Multiple sequence alignment - TraesCS3D01G148600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G148600 chr3D 100.000 6089 0 0 1 6089 113796989 113803077 0.000000e+00 11245
1 TraesCS3D01G148600 chr3A 96.007 3055 97 13 2424 5462 109150959 109154004 0.000000e+00 4942
2 TraesCS3D01G148600 chr3A 94.613 2376 67 26 1 2355 109148392 109150727 0.000000e+00 3622
3 TraesCS3D01G148600 chr3A 94.234 555 27 3 5540 6089 109154005 109154559 0.000000e+00 843
4 TraesCS3D01G148600 chr3A 94.595 74 3 1 2353 2425 109150792 109150865 4.990000e-21 113
5 TraesCS3D01G148600 chr3B 89.372 2945 226 41 2592 5464 167246336 167243407 0.000000e+00 3624
6 TraesCS3D01G148600 chr3B 92.496 2119 118 20 500 2592 167248538 167246435 0.000000e+00 2994
7 TraesCS3D01G148600 chr3B 92.690 342 21 3 5744 6085 167243249 167242912 1.970000e-134 490
8 TraesCS3D01G148600 chr3B 83.333 162 8 6 5552 5707 167243397 167243249 1.380000e-26 132
9 TraesCS3D01G148600 chr3B 94.203 69 4 0 1 69 167249402 167249334 8.350000e-19 106
10 TraesCS3D01G148600 chr1B 93.617 94 4 2 5458 5550 543504307 543504399 8.230000e-29 139
11 TraesCS3D01G148600 chr5A 94.186 86 4 1 5459 5543 622203851 622203936 4.950000e-26 130
12 TraesCS3D01G148600 chr7A 94.118 85 4 1 5460 5543 645281493 645281409 1.780000e-25 128
13 TraesCS3D01G148600 chr6D 94.118 85 4 1 5460 5543 48464587 48464503 1.780000e-25 128
14 TraesCS3D01G148600 chrUn 93.103 87 5 1 5460 5546 332188974 332189059 6.410000e-25 126
15 TraesCS3D01G148600 chr7B 93.103 87 5 1 5460 5546 725606133 725606048 6.410000e-25 126
16 TraesCS3D01G148600 chr7B 93.103 87 5 1 5460 5546 725641728 725641643 6.410000e-25 126
17 TraesCS3D01G148600 chr5D 93.103 87 5 1 5458 5543 264635047 264634961 6.410000e-25 126
18 TraesCS3D01G148600 chr2D 93.023 86 5 1 5460 5544 119819535 119819450 2.300000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G148600 chr3D 113796989 113803077 6088 False 11245.0 11245 100.00000 1 6089 1 chr3D.!!$F1 6088
1 TraesCS3D01G148600 chr3A 109148392 109154559 6167 False 2380.0 4942 94.86225 1 6089 4 chr3A.!!$F1 6088
2 TraesCS3D01G148600 chr3B 167242912 167249402 6490 True 1469.2 3624 90.41880 1 6085 5 chr3B.!!$R1 6084

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 147 0.808755 AAACTAATCTTTGCGGCGGG 59.191 50.000 9.78 0.0 0.00 6.13 F
145 148 1.029947 AACTAATCTTTGCGGCGGGG 61.030 55.000 9.78 0.0 0.00 5.73 F
1441 2067 2.284190 GCACCTCAACTATTCTCAGCC 58.716 52.381 0.00 0.0 0.00 4.85 F
1503 2130 2.549064 TGGACAACACTGACATGAGG 57.451 50.000 0.00 0.0 0.00 3.86 F
2478 3275 2.806434 TGGCTTAAGGTGCATGTTCAT 58.194 42.857 4.29 0.0 0.00 2.57 F
3628 4534 0.443869 CGCTCGATCAACACTTTGGG 59.556 55.000 0.00 0.0 33.06 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1486 2113 1.802960 CAGCCTCATGTCAGTGTTGTC 59.197 52.381 0.00 0.0 0.00 3.18 R
1812 2439 3.904717 TCATACTTGGAGAGGAGAGGAC 58.095 50.000 0.00 0.0 0.00 3.85 R
2427 3221 0.179062 GAGCCAGGACATGCTAGTGG 60.179 60.000 0.00 0.0 38.11 4.00 R
3345 4249 0.999406 CTGGACGTGCGGAATGTAAG 59.001 55.000 10.88 0.0 0.00 2.34 R
3863 4769 0.179065 TCATGCTCATCTGCCTTCCG 60.179 55.000 0.00 0.0 0.00 4.30 R
5574 6556 1.206072 GCAGTCTCAAAGCGCACAG 59.794 57.895 11.47 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.931441 AGCTCACTTCATGTTGTTACTTC 57.069 39.130 0.00 0.00 0.00 3.01
96 97 2.431454 GCTAAGCAGCCAAAGAGAAGT 58.569 47.619 0.00 0.00 42.37 3.01
99 100 4.637977 GCTAAGCAGCCAAAGAGAAGTATT 59.362 41.667 0.00 0.00 42.37 1.89
100 101 5.817816 GCTAAGCAGCCAAAGAGAAGTATTA 59.182 40.000 0.00 0.00 42.37 0.98
102 103 7.012799 GCTAAGCAGCCAAAGAGAAGTATTATT 59.987 37.037 0.00 0.00 42.37 1.40
103 104 9.547753 CTAAGCAGCCAAAGAGAAGTATTATTA 57.452 33.333 0.00 0.00 0.00 0.98
144 147 0.808755 AAACTAATCTTTGCGGCGGG 59.191 50.000 9.78 0.00 0.00 6.13
145 148 1.029947 AACTAATCTTTGCGGCGGGG 61.030 55.000 9.78 0.00 0.00 5.73
166 169 6.374053 CGGGGCAAGATTTTAATTTTCCAATT 59.626 34.615 0.00 0.00 36.52 2.32
195 198 3.945285 GGACCCTTGCGAGAAATTAATCA 59.055 43.478 1.22 0.00 0.00 2.57
203 206 8.961092 CCTTGCGAGAAATTAATCATAACAATG 58.039 33.333 1.22 0.00 0.00 2.82
270 274 5.022787 AGGCCAGTAAAATGCTTCCAATTA 58.977 37.500 5.01 0.00 0.00 1.40
298 893 2.959707 CGGCAAGATTAGTACTCCCTCT 59.040 50.000 0.00 0.00 0.00 3.69
300 895 3.707102 GGCAAGATTAGTACTCCCTCTGT 59.293 47.826 0.00 0.00 0.00 3.41
317 912 5.506317 CCCTCTGTTCCGAATTAAATGATGC 60.506 44.000 0.00 0.00 0.00 3.91
318 913 5.066375 CCTCTGTTCCGAATTAAATGATGCA 59.934 40.000 0.00 0.00 0.00 3.96
319 914 6.404623 CCTCTGTTCCGAATTAAATGATGCAA 60.405 38.462 0.00 0.00 0.00 4.08
320 915 7.099266 TCTGTTCCGAATTAAATGATGCAAT 57.901 32.000 0.00 0.00 0.00 3.56
321 916 7.195646 TCTGTTCCGAATTAAATGATGCAATC 58.804 34.615 0.00 0.00 45.83 2.67
322 917 6.272318 TGTTCCGAATTAAATGATGCAATCC 58.728 36.000 0.00 0.00 44.73 3.01
323 918 5.452078 TCCGAATTAAATGATGCAATCCC 57.548 39.130 0.00 0.00 44.73 3.85
324 919 5.139727 TCCGAATTAAATGATGCAATCCCT 58.860 37.500 0.00 0.00 44.73 4.20
325 920 6.303054 TCCGAATTAAATGATGCAATCCCTA 58.697 36.000 0.00 0.00 44.73 3.53
326 921 6.947733 TCCGAATTAAATGATGCAATCCCTAT 59.052 34.615 0.00 0.00 44.73 2.57
327 922 8.106462 TCCGAATTAAATGATGCAATCCCTATA 58.894 33.333 0.00 0.00 44.73 1.31
328 923 8.184192 CCGAATTAAATGATGCAATCCCTATAC 58.816 37.037 0.00 0.00 44.73 1.47
329 924 8.729756 CGAATTAAATGATGCAATCCCTATACA 58.270 33.333 0.00 0.00 44.73 2.29
337 932 8.995027 TGATGCAATCCCTATACAATTTTAGT 57.005 30.769 0.00 0.00 44.73 2.24
439 1039 7.287050 AGCGTATTCTTTTTACGGACTAAAG 57.713 36.000 5.52 0.00 41.99 1.85
465 1073 3.066900 CACTTCACTACTATGGAGTCCCG 59.933 52.174 6.74 0.00 36.18 5.14
673 1284 3.886505 CACCAAAACAGTTACAGCCCTTA 59.113 43.478 0.00 0.00 0.00 2.69
689 1300 3.244457 GCCCTTAATAGCGAACCTACCAT 60.244 47.826 0.00 0.00 0.00 3.55
703 1314 4.843728 ACCTACCATAACCATGAACAGTG 58.156 43.478 0.00 0.00 33.67 3.66
723 1334 2.682856 TGAACTCAGACCACTTGTTTGC 59.317 45.455 0.00 0.00 0.00 3.68
733 1344 6.418819 CAGACCACTTGTTTGCTTATTTTCAG 59.581 38.462 0.00 0.00 0.00 3.02
804 1418 3.594603 TCAAGGATCTCACTTCCGTTC 57.405 47.619 0.00 0.00 38.36 3.95
956 1572 4.487714 TCCAAATAGCCTGTAGGAACTG 57.512 45.455 1.17 0.00 41.52 3.16
1035 1651 3.366679 GCAACATCTTCCACAATGACCTG 60.367 47.826 0.00 0.00 0.00 4.00
1124 1740 4.026310 CGATTCCCGTTACAGGTAAAATCG 60.026 45.833 16.06 16.06 38.56 3.34
1127 1743 2.743126 CCCGTTACAGGTAAAATCGCAA 59.257 45.455 0.00 0.00 0.00 4.85
1167 1793 6.899771 CGCATTATGTGTACACAAATACAGTC 59.100 38.462 31.01 14.46 45.41 3.51
1279 1905 4.044336 AGCATTTCTGAGACATCTCTCG 57.956 45.455 10.18 2.18 45.53 4.04
1334 1960 6.925610 ACAGCTTCTTCGCAATTGATATTA 57.074 33.333 10.34 0.00 0.00 0.98
1439 2065 4.573900 ACTTGCACCTCAACTATTCTCAG 58.426 43.478 0.00 0.00 0.00 3.35
1441 2067 2.284190 GCACCTCAACTATTCTCAGCC 58.716 52.381 0.00 0.00 0.00 4.85
1486 2113 3.383620 TGTGCAAAGCTACCAATTTGG 57.616 42.857 14.02 14.02 45.02 3.28
1503 2130 2.549064 TGGACAACACTGACATGAGG 57.451 50.000 0.00 0.00 0.00 3.86
2053 2684 7.254898 CGATATGTGACAGCAATTTATTGGTCT 60.255 37.037 4.30 0.00 45.69 3.85
2155 2786 4.196193 TGCTATTTAACCTGGGATTGACG 58.804 43.478 0.00 0.00 0.00 4.35
2245 2876 6.708285 ACGTACTCTTCCAAATACCTTTCAT 58.292 36.000 0.00 0.00 0.00 2.57
2304 2935 4.207165 GCCTGGCTTTACATAAGGATTGA 58.793 43.478 12.43 0.00 0.00 2.57
2332 2963 7.761038 AAGAAACGGAAATGGAAGTAAGAAT 57.239 32.000 0.00 0.00 0.00 2.40
2346 2977 7.173218 TGGAAGTAAGAATCATGTGAACTTGTC 59.827 37.037 12.61 8.81 0.00 3.18
2376 3074 8.978472 ACCGTAATACATATGCACCTTATAGAT 58.022 33.333 1.58 0.00 0.00 1.98
2427 3221 6.922247 ATCACAGCATGCTTATAGATATGC 57.078 37.500 19.98 0.00 44.63 3.14
2478 3275 2.806434 TGGCTTAAGGTGCATGTTCAT 58.194 42.857 4.29 0.00 0.00 2.57
2936 3835 8.818141 AAATAGTGTACACTGGAATATCATCG 57.182 34.615 33.77 0.00 42.52 3.84
3015 3914 5.648247 AGTACTACCCACCAAGAGAAACTA 58.352 41.667 0.00 0.00 0.00 2.24
3187 4086 5.997746 GGAAGAACGGATAATGATTGATGGA 59.002 40.000 0.00 0.00 0.00 3.41
3345 4249 1.880819 CTGCAACATTCCCCAGCCAC 61.881 60.000 0.00 0.00 0.00 5.01
3628 4534 0.443869 CGCTCGATCAACACTTTGGG 59.556 55.000 0.00 0.00 33.06 4.12
3685 4591 7.946237 GTCAACATAAACAATGAATCAAAAGCG 59.054 33.333 0.00 0.00 39.07 4.68
3720 4626 1.311859 CTGGCTTGCAGTGAAGAACA 58.688 50.000 0.00 0.00 0.00 3.18
3733 4639 7.497579 TGCAGTGAAGAACATTGTAAAGAACTA 59.502 33.333 0.00 0.00 38.28 2.24
3755 4661 7.397221 ACTAAATGAATCAGACAGACATGGAA 58.603 34.615 0.00 0.00 0.00 3.53
3863 4769 5.163982 GCTACAAGTCAGATTACGGACAAAC 60.164 44.000 0.00 0.00 42.12 2.93
3942 4848 3.433740 GGGGCTCGAGATAGGTTCAAAAT 60.434 47.826 18.75 0.00 0.00 1.82
3949 4855 7.623089 GCTCGAGATAGGTTCAAAATCATATGC 60.623 40.741 18.75 0.00 0.00 3.14
3950 4856 7.216494 TCGAGATAGGTTCAAAATCATATGCA 58.784 34.615 0.00 0.00 0.00 3.96
3971 4877 5.244851 TGCAAAAACACAATATTAGGGCAGA 59.755 36.000 0.00 0.00 0.00 4.26
4037 4943 4.813809 ACTCCAGGAGATCACTGATACAT 58.186 43.478 24.45 0.00 38.20 2.29
4223 5129 6.043327 TGCATGATTAAGAATTAACGTCCG 57.957 37.500 0.00 0.00 44.35 4.79
4400 5306 2.216046 CGGGATCATGACCAGAACATG 58.784 52.381 13.95 0.00 44.20 3.21
4401 5307 2.420547 CGGGATCATGACCAGAACATGT 60.421 50.000 13.95 0.00 43.56 3.21
4406 5323 3.402110 TCATGACCAGAACATGTCACAC 58.598 45.455 0.00 0.00 43.69 3.82
4408 5325 2.837498 TGACCAGAACATGTCACACTG 58.163 47.619 0.00 7.03 36.62 3.66
4602 5541 1.636769 GCCCAGGCCCTAGCTAACTT 61.637 60.000 0.00 0.00 39.73 2.66
4731 5670 9.778993 CATCATACATGAATATTTTCCGGATTC 57.221 33.333 4.15 6.36 40.69 2.52
4737 5676 7.122650 ACATGAATATTTTCCGGATTCAGTTGT 59.877 33.333 19.23 16.53 41.53 3.32
4909 5857 2.004583 CCAGAAACCAGCATTGCATG 57.995 50.000 11.91 6.29 0.00 4.06
5000 5951 4.202377 TGAGAAGTTTCCGGGTTATTGTCA 60.202 41.667 0.00 3.91 0.00 3.58
5183 6142 4.500499 AGTTGCCTAGATCTCAGCAAAT 57.500 40.909 25.63 23.10 45.95 2.32
5192 6151 4.892433 AGATCTCAGCAAATAGGAATCGG 58.108 43.478 0.00 0.00 0.00 4.18
5209 6168 2.165301 GGGCGACTCGGTGAAATCG 61.165 63.158 0.00 0.00 37.63 3.34
5225 6184 4.037327 TGAAATCGTGAAGAAAATGCCACA 59.963 37.500 0.00 0.00 0.00 4.17
5338 6311 2.110578 GATCAAATGTTTGGGGAGGGG 58.889 52.381 5.71 0.00 38.66 4.79
5360 6333 0.811616 ACCTCCGCTGAATTGATCGC 60.812 55.000 0.00 0.00 0.00 4.58
5361 6334 1.502163 CCTCCGCTGAATTGATCGCC 61.502 60.000 0.00 0.00 0.00 5.54
5378 6351 3.791320 TCGCCCTAGGGAAGAATATCAT 58.209 45.455 33.21 0.00 37.50 2.45
5381 6354 5.783360 TCGCCCTAGGGAAGAATATCATTTA 59.217 40.000 33.21 1.39 37.50 1.40
5410 6383 9.533253 GGCAACAAATATTAGCAATATTGAACT 57.467 29.630 19.73 9.88 41.86 3.01
5424 6397 7.063780 GCAATATTGAACTTTTCACCAAGGATG 59.936 37.037 19.73 0.00 39.87 3.51
5429 6402 5.763204 TGAACTTTTCACCAAGGATGACTAC 59.237 40.000 0.00 0.00 34.08 2.73
5465 6443 9.692749 TTGATGATCGACATAAATTCTACTACC 57.307 33.333 0.00 0.00 39.56 3.18
5466 6444 9.078990 TGATGATCGACATAAATTCTACTACCT 57.921 33.333 0.00 0.00 39.56 3.08
5468 6446 8.693120 TGATCGACATAAATTCTACTACCTCT 57.307 34.615 0.00 0.00 0.00 3.69
5469 6447 8.568794 TGATCGACATAAATTCTACTACCTCTG 58.431 37.037 0.00 0.00 0.00 3.35
5470 6448 7.876936 TCGACATAAATTCTACTACCTCTGT 57.123 36.000 0.00 0.00 0.00 3.41
5471 6449 8.969260 TCGACATAAATTCTACTACCTCTGTA 57.031 34.615 0.00 0.00 0.00 2.74
5472 6450 8.834465 TCGACATAAATTCTACTACCTCTGTAC 58.166 37.037 0.00 0.00 0.00 2.90
5473 6451 8.074972 CGACATAAATTCTACTACCTCTGTACC 58.925 40.741 0.00 0.00 0.00 3.34
5474 6452 7.938715 ACATAAATTCTACTACCTCTGTACCG 58.061 38.462 0.00 0.00 0.00 4.02
5475 6453 7.776969 ACATAAATTCTACTACCTCTGTACCGA 59.223 37.037 0.00 0.00 0.00 4.69
5476 6454 8.627403 CATAAATTCTACTACCTCTGTACCGAA 58.373 37.037 0.00 0.00 0.00 4.30
5477 6455 7.472334 AAATTCTACTACCTCTGTACCGAAA 57.528 36.000 0.00 0.00 0.00 3.46
5478 6456 7.657023 AATTCTACTACCTCTGTACCGAAAT 57.343 36.000 0.00 0.00 0.00 2.17
5479 6457 8.757982 AATTCTACTACCTCTGTACCGAAATA 57.242 34.615 0.00 0.00 0.00 1.40
5480 6458 7.559590 TTCTACTACCTCTGTACCGAAATAC 57.440 40.000 0.00 0.00 0.00 1.89
5481 6459 6.893583 TCTACTACCTCTGTACCGAAATACT 58.106 40.000 0.00 0.00 0.00 2.12
5482 6460 7.341805 TCTACTACCTCTGTACCGAAATACTT 58.658 38.462 0.00 0.00 0.00 2.24
5483 6461 6.205101 ACTACCTCTGTACCGAAATACTTG 57.795 41.667 0.00 0.00 0.00 3.16
5484 6462 5.713861 ACTACCTCTGTACCGAAATACTTGT 59.286 40.000 0.00 0.00 0.00 3.16
5485 6463 6.886459 ACTACCTCTGTACCGAAATACTTGTA 59.114 38.462 0.00 0.00 0.00 2.41
5486 6464 6.205101 ACCTCTGTACCGAAATACTTGTAG 57.795 41.667 0.00 0.00 0.00 2.74
5487 6465 5.713861 ACCTCTGTACCGAAATACTTGTAGT 59.286 40.000 0.00 0.00 0.00 2.73
5488 6466 6.210185 ACCTCTGTACCGAAATACTTGTAGTT 59.790 38.462 0.00 0.00 0.00 2.24
5489 6467 6.530534 CCTCTGTACCGAAATACTTGTAGTTG 59.469 42.308 0.00 0.00 0.00 3.16
5490 6468 6.392354 TCTGTACCGAAATACTTGTAGTTGG 58.608 40.000 0.00 3.87 0.00 3.77
5491 6469 5.481105 TGTACCGAAATACTTGTAGTTGGG 58.519 41.667 16.40 16.40 0.00 4.12
5492 6470 3.946606 ACCGAAATACTTGTAGTTGGGG 58.053 45.455 20.08 13.17 29.20 4.96
5493 6471 3.275999 CCGAAATACTTGTAGTTGGGGG 58.724 50.000 12.11 2.55 0.00 5.40
5494 6472 3.054948 CCGAAATACTTGTAGTTGGGGGA 60.055 47.826 12.11 0.00 0.00 4.81
5495 6473 4.566070 CCGAAATACTTGTAGTTGGGGGAA 60.566 45.833 12.11 0.00 0.00 3.97
5496 6474 4.393990 CGAAATACTTGTAGTTGGGGGAAC 59.606 45.833 0.00 0.00 34.40 3.62
5498 6476 5.594199 AATACTTGTAGTTGGGGGAACTT 57.406 39.130 0.00 0.00 42.70 2.66
5499 6477 3.223674 ACTTGTAGTTGGGGGAACTTG 57.776 47.619 0.00 0.00 42.70 3.16
5500 6478 2.512476 ACTTGTAGTTGGGGGAACTTGT 59.488 45.455 0.00 0.00 42.70 3.16
5501 6479 3.717913 ACTTGTAGTTGGGGGAACTTGTA 59.282 43.478 0.00 0.00 42.70 2.41
5502 6480 4.352893 ACTTGTAGTTGGGGGAACTTGTAT 59.647 41.667 0.00 0.00 42.70 2.29
5503 6481 5.163023 ACTTGTAGTTGGGGGAACTTGTATT 60.163 40.000 0.00 0.00 42.70 1.89
5504 6482 6.044637 ACTTGTAGTTGGGGGAACTTGTATTA 59.955 38.462 0.00 0.00 42.70 0.98
5505 6483 6.057321 TGTAGTTGGGGGAACTTGTATTAG 57.943 41.667 0.00 0.00 42.70 1.73
5506 6484 5.548836 TGTAGTTGGGGGAACTTGTATTAGT 59.451 40.000 0.00 0.00 42.70 2.24
5507 6485 5.594199 AGTTGGGGGAACTTGTATTAGTT 57.406 39.130 0.00 0.00 42.70 2.24
5508 6486 5.960704 AGTTGGGGGAACTTGTATTAGTTT 58.039 37.500 0.00 0.00 42.70 2.66
5509 6487 6.008331 AGTTGGGGGAACTTGTATTAGTTTC 58.992 40.000 0.00 0.00 42.70 2.78
5513 6491 4.925836 GGGAACTTGTATTAGTTTCCCCA 58.074 43.478 6.45 0.00 44.78 4.96
5514 6492 5.326900 GGGAACTTGTATTAGTTTCCCCAA 58.673 41.667 6.45 0.00 44.78 4.12
5515 6493 5.184479 GGGAACTTGTATTAGTTTCCCCAAC 59.816 44.000 6.45 0.00 44.78 3.77
5516 6494 6.974858 GGGAACTTGTATTAGTTTCCCCAACT 60.975 42.308 6.45 0.00 44.78 3.16
5517 6495 7.170277 GGAACTTGTATTAGTTTCCCCAACTA 58.830 38.462 0.00 0.00 44.56 2.24
5518 6496 7.120285 GGAACTTGTATTAGTTTCCCCAACTAC 59.880 40.741 0.00 0.00 45.97 2.73
5519 6497 7.081857 ACTTGTATTAGTTTCCCCAACTACA 57.918 36.000 0.00 0.00 45.97 2.74
5520 6498 7.519927 ACTTGTATTAGTTTCCCCAACTACAA 58.480 34.615 0.00 0.00 45.97 2.41
5521 6499 8.000127 ACTTGTATTAGTTTCCCCAACTACAAA 59.000 33.333 0.00 0.00 45.97 2.83
5522 6500 8.943594 TTGTATTAGTTTCCCCAACTACAAAT 57.056 30.769 0.00 0.00 45.97 2.32
5529 6507 7.676004 AGTTTCCCCAACTACAAATATTTTGG 58.324 34.615 8.36 8.36 44.56 3.28
5530 6508 7.291416 AGTTTCCCCAACTACAAATATTTTGGT 59.709 33.333 12.65 5.94 44.56 3.67
5531 6509 8.586744 GTTTCCCCAACTACAAATATTTTGGTA 58.413 33.333 12.65 6.64 31.92 3.25
5532 6510 7.706100 TCCCCAACTACAAATATTTTGGTAC 57.294 36.000 12.65 0.00 0.00 3.34
5533 6511 7.239438 TCCCCAACTACAAATATTTTGGTACA 58.761 34.615 12.65 0.00 0.00 2.90
5534 6512 7.394923 TCCCCAACTACAAATATTTTGGTACAG 59.605 37.037 12.65 2.55 42.39 2.74
5535 6513 7.394923 CCCCAACTACAAATATTTTGGTACAGA 59.605 37.037 12.65 0.00 42.39 3.41
5536 6514 8.458843 CCCAACTACAAATATTTTGGTACAGAG 58.541 37.037 12.65 1.74 42.39 3.35
5537 6515 8.458843 CCAACTACAAATATTTTGGTACAGAGG 58.541 37.037 0.00 0.00 42.39 3.69
5538 6516 8.458843 CAACTACAAATATTTTGGTACAGAGGG 58.541 37.037 0.00 0.00 42.39 4.30
5574 6556 6.764560 TGACTCTGACCTTTTAACTGTTAACC 59.235 38.462 12.27 1.92 0.00 2.85
5703 6690 8.095169 ACTGATTACTACTTCATTTTTCTCGGT 58.905 33.333 0.00 0.00 0.00 4.69
5807 6794 8.964420 TTGCAAAACTGCTACTGTATTTAATC 57.036 30.769 0.00 0.00 35.49 1.75
5925 6912 7.377397 CACAGATCGAAATTAGCTACTGTACTC 59.623 40.741 8.53 0.00 35.95 2.59
5982 6969 4.139859 CTGAAAGGTCAGCTCATCAGAT 57.860 45.455 12.21 0.00 44.74 2.90
6055 7042 1.435515 GCTGCGACTCCAGGACTAG 59.564 63.158 0.00 0.00 33.44 2.57
6064 7051 1.613630 CCAGGACTAGGCCACCACT 60.614 63.158 19.45 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.916831 TGCTTTTATTTTGTGATGCTGTCG 59.083 37.500 0.00 0.00 0.00 4.35
80 81 8.807948 TTTAATAATACTTCTCTTTGGCTGCT 57.192 30.769 0.00 0.00 0.00 4.24
103 104 9.004231 AGTTTACACTATGAGAATAGGGGATTT 57.996 33.333 0.44 0.00 31.94 2.17
144 147 8.397906 GGCTAATTGGAAAATTAAAATCTTGCC 58.602 33.333 0.00 0.00 0.00 4.52
145 148 8.397906 GGGCTAATTGGAAAATTAAAATCTTGC 58.602 33.333 0.00 0.00 0.00 4.01
166 169 3.399181 CGCAAGGGTCCTGGGCTA 61.399 66.667 0.00 0.00 0.00 3.93
270 274 5.148651 AGTACTAATCTTGCCGTGAAGTT 57.851 39.130 0.00 0.00 0.00 2.66
298 893 6.272318 GGATTGCATCATTTAATTCGGAACA 58.728 36.000 0.00 0.00 0.00 3.18
300 895 5.598005 AGGGATTGCATCATTTAATTCGGAA 59.402 36.000 0.00 0.00 0.00 4.30
334 929 9.696572 ACTCAACCTCTATACAATGTCTTACTA 57.303 33.333 0.00 0.00 0.00 1.82
335 930 8.596781 ACTCAACCTCTATACAATGTCTTACT 57.403 34.615 0.00 0.00 0.00 2.24
336 931 8.467598 TGACTCAACCTCTATACAATGTCTTAC 58.532 37.037 0.00 0.00 0.00 2.34
337 932 8.589701 TGACTCAACCTCTATACAATGTCTTA 57.410 34.615 0.00 0.00 0.00 2.10
338 933 7.482169 TGACTCAACCTCTATACAATGTCTT 57.518 36.000 0.00 0.00 0.00 3.01
339 934 7.482169 TTGACTCAACCTCTATACAATGTCT 57.518 36.000 0.00 0.00 0.00 3.41
340 935 8.723942 AATTGACTCAACCTCTATACAATGTC 57.276 34.615 0.00 0.00 0.00 3.06
358 953 4.412199 TCCCTCCGATCCAATTAATTGACT 59.588 41.667 26.32 14.28 40.14 3.41
359 954 4.714632 TCCCTCCGATCCAATTAATTGAC 58.285 43.478 26.32 16.28 40.14 3.18
439 1039 6.100668 GGACTCCATAGTAGTGAAGTGAAAC 58.899 44.000 0.00 0.00 35.56 2.78
465 1073 3.694566 CCCATTAACTTTGTCTGTAGGGC 59.305 47.826 0.00 0.00 0.00 5.19
545 1153 9.918630 ACAAATTGCAGAATTATAGGCATAATC 57.081 29.630 0.00 0.00 36.51 1.75
583 1193 7.686859 GCAGTCCTTTGGGAAGTATTTCTTTTT 60.687 37.037 0.00 0.00 44.15 1.94
597 1207 1.068333 CGATGTTTGCAGTCCTTTGGG 60.068 52.381 0.00 0.00 0.00 4.12
673 1284 5.071250 TCATGGTTATGGTAGGTTCGCTATT 59.929 40.000 0.00 0.00 34.97 1.73
689 1300 5.297547 GTCTGAGTTCACTGTTCATGGTTA 58.702 41.667 0.00 0.00 0.00 2.85
703 1314 2.945668 AGCAAACAAGTGGTCTGAGTTC 59.054 45.455 0.00 0.00 0.00 3.01
804 1418 3.779738 AGAAAGAAGAGGATGGAGGAAGG 59.220 47.826 0.00 0.00 0.00 3.46
956 1572 2.351544 GGCGTATCTTACTGTCGATCCC 60.352 54.545 0.00 0.00 0.00 3.85
1101 1717 4.026310 CGATTTTACCTGTAACGGGAATCG 60.026 45.833 14.84 14.84 45.88 3.34
1124 1740 4.928661 TGCGAGAGAAAGTAAAGATTGC 57.071 40.909 0.00 0.00 0.00 3.56
1127 1743 7.766278 ACACATAATGCGAGAGAAAGTAAAGAT 59.234 33.333 0.00 0.00 0.00 2.40
1439 2065 5.125417 TGCTTTACCATTAAGAATGACAGGC 59.875 40.000 0.70 0.00 41.46 4.85
1441 2067 7.144722 TGTGCTTTACCATTAAGAATGACAG 57.855 36.000 0.70 0.00 41.46 3.51
1478 2105 4.037803 TCATGTCAGTGTTGTCCAAATTGG 59.962 41.667 5.48 5.48 39.43 3.16
1486 2113 1.802960 CAGCCTCATGTCAGTGTTGTC 59.197 52.381 0.00 0.00 0.00 3.18
1503 2130 5.534654 AGGAAGAGAGATATCTGTGTACAGC 59.465 44.000 10.74 0.00 43.46 4.40
1712 2339 6.319405 GGGGCGATTTACCTTAGTAATTTTCA 59.681 38.462 0.00 0.00 38.26 2.69
1812 2439 3.904717 TCATACTTGGAGAGGAGAGGAC 58.095 50.000 0.00 0.00 0.00 3.85
2053 2684 6.116806 ACCAGTTGTTGTGAGTGTTGTAATA 58.883 36.000 0.00 0.00 0.00 0.98
2185 2816 1.179174 GGCAACTTCCCTGGACAACC 61.179 60.000 0.00 0.00 0.00 3.77
2245 2876 7.980662 ACAATCACAGAATGACAAAACAAATCA 59.019 29.630 0.00 0.00 41.24 2.57
2304 2935 9.292195 TCTTACTTCCATTTCCGTTTCTTATTT 57.708 29.630 0.00 0.00 0.00 1.40
2332 2963 3.069016 ACGGTACAGACAAGTTCACATGA 59.931 43.478 0.00 0.00 0.00 3.07
2346 2977 5.779922 AGGTGCATATGTATTACGGTACAG 58.220 41.667 4.29 0.00 37.93 2.74
2427 3221 0.179062 GAGCCAGGACATGCTAGTGG 60.179 60.000 0.00 0.00 38.11 4.00
2541 3340 2.416202 TGCTTCTATGCATGTGAACACG 59.584 45.455 10.16 3.98 38.12 4.49
2602 3500 5.782845 AGAGTTGAAGACAGGAAGATTAGGT 59.217 40.000 0.00 0.00 0.00 3.08
2608 3506 2.700371 TGCAGAGTTGAAGACAGGAAGA 59.300 45.455 0.00 0.00 0.00 2.87
3015 3914 4.130118 GGCGTTTCATTCTGGAGTATGAT 58.870 43.478 0.00 0.00 33.02 2.45
3187 4086 5.010719 TGTGTCATCTCTTACCTTTTCTCGT 59.989 40.000 0.00 0.00 0.00 4.18
3345 4249 0.999406 CTGGACGTGCGGAATGTAAG 59.001 55.000 10.88 0.00 0.00 2.34
3489 4395 7.152645 ACAACTCAGTTATCTAAACACGATGT 58.847 34.615 0.00 0.00 0.00 3.06
3522 4428 8.673626 AATGCACAAGAATACTAATTTCGTTG 57.326 30.769 0.00 0.00 0.00 4.10
3628 4534 2.550606 TGCAAAACATCCGTTGTACTCC 59.449 45.455 0.00 0.00 37.68 3.85
3685 4591 3.956744 AGCCAGTCTTATTGTTTCTCCC 58.043 45.455 0.00 0.00 0.00 4.30
3733 4639 6.005823 TGTTCCATGTCTGTCTGATTCATTT 58.994 36.000 0.00 0.00 0.00 2.32
3755 4661 5.204409 TGTTCCGTAGTACTGTGAATTGT 57.796 39.130 5.39 0.00 0.00 2.71
3863 4769 0.179065 TCATGCTCATCTGCCTTCCG 60.179 55.000 0.00 0.00 0.00 4.30
3942 4848 7.925483 GCCCTAATATTGTGTTTTTGCATATGA 59.075 33.333 6.97 0.00 0.00 2.15
3949 4855 6.686630 TGTCTGCCCTAATATTGTGTTTTTG 58.313 36.000 0.00 0.00 0.00 2.44
3950 4856 6.909550 TGTCTGCCCTAATATTGTGTTTTT 57.090 33.333 0.00 0.00 0.00 1.94
3953 4859 6.909550 TTTTGTCTGCCCTAATATTGTGTT 57.090 33.333 0.00 0.00 0.00 3.32
3971 4877 9.979578 TGTAAGCATTTTATCTGTGATTTTTGT 57.020 25.926 0.00 0.00 0.00 2.83
4223 5129 5.890752 AAGAAGCTAAACCCTCCTATACC 57.109 43.478 0.00 0.00 0.00 2.73
4266 5172 0.183731 CAAGGTGAAGCCCCTATCCC 59.816 60.000 0.00 0.00 38.26 3.85
4400 5306 3.691498 GTTTGCTAACCAACAGTGTGAC 58.309 45.455 0.00 0.00 31.97 3.67
4543 5482 2.546373 GGGCAACACTTGACGTACTGTA 60.546 50.000 0.00 0.00 40.53 2.74
4731 5670 4.385358 AAACTAAAACAGGGCACAACTG 57.615 40.909 0.00 0.00 41.64 3.16
4737 5676 5.622346 ATTTCCAAAACTAAAACAGGGCA 57.378 34.783 0.00 0.00 0.00 5.36
4794 5733 4.093743 TCACTGAGCTAGGACAATTACCA 58.906 43.478 0.00 0.00 0.00 3.25
4795 5734 4.737855 TCACTGAGCTAGGACAATTACC 57.262 45.455 0.00 0.00 0.00 2.85
4861 5809 1.219935 GTCGTAACGGGGCCTTCAT 59.780 57.895 0.84 0.00 0.00 2.57
4909 5857 2.011947 TGCACTGCATGATTAGACTGC 58.988 47.619 0.00 0.00 31.71 4.40
4910 5858 4.261072 GGATTGCACTGCATGATTAGACTG 60.261 45.833 4.10 0.00 38.76 3.51
5000 5951 6.585695 AATCTTGATTGAACAGCTTCACAT 57.414 33.333 0.00 0.00 36.06 3.21
5183 6142 2.191513 CCGAGTCGCCCGATTCCTA 61.192 63.158 7.12 0.00 0.00 2.94
5192 6151 1.445582 ACGATTTCACCGAGTCGCC 60.446 57.895 7.12 0.00 37.59 5.54
5209 6168 2.622942 TCCTGTGTGGCATTTTCTTCAC 59.377 45.455 0.00 0.00 35.26 3.18
5225 6184 3.264450 CCAAGTCTCCCACTAATTCCTGT 59.736 47.826 0.00 0.00 32.30 4.00
5338 6311 2.478831 GATCAATTCAGCGGAGGTCTC 58.521 52.381 0.00 0.00 33.74 3.36
5360 6333 7.398024 CCTGTAAATGATATTCTTCCCTAGGG 58.602 42.308 23.22 23.22 0.00 3.53
5361 6334 6.881602 GCCTGTAAATGATATTCTTCCCTAGG 59.118 42.308 0.06 0.06 0.00 3.02
5381 6354 8.694540 TCAATATTGCTAATATTTGTTGCCTGT 58.305 29.630 10.76 0.00 41.01 4.00
5410 6383 5.560722 TGAGTAGTCATCCTTGGTGAAAA 57.439 39.130 0.00 0.00 0.00 2.29
5462 6440 6.886459 ACTACAAGTATTTCGGTACAGAGGTA 59.114 38.462 0.00 0.00 0.00 3.08
5463 6441 5.713861 ACTACAAGTATTTCGGTACAGAGGT 59.286 40.000 0.00 0.00 0.00 3.85
5464 6442 6.205101 ACTACAAGTATTTCGGTACAGAGG 57.795 41.667 0.00 0.00 0.00 3.69
5465 6443 6.530534 CCAACTACAAGTATTTCGGTACAGAG 59.469 42.308 0.00 0.00 0.00 3.35
5466 6444 6.392354 CCAACTACAAGTATTTCGGTACAGA 58.608 40.000 0.00 0.00 0.00 3.41
5468 6446 5.481105 CCCAACTACAAGTATTTCGGTACA 58.519 41.667 0.00 0.00 0.00 2.90
5469 6447 4.872124 CCCCAACTACAAGTATTTCGGTAC 59.128 45.833 0.00 0.00 0.00 3.34
5470 6448 4.080975 CCCCCAACTACAAGTATTTCGGTA 60.081 45.833 0.00 0.00 0.00 4.02
5471 6449 3.307904 CCCCCAACTACAAGTATTTCGGT 60.308 47.826 0.00 0.00 0.00 4.69
5472 6450 3.054948 TCCCCCAACTACAAGTATTTCGG 60.055 47.826 0.00 0.00 0.00 4.30
5473 6451 4.210724 TCCCCCAACTACAAGTATTTCG 57.789 45.455 0.00 0.00 0.00 3.46
5474 6452 5.567430 AGTTCCCCCAACTACAAGTATTTC 58.433 41.667 0.00 0.00 44.13 2.17
5475 6453 5.594199 AGTTCCCCCAACTACAAGTATTT 57.406 39.130 0.00 0.00 44.13 1.40
5476 6454 5.163023 ACAAGTTCCCCCAACTACAAGTATT 60.163 40.000 0.00 0.00 45.32 1.89
5477 6455 4.352893 ACAAGTTCCCCCAACTACAAGTAT 59.647 41.667 0.00 0.00 45.32 2.12
5478 6456 3.717913 ACAAGTTCCCCCAACTACAAGTA 59.282 43.478 0.00 0.00 45.32 2.24
5479 6457 2.512476 ACAAGTTCCCCCAACTACAAGT 59.488 45.455 0.00 0.00 45.32 3.16
5480 6458 3.223674 ACAAGTTCCCCCAACTACAAG 57.776 47.619 0.00 0.00 45.32 3.16
5481 6459 5.327737 AATACAAGTTCCCCCAACTACAA 57.672 39.130 0.00 0.00 45.32 2.41
5482 6460 5.548836 ACTAATACAAGTTCCCCCAACTACA 59.451 40.000 0.00 0.00 45.32 2.74
5483 6461 6.058553 ACTAATACAAGTTCCCCCAACTAC 57.941 41.667 0.00 0.00 45.32 2.73
5484 6462 6.707273 AACTAATACAAGTTCCCCCAACTA 57.293 37.500 0.00 0.00 45.32 2.24
5485 6463 9.824360 GGGAAACTAATACAAGTTCCCCCAACT 62.824 44.444 16.15 0.00 45.80 3.16
5486 6464 5.184479 GGAAACTAATACAAGTTCCCCCAAC 59.816 44.000 0.00 0.00 38.76 3.77
5487 6465 5.326900 GGAAACTAATACAAGTTCCCCCAA 58.673 41.667 0.00 0.00 38.76 4.12
5488 6466 4.264038 GGGAAACTAATACAAGTTCCCCCA 60.264 45.833 16.15 0.00 45.80 4.96
5489 6467 4.275810 GGGAAACTAATACAAGTTCCCCC 58.724 47.826 8.34 5.80 45.80 5.40
5491 6469 4.925836 TGGGGAAACTAATACAAGTTCCC 58.074 43.478 10.71 10.71 41.07 3.97
5492 6470 6.263516 GTTGGGGAAACTAATACAAGTTCC 57.736 41.667 0.00 0.00 38.76 3.62
5505 6483 7.446769 ACCAAAATATTTGTAGTTGGGGAAAC 58.553 34.615 16.55 0.00 42.52 2.78
5506 6484 7.619512 ACCAAAATATTTGTAGTTGGGGAAA 57.380 32.000 16.55 0.00 42.52 3.13
5507 6485 7.728981 TGTACCAAAATATTTGTAGTTGGGGAA 59.271 33.333 16.55 3.53 42.52 3.97
5508 6486 7.239438 TGTACCAAAATATTTGTAGTTGGGGA 58.761 34.615 16.55 5.25 42.52 4.81
5509 6487 7.394923 TCTGTACCAAAATATTTGTAGTTGGGG 59.605 37.037 16.55 7.14 42.52 4.96
5510 6488 8.343168 TCTGTACCAAAATATTTGTAGTTGGG 57.657 34.615 16.55 7.13 42.52 4.12
5511 6489 8.458843 CCTCTGTACCAAAATATTTGTAGTTGG 58.541 37.037 12.39 12.39 43.60 3.77
5512 6490 8.458843 CCCTCTGTACCAAAATATTTGTAGTTG 58.541 37.037 0.39 0.00 0.00 3.16
5513 6491 8.387813 TCCCTCTGTACCAAAATATTTGTAGTT 58.612 33.333 0.39 0.00 0.00 2.24
5514 6492 7.924541 TCCCTCTGTACCAAAATATTTGTAGT 58.075 34.615 0.39 2.73 0.00 2.73
5515 6493 8.047310 ACTCCCTCTGTACCAAAATATTTGTAG 58.953 37.037 0.39 0.00 0.00 2.74
5516 6494 7.924541 ACTCCCTCTGTACCAAAATATTTGTA 58.075 34.615 0.39 0.00 0.00 2.41
5517 6495 6.790319 ACTCCCTCTGTACCAAAATATTTGT 58.210 36.000 0.39 0.00 0.00 2.83
5518 6496 7.012421 GCTACTCCCTCTGTACCAAAATATTTG 59.988 40.741 0.39 0.00 0.00 2.32
5519 6497 7.054751 GCTACTCCCTCTGTACCAAAATATTT 58.945 38.462 0.00 0.00 0.00 1.40
5520 6498 6.387220 AGCTACTCCCTCTGTACCAAAATATT 59.613 38.462 0.00 0.00 0.00 1.28
5521 6499 5.905913 AGCTACTCCCTCTGTACCAAAATAT 59.094 40.000 0.00 0.00 0.00 1.28
5522 6500 5.278061 AGCTACTCCCTCTGTACCAAAATA 58.722 41.667 0.00 0.00 0.00 1.40
5523 6501 4.104831 AGCTACTCCCTCTGTACCAAAAT 58.895 43.478 0.00 0.00 0.00 1.82
5524 6502 3.517612 AGCTACTCCCTCTGTACCAAAA 58.482 45.455 0.00 0.00 0.00 2.44
5525 6503 3.185880 AGCTACTCCCTCTGTACCAAA 57.814 47.619 0.00 0.00 0.00 3.28
5526 6504 2.921834 AGCTACTCCCTCTGTACCAA 57.078 50.000 0.00 0.00 0.00 3.67
5527 6505 3.268856 AGTTAGCTACTCCCTCTGTACCA 59.731 47.826 0.00 0.00 28.23 3.25
5528 6506 3.633065 CAGTTAGCTACTCCCTCTGTACC 59.367 52.174 0.00 0.00 33.85 3.34
5529 6507 4.336153 GTCAGTTAGCTACTCCCTCTGTAC 59.664 50.000 0.00 0.00 33.85 2.90
5530 6508 4.227754 AGTCAGTTAGCTACTCCCTCTGTA 59.772 45.833 0.00 0.00 33.85 2.74
5531 6509 3.010808 AGTCAGTTAGCTACTCCCTCTGT 59.989 47.826 0.00 0.00 33.85 3.41
5532 6510 3.626930 AGTCAGTTAGCTACTCCCTCTG 58.373 50.000 0.00 0.00 33.85 3.35
5533 6511 3.526019 AGAGTCAGTTAGCTACTCCCTCT 59.474 47.826 9.49 10.69 40.42 3.69
5534 6512 3.630312 CAGAGTCAGTTAGCTACTCCCTC 59.370 52.174 9.49 9.12 40.42 4.30
5535 6513 3.267291 TCAGAGTCAGTTAGCTACTCCCT 59.733 47.826 9.49 1.94 40.42 4.20
5536 6514 3.379057 GTCAGAGTCAGTTAGCTACTCCC 59.621 52.174 9.49 0.00 40.42 4.30
5537 6515 3.379057 GGTCAGAGTCAGTTAGCTACTCC 59.621 52.174 9.49 0.00 40.42 3.85
5538 6516 4.266714 AGGTCAGAGTCAGTTAGCTACTC 58.733 47.826 5.58 5.58 39.95 2.59
5574 6556 1.206072 GCAGTCTCAAAGCGCACAG 59.794 57.895 11.47 0.00 0.00 3.66
5703 6690 8.721133 TGAACACCCAGAGCTATTATTATCTA 57.279 34.615 0.00 0.00 0.00 1.98
5715 6702 2.238521 TCCAATTTGAACACCCAGAGC 58.761 47.619 0.00 0.00 0.00 4.09
5807 6794 7.246674 TGAAACTAGTTTTCTTAGTGCACTG 57.753 36.000 29.57 13.80 43.70 3.66
5839 6826 1.611006 GATCTCTCACCGCATCTGCTA 59.389 52.381 0.09 0.00 39.32 3.49
5925 6912 5.009911 TCAGTTCATGAATTTGGTGAGTTGG 59.990 40.000 12.12 0.00 34.02 3.77
5968 6955 7.507733 AATGGAATTTATCTGATGAGCTGAC 57.492 36.000 0.00 0.00 26.74 3.51
5980 6967 6.914757 CGCTTCTTCCTCAAATGGAATTTATC 59.085 38.462 0.00 0.00 46.64 1.75
5982 6969 5.710099 ACGCTTCTTCCTCAAATGGAATTTA 59.290 36.000 0.00 0.00 46.64 1.40
6055 7042 4.648626 TGCTGCTGAGTGGTGGCC 62.649 66.667 0.00 0.00 0.00 5.36
6064 7051 1.371337 GGATCGCATTGTGCTGCTGA 61.371 55.000 0.00 0.00 42.25 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.