.54 3.16
777 1473 6.144402 CCATCTACAATGCAAAAGTGAAACAC 59.856 38.462 0.00 0.00 41.43 3.32
873 1572 7.458409 AATATTCAATTCAGCACTGACAAGT 57.542 32.000 0.00 0.00 39.66 3.16
874 1573 7.201410 GCAAATATTCAATTCAGCACTGACAAG 60.201 37.037 0.00 0.00 39.66 3.16
1131 1832 2.508526 GGAAGAAGCAGAAGCAAGGAA 58.491 47.619 0.00 0.00 45.49 3.36
1319 2021 6.018994 GCATAAAATCGTAGAAGGTTCGACAT 60.019 38.462 4.22 0.00 43.58 3.06
1345 2050 3.065655 GCATCATAGAGCAAGGCACTAG 58.934 50.000 2.17 0.00 38.49 2.57
1354 2059 1.202568 CCGACCAAGCATCATAGAGCA 60.203 52.381 0.00 0.00 0.00 4.26
1389 2095 1.061424 TGGCTAAGGATCTCCCCATCA 60.061 52.381 0.00 0.00 36.42 3.07
1479 2185 2.102252 TGCCAAAATTTCCTGACCACAC 59.898 45.455 0.00 0.00 0.00 3.82
1701 2414 1.032014 TGCTTTCTGAACAACCTGCC 58.968 50.000 0.00 0.00 0.00 4.85
1844 2557 7.973388 GCATGCAATGGTAAAAATCAGTAGTTA 59.027 33.333 14.21 0.00 46.86 2.24
1884 2597 3.998341 TGGTAACTAACGAACAGGCATTC 59.002 43.478 0.00 0.00 37.61 2.67
2191 5562 1.561643 TAAGTCAGCCCTCAGACAGG 58.438 55.000 0.00 0.00 43.01 4.00
2250 5626 7.232737 AGGCTAAAACTTTTGCTTAAGTACCAT 59.767 33.333 4.02 0.00 37.37 3.55
2318 5696 9.768662 ACGTAAGAAGGAATTACTAGAAAAACA 57.231 29.630 0.00 0.00 43.62 2.83
2380 5758 6.403333 TCAGTACGTGATAATTCAAACAGC 57.597 37.500 0.00 0.00 32.48 4.40
2396 5862 9.000486 TCCTATCTAATATGTCAGTTCAGTACG 58.000 37.037 0.00 0.00 0.00 3.67
2562 6038 2.573609 ATACTGCGACCCGAACCTGC 62.574 60.000 0.00 0.00 0.00 4.85
2917 6404 3.545078 CGTGTCGCAGTAATAACAGGTAC 59.455 47.826 0.00 0.00 0.00 3.34
3034 6523 0.109342 ACCTGTCAGGACTTTGCCAG 59.891 55.000 26.18 0.00 37.67 4.85
3094 6592 1.691976 CGGCAAGGTATCCTCCATGTA 59.308 52.381 0.00 0.00 30.89 2.29
3095 6593 0.469917 CGGCAAGGTATCCTCCATGT 59.530 55.000 0.00 0.00 30.89 3.21
3096 6594 0.250467 CCGGCAAGGTATCCTCCATG 60.250 60.000 0.00 0.00 30.89 3.66
3097 6595 0.399949 TCCGGCAAGGTATCCTCCAT 60.400 55.000 0.00 0.00 41.99 3.41
3272 6815 0.614979 ACCCCTGACTACGTGCAGAT 60.615 55.000 14.11 0.00 34.06 2.90
3278 6822 2.494870 GTGTTCATACCCCTGACTACGT 59.505 50.000 0.00 0.00 0.00 3.57
3386 6947 6.070251 TCAGTGTAGCAAGGGATCAAATCTAA 60.070 38.462 0.00 0.00 0.00 2.10
3404 6965 3.715495 TCGTAAAACCGCTTTCAGTGTA 58.285 40.909 0.00 0.00 0.00 2.90
3472 7034 9.586435 TTTTCTGAATTTTCTTGTTCTTCCTTC 57.414 29.630 0.00 0.00 0.00 3.46
3625 7200 9.202273 CCGAAAATTTGAGAATTATGTGGAAAA 57.798 29.630 0.00 0.00 34.44 2.29
3917 7809 3.245122 GGTCCCTCAAGTATCCAAAACCA 60.245 47.826 0.00 0.00 0.00 3.67
3949 7841 5.970317 TGTCGTTCCTCAACTCTATACAA 57.030 39.130 0.00 0.00 0.00 2.41
3998 7992 9.726438 GATTGAGTGGGTAAGTTAAGCATATAT 57.274 33.333 0.00 0.00 0.00 0.86
3999 7993 8.710239 TGATTGAGTGGGTAAGTTAAGCATATA 58.290 33.333 0.00 0.00 0.00 0.86
4005 7999 8.454106 CAATTCTGATTGAGTGGGTAAGTTAAG 58.546 37.037 0.00 0.00 44.37 1.85
4088 8090 1.800586 CAATGTCAAGAGTGTCCCACG 59.199 52.381 0.00 0.00 39.64 4.94
4149 8152 7.054491 ACAAGATTTAACCAAAGTCTTGCAT 57.946 32.000 17.64 3.00 39.59 3.96
4230 8233 4.460263 ACACCAACTGCAATTTACAGAGA 58.540 39.130 11.34 0.00 38.55 3.10
4431 8436 4.513692 CACCTAATTTTGTGTCCTCGAACA 59.486 41.667 0.00 0.00 0.00 3.18
4753 9091 8.070171 ACGAATTTCACATCTTAAGTTCACAAG 58.930 33.333 1.63 0.00 0.00 3.16
4803 9142 6.491403 GTGAGGCCTCCATCATAAATATGTTT 59.509 38.462 29.95 0.00 35.26 2.83
4819 9166 8.732746 TTTTTACATTTATAGAGTGAGGCCTC 57.267 34.615 26.78 26.78 0.00 4.70
4880 9227 6.549912 TTAATCCATGATTCAGAGAATGCG 57.450 37.500 0.00 0.00 33.95 4.73
4894 9244 4.711355 AGGACCAAACCACATTAATCCATG 59.289 41.667 0.00 0.00 0.00 3.66
5088 9451 3.319122 AGGCAGGAAAAGAATGAACACAC 59.681 43.478 0.00 0.00 0.00 3.82
5219 9598 8.325282 GGCCGATTTAGTTTTGCATTAAATTAC 58.675 33.333 0.00 0.00 29.67 1.89
5345 9746 4.036734 GCAAGAACAAGAAGATTGTGTCCA 59.963 41.667 0.00 0.00 32.22 4.02
5375 9776 4.504864 CCCAGTTGAACATACTCACCAAGA 60.505 45.833 0.00 0.00 0.00 3.02
5654 10059 3.052036 GCAATCTTTGTGTTGTCGCATT 58.948 40.909 0.00 0.00 33.92 3.56
5815 10220 7.684187 GCATGCTAAATGGCAAAGGTTCTATAA 60.684 37.037 11.37 0.00 45.68 0.98
6016 10469 8.292448 GTGTTTGACATTGAGTTACTGAATGAT 58.708 33.333 26.33 13.38 37.27 2.45
6017 10470 7.498900 AGTGTTTGACATTGAGTTACTGAATGA 59.501 33.333 26.33 6.69 37.27 2.57
6076 10533 6.092670 GCCGCAGATCATTATACATTGTGTAT 59.907 38.462 7.64 7.64 44.89 2.29
6408 10870 8.602472 AGGCATTTTGTACCCTCATTTATTTA 57.398 30.769 0.00 0.00 0.00 1.40
6446 10916 6.534475 AATATGCAAATTCTTCCTTCAGCA 57.466 33.333 0.00 0.00 35.03 4.41
7009 11490 9.710900 CTGGCAGTGTGAATGAATATTAGTATA 57.289 33.333 6.28 0.00 0.00 1.47
7010 11491 8.213679 ACTGGCAGTGTGAATGAATATTAGTAT 58.786 33.333 21.37 0.00 0.00 2.12
7011 11492 7.564793 ACTGGCAGTGTGAATGAATATTAGTA 58.435 34.615 21.37 0.00 0.00 1.82
7012 11493 6.418101 ACTGGCAGTGTGAATGAATATTAGT 58.582 36.000 21.37 0.00 0.00 2.24
7013 11494 6.932356 ACTGGCAGTGTGAATGAATATTAG 57.068 37.500 21.37 0.00 0.00 1.73
7014 11495 8.800370 TTTACTGGCAGTGTGAATGAATATTA 57.200 30.769 29.65 1.33 0.00 0.98
7015 11496 7.701539 TTTACTGGCAGTGTGAATGAATATT 57.298 32.000 29.65 0.00 0.00 1.28
7016 11497 7.629222 GCTTTTACTGGCAGTGTGAATGAATAT 60.629 37.037 29.65 0.24 0.00 1.28
7023 11504 2.649190 TGCTTTTACTGGCAGTGTGAA 58.351 42.857 29.65 17.67 34.22 3.18
7095 11576 2.510928 ACAGCCTAGGTTCTAGACGT 57.489 50.000 11.31 0.00 0.00 4.34
7096 11577 3.543665 AGTACAGCCTAGGTTCTAGACG 58.456 50.000 11.31 0.00 0.00 4.18
7104 11585 2.644060 AAAGGGAGTACAGCCTAGGT 57.356 50.000 11.31 0.00 0.00 3.08
7116 11597 5.407387 CACATGCTTCAAAATGAAAAGGGAG 59.593 40.000 0.00 0.00 35.73 4.30
7161 11644 5.722021 ATTACGGGAAGAAAGTTTGCAAT 57.278 34.783 0.00 0.00 0.00 3.56
7162 11645 5.523438 AATTACGGGAAGAAAGTTTGCAA 57.477 34.783 0.00 0.00 0.00 4.08
7166 11649 7.989416 TGTCATAATTACGGGAAGAAAGTTT 57.011 32.000 0.00 0.00 0.00 2.66
7211 11790 6.124316 TGCGGGAGATATACTACTAGTTCT 57.876 41.667 0.00 0.00 0.00 3.01
7212 11791 6.814506 TTGCGGGAGATATACTACTAGTTC 57.185 41.667 0.00 0.00 0.00 3.01
7213 11792 7.592885 TTTTGCGGGAGATATACTACTAGTT 57.407 36.000 0.00 0.00 0.00 2.24
7214 11793 7.504911 TCTTTTTGCGGGAGATATACTACTAGT 59.495 37.037 0.00 0.00 0.00 2.57
7215 11794 7.883217 TCTTTTTGCGGGAGATATACTACTAG 58.117 38.462 0.00 0.00 0.00 2.57
7216 11795 7.828508 TCTTTTTGCGGGAGATATACTACTA 57.171 36.000 0.00 0.00 0.00 1.82
7217 11796 6.726490 TCTTTTTGCGGGAGATATACTACT 57.274 37.500 0.00 0.00 0.00 2.57
7218 11797 7.709613 TCTTTCTTTTTGCGGGAGATATACTAC 59.290 37.037 0.00 0.00 0.00 2.73
7219 11798 7.788026 TCTTTCTTTTTGCGGGAGATATACTA 58.212 34.615 0.00 0.00 0.00 1.82
7220 11799 6.650120 TCTTTCTTTTTGCGGGAGATATACT 58.350 36.000 0.00 0.00 0.00 2.12
7221 11800 6.920569 TCTTTCTTTTTGCGGGAGATATAC 57.079 37.500 0.00 0.00 0.00 1.47
7222 11801 7.827236 TCTTTCTTTCTTTTTGCGGGAGATATA 59.173 33.333 0.00 0.00 0.00 0.86
7223 11802 6.659242 TCTTTCTTTCTTTTTGCGGGAGATAT 59.341 34.615 0.00 0.00 0.00 1.63
7224 11803 6.001460 TCTTTCTTTCTTTTTGCGGGAGATA 58.999 36.000 0.00 0.00 0.00 1.98
7225 11804 4.827284 TCTTTCTTTCTTTTTGCGGGAGAT 59.173 37.500 0.00 0.00 0.00 2.75
7226 11805 4.204012 TCTTTCTTTCTTTTTGCGGGAGA 58.796 39.130 0.00 0.00 0.00 3.71
7227 11806 4.568152 TCTTTCTTTCTTTTTGCGGGAG 57.432 40.909 0.00 0.00 0.00 4.30
7228 11807 4.993029 TTCTTTCTTTCTTTTTGCGGGA 57.007 36.364 0.00 0.00 0.00 5.14
7229 11808 5.810074 TCTTTTCTTTCTTTCTTTTTGCGGG 59.190 36.000 0.00 0.00 0.00 6.13
7230 11809 6.885735 TCTTTTCTTTCTTTCTTTTTGCGG 57.114 33.333 0.00 0.00 0.00 5.69
7231 11810 7.953393 AGTTCTTTTCTTTCTTTCTTTTTGCG 58.047 30.769 0.00 0.00 0.00 4.85
7325 11906 3.561725 GGATCTTCAAATCTACCGGCAAG 59.438 47.826 0.00 0.00 0.00 4.01
7702 12297 8.726988 TCTATTTGGATCTTCAAACTTTAACGG 58.273 33.333 0.00 0.00 39.13 4.44
7727 12454 7.676393 ACGAAGTTCAAGAATTCGACATATTC 58.324 34.615 22.07 0.86 46.57 1.75
7762 12492 6.116126 AGAGCTAGTTTATCAACACCATTCC 58.884 40.000 0.00 0.00 35.05 3.01
7767 12497 6.875076 TCCTAAGAGCTAGTTTATCAACACC 58.125 40.000 0.00 0.00 35.05 4.16
7852 12582 0.752658 AAACAAGAAAGCTGGGTGCC 59.247 50.000 0.00 0.00 44.23 5.01
7946 13091 8.221766 CGAAACAGACAGAATAAAACCTCTAAC 58.778 37.037 0.00 0.00 0.00 2.34
7950 13095 5.179555 AGCGAAACAGACAGAATAAAACCTC 59.820 40.000 0.00 0.00 0.00 3.85
7964 13109 2.037144 GGGGGATACTAGCGAAACAGA 58.963 52.381 0.00 0.00 0.00 3.41
8407 13562 3.435105 AGAACAGCTCGAGATAGCAAG 57.565 47.619 18.75 0.00 45.30 4.01
8471 13629 0.456995 CGTCAAAGAGGAGCGAGACC 60.457 60.000 0.00 0.00 0.00 3.85
8482 13640 1.065491 CACATCCCCATCCGTCAAAGA 60.065 52.381 0.00 0.00 0.00 2.52
8493 13651 1.125093 AAGACGTGGACACATCCCCA 61.125 55.000 0.00 0.00 45.59 4.96
8699 13864 6.980051 ATATTTATACGGGAATTTCGCTCC 57.020 37.500 11.18 0.00 0.00 4.70
8774 14115 6.978338 AGTTTAACTCATAGACTTCGACACA 58.022 36.000 0.00 0.00 0.00 3.72
8780 14121 5.805994 CACCCGAGTTTAACTCATAGACTTC 59.194 44.000 22.70 0.00 45.30 3.01
8818 14159 8.717821 GCATACTTCATTGACTTGTACTTTACA 58.282 33.333 0.00 0.00 36.79 2.41
8893 14234 2.486203 TGTGCGCTGATTAAAACGGAAT 59.514 40.909 9.73 0.00 0.00 3.01
8899 14240 6.198687 GCTTGTATATGTGCGCTGATTAAAA 58.801 36.000 9.73 0.00 0.00 1.52
9037 14623 2.024941 ACTGGGGACTCCATTCAATTCC 60.025 50.000 0.00 0.00 46.01 3.01
9055 14641 1.280133 ACCTCATGGTGATGGTGACTG 59.720 52.381 0.00 0.00 46.51 3.51
9073 14659 4.510571 TGGCTCCTCTTAAATTCGTTACC 58.489 43.478 0.00 0.00 0.00 2.85
9201 14790 2.186903 CTCGTTGGCCGTGGCTAT 59.813 61.111 11.25 0.00 41.60 2.97
9217 14806 4.558697 GCGGTCAAACTTATTCCTTTTGCT 60.559 41.667 0.00 0.00 31.52 3.91
9296 14889 2.278596 CGGTATCTCCCGTGCGTG 60.279 66.667 0.00 0.00 43.07 5.34
9303 14896 0.677842 ATTACACGGCGGTATCTCCC 59.322 55.000 13.24 0.00 0.00 4.30
9304 14897 1.779569 CATTACACGGCGGTATCTCC 58.220 55.000 13.24 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.